Query psy10019
Match_columns 388
No_of_seqs 286 out of 2146
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 15:46:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020|consensus 100.0 2E-72 4.3E-77 558.1 25.1 218 19-237 71-294 (785)
2 PTZ00272 heat shock protein 83 100.0 1.3E-70 2.7E-75 583.9 33.0 210 21-230 3-212 (701)
3 PTZ00130 heat shock protein 90 100.0 1.7E-70 3.6E-75 583.9 30.7 213 15-227 60-274 (814)
4 COG0326 HtpG Molecular chapero 100.0 1.8E-68 3.8E-73 552.0 29.5 209 19-229 3-214 (623)
5 KOG0019|consensus 100.0 8.8E-67 1.9E-71 530.5 25.6 349 5-358 19-652 (656)
6 PRK05218 heat shock protein 90 100.0 1E-56 2.2E-61 475.8 31.6 204 20-225 3-210 (613)
7 PRK14083 HSP90 family protein; 100.0 2E-51 4.4E-56 432.6 26.8 194 22-226 2-197 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 4.3E-29 9.2E-34 260.7 16.3 131 257-388 401-531 (531)
9 PF13589 HATPase_c_3: Histidin 99.7 1.3E-17 2.9E-22 145.4 9.0 101 41-166 1-104 (137)
10 TIGR00585 mutl DNA mismatch re 99.6 2.3E-15 4.9E-20 148.5 14.9 167 32-224 10-192 (312)
11 COG0323 MutL DNA mismatch repa 99.6 1.3E-15 2.8E-20 162.9 13.2 168 32-228 11-195 (638)
12 COG1389 DNA topoisomerase VI, 99.6 1.1E-14 2.4E-19 146.2 13.2 154 41-215 30-201 (538)
13 PRK00095 mutL DNA mismatch rep 99.5 9.9E-14 2.1E-18 148.4 14.0 169 32-229 10-194 (617)
14 PRK04184 DNA topoisomerase VI 99.4 2.4E-12 5.2E-17 134.5 14.8 158 45-224 38-211 (535)
15 TIGR01052 top6b DNA topoisomer 99.3 2.4E-11 5.1E-16 125.8 14.2 159 46-225 31-203 (488)
16 PRK14868 DNA topoisomerase VI 99.3 3.2E-11 6.9E-16 129.1 13.4 159 46-226 49-219 (795)
17 KOG1979|consensus 99.2 1.6E-10 3.4E-15 119.1 12.2 154 32-216 15-186 (694)
18 KOG1978|consensus 99.0 7.7E-10 1.7E-14 116.3 9.2 157 35-216 12-180 (672)
19 PRK14867 DNA topoisomerase VI 99.0 5E-09 1.1E-13 111.9 14.1 160 46-226 39-210 (659)
20 TIGR01055 parE_Gneg DNA topois 99.0 2.6E-09 5.7E-14 114.5 12.1 160 43-227 30-205 (625)
21 PRK05559 DNA topoisomerase IV 99.0 3E-09 6.5E-14 114.3 11.3 161 45-227 39-212 (631)
22 TIGR01059 gyrB DNA gyrase, B s 98.9 1.6E-08 3.5E-13 109.2 13.2 155 45-228 32-202 (654)
23 smart00433 TOP2c Topoisomerase 98.9 7.5E-09 1.6E-13 110.6 9.6 157 46-227 4-176 (594)
24 PRK05644 gyrB DNA gyrase subun 98.8 1.9E-08 4.1E-13 108.2 12.0 158 45-227 39-210 (638)
25 PRK14939 gyrB DNA gyrase subun 98.8 3.2E-08 6.9E-13 107.6 10.6 155 45-227 39-210 (756)
26 PF02518 HATPase_c: Histidine 98.7 1.3E-07 2.9E-12 78.2 9.3 80 46-150 8-87 (111)
27 KOG1977|consensus 98.3 4.2E-07 9.2E-12 95.9 4.6 127 43-192 21-149 (1142)
28 cd00075 HATPase_c Histidine ki 98.0 5.4E-05 1.2E-09 59.1 9.4 87 46-157 3-93 (103)
29 TIGR01058 parE_Gpos DNA topois 97.8 7.6E-05 1.6E-09 80.6 9.7 160 45-227 36-208 (637)
30 smart00387 HATPase_c Histidine 97.7 0.00024 5.2E-09 56.3 8.4 80 46-150 8-87 (111)
31 PRK10755 sensor protein BasS/P 97.6 0.00025 5.4E-09 70.2 8.9 76 46-149 250-325 (356)
32 PRK10604 sensor protein RstB; 97.6 0.00022 4.7E-09 73.2 8.5 77 46-148 322-398 (433)
33 PRK11006 phoR phosphate regulo 97.5 0.00034 7.4E-09 71.4 9.4 79 46-148 320-398 (430)
34 PRK10549 signal transduction h 97.5 0.00042 9.1E-09 70.8 9.3 79 47-149 356-434 (466)
35 PRK09470 cpxA two-component se 97.5 0.00047 1E-08 70.1 9.6 75 47-147 357-431 (461)
36 COG0187 GyrB Type IIA topoisom 97.4 0.00026 5.5E-09 75.1 7.0 165 44-231 37-215 (635)
37 PLN03237 DNA topoisomerase 2; 97.4 0.00061 1.3E-08 78.6 10.5 162 45-227 79-260 (1465)
38 TIGR02916 PEP_his_kin putative 97.4 0.00047 1E-08 75.0 9.2 74 46-148 582-655 (679)
39 PLN03128 DNA topoisomerase 2; 97.4 0.00064 1.4E-08 77.5 10.1 162 45-227 54-235 (1135)
40 PRK09303 adaptive-response sen 97.4 0.00068 1.5E-08 68.5 9.2 77 46-148 275-352 (380)
41 PRK11100 sensory histidine kin 97.4 0.00099 2.2E-08 67.7 10.0 78 46-148 371-448 (475)
42 COG3290 CitA Signal transducti 97.4 0.00089 1.9E-08 70.0 9.5 74 46-145 430-503 (537)
43 TIGR02938 nifL_nitrog nitrogen 97.3 0.00098 2.1E-08 67.6 9.6 79 46-147 390-468 (494)
44 PTZ00108 DNA topoisomerase 2-l 97.3 0.00081 1.8E-08 77.7 9.8 129 45-192 59-201 (1388)
45 TIGR02966 phoR_proteo phosphat 97.3 0.00095 2.1E-08 64.0 8.8 78 47-148 233-310 (333)
46 PRK10364 sensor protein ZraS; 97.3 0.0014 3E-08 67.4 10.2 73 46-148 351-423 (457)
47 PRK11466 hybrid sensory histid 97.3 0.0025 5.4E-08 71.1 13.0 91 47-166 565-659 (914)
48 PRK15347 two component system 97.3 0.001 2.2E-08 74.0 9.5 91 46-165 516-610 (921)
49 TIGR01386 cztS_silS_copS heavy 97.2 0.0012 2.7E-08 66.7 9.0 80 46-149 356-435 (457)
50 PTZ00109 DNA gyrase subunit b; 97.2 0.00056 1.2E-08 75.5 6.8 165 45-227 131-358 (903)
51 PHA02569 39 DNA topoisomerase 97.2 0.0011 2.3E-08 71.4 8.6 158 46-227 48-224 (602)
52 PRK11086 sensory histidine kin 97.2 0.0018 3.9E-08 67.3 10.0 75 46-148 436-510 (542)
53 PRK10618 phosphotransfer inter 97.2 0.0057 1.2E-07 68.9 14.4 96 46-167 568-670 (894)
54 TIGR02956 TMAO_torS TMAO reduc 97.2 0.002 4.3E-08 72.3 10.5 94 46-166 582-680 (968)
55 PRK10815 sensor protein PhoQ; 97.1 0.0016 3.4E-08 68.2 8.9 73 47-149 382-454 (485)
56 PRK15053 dpiB sensor histidine 97.1 0.0021 4.6E-08 67.3 9.8 79 47-148 436-514 (545)
57 PRK13837 two-component VirA-li 97.1 0.0063 1.4E-07 67.8 14.0 91 46-166 563-672 (828)
58 PRK09467 envZ osmolarity senso 97.1 0.0021 4.4E-08 65.2 9.2 75 47-149 335-409 (435)
59 TIGR01925 spIIAB anti-sigma F 97.1 0.0034 7.3E-08 53.9 9.0 84 46-156 42-125 (137)
60 PRK11091 aerobic respiration c 97.0 0.0036 7.9E-08 68.8 10.7 97 46-166 401-502 (779)
61 PRK11360 sensory histidine kin 97.0 0.0036 7.8E-08 65.1 9.8 50 47-110 504-554 (607)
62 COG4191 Signal transduction hi 97.0 0.0026 5.7E-08 67.1 8.5 58 47-116 501-558 (603)
63 PRK10841 hybrid sensory kinase 97.0 0.01 2.2E-07 67.1 13.9 142 46-222 565-711 (924)
64 PRK03660 anti-sigma F factor; 96.9 0.007 1.5E-07 52.4 9.6 83 46-155 42-124 (146)
65 PRK10490 sensor protein KdpD; 96.9 0.0034 7.3E-08 70.7 9.5 76 46-147 781-856 (895)
66 PRK04069 serine-protein kinase 96.9 0.0031 6.7E-08 56.3 7.1 87 46-155 45-131 (161)
67 COG0642 BaeS Signal transducti 96.8 0.0051 1.1E-07 57.9 8.7 50 46-110 231-280 (336)
68 PRK11107 hybrid sensory histid 96.8 0.0052 1.1E-07 68.4 9.8 96 46-166 411-515 (919)
69 PRK09835 sensor kinase CusS; P 96.8 0.0075 1.6E-07 61.8 9.9 78 46-147 378-455 (482)
70 PRK10337 sensor protein QseC; 96.8 0.006 1.3E-07 62.2 9.1 72 47-149 356-427 (449)
71 TIGR03785 marine_sort_HK prote 96.8 0.0058 1.3E-07 67.0 9.6 80 46-149 600-679 (703)
72 TIGR01924 rsbW_low_gc serine-p 96.5 0.013 2.7E-07 52.4 8.5 87 46-155 45-131 (159)
73 PF13581 HATPase_c_2: Histidin 96.4 0.016 3.4E-07 48.8 8.0 81 45-153 33-113 (125)
74 PRK11073 glnL nitrogen regulat 96.3 0.017 3.8E-07 56.6 8.6 52 46-110 240-301 (348)
75 PRK13557 histidine kinase; Pro 96.0 0.032 6.9E-07 57.7 9.1 64 90-167 325-392 (540)
76 PRK09959 hybrid sensory histid 95.9 0.032 6.9E-07 64.4 9.4 93 46-165 831-932 (1197)
77 PRK10547 chemotaxis protein Ch 95.8 0.088 1.9E-06 57.5 11.9 106 48-164 390-518 (670)
78 COG4585 Signal transduction hi 95.6 0.033 7.1E-07 55.9 7.5 46 46-106 282-327 (365)
79 PRK10600 nitrate/nitrite senso 95.6 0.038 8.3E-07 58.7 8.0 43 47-104 473-515 (569)
80 COG2205 KdpD Osmosensitive K+ 95.4 0.082 1.8E-06 58.1 9.8 85 46-156 778-866 (890)
81 KOG0787|consensus 94.9 0.081 1.7E-06 53.4 7.4 88 46-143 263-350 (414)
82 COG3850 NarQ Signal transducti 94.9 0.11 2.3E-06 54.8 8.4 43 47-104 485-527 (574)
83 COG4251 Bacteriophytochrome (l 94.7 0.11 2.4E-06 55.6 8.0 76 79-166 657-738 (750)
84 COG2172 RsbW Anti-sigma regula 94.0 0.26 5.7E-06 43.6 8.0 89 45-159 42-130 (146)
85 COG3920 Signal transduction hi 93.5 0.14 3.1E-06 48.4 5.5 47 47-104 126-174 (221)
86 PRK11644 sensory histidine kin 93.2 0.079 1.7E-06 55.8 3.7 43 47-104 414-456 (495)
87 PRK13560 hypothetical protein; 92.7 0.14 2.9E-06 55.9 4.8 47 47-104 715-762 (807)
88 COG4192 Signal transduction hi 92.5 0.24 5.3E-06 51.4 5.9 49 47-110 568-619 (673)
89 PRK10935 nitrate/nitrite senso 92.3 0.56 1.2E-05 49.3 8.7 42 47-103 475-517 (565)
90 COG2972 Predicted signal trans 92.3 0.32 7E-06 50.6 6.8 55 41-107 348-404 (456)
91 COG0643 CheA Chemotaxis protei 91.6 0.78 1.7E-05 50.6 8.9 55 47-109 436-496 (716)
92 KOG1845|consensus 90.9 0.25 5.3E-06 54.4 4.2 94 46-156 149-245 (775)
93 COG5000 NtrY Signal transducti 90.5 0.43 9.3E-06 51.2 5.4 55 47-110 604-660 (712)
94 COG5002 VicK Signal transducti 89.0 0.76 1.6E-05 46.4 5.5 56 79-144 362-419 (459)
95 PRK13559 hypothetical protein; 85.2 1 2.3E-05 44.4 4.2 47 46-103 270-318 (361)
96 KOG0355|consensus 83.1 1.8 3.8E-05 47.9 5.1 125 45-192 55-192 (842)
97 KOG1845|consensus 71.7 2.7 5.8E-05 46.6 2.4 53 92-159 2-55 (775)
98 PF12588 PSDC: Phophatidylseri 67.7 15 0.00034 32.3 6.0 53 295-350 2-59 (141)
99 PF14501 HATPase_c_5: GHKL dom 64.1 19 0.0004 29.0 5.5 71 46-149 8-78 (100)
100 PF06112 Herpes_capsid: Gammah 62.9 11 0.00024 33.4 4.0 28 285-312 12-39 (147)
101 COG3851 UhpB Signal transducti 62.8 9.7 0.00021 38.9 4.2 25 78-102 430-454 (497)
102 COG1480 Predicted membrane-ass 58.4 5.6 0.00012 43.4 1.7 35 258-303 450-485 (700)
103 COG4564 Signal transduction hi 58.2 12 0.00027 37.7 4.0 49 45-106 357-407 (459)
104 COG3852 NtrB Signal transducti 57.6 43 0.00093 33.6 7.5 67 40-110 235-308 (363)
105 COG5381 Uncharacterized protei 53.4 56 0.0012 29.3 6.8 83 46-143 66-149 (184)
106 KOG0547|consensus 46.1 25 0.00055 37.3 4.1 59 285-348 172-232 (606)
107 PF04025 DUF370: Domain of unk 40.1 42 0.00092 26.3 3.6 37 44-99 22-58 (73)
108 COG3275 LytS Putative regulato 36.2 50 0.0011 35.0 4.5 48 47-104 460-507 (557)
109 COG2865 Predicted transcriptio 36.2 73 0.0016 33.6 5.8 86 41-148 268-357 (467)
110 PF01402 RHH_1: Ribbon-helix-h 30.8 1E+02 0.0022 20.2 3.9 35 23-57 4-38 (39)
111 COG4463 CtsR Transcriptional r 28.1 60 0.0013 28.7 3.0 42 289-330 73-114 (153)
112 PF13431 TPR_17: Tetratricopep 24.8 26 0.00055 22.8 0.1 16 286-301 3-18 (34)
113 PRK04323 hypothetical protein; 23.6 1.6E+02 0.0035 24.1 4.5 48 45-111 27-78 (91)
114 PF07492 Trehalase_Ca-bi: Neut 20.6 79 0.0017 20.5 1.7 12 88-99 12-23 (30)
No 1
>KOG0020|consensus
Probab=100.00 E-value=2e-72 Score=558.12 Aligned_cols=218 Identities=61% Similarity=0.948 Sum_probs=205.0
Q ss_pred CceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCC
Q psy10019 19 DVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSG 98 (388)
Q Consensus 19 ~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG 98 (388)
.++++.||++++||++||+++||+|+.+||||||+||.||..++|+.+++++..+.....+.|.|..|+.++.|.|.|.|
T Consensus 71 kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtG 150 (785)
T KOG0020|consen 71 KAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTG 150 (785)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEeccc
Confidence 36899999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhccCchhHHHHHhcCCCC-----ccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCce
Q psy10019 99 IGMTKADLVNNLGTIAKSGTKAFMEALQAGADI-----SMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSF 173 (388)
Q Consensus 99 ~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~-----~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~ 173 (388)
+|||++||.++|++||.||+..|.+++++..+. ..|||||+||||+|+|+|+|.|+|+++++.+|.|+++.. .|
T Consensus 151 iGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESdan-~F 229 (785)
T KOG0020|consen 151 IGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESDAN-SF 229 (785)
T ss_pred CCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeeccCc-ce
Confidence 999999999999999999999999999875443 789999999999999999999999999999999999874 89
Q ss_pred eeecCC-CCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeeeeeccchh
Q psy10019 174 TIKPDH-GEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDE 237 (388)
Q Consensus 174 ~i~~~~-~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~~~~~~~~ 237 (388)
.|...+ ++..++||+|+|+|+++...|++.++++++|++|++|+.|||++|..++..+++|-+|
T Consensus 230 svseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEE 294 (785)
T KOG0020|consen 230 SVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEE 294 (785)
T ss_pred eeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeeccccc
Confidence 988765 5778999999999999999999999999999999999999999999999999888544
No 2
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=1.3e-70 Score=583.86 Aligned_cols=210 Identities=73% Similarity=1.102 Sum_probs=192.9
Q ss_pred eeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCC
Q psy10019 21 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIG 100 (388)
Q Consensus 21 ~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~G 100 (388)
+++.||+++++||+||+++||+++.+|||||||||+|||.++||.+++++......+.+.|+|..+..+.+|+|.|||+|
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiG 82 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIG 82 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999998876666778899988888899999999999
Q ss_pred CCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCceeeecCCC
Q psy10019 101 MTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHG 180 (388)
Q Consensus 101 Ms~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~i~~~~~ 180 (388)
|+++||.++|++||+||++.|.++++.+.+...||||||||||+||||++|+|+|++.++.+|.|++++++.|++.+.+.
T Consensus 83 Mt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~~~~~ 162 (701)
T PTZ00272 83 MTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPE 162 (701)
T ss_pred CCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEEeCCC
Confidence 99999999999999999999988776556678999999999999999999999999887789999999999999987644
Q ss_pred CCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeee
Q psy10019 181 EQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKERE 230 (388)
Q Consensus 181 ~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~ 230 (388)
....+||+|+|+|+++..+|++.++|+++|++||.|++|||+++..+..+
T Consensus 163 ~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~ 212 (701)
T PTZ00272 163 SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTE 212 (701)
T ss_pred CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccc
Confidence 45589999999999999999999999999999999999999998655443
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=1.7e-70 Score=583.92 Aligned_cols=213 Identities=56% Similarity=0.908 Sum_probs=195.5
Q ss_pred cccCCceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEE
Q psy10019 15 MAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTI 94 (388)
Q Consensus 15 ~~~~~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V 94 (388)
..+...+++.||+++++||+||+++||+++.+|||||||||+||++++||.+++++......+.+.|+|..+...++|+|
T Consensus 60 ~~~~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI 139 (814)
T PTZ00130 60 KPTSGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSI 139 (814)
T ss_pred CCCcccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEE
Confidence 34455689999999999999999999999999999999999999999999999998877777788999999988999999
Q ss_pred EeCCCCCCHHHHHHHHHHhhccCchhHHHHHhc-CCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCce
Q psy10019 95 IDSGIGMTKADLVNNLGTIAKSGTKAFMEALQA-GADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSF 173 (388)
Q Consensus 95 ~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~~-~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~ 173 (388)
+|||+|||+++|.++|++||+||++.|+++++. +.+...||||||||||+||||++|+|+|++.+..+|.|++.+++.|
T Consensus 140 ~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y 219 (814)
T PTZ00130 140 TDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKF 219 (814)
T ss_pred EECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcE
Confidence 999999999999999999999999999988864 3457799999999999999999999999998888999999999999
Q ss_pred eeecCC-CCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeee
Q psy10019 174 TIKPDH-GEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEK 227 (388)
Q Consensus 174 ~i~~~~-~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~ 227 (388)
.|.+.+ .....+||+|+|||+++..+|++.++|+++|++||.|++|||+++..+
T Consensus 220 ~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~ 274 (814)
T PTZ00130 220 TIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHEN 274 (814)
T ss_pred EEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEcccc
Confidence 999863 234589999999999999999999999999999999999999998644
No 4
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-68 Score=551.96 Aligned_cols=209 Identities=55% Similarity=0.871 Sum_probs=194.4
Q ss_pred CceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCC
Q psy10019 19 DVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSG 98 (388)
Q Consensus 19 ~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG 98 (388)
..++++||+++++||++|+++|||++.+|||||||||.|||.++||..+.++......++++|+|.+|+++++|+|.|||
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNG 82 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNG 82 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCC
Confidence 35788999999999999999999999999999999999999999999999998877778899999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhccCchhHHHHHhcC-CCCccccccchhhhhhhhccCeEEEEeecCC-CeeEEEEEecCCceeee
Q psy10019 99 IGMTKADLVNNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAYLVADKVTVHSKHND-DEQYIWESSAGGSFTIK 176 (388)
Q Consensus 99 ~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~-~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~-~~~~~w~~~~~~~~~i~ 176 (388)
+|||++|+.++|+|||+||++.|++.+... .+...||||||||||||||+|+|+|+|++.+ +.++.|++.|.+.|+|+
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~ 162 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVE 162 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEe
Confidence 999999999999999999999999988654 4688999999999999999999999999987 46789999999999999
Q ss_pred cCCCCCCC-CCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeee
Q psy10019 177 PDHGEQLG-RGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKER 229 (388)
Q Consensus 177 ~~~~~~~~-~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~ 229 (388)
+++ ... +||+|+|+|+++..+|++.++|+++|++||.|+++||++..++..
T Consensus 163 ~~~--~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~ 214 (623)
T COG0326 163 DID--KEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEK 214 (623)
T ss_pred ecc--CCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccc
Confidence 863 334 699999999999999999999999999999999999999987755
No 5
>KOG0019|consensus
Probab=100.00 E-value=8.8e-67 Score=530.50 Aligned_cols=349 Identities=56% Similarity=0.864 Sum_probs=306.8
Q ss_pred CCCCCccccccccCCceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEE
Q psy10019 5 PQRMPEQDVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKII 84 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~ 84 (388)
|.+-|-++..++....+++.||+++++|++++++.+||++++||||||+||.||+.++||.+++++... .++..|+|.
T Consensus 19 ~~~~~~~~~~~~~~~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~ 96 (656)
T KOG0019|consen 19 LRAEPLFSTKMADEPQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRII 96 (656)
T ss_pred cccccccccccccccccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEec
Confidence 445566777888888899999999999999999999999999999999999999999999999999876 678899999
Q ss_pred EcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHh-cCCCCccccccchhhhhhhhccCeEEEEeecCCCeeE
Q psy10019 85 PDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ-AGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQY 163 (388)
Q Consensus 85 ~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~-~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~ 163 (388)
.+.+.++|+|.|+|+|||++||.++|++||.||++.|++.++ ++.+...|||||+||||+|+|+++|.|+|++.++.++
T Consensus 97 ~nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y 176 (656)
T KOG0019|consen 97 TNKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGL 176 (656)
T ss_pred cCCCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcce
Confidence 999999999999999999999999999999999999999999 6778899999999999999999999999999988899
Q ss_pred EEEEecCCceeeecCCCCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeeee---------ecc
Q psy10019 164 IWESSAGGSFTIKPDHGEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREK---------ELE 234 (388)
Q Consensus 164 ~w~~~~~~~~~i~~~~~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~~---------~~~ 234 (388)
.|++.+++.|.+...+ ...+||+|+|||+.+..+|+++.+|+++|++||.|+.|||+++.++...- ++.
T Consensus 177 ~Wes~~~gs~~v~~~~--~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~ek~N~tKpiW~rnp~dit 254 (656)
T KOG0019|consen 177 QWTSNGRGSYEIAEAS--GLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNGERVNNLKAIWTMNPKEVN 254 (656)
T ss_pred eeecCCCCceEEeecc--CccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhhhhhhccCcccccCchhhh
Confidence 9999999999998753 48999999999999888999999999999999999999999999874322 111
Q ss_pred chhHHh-----hh--hh----------c----------------------------------------------c-----
Q psy10019 235 EDEEEE-----KE--KD----------K----------------------------------------------E----- 246 (388)
Q Consensus 235 ~~~~~~-----~~--~~----------~----------------------------------------------~----- 246 (388)
.+|=.+ .. ++ . +
T Consensus 255 ~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap~~lF~~~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv 334 (656)
T KOG0019|consen 255 EEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAPNSMFDMRKKKNGIKLYARRVLITDDAGDLIPEWLRFV 334 (656)
T ss_pred HHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCcchhhhhhhccCceEEEEEEEecCchhHHHHHHHhchh
Confidence 111000 00 00 0 0
Q ss_pred ------c----c-----------------------------------------------------CC-------------
Q psy10019 247 ------E----N-----------------------------------------------------ED------------- 250 (388)
Q Consensus 247 ------e----~-----------------------------------------------------~d------------- 250 (388)
| | +|
T Consensus 335 ~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLr 414 (656)
T KOG0019|consen 335 RGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLR 414 (656)
T ss_pred eeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhh
Confidence 0 0 00
Q ss_pred --------------------------------------------------------------------------------
Q psy10019 251 -------------------------------------------------------------------------------- 250 (388)
Q Consensus 251 -------------------------------------------------------------------------------- 250 (388)
T Consensus 415 y~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsv 494 (656)
T KOG0019|consen 415 YESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSV 494 (656)
T ss_pred hhccccccccccHHHHHHhhcccccceEEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceecc
Confidence
Q ss_pred ----------C--------------------------------------CCCC---cCCCCchHHHHHHHHHhccccccc
Q psy10019 251 ----------D--------------------------------------KTPK---IEDYGWTANMERIMKAQALRDTST 279 (388)
Q Consensus 251 ----------~--------------------------------------~sP~---v~~~~~s~~Merimka~~~~~~~~ 279 (388)
+ .||+ +.++|||++|+|||+||+..+...
T Consensus 495 tkEglel~e~ee~~~k~ee~k~efe~lck~mK~iL~~kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~ 574 (656)
T KOG0019|consen 495 TKEGVELPEDDEEKAKDEESKKEFEELCKWMKEILGSKVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNET 574 (656)
T ss_pred chhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhcCceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccCh
Confidence 0 0443 399999999999999999988888
Q ss_pred ccccccccccccCCCChHHHHHHHhhhccCCcHHHHHHHHHHHHhhhhhCCCCCCCHHHHHHHHHHHHHhccCCCCCCC
Q psy10019 280 MGYMAAKKHLEINPDHNIIETLRQKADADKNDKAVKDLVMLLFETALLSSGFGLEDPQVHAARIHRMIKLGLGIDDDDE 358 (388)
Q Consensus 280 ~~~~~~kkiLEINp~Hpli~~L~~~~~~~~~~~~~~~~a~lL~d~All~~G~~l~Dp~~f~~ri~~ll~~~l~~~~~~~ 358 (388)
++++.+||+|||||+||||+.|.++...++++ .+++++.|||++|||.+|+.++||+.|+.|||+||..+|+++++.+
T Consensus 575 ~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv~llfetALlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~~ 652 (656)
T KOG0019|consen 575 MGYMKAKKHLEINPDHPLVKTLRQLRESDKND-TAKDLVEQLYETALISAGFSLDDPQTMVGRINRLLKSGLGRDEDEV 652 (656)
T ss_pred hhhccccceeeeCCCChHHHHHHHHHhcCcch-hHHHHHHHHHHHHHHHcCCCcCChHHHhhHHHHHHHHHhccCCCcc
Confidence 88999999999999999999999999888877 8999999999999999999999999999999999999999999753
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=1e-56 Score=475.77 Aligned_cols=204 Identities=56% Similarity=0.869 Sum_probs=186.0
Q ss_pred ceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCC
Q psy10019 20 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGI 99 (388)
Q Consensus 20 ~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~ 99 (388)
.+++.||+++++||++|+++||+|+.+|||||||||+|||.++||..++++.........+|+|.++.++++|+|+|||+
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~ 82 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGI 82 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCC
Confidence 58899999999999999999999999999999999999999999999888876656667899999988888999999999
Q ss_pred CCCHHHHHHHHHHhhccCchhHHHHHhc--CCCCccccccchhhhhhhhccCeEEEEeecCC--CeeEEEEEecCCceee
Q psy10019 100 GMTKADLVNNLGTIAKSGTKAFMEALQA--GADISMIGQFGVGFYSAYLVADKVTVHSKHND--DEQYIWESSAGGSFTI 175 (388)
Q Consensus 100 GMs~edl~~~l~~Ig~S~k~~f~~~~~~--~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~--~~~~~w~~~~~~~~~i 175 (388)
|||+++|.++|++||+||++.|.++++. ..+...||+|||||+|+|++|++|+|.|++.+ ..++.|.+.+++.|.+
T Consensus 83 GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~~i 162 (613)
T PRK05218 83 GMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYTI 162 (613)
T ss_pred CCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCceeEE
Confidence 9999999999999999999999888853 23568999999999999999999999999865 4689999998888999
Q ss_pred ecCCCCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEee
Q psy10019 176 KPDHGEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLV 225 (388)
Q Consensus 176 ~~~~~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~ 225 (388)
.+. ....+||+|+|+|+++..+|++..+|+++|++||.|+++||+++.
T Consensus 163 ~~~--~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~ 210 (613)
T PRK05218 163 EEI--EKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEK 210 (613)
T ss_pred eEC--CCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEec
Confidence 874 334799999999999999999999999999999999999999954
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=2e-51 Score=432.56 Aligned_cols=194 Identities=30% Similarity=0.508 Sum_probs=169.6
Q ss_pred eeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEE-cCCCCEEEEEeCCCC
Q psy10019 22 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIP-DKESRTLTIIDSGIG 100 (388)
Q Consensus 22 ~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~V~DNG~G 100 (388)
.+.||+|+++||++|+++||+++.+|||||||||+|||+++++.. ...+.+|+|.+ +.+..+|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~--------~~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD--------PTAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC--------CCCCceEEEEEccCCCcEEEEEeCCCC
Confidence 478999999999999999999999999999999999999876542 12245677766 777899999999999
Q ss_pred CCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecC-CCeeEEEEEecCCceeeecCC
Q psy10019 101 MTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHN-DDEQYIWESSAGGSFTIKPDH 179 (388)
Q Consensus 101 Ms~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~-~~~~~~w~~~~~~~~~i~~~~ 179 (388)
||.+++.++|++||.|+++.+. +. ..+...||+|||||||+|++|++|+|.|++. +..++.|.+.+++.|.++..+
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~-~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~ 150 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LG-FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLE 150 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hc-ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCC
Confidence 9999999999999999987653 11 2345789999999999999999999999987 467899999998999998643
Q ss_pred CCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeee
Q psy10019 180 GEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVE 226 (388)
Q Consensus 180 ~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~ 226 (388)
.....+||+|+|+++++..+|++.++|++++++||.|++|||+++++
T Consensus 151 ~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~ 197 (601)
T PRK14083 151 TERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE 197 (601)
T ss_pred CCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc
Confidence 45668999999999999999999999999999999999999999863
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=99.96 E-value=4.3e-29 Score=260.69 Aligned_cols=131 Identities=47% Similarity=0.758 Sum_probs=91.5
Q ss_pred CCCCchHHHHHHHHHhcccccccccccccccccccCCCChHHHHHHHhhhccCCcHHHHHHHHHHHHhhhhhCCCCCCCH
Q psy10019 257 EDYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKADADKNDKAVKDLVMLLFETALLSSGFGLEDP 336 (388)
Q Consensus 257 ~~~~~s~~Merimka~~~~~~~~~~~~~~kkiLEINp~Hpli~~L~~~~~~~~~~~~~~~~a~lL~d~All~~G~~l~Dp 336 (388)
+++|||++|+|||++|+.++...+.++.++|||||||+||||++|++++..+.+++.++++|++|||+|+|++|+.++||
T Consensus 401 ~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~l~dp 480 (531)
T PF00183_consen 401 SEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFELEDP 480 (531)
T ss_dssp -SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS-SSH
T ss_pred ccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCCcccH
Confidence 89999999999999998654443457778999999999999999999988887788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCchhhccccCCCCCCCCCCCccccccccCC
Q psy10019 337 QVHAARIHRMIKLGLGIDDDDEVPAEASKAADVDITPVDGDSEDASRMEEVD 388 (388)
Q Consensus 337 ~~f~~ri~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
+.|++||++||.++||++.++++++++..+..++++++ +++.+.++.+.||
T Consensus 481 ~~F~~Ri~~lL~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~vd 531 (531)
T PF00183_consen 481 AAFAKRINKLLEKSLGVDPDAEVEEEDEEEEEEEEEEE-EEDKEDSEMEEVD 531 (531)
T ss_dssp HHHHHHHHHHHHHTTC--STTTTTTGGG-GGG---------------SSS--
T ss_pred HHHHHHHHHHHHHhcCCCcCCcccccccccccCCCCCC-cCCCcccccccCC
Confidence 99999999999999999998866554322222222222 2223555666665
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.72 E-value=1.3e-17 Score=145.40 Aligned_cols=101 Identities=40% Similarity=0.525 Sum_probs=76.4
Q ss_pred CCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHHHhhccCch
Q psy10019 41 YSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD-KESRTLTIIDSGIGMTKADLVNNLGTIAKSGTK 119 (388)
Q Consensus 41 Ys~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~ 119 (388)
|+. +.+|+|||+||+||++++ +.|.|..+ .+...|.|.|||.||+.++|.. ++++|.|++.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~~----------------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGATN----------------IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHHH----------------EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCCE----------------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 666 889999999999999852 46666555 3458999999999999999977 7789998764
Q ss_pred hHHHHHhcCCCCccccccchh-hhhhhhccCeEEEEeecCCC-eeEEEE
Q psy10019 120 AFMEALQAGADISMIGQFGVG-FYSAYLVADKVTVHSKHNDD-EQYIWE 166 (388)
Q Consensus 120 ~f~~~~~~~~~~~~IG~FGIG-f~S~F~v~d~v~V~Sk~~~~-~~~~w~ 166 (388)
.. .....+|+||+| ++|+|++++.++|+|++.+. ..+.|.
T Consensus 63 ~~-------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~ 104 (137)
T PF13589_consen 63 SE-------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTID 104 (137)
T ss_dssp HH-------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEE
T ss_pred ch-------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEE
Confidence 21 124679999999 88999999999999998754 344443
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=2.3e-15 Score=148.54 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=109.8
Q ss_pred HHHHHH-HhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCC-EEEEEeCCCCCCHHHHHHH
Q psy10019 32 LMSLII-NTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESR-TLTIIDSGIGMTKADLVNN 109 (388)
Q Consensus 32 ll~lL~-~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~l~V~DNG~GMs~edl~~~ 109 (388)
+...|. .....++..+|+|||+||+||++. .|.|.+..++. .|.|.|||.||+.+++...
T Consensus 10 ~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~------------------~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~ 71 (312)
T TIGR00585 10 LVNKIAAGEVIERPASVVKELVENSLDAGAT------------------RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLA 71 (312)
T ss_pred HHHHHhCcCchhhHHHHHHHHHHHHHHCCCC------------------EEEEEEEeCCEEEEEEEecCCCCCHHHHHHH
Confidence 455555 456778899999999999999762 34443333333 5999999999999999877
Q ss_pred HHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeec-C-CCeeEEEEEecCCceeeecCCCCCCCCCc
Q psy10019 110 LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKH-N-DDEQYIWESSAGGSFTIKPDHGEQLGRGT 187 (388)
Q Consensus 110 l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~-~-~~~~~~w~~~~~~~~~i~~~~~~~~~~GT 187 (388)
+....+|....+. .+ ......|.+|.|++|...++ +++|+|++ . +..+|.|...+ + .+.........+||
T Consensus 72 ~~~~~tsk~~~~~-~~---~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g-~--~~~~~~~~~~~~GT 143 (312)
T TIGR00585 72 CERHATSKIQSFE-DL---ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEG-G--MIEEIKPAPRPVGT 143 (312)
T ss_pred hhCCCcCCCCChh-Hh---hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECC-C--cCcccccccCCCcc
Confidence 6666555433221 11 22467899999999999998 79999997 3 34577777433 2 22221124557999
Q ss_pred EEEEE-Ee---eCcccc-----ccHHHHHHHHHHhccc---CCcceEEe
Q psy10019 188 KMVLY-IK---EDQAEY-----LEEKKIKEIVKKHSQF---IGYPIKLL 224 (388)
Q Consensus 188 ~I~l~-Lk---~~~~e~-----~~~~~i~~~i~kys~~---l~~PI~i~ 224 (388)
+|++. |- +....+ .+...++.++++|+-. +.|.++.+
T Consensus 144 tV~v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~ 192 (312)
T TIGR00585 144 TVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHD 192 (312)
T ss_pred EEEEchhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 99995 10 001111 1237899999999844 33444443
No 11
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.3e-15 Score=162.85 Aligned_cols=168 Identities=24% Similarity=0.311 Sum_probs=123.2
Q ss_pred HHHHHH-HhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCE-EEEEeCCCCCCHHHHHHH
Q psy10019 32 LMSLII-NTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRT-LTIIDSGIGMTKADLVNN 109 (388)
Q Consensus 32 ll~lL~-~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~-l~V~DNG~GMs~edl~~~ 109 (388)
+...|+ -.....|..+|||||+||+||++ .+|+|.++.++.. |+|+|||+||+++||.-+
T Consensus 11 l~nqIAAGEVIerPaSVVKELVENSlDAGA------------------t~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la 72 (638)
T COG0323 11 LVNQIAAGEVIERPASVVKELVENSLDAGA------------------TRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLA 72 (638)
T ss_pred HHHHhcccceeecHHHHHHHHHhcccccCC------------------CEEEEEEccCCccEEEEEECCCCCCHHHHHHH
Confidence 444454 44566789999999999999998 3788888777755 999999999999999999
Q ss_pred HHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCC-CeeEEEEEecCCce-eeecCCCCCCCCCc
Q psy10019 110 LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHND-DEQYIWESSAGGSF-TIKPDHGEQLGRGT 187 (388)
Q Consensus 110 l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~-~~~~~w~~~~~~~~-~i~~~~~~~~~~GT 187 (388)
+.++++|.-+.+-. + ......|..|=.+.|.-.| .+++|+|++.+ ..++.|...|+..- .+.+ .....||
T Consensus 73 ~~rHaTSKI~~~~D-L---~~I~TlGFRGEAL~SIasV-srlti~Srt~~~~~~~~~~~~g~~~~~~~~p---~a~~~GT 144 (638)
T COG0323 73 LLRHATSKIASLED-L---FRIRTLGFRGEALASIASV-SRLTITSRTAEASEGTQIYAEGGGMEVTVKP---AAHPVGT 144 (638)
T ss_pred HhhhccccCCchhH-H---HHhhccCccHHHHHHHHhh-heeEEEeecCCcCceEEEEecCCcccccccC---CCCCCCC
Confidence 99999996543311 1 1235567777788888777 46999999664 45777777765432 3333 3455699
Q ss_pred EEEE------------EEeeCccccccHHHHHHHHHHhcccC-CcceEEeeeee
Q psy10019 188 KMVL------------YIKEDQAEYLEEKKIKEIVKKHSQFI-GYPIKLLVEKE 228 (388)
Q Consensus 188 ~I~l------------~Lk~~~~e~~~~~~i~~~i~kys~~l-~~PI~i~~~~~ 228 (388)
+|.| +|+....+| .+|.++|++|+-.- .+-+.++.++.
T Consensus 145 tVeV~dLF~NtPaRrKflks~~~E~---~~i~~vv~r~ALahp~I~F~l~~~gk 195 (638)
T COG0323 145 TVEVRDLFYNTPARRKFLKSEKTEF---GHITELINRYALAHPDISFSLSHNGK 195 (638)
T ss_pred EEEehHhhccChHHHHhhcccHHHH---HHHHHHHHHHHhcCCCeEEEEEECCc
Confidence 9999 366666655 89999999997553 45566666555
No 12
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.59 E-value=1.1e-14 Score=146.18 Aligned_cols=154 Identities=22% Similarity=0.296 Sum_probs=110.3
Q ss_pred CCCc----hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHHHhhc
Q psy10019 41 YSNK----EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD-KESRTLTIIDSGIGMTKADLVNNLGTIAK 115 (388)
Q Consensus 41 Ys~~----~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~V~DNG~GMs~edl~~~l~~Ig~ 115 (388)
|+++ ...++|||.||+|||.... ..|.++|+|... .+...++|+|||.|++.+.+.+.|+++..
T Consensus 30 f~~p~RsL~~tv~ElV~NSLDA~eeaG-----------ILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~Ly 98 (538)
T COG1389 30 FDGPIRSLTTTVHELVTNSLDACEEAG-----------ILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLY 98 (538)
T ss_pred CCCchhHHHHHHHHHHhcchhhHHhcC-----------CCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhc
Confidence 5565 4689999999999998532 346677777654 44577999999999999999999999999
Q ss_pred cCchhHHHHHhcCCCCccccccchhhhhhhhc-----cCeEEEEeecCC-CeeEEEEEecC---Cceeee-c--CCCCCC
Q psy10019 116 SGTKAFMEALQAGADISMIGQFGVGFYSAYLV-----ADKVTVHSKHND-DEQYIWESSAG---GSFTIK-P--DHGEQL 183 (388)
Q Consensus 116 S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v-----~d~v~V~Sk~~~-~~~~~w~~~~~---~~~~i~-~--~~~~~~ 183 (388)
|++ |.. ..+..||+|||..++.++ +..+.|.|++.+ ...+.++...+ ++-.|. . .+....
T Consensus 99 gSK--fh~------~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~ 170 (538)
T COG1389 99 GSK--FHR------NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGG 170 (538)
T ss_pred cch--hhh------hhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCC
Confidence 876 422 246789999998666554 589999999876 34555544322 222222 2 223456
Q ss_pred CCCcEEEEEEeeCccccccHHH-HHHHHHHhcc
Q psy10019 184 GRGTKMVLYIKEDQAEYLEEKK-IKEIVKKHSQ 215 (388)
Q Consensus 184 ~~GT~I~l~Lk~~~~e~~~~~~-i~~~i~kys~ 215 (388)
++||+|.|+++..+. -...+ +.+|+++-+-
T Consensus 171 ~hGT~Vel~~~~~~~--~~~~qgi~eYlkrtai 201 (538)
T COG1389 171 WHGTRVELELKGVWY--RAKRQGIYEYLKRTAI 201 (538)
T ss_pred CCceEEEEEecccch--hhcccCHHHHHHHHhh
Confidence 899999999998753 22344 8888888543
No 13
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.52 E-value=9.9e-14 Score=148.45 Aligned_cols=169 Identities=22% Similarity=0.300 Sum_probs=116.6
Q ss_pred HHHHHH-HhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHH
Q psy10019 32 LMSLII-NTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKES-RTLTIIDSGIGMTKADLVNN 109 (388)
Q Consensus 32 ll~lL~-~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~V~DNG~GMs~edl~~~ 109 (388)
++..|+ .....++..+|+|||+||+||+++ .|.|.+..++ ..|+|.|||.||+.+++...
T Consensus 10 v~~~IaAgevI~~~~svvkElveNsiDAgat------------------~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~ 71 (617)
T PRK00095 10 LANQIAAGEVVERPASVVKELVENALDAGAT------------------RIDIEIEEGGLKLIRVRDNGCGISKEDLALA 71 (617)
T ss_pred HHHHhcCcCcccCHHHHHHHHHHHHHhCCCC------------------EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHH
Confidence 455554 566778999999999999999872 4555554333 57999999999999999988
Q ss_pred HHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCC-CeeEEEEEecCCceeeecCCCCCCCCCcE
Q psy10019 110 LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHND-DEQYIWESSAGGSFTIKPDHGEQLGRGTK 188 (388)
Q Consensus 110 l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~-~~~~~w~~~~~~~~~i~~~~~~~~~~GT~ 188 (388)
+..+++|....+ +.+ ......|..|.|+.|+-.++ +++|.|++.+ ..+|.+...++....+.+ .....||+
T Consensus 72 ~~~~~tsKi~~~-~dl---~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~---~~~~~GT~ 143 (617)
T PRK00095 72 LARHATSKIASL-DDL---EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKP---AAHPVGTT 143 (617)
T ss_pred hhccCCCCCCCh-hHh---hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceec---ccCCCCCE
Confidence 877777643322 111 12356899999999988886 7999999865 356777665543222222 33579999
Q ss_pred EEEE------------EeeCccccccHHHHHHHHHHhcccC-CcceEEeeeeee
Q psy10019 189 MVLY------------IKEDQAEYLEEKKIKEIVKKHSQFI-GYPIKLLVEKER 229 (388)
Q Consensus 189 I~l~------------Lk~~~~e~~~~~~i~~~i~kys~~l-~~PI~i~~~~~~ 229 (388)
|++. ++... .+..+|.+++++|+-.- +.-+.+..++..
T Consensus 144 V~v~~LF~n~P~Rrkflk~~~---~e~~~i~~~v~~~Al~~p~i~f~l~~~~~~ 194 (617)
T PRK00095 144 IEVRDLFFNTPARRKFLKSEK---TELGHIDDVVNRLALAHPDVAFTLTHNGKL 194 (617)
T ss_pred EEechhhccCcHHHHhccCcH---HHHHHHHHHHHHHhhcCCCcEEEEEECCEE
Confidence 9994 23222 23368999999998653 345666655543
No 14
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.42 E-value=2.4e-12 Score=134.49 Aligned_cols=158 Identities=23% Similarity=0.274 Sum_probs=105.0
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc---CCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhH
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD---KESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAF 121 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d---~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f 121 (388)
..+|+|||+||+||++... ..+.+.|.+... .+...|.|.|||+||+.+++...|..+..+++ |
T Consensus 38 ~qVLkNLIeNAIDa~~~~g-----------ilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK--~ 104 (535)
T PRK04184 38 YTTVKELVDNSLDACEEAG-----------ILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK--F 104 (535)
T ss_pred HHHHHHHHHHHHHHhhhcC-----------CCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc--c
Confidence 4589999999999997421 112355555542 22356999999999999999988877644433 1
Q ss_pred HHHHhcCCCCccccccchhhhhhhhccC-----eEEEEeecCCCe-eEEEEEec-----CCceeeecC-CCCCCCCCcEE
Q psy10019 122 MEALQAGADISMIGQFGVGFYSAYLVAD-----KVTVHSKHNDDE-QYIWESSA-----GGSFTIKPD-HGEQLGRGTKM 189 (388)
Q Consensus 122 ~~~~~~~~~~~~IG~FGIGf~S~F~v~d-----~v~V~Sk~~~~~-~~~w~~~~-----~~~~~i~~~-~~~~~~~GT~I 189 (388)
. ......|++|+|+.++.+++. .+.|.|+..++. ++.+.... .+. .+... .....++||+|
T Consensus 105 ~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~-i~~~~~~~~~~~~GT~V 177 (535)
T PRK04184 105 H------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPI-ILEREEVDWDRWHGTRV 177 (535)
T ss_pred c------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCe-eccccccCCCCCCCEEE
Confidence 1 112456999999999877753 589999876654 66665431 121 11111 01356799999
Q ss_pred EEEEeeCccccccHHHHHHHHHHhcccCC-cceEEe
Q psy10019 190 VLYIKEDQAEYLEEKKIKEIVKKHSQFIG-YPIKLL 224 (388)
Q Consensus 190 ~l~Lk~~~~e~~~~~~i~~~i~kys~~l~-~PI~i~ 224 (388)
.+.+..++. ....+|.++|++++-.-| +-|.+.
T Consensus 178 ~V~l~~~~~--~~~~~I~e~i~r~Al~nP~~~~~l~ 211 (535)
T PRK04184 178 ELEIEGDWY--RAKQRIYEYLKRTAIVNPHARITFK 211 (535)
T ss_pred EEEECCcCh--hhHHHHHHHHHHHHHhCCCeEEEEE
Confidence 999987653 236889999999986543 344444
No 15
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.31 E-value=2.4e-11 Score=125.84 Aligned_cols=159 Identities=20% Similarity=0.216 Sum_probs=102.3
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKE-SRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~ 124 (388)
.+++|||.||+||++... ..+.+.|.+..... ...|+|.|||.||+.+++...|..+.++++- .
T Consensus 31 ~VlkELVeNAIDA~~~~g-----------~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~--~-- 95 (488)
T TIGR01052 31 TVIHELVTNSLDACEEAG-----------ILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKF--H-- 95 (488)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcc--c--
Confidence 689999999999987311 01234444443222 2479999999999999999888876555431 1
Q ss_pred HhcCCCCccccccchhhhhhhhccC-----eEEEEeecCCCe-eEEEEEe-----cCCc-eeeecCCCCCCCCCcEEEEE
Q psy10019 125 LQAGADISMIGQFGVGFYSAYLVAD-----KVTVHSKHNDDE-QYIWESS-----AGGS-FTIKPDHGEQLGRGTKMVLY 192 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S~F~v~d-----~v~V~Sk~~~~~-~~~w~~~-----~~~~-~~i~~~~~~~~~~GT~I~l~ 192 (388)
......|.+|+|+.++.+++. .++|.|+..+.. ++.+... .++. ....+. ....++||+|++.
T Consensus 96 ----~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~-~~~~~~GT~V~v~ 170 (488)
T TIGR01052 96 ----RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEW-NKPGWRGTRIELE 170 (488)
T ss_pred ----cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeec-CCCCCCceEEEEE
Confidence 123456999999998877764 499999987543 4555543 1222 122222 1222689999998
Q ss_pred EeeCccccccHHHHHHHHHHhcccCC-cceEEee
Q psy10019 193 IKEDQAEYLEEKKIKEIVKKHSQFIG-YPIKLLV 225 (388)
Q Consensus 193 Lk~~~~e~~~~~~i~~~i~kys~~l~-~PI~i~~ 225 (388)
+...+.. ....+|.+++++++-.-| +-|.+..
T Consensus 171 f~~~~~r-~~k~~i~e~l~~~Al~nP~~~i~l~~ 203 (488)
T TIGR01052 171 FKGVSYR-RSKQGVYEYLRRTAVANPHAKIVLVD 203 (488)
T ss_pred ECCceee-ccHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 6554321 135789999999985543 3455443
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.28 E-value=3.2e-11 Score=129.10 Aligned_cols=159 Identities=18% Similarity=0.251 Sum_probs=104.7
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|+|||.||+||+.... ..+.+.|.+........|.|.|||+||+.+++...|..+.++++ |..
T Consensus 49 tVLkNLIeNALDAs~~~g-----------ilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f~~-- 113 (795)
T PRK14868 49 TAVKEAVDNALDATEEAG-----------ILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--FHA-- 113 (795)
T ss_pred HHHHHHHHHHHHhCcccC-----------CCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--ccc--
Confidence 689999999999986310 01234445443322357999999999999999999988876543 211
Q ss_pred hcCCCCccccccchhhhhhhhcc-----CeEEEEeecCCC-eeEEEE--EecCC-ceee--ecCCCCCCCCCcEEEEEEe
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA-----DKVTVHSKHNDD-EQYIWE--SSAGG-SFTI--KPDHGEQLGRGTKMVLYIK 194 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~-----d~v~V~Sk~~~~-~~~~w~--~~~~~-~~~i--~~~~~~~~~~GT~I~l~Lk 194 (388)
.....|+.|+|+.++.+++ ..+.|.|+..+. .++.|. ...+. .-.| ........++||+|+|.|.
T Consensus 114 ----~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~Lf 189 (795)
T PRK14868 114 ----REQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELEME 189 (795)
T ss_pred ----cccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEEEE
Confidence 1144689999998877665 458999997653 455444 33331 2122 2111235689999999987
Q ss_pred eCccccccHHHHHHHHHHhcccCC-cceEEeee
Q psy10019 195 EDQAEYLEEKKIKEIVKKHSQFIG-YPIKLLVE 226 (388)
Q Consensus 195 ~~~~e~~~~~~i~~~i~kys~~l~-~PI~i~~~ 226 (388)
.++ ....+|.++|++++---| .-|.+...
T Consensus 190 ~N~---pAR~kI~eyl~r~Al~nP~a~f~l~~~ 219 (795)
T PRK14868 190 ANM---RARQQLHDYIKHTAVVNPHARIELREP 219 (795)
T ss_pred ccC---chhhhHHHHHHHHHhhCCCeEEEEEEC
Confidence 643 456889999999875543 24554444
No 17
>KOG1979|consensus
Probab=99.18 E-value=1.6e-10 Score=119.10 Aligned_cols=154 Identities=24% Similarity=0.341 Sum_probs=105.7
Q ss_pred HHHHHH-HhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHH
Q psy10019 32 LMSLII-NTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKES-RTLTIIDSGIGMTKADLVNN 109 (388)
Q Consensus 32 ll~lL~-~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~V~DNG~GMs~edl~~~ 109 (388)
++..|+ -.+...|..+|+|||.|++||.+ ..|.|....++ +.|.|.|||.|+-++||.-.
T Consensus 15 VVNRIAAGEVI~RP~NAlKEliENSLDA~S------------------T~I~V~vk~GGLKLlQisDnG~GI~reDl~il 76 (694)
T KOG1979|consen 15 VVNRIAAGEVIQRPVNALKELIENSLDANS------------------TSIDVLVKDGGLKLLQISDNGSGIRREDLPIL 76 (694)
T ss_pred HHhHhhccchhhchHHHHHHHHhccccCCC------------------ceEEEEEecCCeEEEEEecCCCccchhhhHHH
Confidence 344554 55677889999999999999976 47777776666 56799999999999999644
Q ss_pred HHHhhccCchhHHHHHhcCCCCccccccch---hhhhhhhccCeEEEEeecCCCe-eEEEEEecCCceeeecCCCCCCCC
Q psy10019 110 LGTIAKSGTKAFMEALQAGADISMIGQFGV---GFYSAYLVADKVTVHSKHNDDE-QYIWESSAGGSFTIKPDHGEQLGR 185 (388)
Q Consensus 110 l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGI---Gf~S~F~v~d~v~V~Sk~~~~~-~~~w~~~~~~~~~i~~~~~~~~~~ 185 (388)
-.+..+|.-..| .|...+..||. .+.|.-- .-+|+|+|+..++. +|. .++.++...-.+. +.....
T Consensus 77 CeRftTSKL~kF-------EDL~~lsTyGFRGEALASiSh-VA~VtV~TK~~~~~cayr-asY~DGkm~~~pK-pcAgk~ 146 (694)
T KOG1979|consen 77 CERFTTSKLTKF-------EDLFSLSTYGFRGEALASISH-VAHVTVTTKTAEGKCAYR-ASYRDGKMIATPK-PCAGKQ 146 (694)
T ss_pred HHHhhhhhcchh-------HHHHhhhhcCccHHHHhhhhh-eeEEEEEEeecCceeeeE-EEeeccccccCCC-CccCCC
Confidence 445666643334 23344444544 4555444 46799999988664 333 2344454332332 456789
Q ss_pred CcEEEEE------------EeeCccccccHHHHHHHHHHhccc
Q psy10019 186 GTKMVLY------------IKEDQAEYLEEKKIKEIVKKHSQF 216 (388)
Q Consensus 186 GT~I~l~------------Lk~~~~e~~~~~~i~~~i~kys~~ 216 (388)
||.|++. |+....+| .+|..++.+|+-|
T Consensus 147 GT~I~vedLFYN~~~Rrkal~~~~EE~---~ki~dlv~ryAIH 186 (694)
T KOG1979|consen 147 GTIITVEDLFYNMPTRRKALRNHAEEY---RKIMDLVGRYAIH 186 (694)
T ss_pred ceEEEehHhhccCHHHHHHhcCcHHHH---HHHHHHHHHHhee
Confidence 9999983 56655655 8999999999866
No 18
>KOG1978|consensus
Probab=99.02 E-value=7.7e-10 Score=116.27 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=100.0
Q ss_pred HHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHHHh
Q psy10019 35 LIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKES-RTLTIIDSGIGMTKADLVNNLGTI 113 (388)
Q Consensus 35 lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~V~DNG~GMs~edl~~~l~~I 113 (388)
+-+.+...+..++|+|||.||+||+++ .|+|.++..+ ..|.|.|||+|++..+..-.-..+
T Consensus 12 I~S~qvI~sl~sAVKELvENSiDAGAT------------------~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh 73 (672)
T KOG1978|consen 12 ICSSQVITSLVSAVKELVENSIDAGAT------------------AIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKH 73 (672)
T ss_pred cccCCeeccHHHHHHHHHhcCcccCCc------------------eeeEecCCCCcceEEEecCCCCCCccchhhhhhhh
Confidence 334566667789999999999999983 5666665444 679999999999999985422234
Q ss_pred hccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCC-CeeEEEEEecCCceeeecCCCCCCCCCcEEEEE
Q psy10019 114 AKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHND-DEQYIWESSAGGSFTIKPDHGEQLGRGTKMVLY 192 (388)
Q Consensus 114 g~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~-~~~~~w~~~~~~~~~i~~~~~~~~~~GT~I~l~ 192 (388)
-+|.-.+|-. -......|..|=.+-|.-.+ ..|.|.|++.+ ..+..|..+..+... .......++||+|.+.
T Consensus 74 ~TSKi~~f~D----l~~l~T~GFRGEALSsLCa~-~dv~I~Trt~~~~vgt~l~~Dh~G~I~--~k~~~ar~~GTTV~v~ 146 (672)
T KOG1978|consen 74 TTSKIVSFAD----LAVLFTLGFRGEALSSLCAL-GDVMISTRSHSAKVGTRLVYDHDGHII--QKKPVARGRGTTVMVR 146 (672)
T ss_pred hhhcccchhh----hhhhhhhhhHHHHHHhhhhc-cceEEEEeeccCccceeEEEccCCcee--eeccccCCCCCEEEHh
Confidence 4444334421 11124456666566344444 45889998864 357888887766543 2223567899999983
Q ss_pred -EeeC----cccc-----ccHHHHHHHHHHhccc
Q psy10019 193 -IKED----QAEY-----LEEKKIKEIVKKHSQF 216 (388)
Q Consensus 193 -Lk~~----~~e~-----~~~~~i~~~i~kys~~ 216 (388)
|-.. ..+| -...++..++..||-.
T Consensus 147 ~LF~tLPVR~kef~r~~Kref~k~i~li~~y~li 180 (672)
T KOG1978|consen 147 QLFSTLPVRRKEFQRNIKRKFVKLISLIQAYALI 180 (672)
T ss_pred hhcccCCCchHHhhcchhhhhhhHHhhHHHHHhh
Confidence 1110 1111 1226788888888755
No 19
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.99 E-value=5e-09 Score=111.88 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=96.1
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKE-SRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~ 124 (388)
.+++|||.||+||++... ..+.+.|.+..... ...|.|.|||.||+.+++...|..+.++++ |.
T Consensus 39 ~VVkELVeNAIDA~~~~g-----------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK--~~-- 103 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-----------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSK--MH-- 103 (659)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCc--cc--
Confidence 579999999999997311 11234555443222 245999999999999999988877433322 11
Q ss_pred HhcCCCCccccccchhhhhhhhcc-----CeEEEEeecCCCeeE--EEEEec---CCceeeecCCCCCCCCCcEEEEEEe
Q psy10019 125 LQAGADISMIGQFGVGFYSAYLVA-----DKVTVHSKHNDDEQY--IWESSA---GGSFTIKPDHGEQLGRGTKMVLYIK 194 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S~F~v~-----d~v~V~Sk~~~~~~~--~w~~~~---~~~~~i~~~~~~~~~~GT~I~l~Lk 194 (388)
.-....|++|+|+.++.+++ ..+.|.|+..++..+ .|...- ++.. +........++||+|++.++
T Consensus 104 ----~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I-~~~~~~~~~~~GT~Ie~~V~ 178 (659)
T PRK14867 104 ----RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDI-VSHKVREGFWRGTRVEGEFK 178 (659)
T ss_pred ----ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCee-cccccCCCCCCCcEEEEEEe
Confidence 11255689999998776554 446899987655433 222221 2221 11111234689999996554
Q ss_pred eCccccccHHHHHHHHHHhcccCC-cceEEeee
Q psy10019 195 EDQAEYLEEKKIKEIVKKHSQFIG-YPIKLLVE 226 (388)
Q Consensus 195 ~~~~e~~~~~~i~~~i~kys~~l~-~PI~i~~~ 226 (388)
+-... ..+.+|.+++++++---| .-|.+...
T Consensus 179 dLFyn-R~E~~i~e~l~r~ALanP~i~f~l~~~ 210 (659)
T PRK14867 179 EVTYN-RREQGPFEYLRRISLSTPHAKITLKDP 210 (659)
T ss_pred eceec-hhhHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 31111 112348999999875433 35555554
No 20
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.99 E-value=2.6e-09 Score=114.47 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=102.3
Q ss_pred CchHHHHHHHhchHh---HhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHH
Q psy10019 43 NKEIFLRELISNSSD---ALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------LVNNLG 111 (388)
Q Consensus 43 ~~~~~lRELIqNA~D---A~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l~~~l~ 111 (388)
++...|.|||.||+| |+. --+|.|.++.+ ..|+|.|||.||+.++ +.-.|+
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag~-----------------a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t 91 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAGF-----------------ASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILT 91 (625)
T ss_pred CcceeehhhhhcccchhhcCC-----------------CCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhh
Confidence 347899999999999 631 13566666554 7999999999999988 766674
Q ss_pred HhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCc-eeeecCCCC-CCCCCcEE
Q psy10019 112 TIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGS-FTIKPDHGE-QLGRGTKM 189 (388)
Q Consensus 112 ~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~-~~i~~~~~~-~~~~GT~I 189 (388)
..-.+++ | ....-....|..|+|+.++-.++..++|.|+..+.. |.+...++.. -.+..+... ....||+|
T Consensus 92 ~lhagsK--~----~~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V 164 (625)
T TIGR01055 92 TLHAGGK--F----SNKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSV 164 (625)
T ss_pred cccccCC--C----CCCcceecCCCcchhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEE
Confidence 4434433 1 111112568999999999999999999999976543 5555544321 111111112 34589999
Q ss_pred EEEEeeCc--cccccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 190 VLYIKEDQ--AEYLEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 190 ~l~Lk~~~--~e~~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
++.-.... ..-++...|.+.+++++-.. ..-|+++.++
T Consensus 165 ~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~der 205 (625)
T TIGR01055 165 HFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDEV 205 (625)
T ss_pred EEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeecC
Confidence 98422110 01135578899999886543 3556666544
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.96 E-value=3e-09 Score=114.26 Aligned_cols=161 Identities=18% Similarity=0.244 Sum_probs=104.3
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHH--------HHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVN--------NLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~--------~l~~Ig~S 116 (388)
...|+|||.||+|++.. . .-.+|.|.++.+ ..|+|.|||.||+.+.+.. .|+++-.+
T Consensus 39 ~~lv~EivdNaiDe~~a-g-------------~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhag 103 (631)
T PRK05559 39 HHLVQEVIDNSVDEALA-G-------------HGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAG 103 (631)
T ss_pred hhhhhhhhccccchhhc-C-------------CCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeecccc
Confidence 57999999999999742 1 123566666544 4899999999999998876 67664444
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCc-eeeecCCCCC-CCCCcEEEEEEe
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGS-FTIKPDHGEQ-LGRGTKMVLYIK 194 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~-~~i~~~~~~~-~~~GT~I~l~Lk 194 (388)
++ |.. .......|..|+|..++-.++..++|+|+..+. .|.+....+.. -.+....... ..+||+|++...
T Consensus 104 sK--f~~----~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~-~~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~PD 176 (631)
T PRK05559 104 GK--FSN----KAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGK-VYRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWPD 176 (631)
T ss_pred Cc--cCC----ccccccCcccccchhhhhhheeeEEEEEEeCCe-EEEEEEECCcCccCccccccccCCCCCcEEEEEEC
Confidence 43 211 111256899999999999999999999997543 34444443211 1111111122 579999999532
Q ss_pred eCc--cccccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 195 EDQ--AEYLEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 195 ~~~--~e~~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
... ..-++...|.+.+++++-.. ..-|.++.++
T Consensus 177 ~~iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~ 212 (631)
T PRK05559 177 PKIFDSPKFSPERLKERLRSKAFLLPGLTITLNDER 212 (631)
T ss_pred HHHcCCcccCHHHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 211 01145678889999887443 3566666665
No 22
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.88 E-value=1.6e-08 Score=109.17 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=95.4
Q ss_pred hHHHHHHHhchHh---HhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHh
Q psy10019 45 EIFLRELISNSSD---ALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------LVNNLGTI 113 (388)
Q Consensus 45 ~~~lRELIqNA~D---A~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l~~~l~~I 113 (388)
...|+|||.||+| |+- ...|.|.++.+ ..|+|.|||.||+.+- +...|+.+
T Consensus 32 ~~vv~Elv~NaiDe~~ag~-----------------a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l 93 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAMAGY-----------------CDTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVL 93 (654)
T ss_pred HhhhHHhhhccccccccCC-----------------CCEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeee
Confidence 4689999999999 431 13566666543 4599999999999751 11123333
Q ss_pred hccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCcee-eecCCCCCCCCCcEEEEE
Q psy10019 114 AKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFT-IKPDHGEQLGRGTKMVLY 192 (388)
Q Consensus 114 g~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~-i~~~~~~~~~~GT~I~l~ 192 (388)
-.+++ |- +.......|..|+|+.|+-.++..++|+|+..+. .|.+....+..-. +.. .+.....||+|+..
T Consensus 94 ~ag~k--f~----~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~-~~~~~~~~G~~~~~l~~-~~~~~~~GT~V~F~ 165 (654)
T TIGR01059 94 HAGGK--FD----KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGK-IYRQEFERGIPLGPLEV-VGETKKTGTTVRFW 165 (654)
T ss_pred cccCc--cC----CCcceecCCccchhHHHHHHhcCeEEEEEEECCe-EEEEEEeCCCcccCcee-ccCCCCCCcEEEEE
Confidence 33333 21 1112356899999999999999999999997653 3554444332111 111 12355799999954
Q ss_pred EeeCcccc----ccHHHHHHHHHHhcccCCcceEEeeeee
Q psy10019 193 IKEDQAEY----LEEKKIKEIVKKHSQFIGYPIKLLVEKE 228 (388)
Q Consensus 193 Lk~~~~e~----~~~~~i~~~i~kys~~l~~PI~i~~~~~ 228 (388)
- +...| ++...|.+.++.++- +.--|.+....+
T Consensus 166 p--dp~~F~~~~~e~~~i~~rl~~~A~-l~pgl~i~l~~e 202 (654)
T TIGR01059 166 P--DPEIFETTEFDFDILAKRLRELAF-LNSGVKISLEDE 202 (654)
T ss_pred E--ChHHhCCcccCHHHHHHHHHHhhc-cCCCeEEEEEee
Confidence 2 22222 356889999999883 333344444433
No 23
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.86 E-value=7.5e-09 Score=110.60 Aligned_cols=157 Identities=20% Similarity=0.254 Sum_probs=96.0
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHHHhhccC
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLV--------NNLGTIAKSG 117 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~--------~~l~~Ig~S~ 117 (388)
..|+|||.||+||+.. ++-..|.|.++.++ .|+|.|||.||+.+... ..|..+-+|+
T Consensus 4 ~~v~ElvdNAiD~~~~--------------g~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~ 68 (594)
T smart00433 4 HLVDEIVDNAADEALA--------------GYMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGG 68 (594)
T ss_pred EEEeeehhcccchhcc--------------CCCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccC
Confidence 3689999999999742 11236666666554 99999999999964321 1222222333
Q ss_pred chhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCceeeec--CCCCCCCCCcEEEEEEee
Q psy10019 118 TKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKP--DHGEQLGRGTKMVLYIKE 195 (388)
Q Consensus 118 k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~i~~--~~~~~~~~GT~I~l~Lk~ 195 (388)
+ | .+.......|..|+|+.++-.++.+++|+|+..+. .|.+....++. .+.+ ..+.....||+|+. .+
T Consensus 69 k--f----d~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~-~~~~~~~~~G~-~~~~~~~~~~~~~~GT~V~F--~P 138 (594)
T smart00433 69 K--F----DDDAYKVSGGLHGVGASVVNALSTEFEVEVARDGK-EYKQSFSNNGK-PLSEPKIIGDTKKDGTKVTF--KP 138 (594)
T ss_pred C--C----CCCCccccCCcccchHHHHHHhcCceEEEEEeCCc-EEEEEEeCCCe-ECccceecCCCCCCCcEEEE--EE
Confidence 2 2 11112346799999999999999999999997653 35444432221 1111 01234579999995 34
Q ss_pred Ccccc-----ccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 196 DQAEY-----LEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 196 ~~~e~-----~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
+...| .+...|.+.++.++-.. ..-|.++.++
T Consensus 139 d~~~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~der 176 (594)
T smart00433 139 DLEIFGMTTDDDFELLKRRLRELAFLNKGVKITLNDER 176 (594)
T ss_pred CHHHhCCcccchHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 43333 23477888888886443 3455555443
No 24
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.84 E-value=1.9e-08 Score=108.23 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=96.6
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------LVNNLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l~~~l~~Ig~S 116 (388)
...|+|||.||+|.... +.-..|.|.++.+ ..|+|.|||.||+.+. +...|..+-++
T Consensus 39 ~~~v~ElvdNaiDe~~a--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag 103 (638)
T PRK05644 39 HHLVYEIVDNSIDEALA--------------GYCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAG 103 (638)
T ss_pred HhhhHHhhhcccccccC--------------CCCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeeccc
Confidence 36999999999993210 0113566666554 4999999999999852 21123333233
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCce-eeecCCCCCCCCCcEEEEEEee
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSF-TIKPDHGEQLGRGTKMVLYIKE 195 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~-~i~~~~~~~~~~GT~I~l~Lk~ 195 (388)
++ | .+..-....|..|+|+.++-.++..++|+|+..+. .|......+..- .+... +.....||+|+. .+
T Consensus 104 ~k--f----d~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~-~~~~~~~~G~~~~~~~~~-~~~~~~GT~I~F--~P 173 (638)
T PRK05644 104 GK--F----GGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK-IYYQEYERGVPVTPLEVI-GETDETGTTVTF--KP 173 (638)
T ss_pred Cc--c----CCCcccccCCccccchhhhhheeceEEEEEEeCCc-EEEEEEECCeEccCcccc-CCcCCCCcEEEE--EE
Confidence 32 2 11111246899999999999999999999996543 565555543211 11211 123568999996 33
Q ss_pred Ccccc----ccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 196 DQAEY----LEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 196 ~~~e~----~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
+...| ++...|.+.++.++-.. ..-|.++.++
T Consensus 174 d~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er 210 (638)
T PRK05644 174 DPEIFETTEFDYDTLATRLRELAFLNKGLKITLTDER 210 (638)
T ss_pred CHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEEecc
Confidence 33222 45678889999887443 3455555443
No 25
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.76 E-value=3.2e-08 Score=107.64 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=96.9
Q ss_pred hHHHHHHHhchHh---HhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHH----------HHHHHHH
Q psy10019 45 EIFLRELISNSSD---ALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKA----------DLVNNLG 111 (388)
Q Consensus 45 ~~~lRELIqNA~D---A~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~e----------dl~~~l~ 111 (388)
...|+|||.||+| |+- -..|.|.++.+ ..|+|.|||.||+.+ ++ .|+
T Consensus 39 hhlv~EivdNaiDE~~AG~-----------------a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~El--vlt 98 (756)
T PRK14939 39 HHMVYEVVDNAIDEALAGH-----------------CDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEV--IMT 98 (756)
T ss_pred hhhhhHhhcccccccccCC-----------------CCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhh--eee
Confidence 4799999999999 541 13566666654 499999999999987 44 344
Q ss_pred HhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCc-eeeecCCCCCCCCCcEEE
Q psy10019 112 TIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGS-FTIKPDHGEQLGRGTKMV 190 (388)
Q Consensus 112 ~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~GT~I~ 190 (388)
.+-.++| |- ...-...-|.-|+|..++-.++..++|+|+..+. .|......+.. -.+... +.....||+|+
T Consensus 99 ~lhAggK--fd----~~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk-~~~q~f~~G~~~~~l~~~-g~~~~~GT~V~ 170 (756)
T PRK14939 99 VLHAGGK--FD----QNSYKVSGGLHGVGVSVVNALSEWLELTIRRDGK-IHEQEFEHGVPVAPLKVV-GETDKTGTEVR 170 (756)
T ss_pred eecccCC--CC----CCcccccCCccCccceEeehccCeEEEEEEeCCe-EEEEEEecCccccCcccc-CCcCCCCcEEE
Confidence 3333433 21 1111235799999999999999999999996553 35444443321 112221 22356999999
Q ss_pred EEEeeCc--cccccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 191 LYIKEDQ--AEYLEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 191 l~Lk~~~--~e~~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
+.-.... ..-++...|.+.++.++-.. +.-|+++.++
T Consensus 171 F~PD~~iF~~~~~~~~~i~~rl~elA~lnpgl~i~l~der 210 (756)
T PRK14939 171 FWPSPEIFENTEFDYDILAKRLRELAFLNSGVRIRLKDER 210 (756)
T ss_pred EEECHHHcCCcccCHHHHHHHHHHHhhcCCCCEEEEeccC
Confidence 9422111 11145678888888887332 3455555554
No 26
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.67 E-value=1.3e-07 Score=78.20 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=59.0
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.||++||+++.... ..+.|.+..+.....|+|.|||.||+.+++...+.....+.
T Consensus 8 ~il~~ll~Na~~~~~~~--------------~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~-------- 65 (111)
T PF02518_consen 8 QILSELLDNAIKHSPEG--------------GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSD-------- 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHT--------------SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSS--------
T ss_pred HHHHHHHHHHHHHhcCC--------------CEEEEEEEEecCeEEEEEEeccccccccccccchhhccccc--------
Confidence 58999999999998731 34666666666678899999999999999976554332221
Q ss_pred hcCCCCccccccchhhhhhhhccCe
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVADK 150 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d~ 150 (388)
.+....+.+|+|++.+..+++.
T Consensus 66 ---~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 66 ---KSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp ---SSSGGSSSSSHHHHHHHHHHHH
T ss_pred ---ccccccCCCChHHHHHHHHHHH
Confidence 1235567799999988877653
No 27
>KOG1977|consensus
Probab=98.33 E-value=4.2e-07 Score=95.87 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=78.9
Q ss_pred CchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHH
Q psy10019 43 NKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFM 122 (388)
Q Consensus 43 ~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~ 122 (388)
+-..+|+||++|++||.++ .|.|.++-....+.|.|||.||+++||...=.+.++|. |.
T Consensus 21 sla~~VeElv~NSiDA~At------------------~V~v~V~~~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK---~h 79 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEAT------------------CVAVRVNMETFSVQVIDDGFGMGRDDLEKLGNRYFTSK---CH 79 (1142)
T ss_pred HHHHHHHHHHhhccccCce------------------EEEEEecCceeEEEEEecCCCccHHHHHHHHhhhhhhh---ce
Confidence 4467999999999999883 45555555678999999999999999953222334442 21
Q ss_pred HHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCC-eeEEE-EEecCCceeeecCCCCCCCCCcEEEEE
Q psy10019 123 EALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDD-EQYIW-ESSAGGSFTIKPDHGEQLGRGTKMVLY 192 (388)
Q Consensus 123 ~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~-~~~~w-~~~~~~~~~i~~~~~~~~~~GT~I~l~ 192 (388)
...........|..|-.++|.-=++. +.|+|+..+. .+|.. .+-.+.....-+++..+...||+|+++
T Consensus 80 -~~ndl~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 80 -SVNDLENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVY 149 (1142)
T ss_pred -eccccccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeH
Confidence 11111224567777777887665544 5677776542 33321 111122223333334677899999995
No 28
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.99 E-value=5.4e-05 Score=59.13 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=58.8
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+++||+.||++++.. ....+.|.+..+.....|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4789999999999752 012355666555445679999999999999987655433111
Q ss_pred hcCCCCccccccchhhhhhhhccC----eEEEEeec
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVAD----KVTVHSKH 157 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d----~v~V~Sk~ 157 (388)
......+.+|+|++.+-.+++ .+.+.+..
T Consensus 61 ---~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 61 ---SRSRKGGGTGLGLSIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred ---CCCCCCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 112345688999988777765 66666554
No 29
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.82 E-value=7.6e-05 Score=80.58 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=94.2
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------LVNNLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l~~~l~~Ig~S 116 (388)
...+.|+|.||+|-... +.--.|.|.++. +..|+|.|||.||+-+- ++-.|+.+-++
T Consensus 36 ~hlv~EIvdNavDE~~a--------------g~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaG 100 (637)
T TIGR01058 36 HHLVWEIVDNSVDEVLA--------------GYADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAG 100 (637)
T ss_pred heehhhhhcchhhhhhc--------------CCCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEeccc
Confidence 45789999999995321 012356666663 46999999999998642 11123333334
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCceeeecC--CCCCCCCCcEEEEEEe
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPD--HGEQLGRGTKMVLYIK 194 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~i~~~--~~~~~~~GT~I~l~Lk 194 (388)
++ |- ...-...-|.-|+|...+=.+++.++|.++..+ ..|.-....++. .+.+. .+....+||+|+..-.
T Consensus 101 gk--fd----~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~g-k~~~q~f~~Gg~-~~~~l~~~~~~~~~GT~V~F~PD 172 (637)
T TIGR01058 101 GK--FD----QGGYKTAGGLHGVGASVVNALSSWLEVTVKRDG-QIYQQRFENGGK-IVQSLKKIGTTKKTGTLVHFHPD 172 (637)
T ss_pred Cc--CC----CCcccccCCcccccccccceeeceEEEEEEECC-EEEEEEEecCCc-CcCCcccccCCCCCceEEEEEeC
Confidence 43 20 011124569999999999999999999998654 223222222211 11111 1233568999998643
Q ss_pred eCcc--ccccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 195 EDQA--EYLEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 195 ~~~~--e~~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
.... .-++.+.|..-++..+-.. ..-|+++.++
T Consensus 173 ~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~der 208 (637)
T TIGR01058 173 PTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTDKR 208 (637)
T ss_pred HHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 3221 1145677777777776333 3566666544
No 30
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.68 E-value=0.00024 Score=56.32 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=54.3
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++.||+.||++++.. ...+.|.+..+.....|.|.|+|.||+.+.+...+.....+ .
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~-~------- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRT-D------- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEEC-C-------
Confidence 4688999999888652 12356666665556789999999999999887655332211 1
Q ss_pred hcCCCCccccccchhhhhhhhccCe
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVADK 150 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d~ 150 (388)
......+++|+|+..+-.++..
T Consensus 66 ---~~~~~~~~~g~gl~~~~~~~~~ 87 (111)
T smart00387 66 ---GRSRKIGGTGLGLSIVKKLVEL 87 (111)
T ss_pred ---CCCCCCCcccccHHHHHHHHHH
Confidence 0123456789999987766553
No 31
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.60 E-value=0.00025 Score=70.19 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=49.8
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++..||.||+.+.. ....+.|.+..+.+...|.|.|||.||+.+++...+...-+.
T Consensus 250 ~il~nLi~NA~k~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 306 (356)
T PRK10755 250 LLLRNLVENAHRYSP--------------EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRM--------- 306 (356)
T ss_pred HHHHHHHHHHHhhCC--------------CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeC---------
Confidence 468888888877742 112356666555555789999999999999996544321110
Q ss_pred hcCCCCccccccchhhhhhhhccC
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVAD 149 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d 149 (388)
+ ..-+.+|+|++-|-.+++
T Consensus 307 ----~-~~~~g~GlGL~i~~~i~~ 325 (356)
T PRK10755 307 ----D-SRYGGIGLGLSIVSRITQ 325 (356)
T ss_pred ----C-CCCCCcCHHHHHHHHHHH
Confidence 0 123568999988766544
No 32
>PRK10604 sensor protein RstB; Provisional
Probab=97.58 E-value=0.00022 Score=73.17 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=51.9
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++..||.||+.++. ..+.|.+..+.+...|.|.|||.||+.+++.+.|....+...
T Consensus 322 ~vl~NLl~NAik~~~----------------~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~------- 378 (433)
T PRK10604 322 RVLDNLLNNALRYAH----------------SRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDP------- 378 (433)
T ss_pred HHHHHHHHHHHHhCC----------------CeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCC-------
Confidence 368888899887742 235677666666678999999999999999766544332211
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
......|.+|+|++-+-.++
T Consensus 379 ---~~~~~~~g~GLGL~ivk~i~ 398 (433)
T PRK10604 379 ---SRDRATGGCGLGLAIVHSIA 398 (433)
T ss_pred ---CCCCCCCCccchHHHHHHHH
Confidence 11123467899998765543
No 33
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.55 E-value=0.00034 Score=71.38 Aligned_cols=79 Identities=11% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++..||.||+.+... +..+.|.+..+.+...|+|.|||.||+.+++.+.|....+..+
T Consensus 320 ~vl~NLl~NAik~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~------- 378 (430)
T PRK11006 320 SAISNLVYNAVNHTPE--------------GTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDK------- 378 (430)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccC-------
Confidence 4788999999988531 1234555555545567999999999999999765543222111
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
......|..|+|++-|-.++
T Consensus 379 ---~~~~~~~G~GLGL~ivk~iv 398 (430)
T PRK11006 379 ---ARSRQTGGSGLGLAIVKHAL 398 (430)
T ss_pred ---CCCCCCCCCchHHHHHHHHH
Confidence 01123467899998876653
No 34
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.50 E-value=0.00042 Score=70.78 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=50.7
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHh
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ 126 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~ 126 (388)
++..||.||+.+.. ....+.|.+..+.+...|.|.|||.||+.+++.+.|...-++..
T Consensus 356 vl~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~-------- 413 (466)
T PRK10549 356 LFNNLLENSLRYTD--------------SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEG-------- 413 (466)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCC--------
Confidence 66788888877743 12345666655555567899999999999998765543322211
Q ss_pred cCCCCccccccchhhhhhhhccC
Q psy10019 127 AGADISMIGQFGVGFYSAYLVAD 149 (388)
Q Consensus 127 ~~~~~~~IG~FGIGf~S~F~v~d 149 (388)
......|..|+|++-+-.+++
T Consensus 414 --~~~~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 414 --SRNRASGGSGLGLAICLNIVE 434 (466)
T ss_pred --CcCCCCCCCcHHHHHHHHHHH
Confidence 112345678999987665543
No 35
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.50 E-value=0.00047 Score=70.12 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=49.5
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHh
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ 126 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~ 126 (388)
++.+||+||+.+.. ..+.|.+..+.+...|+|.|||.||+.+++...|....+...
T Consensus 357 ~l~nli~NA~~~~~----------------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------- 412 (461)
T PRK09470 357 ALENIVRNALRYSH----------------TKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDE-------- 412 (461)
T ss_pred HHHHHHHHHHHhCC----------------CcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCc--------
Confidence 68889999887642 235666666666667999999999999998765543221110
Q ss_pred cCCCCccccccchhhhhhhhc
Q psy10019 127 AGADISMIGQFGVGFYSAYLV 147 (388)
Q Consensus 127 ~~~~~~~IG~FGIGf~S~F~v 147 (388)
......+.+|+|++-+-.+
T Consensus 413 --~~~~~~~g~GlGL~iv~~~ 431 (461)
T PRK09470 413 --ARDRESGGTGLGLAIVENA 431 (461)
T ss_pred --ccCCCCCCcchhHHHHHHH
Confidence 0112346789999875443
No 36
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00026 Score=75.07 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=102.7
Q ss_pred chHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHhhc
Q psy10019 44 KEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------LVNNLGTIAK 115 (388)
Q Consensus 44 ~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l~~~l~~Ig~ 115 (388)
....+.|.|.||+|-.-. ++--.|.|.++ .+..|+|.|||.||+-+. ++-.|..+-+
T Consensus 37 LhHlv~EVvDNsiDEala--------------G~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHA 101 (635)
T COG0187 37 LHHLVWEVVDNSIDEALA--------------GYADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHA 101 (635)
T ss_pred ceeeEeEeeechHhHHhh--------------CcCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEeecc
Confidence 357899999999996431 12246666666 578999999999999765 3334444444
Q ss_pred cCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCc-eeeecCC-CCCCCCCcEEEEEE
Q psy10019 116 SGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGS-FTIKPDH-GEQLGRGTKMVLYI 193 (388)
Q Consensus 116 S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~-~~i~~~~-~~~~~~GT~I~l~L 193 (388)
+|| |-+ +.-...-|.-|+|..-|=.+++.+.|+++..+. -|.-....+.. -.+..+. ......||+|+..-
T Consensus 102 GGK--Fd~----~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk-~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~P 174 (635)
T COG0187 102 GGK--FDN----DSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK-IYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKP 174 (635)
T ss_pred Ccc--cCC----CccEeecCCCccceEEEecccceEEEEEEECCE-EEEEEEeCCCcCCCceecccCCCCCCccEEEEEc
Confidence 554 210 111234689999999999999999999997653 33333332221 1222111 24557899999863
Q ss_pred eeCc---cccccHHHHHHHHHHhcccC-CcceEEeeeeeeee
Q psy10019 194 KEDQ---AEYLEEKKIKEIVKKHSQFI-GYPIKLLVEKEREK 231 (388)
Q Consensus 194 k~~~---~e~~~~~~i~~~i~kys~~l-~~PI~i~~~~~~~~ 231 (388)
.... .+ ++...|+.-++.++=.. ..-|.+++++....
T Consensus 175 D~~iF~~~~-f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~ 215 (635)
T COG0187 175 DPEIFGETE-FDYEILKRRLRELAFLNKGVKITLTDERTGEE 215 (635)
T ss_pred ChHhcCCcc-cCHHHHHHHHHHHhccCCCCEEEEEeccCCcc
Confidence 3221 12 46678888888776333 36777776665433
No 37
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.44 E-value=0.00061 Score=78.56 Aligned_cols=162 Identities=15% Similarity=0.236 Sum_probs=95.4
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL--------VNNLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl--------~~~l~~Ig~S 116 (388)
...+.|+|.||+|-.... +.-..|.|.++.++..|+|.|||.||+-+.- +-.|+++-+|
T Consensus 79 ~kifdEIldNAvDe~~r~-------------g~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAG 145 (1465)
T PLN03237 79 YKIFDEILVNAADNKQRD-------------PKMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTS 145 (1465)
T ss_pred hhhHHHHhhhhHhHHhhc-------------CCCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeecc
Confidence 358899999999975310 1224677777777889999999999986521 1134444455
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCC-CeeE--EEEEecCC-c-eeeecCCCCCCCCCcEEEE
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHND-DEQY--IWESSAGG-S-FTIKPDHGEQLGRGTKMVL 191 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~-~~~~--~w~~~~~~-~-~~i~~~~~~~~~~GT~I~l 191 (388)
|+ | .+..-...-|.-|+|...|=.++..++|+++... ...| .|..+.+. . -.+.. ......||+|+.
T Consensus 146 gk--F----dd~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~--~~~~~~GT~VtF 217 (1465)
T PLN03237 146 SN--Y----DDNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK--CKKSENWTKVTF 217 (1465)
T ss_pred cc--C----CCCcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc--CCCCCCceEEEE
Confidence 43 2 1111234679999999999999999999998321 2233 45532221 1 11221 122368999987
Q ss_pred EEeeCcc--ccccHHHHHHHHHH---hcccCC--cceEEeeee
Q psy10019 192 YIKEDQA--EYLEEKKIKEIVKK---HSQFIG--YPIKLLVEK 227 (388)
Q Consensus 192 ~Lk~~~~--e~~~~~~i~~~i~k---ys~~l~--~PI~i~~~~ 227 (388)
.-..... .-++.+.|..+.++ .+-||+ .-|+|++++
T Consensus 218 ~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 218 KPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred EECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 5222111 11355555544344 345664 566666554
No 38
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.44 E-value=0.00047 Score=74.98 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=49.3
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++.+||+||+++... ...+.|++..+.+...|+|.|||.||+.+.+.+.+..-..++
T Consensus 582 ~vl~nLl~NAik~~~~--------------~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~-------- 639 (679)
T TIGR02916 582 RVLGHLVQNALEATPG--------------EGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTT-------- 639 (679)
T ss_pred HHHHHHHHHHHHhCCC--------------CCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCC--------
Confidence 3788999999998641 123566665555556799999999999998544442222221
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
+ -+..|+|++.+-.+.
T Consensus 640 ------~-~~G~GLGL~i~~~iv 655 (679)
T TIGR02916 640 ------K-GAGMGIGVYECRQYV 655 (679)
T ss_pred ------C-CCCcchhHHHHHHHH
Confidence 1 156899999876653
No 39
>PLN03128 DNA topoisomerase 2; Provisional
Probab=97.41 E-value=0.00064 Score=77.46 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=92.8
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL--------VNNLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl--------~~~l~~Ig~S 116 (388)
...+.|+|.||+|-.... + .--.|.|.++.++..|+|.|||.||+-+.- +-.|+++-+|
T Consensus 54 ~ki~dEIldNAvDe~~~~-------g------~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaG 120 (1135)
T PLN03128 54 YKIFDEILVNAADNKQRD-------P------SMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTS 120 (1135)
T ss_pred HHHHHHHHHHHHHHhhhc-------C------CCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccc
Confidence 358899999999975310 1 123677777777789999999999986421 1123444445
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecC-CCeeEEEEEecCC---c-eeeecCCCCCCCCCcEEEE
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHN-DDEQYIWESSAGG---S-FTIKPDHGEQLGRGTKMVL 191 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~-~~~~~~w~~~~~~---~-~~i~~~~~~~~~~GT~I~l 191 (388)
|+ |- +..-...-|.-|+|...+=.++..++|++... ++..|.-+...+- . -.+.. .....+||+|+.
T Consensus 121 gk--Fd----d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~--~~~~~~GT~ItF 192 (1135)
T PLN03128 121 SN--FD----DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITS--CKASENWTKITF 192 (1135)
T ss_pred cc--cC----CccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceecc--CCCCCCceEEEE
Confidence 44 21 11123467999999999999999999999832 2233332222211 1 11211 112358999988
Q ss_pred EEeeCcc--ccccHHH---HHHHHHHhcccCC--cceEEeeee
Q psy10019 192 YIKEDQA--EYLEEKK---IKEIVKKHSQFIG--YPIKLLVEK 227 (388)
Q Consensus 192 ~Lk~~~~--e~~~~~~---i~~~i~kys~~l~--~PI~i~~~~ 227 (388)
.-..... .-++.+. +..-++..+.||. .-|++++++
T Consensus 193 ~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder 235 (1135)
T PLN03128 193 KPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGKK 235 (1135)
T ss_pred EECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 6322211 0133343 3333333455663 556665554
No 40
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.40 E-value=0.00068 Score=68.48 Aligned_cols=77 Identities=12% Similarity=0.208 Sum_probs=49.0
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKE-SRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~ 124 (388)
.+|..||.||+.++.. +..+.|.+....+ ...|.|.|||.||+.+++.+.|....+. +
T Consensus 275 qvl~NLl~NAik~~~~--------------~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~-~------ 333 (380)
T PRK09303 275 QVLLNLLDNAIKYTPE--------------GGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRL-P------ 333 (380)
T ss_pred HHHHHHHHHHHhcCCC--------------CceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeC-C------
Confidence 4788899999887541 1234444433333 3569999999999999987655332211 0
Q ss_pred HhcCCCCccccccchhhhhhhhcc
Q psy10019 125 LQAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
.....+..|+|++-|..++
T Consensus 334 -----~~~~~~G~GLGL~i~~~iv 352 (380)
T PRK09303 334 -----RDEGTEGYGIGLSVCRRIV 352 (380)
T ss_pred -----CCCCCCcccccHHHHHHHH
Confidence 0123467999998876664
No 41
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.36 E-value=0.00099 Score=67.69 Aligned_cols=78 Identities=21% Similarity=0.162 Sum_probs=50.1
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
..+.+||.||+.+.. ....+.|.+..+.+...|+|.|||.||+.+++...+.. ..+...
T Consensus 371 ~vl~nli~Na~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~-~~~~~~------ 429 (475)
T PRK11100 371 QALGNLLDNAIDFSP--------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFER-FYSLPR------ 429 (475)
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHH-HccCCC------
Confidence 467888888887742 11235666655555567999999999999998655533 222110
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
. ...-+..|+|++.|-.++
T Consensus 430 ---~-~~~~~~~GlGL~i~~~~~ 448 (475)
T PRK11100 430 ---P-ANGRKSTGLGLAFVREVA 448 (475)
T ss_pred ---C-CCCCCCcchhHHHHHHHH
Confidence 0 122356799999876654
No 42
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.35 E-value=0.00089 Score=70.02 Aligned_cols=74 Identities=24% Similarity=0.357 Sum_probs=51.8
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
+.|.-||.||+||..+ . .....+.+.+..+.+...|.|.|||+||+++.....| ..|.|++.
T Consensus 430 tIlGNLidNA~eA~~~------~-----~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iF-e~G~Stk~------ 491 (537)
T COG3290 430 TILGNLIDNALEALLA------P-----EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIF-EKGVSTKN------ 491 (537)
T ss_pred HHHHHHHHHHHHHhhc------c-----CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHH-hcCccccC------
Confidence 5788899999999873 0 1123345555444444568999999999999886444 56777431
Q ss_pred hcCCCCccccccchhhhhhh
Q psy10019 126 QAGADISMIGQFGVGFYSAY 145 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F 145 (388)
.+.-|+|+|=+-
T Consensus 492 --------~~~rGiGL~Lvk 503 (537)
T COG3290 492 --------TGGRGIGLYLVK 503 (537)
T ss_pred --------CCCCchhHHHHH
Confidence 488899998543
No 43
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.34 E-value=0.00098 Score=67.65 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=50.0
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|..|+.||++++.... + ....+.|.+....+...|+|.|||.||+.+...+.|....++ +
T Consensus 390 ~vl~Nl~~NAik~~~~~~------~----~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~-~------- 451 (494)
T TIGR02938 390 SLFKALVDNAIEAMNIKG------W----KRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTT-K------- 451 (494)
T ss_pred HHHHHHHHHHHHHhhccC------C----CcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCccc-C-------
Confidence 489999999999976311 0 011234443334444679999999999999887655433211 1
Q ss_pred hcCCCCccccccchhhhhhhhc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLV 147 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v 147 (388)
. ...+.-|+|++.+-.+
T Consensus 452 ---~--~~~~G~GlGL~i~~~i 468 (494)
T TIGR02938 452 ---G--GSRKHIGMGLSVAQEI 468 (494)
T ss_pred ---C--CCCCCCcccHHHHHHH
Confidence 0 1145678999887655
No 44
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=97.33 E-value=0.00081 Score=77.65 Aligned_cols=129 Identities=17% Similarity=0.253 Sum_probs=80.7
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL--------VNNLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl--------~~~l~~Ig~S 116 (388)
...+.|+|.||+|-..+- + ..++--.|.|.++.+...|+|.|||.||+-+.- +-.|+++-+|
T Consensus 59 ~ki~dEIldNAvDe~~r~-------~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aG 128 (1388)
T PTZ00108 59 YKIFDEILVNAADNKARD-------K---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTS 128 (1388)
T ss_pred hhhHHHHhhhhhhhhccc-------C---CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecc
Confidence 458899999999975410 0 011224777778777789999999999986421 1134445455
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCC-CeeE--EEEEecC--CceeeecCCCCCC-CCCcEEE
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHND-DEQY--IWESSAG--GSFTIKPDHGEQL-GRGTKMV 190 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~-~~~~--~w~~~~~--~~~~i~~~~~~~~-~~GT~I~ 190 (388)
++ | .+..-...-|.-|+|...+=.++..++|+++... ...| .|..... ..-.+.. ... ..||+|+
T Consensus 129 gk--f----dd~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~---~~~~~~GT~Vt 199 (1388)
T PTZ00108 129 SN--Y----DDTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITS---YDGKKDYTKVT 199 (1388)
T ss_pred cc--C----CCCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCC---CCCCCCceEEE
Confidence 54 2 1111234679999999999999999999999762 2223 4443210 1112221 112 6899998
Q ss_pred EE
Q psy10019 191 LY 192 (388)
Q Consensus 191 l~ 192 (388)
..
T Consensus 200 F~ 201 (1388)
T PTZ00108 200 FY 201 (1388)
T ss_pred EE
Confidence 75
No 45
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.31 E-value=0.00095 Score=64.04 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=49.1
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHh
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ 126 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~ 126 (388)
++.+||.||++++.. ...+.|.+....+...|.|.|||.||+.+.+...|........
T Consensus 233 vl~nll~Nai~~~~~--------------~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~-------- 290 (333)
T TIGR02966 233 AFSNLVSNAIKYTPE--------------GGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDK-------- 290 (333)
T ss_pred HHHHHHHHhheeCCC--------------CCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecCc--------
Confidence 789999999887531 1234555554444567999999999999998655533221110
Q ss_pred cCCCCccccccchhhhhhhhcc
Q psy10019 127 AGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 127 ~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
......+..|+|++.|-.++
T Consensus 291 --~~~~~~~g~glGL~~~~~~~ 310 (333)
T TIGR02966 291 --SRSRDTGGTGLGLAIVKHVL 310 (333)
T ss_pred --ccccCCCCCcccHHHHHHHH
Confidence 00122355799998765553
No 46
>PRK10364 sensor protein ZraS; Provisional
Probab=97.29 E-value=0.0014 Score=67.42 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=49.3
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
..+..||.||++|+.. ...+.|.+..+.+...|.|.|||.||+.+.+.+.|.. +.+.+
T Consensus 351 ~il~NLl~NA~k~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-~~~~k------- 408 (457)
T PRK10364 351 QVLLNLYLNAIQAIGQ--------------HGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTP-YFTTK------- 408 (457)
T ss_pred HHHHHHHHHHHHhcCC--------------CCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCc-cccCC-------
Confidence 3678899999998642 1235666655555578999999999999998765532 22211
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
-+..|+|++-+-.++
T Consensus 409 --------~~g~GlGL~iv~~~v 423 (457)
T PRK10364 409 --------AEGTGLGLAVVHNIV 423 (457)
T ss_pred --------CCCCcccHHHHHHHH
Confidence 134699998765553
No 47
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=97.29 E-value=0.0025 Score=71.14 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=60.2
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHh
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ 126 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~ 126 (388)
++..||.||+.+... ..+.|.+..+.....|.|.|||+||+.+++.+.|....+.
T Consensus 565 il~NLl~NAik~~~~---------------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~---------- 619 (914)
T PRK11466 565 VITNLLSNALRFTDE---------------GSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV---------- 619 (914)
T ss_pred HHHHHHHHHHHhCCC---------------CeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcC----------
Confidence 678888998887531 2355665555555679999999999999997665432111
Q ss_pred cCCCCccccccchhhhhhhhc----cCeEEEEeecCCCeeEEEE
Q psy10019 127 AGADISMIGQFGVGFYSAYLV----ADKVTVHSKHNDDEQYIWE 166 (388)
Q Consensus 127 ~~~~~~~IG~FGIGf~S~F~v----~d~v~V~Sk~~~~~~~~w~ 166 (388)
....|..|+|+.-|-.+ +-++.|.|....+..+.+.
T Consensus 620 ----~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~ 659 (914)
T PRK11466 620 ----SGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLR 659 (914)
T ss_pred ----CCCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEE
Confidence 01236789999875444 4678888876544444443
No 48
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.26 E-value=0.001 Score=74.04 Aligned_cols=91 Identities=13% Similarity=0.226 Sum_probs=59.4
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|..||+||+.++.. ..+.|++....+...|+|.|||+||+.+++.+.|....+.
T Consensus 516 ~il~NLl~NAik~~~~---------------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 571 (921)
T PRK15347 516 QILVNLLGNAVKFTET---------------GGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQA--------- 571 (921)
T ss_pred HHHHHHHHHHhhcCCC---------------CCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccC---------
Confidence 3678888999887531 2356666555555679999999999999987655322111
Q ss_pred hcCCCCccccccchhhhhhh----hccCeEEEEeecCCCeeEEE
Q psy10019 126 QAGADISMIGQFGVGFYSAY----LVADKVTVHSKHNDDEQYIW 165 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F----~v~d~v~V~Sk~~~~~~~~w 165 (388)
. ...|..|+|+.-|- ..+-++.|.|....+..+.+
T Consensus 572 ---~--~~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i 610 (921)
T PRK15347 572 ---D--THSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSL 610 (921)
T ss_pred ---C--CCCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEE
Confidence 0 12367899997654 34567888887654444433
No 49
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.23 E-value=0.0012 Score=66.74 Aligned_cols=80 Identities=11% Similarity=0.173 Sum_probs=51.5
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++.+||.||+++... +..+.|.+..+.+...|+|.|||.||+.+.+.+.|...-++...
T Consensus 356 ~~~~nll~Nai~~~~~--------------~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~------ 415 (457)
T TIGR01386 356 RAISNLLSNALRHTPD--------------GGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPA------ 415 (457)
T ss_pred HHHHHHHHHHHHcCCC--------------CceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcc------
Confidence 3677888888776421 12356666555555679999999999999987766544333211
Q ss_pred hcCCCCccccccchhhhhhhhccC
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVAD 149 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d 149 (388)
.....+..|+|++-+--+++
T Consensus 416 ----~~~~~~g~GlGL~i~~~~~~ 435 (457)
T TIGR01386 416 ----RSNSGEGTGLGLAIVRSIME 435 (457)
T ss_pred ----cCCCCCCccccHHHHHHHHH
Confidence 01234568999988765543
No 50
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=97.23 E-value=0.00056 Score=75.51 Aligned_cols=165 Identities=20% Similarity=0.211 Sum_probs=93.4
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------LVNNLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l~~~l~~Ig~S 116 (388)
...|.|+|.||+|-... . .--.|.|.++. +..|+|.|||.||+-+. ++-.|.++-.+
T Consensus 131 hhLv~EIlDNSVDE~la-G-------------~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAG 195 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA-G-------------ECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSG 195 (903)
T ss_pred eEEEEEEeeccchhhcc-C-------------CCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccC
Confidence 34889999999995331 1 12366666654 47899999999998743 21122222223
Q ss_pred CchhHHHH---------------------------------Hhc-C-CC-CccccccchhhhhhhhccCeEEEEeecCCC
Q psy10019 117 GTKAFMEA---------------------------------LQA-G-AD-ISMIGQFGVGFYSAYLVADKVTVHSKHNDD 160 (388)
Q Consensus 117 ~k~~f~~~---------------------------------~~~-~-~~-~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~ 160 (388)
|+ |-.. ... . .. ....|.-|+|...+=.++..++|+++..+.
T Consensus 196 GK--F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdGK 273 (903)
T PTZ00109 196 GK--FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGGK 273 (903)
T ss_pred cc--ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECCE
Confidence 22 2110 000 0 00 235789999999999999999999987653
Q ss_pred eeEEEEEecCC-ceeeecCCCCCCCCCcEEEEEEe-eCccc--c--------------ccHHHHHHHHHHhcccC-Ccce
Q psy10019 161 EQYIWESSAGG-SFTIKPDHGEQLGRGTKMVLYIK-EDQAE--Y--------------LEEKKIKEIVKKHSQFI-GYPI 221 (388)
Q Consensus 161 ~~~~w~~~~~~-~~~i~~~~~~~~~~GT~I~l~Lk-~~~~e--~--------------~~~~~i~~~i~kys~~l-~~PI 221 (388)
.|.-+...+. .-.+.........+||+|+..-. ..-.. . ++...|+.-++.++=.. ..-|
T Consensus 274 -~y~q~F~rG~~v~pLkvig~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~I 352 (903)
T PTZ00109 274 -IYSIELSKGKVTKPLSVFSCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPGLTF 352 (903)
T ss_pred -EEEEEeCCCcccCCccccCCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHhccCCCcEE
Confidence 3333333221 11111111122468999987644 32110 0 24567777777776332 3566
Q ss_pred EEeeee
Q psy10019 222 KLLVEK 227 (388)
Q Consensus 222 ~i~~~~ 227 (388)
+++.++
T Consensus 353 ~L~DeR 358 (903)
T PTZ00109 353 YLVDER 358 (903)
T ss_pred EEEecC
Confidence 666554
No 51
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=97.22 E-value=0.0011 Score=71.41 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=89.4
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHH-----------HHHHhh
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVN-----------NLGTIA 114 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~-----------~l~~Ig 114 (388)
..+.|+|.||+|-... ++. +.-..|.|.++ +..|+|.|||.||+-+.-.. .|+++-
T Consensus 48 hi~~EIldNavDe~~~-------~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~Lh 114 (602)
T PHA02569 48 KIIDEIIDNSVDEAIR-------TNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTK 114 (602)
T ss_pred eeeehhhhhhhhhhhc-------cCC----CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeec
Confidence 4778999999996431 110 12246777776 67899999999998753311 133333
Q ss_pred ccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCC-ceeeecCCCCCCCCCcEEEEEE
Q psy10019 115 KSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGG-SFTIKPDHGEQLGRGTKMVLYI 193 (388)
Q Consensus 115 ~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~-~~~i~~~~~~~~~~GT~I~l~L 193 (388)
++++ |- ..-...-|.-|+|...+=.++..++|+++.. ...|......+- ...+. . +....+||+|+..-
T Consensus 115 aGgk--Fd-----~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~-~~~~~q~f~~G~~~~~~~-~-~~~~~~GT~V~F~P 184 (602)
T PHA02569 115 AGSN--FD-----DTNRVTGGMNGVGSSLTNFFSVLFIGETCDG-KNEVTVNCSNGAENISWS-T-KPGKGKGTSVTFIP 184 (602)
T ss_pred cccc--cC-----CcceeeCCcCCccceeeeccchhhheEEEcC-CEEEEEEecCCcccCCcc-c-CCCCCCccEEEEEE
Confidence 4443 31 1112457999999999999999999988643 333333322221 11111 1 23346899998864
Q ss_pred eeCcccc--cc---HHHHHHHHHHhcccC--CcceEEeeee
Q psy10019 194 KEDQAEY--LE---EKKIKEIVKKHSQFI--GYPIKLLVEK 227 (388)
Q Consensus 194 k~~~~e~--~~---~~~i~~~i~kys~~l--~~PI~i~~~~ 227 (388)
....... ++ ...|.+-++..+ || +.-|+++.++
T Consensus 185 D~~iF~~~~~~~~~~~~l~~Rl~elA-~Ln~Gl~I~l~der 224 (602)
T PHA02569 185 DFSHFEVNGLDQQYLDIILDRLQTLA-VVFPDIKFTFNGKK 224 (602)
T ss_pred CHHHhCCCccCccHHHHHHHHHHHHh-cCCCCCEEEEEecC
Confidence 3322110 12 344555555554 33 3556666544
No 52
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.20 E-value=0.0018 Score=67.27 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=50.1
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++.+|+.||++|+... ....+.|.+..+.+...|.|.|||.||+.+++.+.|.. +.+++
T Consensus 436 ~vl~nLl~NAi~~~~~~------------~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~-~~~~~------- 495 (542)
T PRK11086 436 TILGNLIENALEAVGGE------------EGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDK-GYSTK------- 495 (542)
T ss_pred HHHHHHHHHHHHHhhcC------------CCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhC-CCccC-------
Confidence 46889999999996420 11235555555544567999999999999998766532 22211
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
-+..|+|+..+-.+.
T Consensus 496 --------~~g~GlGL~iv~~iv 510 (542)
T PRK11086 496 --------GSNRGVGLYLVKQSV 510 (542)
T ss_pred --------CCCCcCcHHHHHHHH
Confidence 134699998876653
No 53
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.19 E-value=0.0057 Score=68.86 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=60.5
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCC---CCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKE---SRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFM 122 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~ 122 (388)
.++.-||.||+.+... ..+.|.+..... ...|.|.|||+||+.+++.+.|....+. +
T Consensus 568 QVL~NLL~NAik~t~~---------------G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~-~---- 627 (894)
T PRK10618 568 KILLLLLNYAITTTAY---------------GKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQ-T---- 627 (894)
T ss_pred HHHHHHHHHHHHhCCC---------------CeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccC-C----
Confidence 3788899999988541 234555544322 2468999999999999997655433221 1
Q ss_pred HHHhcCCCCccccccchhhhhhhh----ccCeEEEEeecCCCeeEEEEE
Q psy10019 123 EALQAGADISMIGQFGVGFYSAYL----VADKVTVHSKHNDDEQYIWES 167 (388)
Q Consensus 123 ~~~~~~~~~~~IG~FGIGf~S~F~----v~d~v~V~Sk~~~~~~~~w~~ 167 (388)
......+..|+|+.-|-. .+-++.|.|....+..|.+..
T Consensus 628 ------~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~L 670 (894)
T PRK10618 628 ------QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHL 670 (894)
T ss_pred ------CCCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEE
Confidence 011223467999876543 356889998876555555543
No 54
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=97.17 E-value=0.002 Score=72.31 Aligned_cols=94 Identities=14% Similarity=0.258 Sum_probs=63.2
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKES-RTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~ 124 (388)
.+|..||.||+.+... ..+.|.+....+. ..|.|.|||+||+.+++.+.|....+..
T Consensus 582 ~il~nLi~NAik~~~~---------------g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~------- 639 (968)
T TIGR02956 582 QVLINLVGNAIKFTDR---------------GSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQAD------- 639 (968)
T ss_pred HHHHHHHHHHHhhCCC---------------CeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccC-------
Confidence 3788999999988531 2356666666555 6799999999999999977664432221
Q ss_pred HhcCCCCccccccchhhhhhhhc----cCeEEEEeecCCCeeEEEE
Q psy10019 125 LQAGADISMIGQFGVGFYSAYLV----ADKVTVHSKHNDDEQYIWE 166 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S~F~v----~d~v~V~Sk~~~~~~~~w~ 166 (388)
.....|..|+|++-|-.+ +-++.|.|....+..+.+.
T Consensus 640 -----~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~ 680 (968)
T TIGR02956 640 -----GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFT 680 (968)
T ss_pred -----CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEE
Confidence 123347789999866444 4578888775544444443
No 55
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.14 E-value=0.0016 Score=68.20 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=48.1
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHh
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ 126 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~ 126 (388)
++.-||.||+.++.. .+.|.+..+.+...|+|.|||.||+.+++...|...-+.
T Consensus 382 vl~NLi~NAik~~~~----------------~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~---------- 435 (485)
T PRK10815 382 VMGNVLDNACKYCLE----------------FVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRA---------- 435 (485)
T ss_pred HHHHHHHHHHHhcCC----------------cEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccC----------
Confidence 778888888887631 245665555445679999999999999987655321110
Q ss_pred cCCCCccccccchhhhhhhhccC
Q psy10019 127 AGADISMIGQFGVGFYSAYLVAD 149 (388)
Q Consensus 127 ~~~~~~~IG~FGIGf~S~F~v~d 149 (388)
+ ...+..|+|++-|-.+++
T Consensus 436 ---~-~~~~G~GLGL~Ivk~iv~ 454 (485)
T PRK10815 436 ---D-TLRPGQGLGLSVAREITE 454 (485)
T ss_pred ---C-CCCCCcchhHHHHHHHHH
Confidence 0 112457999988766643
No 56
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=97.14 E-value=0.0021 Score=67.34 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=50.6
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHh
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ 126 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~ 126 (388)
.+.+||.||++|+.+.. .....+.|.+..+.+...|.|.|||.||+.+++.+.|.. +.+++.
T Consensus 436 vl~nLl~NAi~~~~~~~----------~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk~------- 497 (545)
T PRK15053 436 IVGNLLDNAFEASLRSD----------EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTRA------- 497 (545)
T ss_pred HHHHHHHHHHHHHhhCC----------CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCCC-------
Confidence 68899999999975210 011234454444444466999999999999998765543 223211
Q ss_pred cCCCCccccccchhhhhhhhcc
Q psy10019 127 AGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 127 ~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
..-|..|+|++.+..+.
T Consensus 498 -----~~~~g~GlGL~ivk~iv 514 (545)
T PRK15053 498 -----DEPGEHGIGLYLIASYV 514 (545)
T ss_pred -----CCCCCceeCHHHHHHHH
Confidence 12245699999877664
No 57
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.13 E-value=0.0063 Score=67.78 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=58.6
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc---------------CCCCEEEEEeCCCCCCHHHHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD---------------KESRTLTIIDSGIGMTKADLVNNL 110 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d---------------~~~~~l~V~DNG~GMs~edl~~~l 110 (388)
.++..||.||+.++.. ...+.|.+... .+...|.|.|||.||+.+++.+.|
T Consensus 563 qvl~NLl~NAik~~~~--------------~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iF 628 (828)
T PRK13837 563 QVLMNLCSNAAQAMDG--------------AGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIF 628 (828)
T ss_pred HHHHHHHHHHHHHccc--------------CCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhh
Confidence 3788999999998641 12345555443 222468999999999999987555
Q ss_pred HHhhccCchhHHHHHhcCCCCccccccchhhhhhhhc----cCeEEEEeecCCCeeEEEE
Q psy10019 111 GTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----ADKVTVHSKHNDDEQYIWE 166 (388)
Q Consensus 111 ~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v----~d~v~V~Sk~~~~~~~~w~ 166 (388)
... .++ .. +..|+|++.|-.+ +-++.|.|...++..|.+.
T Consensus 629 e~F-~~~--------------~~-~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~ 672 (828)
T PRK13837 629 EPF-FTT--------------RA-GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVY 672 (828)
T ss_pred CCc-ccC--------------CC-CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEE
Confidence 322 110 11 6789999876444 5678888875544444443
No 58
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.11 E-value=0.0021 Score=65.19 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=46.6
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHh
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ 126 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~ 126 (388)
++..||.||+.++. ..+.|.+..+.+...|+|.|||.||+.+++.+.|....+..
T Consensus 335 il~NLl~NA~k~~~----------------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~--------- 389 (435)
T PRK09467 335 ALANLVVNAARYGN----------------GWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGD--------- 389 (435)
T ss_pred HHHHHHHHHHHhCC----------------CeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccCC---------
Confidence 56667777765532 23556655554446799999999999999876554321110
Q ss_pred cCCCCccccccchhhhhhhhccC
Q psy10019 127 AGADISMIGQFGVGFYSAYLVAD 149 (388)
Q Consensus 127 ~~~~~~~IG~FGIGf~S~F~v~d 149 (388)
.. ...+.+|+|++-|-.+++
T Consensus 390 --~~-~~~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 390 --SA-RGSSGTGLGLAIVKRIVD 409 (435)
T ss_pred --CC-CCCCCeehhHHHHHHHHH
Confidence 01 112678999987655543
No 59
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=97.09 E-value=0.0034 Score=53.89 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=47.8
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.||+.||+.+.- .. .....+.|.+....+...|.|.|+|.||+. +...+... .+.
T Consensus 42 ~~l~eli~Nai~h~~----~~-------~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~--~~~~~~~~-~~~-------- 99 (137)
T TIGR01925 42 TAVSEAVTNAIIHGY----EE-------NCEGVVYISATIEDHEVYITVRDEGIGIEN--LEEAREPL-YTS-------- 99 (137)
T ss_pred HHHHHHHHHHHHhcc----CC-------CCCcEEEEEEEEeCCEEEEEEEEcCCCcCc--hhHhhCCC-ccc--------
Confidence 578999999986521 10 012235566655555567999999999983 32222211 110
Q ss_pred hcCCCCccccccchhhhhhhhccCeEEEEee
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVADKVTVHSK 156 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk 156 (388)
. ...+.-|+|++-+-.+.+.+.+.+.
T Consensus 100 ---~--~~~~~~GlGL~lv~~~~~~l~~~~~ 125 (137)
T TIGR01925 100 ---K--PELERSGMGFTVMENFMDDVSVDSE 125 (137)
T ss_pred ---C--CCCCCCcccHHHHHHhCCcEEEEEC
Confidence 0 1124568888766555555555544
No 60
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.02 E-value=0.0036 Score=68.84 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=63.3
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD-KESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~ 124 (388)
.++..||.||+++... ..+.|.+... .+...|.|.|||+||+.+++.+.|....+...
T Consensus 401 qvl~NLl~NAik~~~~---------------g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~------ 459 (779)
T PRK11091 401 QILWNLISNAVKFTQQ---------------GGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKD------ 459 (779)
T ss_pred HHHHHHHHHHHHhCCC---------------CcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccC------
Confidence 4788999999988531 2356666655 33357999999999999999776654332210
Q ss_pred HhcCCCCccccccchhhhhhhhc----cCeEEEEeecCCCeeEEEE
Q psy10019 125 LQAGADISMIGQFGVGFYSAYLV----ADKVTVHSKHNDDEQYIWE 166 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S~F~v----~d~v~V~Sk~~~~~~~~w~ 166 (388)
.......|.-|+|+..|-.+ +-++.|.|....+..|.+.
T Consensus 460 ---~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~ 502 (779)
T PRK11091 460 ---SHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLT 502 (779)
T ss_pred ---CCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEE
Confidence 11123356789999876544 5678898876554445443
No 61
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.99 E-value=0.0036 Score=65.05 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=35.5
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKES-RTLTIIDSGIGMTKADLVNNL 110 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~V~DNG~GMs~edl~~~l 110 (388)
++.+||.||+.+... ...+.|.+....+. ..|.|.|||+||+.+.+...|
T Consensus 504 ~~~nli~na~~~~~~--------------~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 504 VLLNILINAVQAISA--------------RGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred HHHHHHHHHHHHhcC--------------CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhc
Confidence 677888888877531 12355655555455 779999999999999886544
No 62
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=96.97 E-value=0.0026 Score=67.14 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=43.5
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhcc
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKS 116 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S 116 (388)
+|--|||||+||.+.. ..+.++|....+.+...|+|.|||.|+..+-+...|..+.++
T Consensus 501 VLvNLl~NALDA~~~~------------~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~Tt 558 (603)
T COG4191 501 VLVNLLQNALDAMAGQ------------EDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTT 558 (603)
T ss_pred HHHHHHHHHHHHhcCC------------CCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCcccc
Confidence 6777999999998731 123456666666666789999999999999998777655444
No 63
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=96.97 E-value=0.01 Score=67.14 Aligned_cols=142 Identities=15% Similarity=0.244 Sum_probs=79.6
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.-||.||+.+... ..+.|.+..+.+...|.|.|||+||+.+++.+.|....+...
T Consensus 565 qvl~NLl~NAik~t~~---------------G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~------- 622 (924)
T PRK10841 565 QVISNLLSNAIKFTDT---------------GCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT------- 622 (924)
T ss_pred HHHHHHHHHHHhhCCC---------------CcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCC-------
Confidence 4788899999888531 235565555444467899999999999998766543322111
Q ss_pred hcCCCCccccccchhhhhhhhc----cCeEEEEeecCCCeeEEEEEecC-CceeeecCCCCCCCCCcEEEEEEeeCcccc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLV----ADKVTVHSKHNDDEQYIWESSAG-GSFTIKPDHGEQLGRGTKMVLYIKEDQAEY 200 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v----~d~v~V~Sk~~~~~~~~w~~~~~-~~~~i~~~~~~~~~~GT~I~l~Lk~~~~e~ 200 (388)
......+..|+|+.-|-.+ +-++.|.|....+..+.+..... ....... ......|.++.+.....
T Consensus 623 ---~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~~~--~~~~~~g~~i~l~~~~~---- 693 (924)
T PRK10841 623 ---GVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQKK--GVEGLQGKRCWLAVRNA---- 693 (924)
T ss_pred ---CCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccccc--cCcccCCCEEEEEcCCH----
Confidence 0112335689999876544 45788888755444444433211 1111111 12344677776665432
Q ss_pred ccHHHHHHHHHHhcccCCcceE
Q psy10019 201 LEEKKIKEIVKKHSQFIGYPIK 222 (388)
Q Consensus 201 ~~~~~i~~~i~kys~~l~~PI~ 222 (388)
.+..++..+....++-+.
T Consensus 694 ----~~~~~l~~~l~~~G~~v~ 711 (924)
T PRK10841 694 ----SLEQFLETLLQRSGIQVQ 711 (924)
T ss_pred ----HHHHHHHHHHHHCCCeEE
Confidence 234444444444444443
No 64
>PRK03660 anti-sigma F factor; Provisional
Probab=96.93 E-value=0.007 Score=52.40 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=47.3
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++.||+.||+.... .. .....+.|.+....+...|+|.|+|.||+. +...+...- +.
T Consensus 42 ~~l~eli~Nai~h~~----~~-------~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~-~~-------- 99 (146)
T PRK03660 42 TAVSEAVTNAIIHGY----EN-------NPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLY-TT-------- 99 (146)
T ss_pred HHHHHHHHHHHHHhc----CC-------CCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCc-cc--------
Confidence 588999999986532 10 001235666655555567999999999985 322221111 10
Q ss_pred hcCCCCccccccchhhhhhhhccCeEEEEe
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVADKVTVHS 155 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d~v~V~S 155 (388)
. ..-+.-|+|++-+..+++.+.+.+
T Consensus 100 ---~--~~~~~~GlGL~i~~~~~~~i~~~~ 124 (146)
T PRK03660 100 ---K--PELERSGMGFTVMESFMDEVEVES 124 (146)
T ss_pred ---C--CCCCCccccHHHHHHhCCeEEEEe
Confidence 0 011346889877666666554443
No 65
>PRK10490 sensor protein KdpD; Provisional
Probab=96.92 E-value=0.0034 Score=70.71 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=49.4
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++..||.||+.++.. +..+.|.+..+.+...|.|.|||.||+.+++.+.|.... +++
T Consensus 781 qVL~NLL~NAik~s~~--------------g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~-~~~------- 838 (895)
T PRK10490 781 RVLINLLENAVKYAGA--------------QAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFA-RGN------- 838 (895)
T ss_pred HHHHHHHHHHHHhCCC--------------CCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCc-cCC-------
Confidence 4788899999888531 123555555554556799999999999999866554321 111
Q ss_pred hcCCCCccccccchhhhhhhhc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLV 147 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v 147 (388)
.....+..|+|++-|-.+
T Consensus 839 ----~~~~~~G~GLGL~Ivk~i 856 (895)
T PRK10490 839 ----KESAIPGVGLGLAICRAI 856 (895)
T ss_pred ----CCCCCCCccHHHHHHHHH
Confidence 112234689999876554
No 66
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=96.88 E-value=0.0031 Score=56.34 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=54.5
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++.|++.||+..+.... ....+.|.+....+...|.|.|+|.||+...+...+. .....
T Consensus 45 lav~Ea~~Nai~Hg~~~~-----------~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~---p~~~~------ 104 (161)
T PRK04069 45 IAVSEACTNAVQHAYKED-----------EVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLG---PYDIS------ 104 (161)
T ss_pred HHHHHHHHHHHHhccCCC-----------CCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccC---CCCCC------
Confidence 599999999999874210 1134566666666667899999999999776643321 10000
Q ss_pred hcCCCCccccccchhhhhhhhccCeEEEEe
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVADKVTVHS 155 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d~v~V~S 155 (388)
........-|+|++-+-.++|++.+.+
T Consensus 105 ---~~~~~~~~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 105 ---KPIEDLREGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred ---CcccccCCCceeHHHHHHHHHhEEEEc
Confidence 000111123778777777788888775
No 67
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.84 E-value=0.0051 Score=57.89 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=36.9
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNL 110 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l 110 (388)
.++..||.||++|+. .+.+.|.+....+...|.|.|||.||+.+.+...|
T Consensus 231 ~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if 280 (336)
T COG0642 231 QVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELERIF 280 (336)
T ss_pred HHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhc
Confidence 489999999999973 12345555544334679999999999999975444
No 68
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=96.81 E-value=0.0052 Score=68.39 Aligned_cols=96 Identities=15% Similarity=0.293 Sum_probs=59.6
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc--CCC---CEEEEEeCCCCCCHHHHHHHHHHhhccCchh
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD--KES---RTLTIIDSGIGMTKADLVNNLGTIAKSGTKA 120 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d--~~~---~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~ 120 (388)
.+|..||.||+.++.. ..+.|.+... ..+ ..|.|.|||+||+.+++.+.|....+...
T Consensus 411 ~vl~NLl~NAik~~~~---------------g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-- 473 (919)
T PRK11107 411 QIITNLVGNAIKFTES---------------GNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADA-- 473 (919)
T ss_pred HHHHHHHHHHhhcCCC---------------CcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCC--
Confidence 3688999999888531 2244444432 221 35899999999999999766644322211
Q ss_pred HHHHHhcCCCCccccccchhhhhhhhc----cCeEEEEeecCCCeeEEEE
Q psy10019 121 FMEALQAGADISMIGQFGVGFYSAYLV----ADKVTVHSKHNDDEQYIWE 166 (388)
Q Consensus 121 f~~~~~~~~~~~~IG~FGIGf~S~F~v----~d~v~V~Sk~~~~~~~~w~ 166 (388)
......|..|+|++-|-.+ +-++.|.|....+..+.+.
T Consensus 474 --------~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~ 515 (919)
T PRK11107 474 --------SISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFH 515 (919)
T ss_pred --------CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEE
Confidence 0112347889999865443 4678888876554444443
No 69
>PRK09835 sensor kinase CusS; Provisional
Probab=96.77 E-value=0.0075 Score=61.78 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=48.4
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++..||.||+.++.. ...+.|.+..+.+...|.|.|||.||+.+++...|....++..
T Consensus 378 ~vl~nll~Na~~~~~~--------------~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~------- 436 (482)
T PRK09835 378 RAISNLLSNALRYTPA--------------GEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDP------- 436 (482)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-------
Confidence 4677888887777531 1235566555555567999999999999999765543222211
Q ss_pred hcCCCCccccccchhhhhhhhc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLV 147 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v 147 (388)
......+..|+|++-|-.+
T Consensus 437 ---~~~~~~~g~GlGL~i~~~i 455 (482)
T PRK09835 437 ---SRQRKGEGSGIGLAIVKSI 455 (482)
T ss_pred ---CCCCCCCCcchHHHHHHHH
Confidence 0112235689999765443
No 70
>PRK10337 sensor protein QseC; Provisional
Probab=96.77 E-value=0.006 Score=62.16 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=45.5
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHh
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ 126 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~ 126 (388)
+++.||.||+.++.. . ..|.|... ...|+|.|||.||+.+++...|..+-+.
T Consensus 356 vl~Nli~NA~k~~~~--------------~--~~i~i~~~--~~~i~i~D~G~Gi~~~~~~~if~~f~~~---------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSPQ--------------G--SVVDVTLN--ARNFTVRDNGPGVTPEALARIGERFYRP---------- 407 (449)
T ss_pred HHHHHHHHHHhhCCC--------------C--CeEEEEEE--eeEEEEEECCCCCCHHHHHHhcccccCC----------
Confidence 678888888877531 1 23444332 2379999999999999997655432221
Q ss_pred cCCCCccccccchhhhhhhhccC
Q psy10019 127 AGADISMIGQFGVGFYSAYLVAD 149 (388)
Q Consensus 127 ~~~~~~~IG~FGIGf~S~F~v~d 149 (388)
+....+..|+|+.-|-.+++
T Consensus 408 ---~~~~~~g~GlGL~iv~~i~~ 427 (449)
T PRK10337 408 ---PGQEATGSGLGLSIVRRIAK 427 (449)
T ss_pred ---CCCCCCccchHHHHHHHHHH
Confidence 11223568999987655543
No 71
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.76 E-value=0.0058 Score=67.02 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=51.3
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++..||.||+.++.. ...+.|.+..+.+...|+|.|||.||+.+++.+.|...-+. +.
T Consensus 600 ~il~NLI~NAik~s~~--------------~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~-~~------ 658 (703)
T TIGR03785 600 QMLDKLVDNAREFSPE--------------DGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSV-RD------ 658 (703)
T ss_pred HHHHHHHHHHHHHCCC--------------CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeec-CC------
Confidence 3678899999888631 12356665555555679999999999999997665433221 10
Q ss_pred hcCCCCccccccchhhhhhhhccC
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVAD 149 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d 149 (388)
......+..|+|++-|-.+++
T Consensus 659 ---~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 659 ---QGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred ---CCCCCCCCccHHHHHHHHHHH
Confidence 011222468999988765543
No 72
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=96.54 E-value=0.013 Score=52.43 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=55.7
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.++.||+.||+...-. . .....+.|.+....+...|.|.|+|.||+...+...+. .....
T Consensus 45 lav~Ea~~Nai~ha~~----~-------~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~~------ 104 (159)
T TIGR01924 45 IAVSEACTNAVKHAYK----E-------GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDGS------ 104 (159)
T ss_pred HHHHHHHHHHHHhccC----C-------CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCCC------
Confidence 5999999999988631 0 11234666666666667789999999999776643221 11000
Q ss_pred hcCCCCccccccchhhhhhhhccCeEEEEe
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVADKVTVHS 155 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d~v~V~S 155 (388)
........-|.|++-+=.++|.+.+.+
T Consensus 105 ---~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 105 ---EPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred ---CCcccCCCCccCHHHHHHhccEEEEEe
Confidence 011111234888888888899998876
No 73
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=96.43 E-value=0.016 Score=48.83 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=54.2
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHH
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~ 124 (388)
..++.|++.||+...... .....+.|.+..+.....|.|.|+|.|++...+.....
T Consensus 33 ~lav~E~~~Nav~H~~~~-----------~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~------------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYPG-----------DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP------------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCCC-----------CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-------------
Confidence 359999999999997521 01134566666677778899999999999876532110
Q ss_pred HhcCCCCccccccchhhhhhhhccCeEEE
Q psy10019 125 LQAGADISMIGQFGVGFYSAYLVADKVTV 153 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S~F~v~d~v~V 153 (388)
........-|.|++-+-.++|++.+
T Consensus 89 ----~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 ----WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred ----ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0012334556677777777799988
No 74
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=96.28 E-value=0.017 Score=56.59 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=32.9
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc------CC----CCEEEEEeCCCCCCHHHHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD------KE----SRTLTIIDSGIGMTKADLVNNL 110 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d------~~----~~~l~V~DNG~GMs~edl~~~l 110 (388)
.++..||.||+.++.. ....+.|.+... .. ...|.|.|||.||+.+.+.+.|
T Consensus 240 ~vl~nLl~NA~~~~~~-------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF 301 (348)
T PRK11073 240 QVLLNIVRNALQALGP-------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLF 301 (348)
T ss_pred HHHHHHHHHHHHHhcc-------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhcc
Confidence 4789999999999731 012233332111 01 1258999999999998875544
No 75
>PRK13557 histidine kinase; Provisional
Probab=95.96 E-value=0.032 Score=57.68 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=40.9
Q ss_pred CEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhh----hccCeEEEEeecCCCeeEEE
Q psy10019 90 RTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY----LVADKVTVHSKHNDDEQYIW 165 (388)
Q Consensus 90 ~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F----~v~d~v~V~Sk~~~~~~~~w 165 (388)
..|+|.|||.||+.+.+...|... .+.+ ...+..|+|++.+- ..+-++.|.|...++..+.+
T Consensus 325 ~~i~v~D~G~Gi~~~~~~~if~~~-~~~~-------------~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i 390 (540)
T PRK13557 325 VSIAVTDTGSGMPPEILARVMDPF-FTTK-------------EEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRL 390 (540)
T ss_pred EEEEEEcCCCCCCHHHHHhccCCC-cccC-------------CCCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEE
Confidence 368999999999999886544322 1111 12357899987543 44678889887654444444
Q ss_pred EE
Q psy10019 166 ES 167 (388)
Q Consensus 166 ~~ 167 (388)
..
T Consensus 391 ~l 392 (540)
T PRK13557 391 YF 392 (540)
T ss_pred Ee
Confidence 43
No 76
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=95.85 E-value=0.032 Score=64.40 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=57.4
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEE---cCCC--CEEEEEeCCCCCCHHHHHHHHHHhhccCchh
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIP---DKES--RTLTIIDSGIGMTKADLVNNLGTIAKSGTKA 120 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~---d~~~--~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~ 120 (388)
.++..||.||++++.. ..+.|.+.. +... ..|.|.|||.||+.+++.+.|....++ +
T Consensus 831 qvl~NLl~NAik~~~~---------------g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-~-- 892 (1197)
T PRK09959 831 QVLSNLLSNALKFTTE---------------GAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQT-S-- 892 (1197)
T ss_pred HHHHHHHHHHHHhCCC---------------CCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccc-c--
Confidence 4788999999999642 123444322 2222 357999999999999987655432221 1
Q ss_pred HHHHHhcCCCCccccccchhhhhhhhc----cCeEEEEeecCCCeeEEE
Q psy10019 121 FMEALQAGADISMIGQFGVGFYSAYLV----ADKVTVHSKHNDDEQYIW 165 (388)
Q Consensus 121 f~~~~~~~~~~~~IG~FGIGf~S~F~v----~d~v~V~Sk~~~~~~~~w 165 (388)
.....+..|+|++-|-.+ +-++.|.|....+..+.+
T Consensus 893 ---------~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i 932 (1197)
T PRK09959 893 ---------AGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTI 932 (1197)
T ss_pred ---------cCCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEE
Confidence 012235689999876444 467888887554444443
No 77
>PRK10547 chemotaxis protein CheA; Provisional
Probab=95.80 E-value=0.088 Score=57.54 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=57.6
Q ss_pred HHHHHhchHhHhhhh--hhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHH---------------
Q psy10019 48 LRELISNSSDALDKI--RYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNL--------------- 110 (388)
Q Consensus 48 lRELIqNA~DA~~~~--r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l--------------- 110 (388)
|..||.||+|++-.- .......+ ....+.|......+...|.|.|||.||+.+.+....
T Consensus 390 L~hLirNAidHgie~p~~R~~~gkp----~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e 465 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAAGKN----SVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEE 465 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhcCCC----CCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHH
Confidence 568999999996320 00000001 112345554444444569999999999998875321
Q ss_pred --HHhhccCchhHHHHHhcCCCCccccccchhhhhh----hhccCeEEEEeecCCCeeEE
Q psy10019 111 --GTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA----YLVADKVTVHSKHNDDEQYI 164 (388)
Q Consensus 111 --~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~----F~v~d~v~V~Sk~~~~~~~~ 164 (388)
..|...+ | ........++..|+|+.-+ -.++-.+.|.|....+..+.
T Consensus 466 ~~~lIF~pg---f----st~~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~ 518 (670)
T PRK10547 466 VGMLIFAPG---F----STAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIR 518 (670)
T ss_pred HHHHhhcCC---c----ccccccccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEE
Confidence 1111111 0 0001112345679998643 34567899999765444443
No 78
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.64 E-value=0.033 Score=55.92 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=36.7
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL 106 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl 106 (388)
.+++|.|.||+..... ..+.|.+....+.-+|+|.|||.|.+.+..
T Consensus 282 rivQEaltN~~rHa~A---------------~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 282 RIVQEALTNAIRHAQA---------------TEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHHhccCC---------------ceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 4899999999888642 346777777777788999999999996644
No 79
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=95.57 E-value=0.038 Score=58.70 Aligned_cols=43 Identities=21% Similarity=0.408 Sum_probs=29.8
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKA 104 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~e 104 (388)
.++|+|.||+.+... ..+.|.+..+.+...|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha~a---------------~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHAQA---------------SEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhCCC---------------CeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 578888887766421 2355666555445679999999999974
No 80
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=95.42 E-value=0.082 Score=58.14 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=58.9
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
-+|--||.||.-..- ....++|.+..+.+.-.|.|.|||-|++.+++.+.|-++.+.++.
T Consensus 778 QVLiNLleNA~Kyap--------------~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~------ 837 (890)
T COG2205 778 QVLINLLENALKYAP--------------PGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNKE------ 837 (890)
T ss_pred HHHHHHHHHHHhhCC--------------CCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC------
Confidence 477789999977642 234577777777777889999999999999999888766555431
Q ss_pred hcCCCCccccccchhhhhhhhc----cCeEEEEee
Q psy10019 126 QAGADISMIGQFGVGFYSAYLV----ADKVTVHSK 156 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v----~d~v~V~Sk 156 (388)
+....-|+|++-|-.+ +.++.+.+.
T Consensus 838 ------~~~~G~GLGLsIc~~iv~ahgG~I~a~~~ 866 (890)
T COG2205 838 ------SATRGVGLGLAICRGIVEAHGGTISAENN 866 (890)
T ss_pred ------CCCCCccccHHHHHHHHHHcCCeEEEEEc
Confidence 1145567777766443 344555553
No 81
>KOG0787|consensus
Probab=94.92 E-value=0.081 Score=53.39 Aligned_cols=88 Identities=19% Similarity=0.230 Sum_probs=57.3
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
..+-||..||+.|+=+..-. .. ...+++.|.|....++..|.|+|-|=|++..++.. |.....|.-.. ..
T Consensus 263 ymlfElfKNamrATve~h~~-----~~-~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~dr-lf~Y~ySTa~~---~~ 332 (414)
T KOG0787|consen 263 YMLFELFKNAMRATVEHHGD-----DG-DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDR-LFSYMYSTAPA---PS 332 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcc-----CC-CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHH-HHhhhcccCCC---CC
Confidence 57899999999998542111 01 11356777777777788999999999999999954 44566664321 00
Q ss_pred hcCCCCccccccchhhhh
Q psy10019 126 QAGADISMIGQFGVGFYS 143 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S 143 (388)
.+.....+.-.||.|+--
T Consensus 333 ~d~~~~~plaGfG~GLPi 350 (414)
T KOG0787|consen 333 SDNNRTAPLAGFGFGLPI 350 (414)
T ss_pred CCCCCcCcccccccCCcH
Confidence 111114567778888743
No 82
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=94.87 E-value=0.11 Score=54.79 Aligned_cols=43 Identities=28% Similarity=0.516 Sum_probs=33.1
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKA 104 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~e 104 (388)
.+||-+.||+-.... ..+.|.+....+..+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa~A---------------s~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHAQA---------------SEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhccc---------------CeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 689999999877431 3356666666666789999999999855
No 83
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=94.67 E-value=0.11 Score=55.63 Aligned_cols=76 Identities=18% Similarity=0.336 Sum_probs=47.8
Q ss_pred ceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhcc----CeEE
Q psy10019 79 LEIKIIP--DKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA----DKVT 152 (388)
Q Consensus 79 ~~I~I~~--d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~----d~v~ 152 (388)
..|.|.. -.+..++.|.|||+|++..-+.+.|.-.-+-++ .....| -|+|+.-|-.+. -++.
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s-----------~~~y~g-tG~GL~I~kkI~e~H~G~i~ 724 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS-----------RDEYLG-TGLGLAICKKIAERHQGRIW 724 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcCc-----------hhhhcC-CCccHHHHHHHHHHhCceEE
Confidence 3455554 345688999999999999988765542211111 123345 899998876653 4677
Q ss_pred EEeecCCCeeEEEE
Q psy10019 153 VHSKHNDDEQYIWE 166 (388)
Q Consensus 153 V~Sk~~~~~~~~w~ 166 (388)
|.|+......|++.
T Consensus 725 vEs~~gEgsTF~f~ 738 (750)
T COG4251 725 VESTPGEGSTFYFT 738 (750)
T ss_pred EeecCCCceeEEEE
Confidence 77775444455543
No 84
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=94.04 E-value=0.26 Score=43.57 Aligned_cols=89 Identities=28% Similarity=0.427 Sum_probs=55.9
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHH
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~ 124 (388)
..++-|++.||+.+.-+. ++ +...+.|.+..+.+...++|.|.|.|+. ++...+..- +..
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~~----~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~---~~~----- 101 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------DP----SEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG---DTT----- 101 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------CC----CCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC---CCC-----
Confidence 469999999999986531 11 1134677777777778899999996655 665555321 110
Q ss_pred HhcCCCCccccccchhhhhhhhccCeEEEEeecCC
Q psy10019 125 LQAGADISMIGQFGVGFYSAYLVADKVTVHSKHND 159 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~ 159 (388)
.+....| |.||+-+=.+.|+|.+.....+
T Consensus 102 ----~~~~~~~--G~Gl~l~~~~~D~~~~~~~~~~ 130 (146)
T COG2172 102 ----AEGLQEG--GLGLFLAKRLMDEFSYERSEDG 130 (146)
T ss_pred ----Ccccccc--cccHHHHhhhheeEEEEeccCC
Confidence 1112223 6777666667799998855443
No 85
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.45 E-value=0.14 Score=48.35 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=33.5
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCC--CEEEEEeCCCCCCHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKES--RTLTIIDSGIGMTKA 104 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~V~DNG~GMs~e 104 (388)
+|-||+.||+-.... . .....++|.+..+.++ ..++|.|||.|++.+
T Consensus 126 iv~EL~tNa~Khaf~------~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 126 IVHELVTNALKHAFL------S-----RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHhcCC------C-----CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 899999999988651 0 1123455666665554 579999999999854
No 86
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=93.20 E-value=0.079 Score=55.77 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKA 104 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~e 104 (388)
++.||+.||+.+... ..+.|++..+.+.-.|+|+|||.||+.+
T Consensus 414 il~nlL~NAiKha~~---------------~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHADA---------------SAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCCC---------------CEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 567888888776431 2355655555555679999999999853
No 87
>PRK13560 hypothetical protein; Provisional
Probab=92.71 E-value=0.14 Score=55.85 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=30.0
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCC-CCEEEEEeCCCCCCHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKE-SRTLTIIDSGIGMTKA 104 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~V~DNG~GMs~e 104 (388)
+|.+|+.||+.+... . .....+.|.+....+ ...|.|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~---------~--~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP---------D--GAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc---------C--CCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999998531 0 001223444433322 2468999999999975
No 88
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=92.47 E-value=0.24 Score=51.38 Aligned_cols=49 Identities=33% Similarity=0.289 Sum_probs=36.7
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDK---ESRTLTIIDSGIGMTKADLVNNL 110 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~V~DNG~GMs~edl~~~l 110 (388)
++--|+-||+|||.. ..+.|.+.... +..+|.|.|||-|..-+-+.+.|
T Consensus 568 VlvNl~~NaldA~~h---------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl 619 (673)
T COG4192 568 VLVNLIVNALDASTH---------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLL 619 (673)
T ss_pred HHHHHHHHHHhhhcc---------------CCceEEEEeecCcccceEEEEecCCCCCchhHHHHhc
Confidence 777899999999972 12466666644 34679999999999988775444
No 89
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=92.32 E-value=0.56 Score=49.25 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=28.0
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc-CCCCEEEEEeCCCCCCH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD-KESRTLTIIDSGIGMTK 103 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~V~DNG~GMs~ 103 (388)
++.+|+.||+.+... ..+.|.+... .+...|.|.|||+||+.
T Consensus 475 v~~nll~NA~k~~~~---------------~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHANA---------------SEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcCCC---------------CeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 578888888775321 2245555444 23356999999999985
No 90
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=92.32 E-value=0.32 Score=50.60 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=38.6
Q ss_pred CCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEE--cCCCCEEEEEeCCCCCCHHHHH
Q psy10019 41 YSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIP--DKESRTLTIIDSGIGMTKADLV 107 (388)
Q Consensus 41 Ys~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~V~DNG~GMs~edl~ 107 (388)
+-+|...|-=||.||+-|+...+ .+...|.|.. ....-.+.|.|||.||++..+.
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~~------------~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~ 404 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEPK------------RPGGSIAISAKKQDDVIQISISDNGPGIDEEKLE 404 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcccC------------CCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHH
Confidence 44677788899999999986321 1233555544 3233568999999999998774
No 91
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.58 E-value=0.78 Score=50.64 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHHHHHhchHhHhhh----hhhhccCCCccccCCCcceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHH
Q psy10019 47 FLRELISNSSDALDK----IRYESLTDPSRLESKKELEIKIIPDKES--RTLTIIDSGIGMTKADLVNN 109 (388)
Q Consensus 47 ~lRELIqNA~DA~~~----~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~V~DNG~GMs~edl~~~ 109 (388)
.|.=||=||+|.+-. |+ .. +-.+...|.+..-..+ -.|+|+|+|-||+.+-|+..
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~--a~------GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~K 496 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERR--AA------GKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREK 496 (716)
T ss_pred cHHHHHhcchhccCCCHHHHH--Hc------CCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHH
Confidence 466789999999742 21 00 1123457777764433 45899999999999987653
No 92
>KOG1845|consensus
Probab=90.88 E-value=0.25 Score=54.45 Aligned_cols=94 Identities=21% Similarity=0.246 Sum_probs=56.9
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceE--EEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEI--KIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFME 123 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I--~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~ 123 (388)
-++.||+.||+|-.-.+..- .. .....+..+| ....-... .+.|||.||..+-+..++. ++.+.+.++
T Consensus 149 ~a~aeLldnalDEi~~~~tf--~~--vd~I~p~~d~~i~a~~v~~~---~~s~~gg~~~~~~i~~~m~-l~~~~k~e~-- 218 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGATF--VR--VDYINPVMDIFIRALVVQLK---RISDDGGGMKPEVIRKCMS-LGYSSKKEA-- 218 (775)
T ss_pred Chhhhhccccccccccccce--EE--eeeecccccccceeEEeecc---ceeccccccCHHHHHHHHH-hhhhhhhhh--
Confidence 48999999999987642211 00 0000111111 11110000 1668999999999987774 455544321
Q ss_pred HHhcCCCCccccccchhhhh-hhhccCeEEEEee
Q psy10019 124 ALQAGADISMIGQFGVGFYS-AYLVADKVTVHSK 156 (388)
Q Consensus 124 ~~~~~~~~~~IG~FGIGf~S-~F~v~d~v~V~Sk 156 (388)
...+||+|.||.. ..-++..+.|.+|
T Consensus 219 -------~~tv~q~~~gfktst~rlGa~~i~~~R 245 (775)
T KOG1845|consen 219 -------NSTVGQYGNGFKTSTMRLGADAIVFSR 245 (775)
T ss_pred -------hhhhhhhccccccchhhhccceeEeeh
Confidence 3679999999985 4667888888887
No 93
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=90.45 E-value=0.43 Score=51.15 Aligned_cols=55 Identities=20% Similarity=0.440 Sum_probs=38.3
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKES--RTLTIIDSGIGMTKADLVNNL 110 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~V~DNG~GMs~edl~~~l 110 (388)
++--||+||.+|...+.-.. .+.-.|++..+..+ ..+.|.|||.|++.+++.+.|
T Consensus 604 vf~NliKNA~EAi~~~~~~e---------~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~ 660 (712)
T COG5000 604 VFGNLLKNAAEAIEAVEAEE---------RRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRAL 660 (712)
T ss_pred HHHHHHHhHHHHhhhccccc---------CCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhc
Confidence 55669999999998543111 11125677765443 468999999999999987655
No 94
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=88.99 E-value=0.76 Score=46.39 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=38.3
Q ss_pred ceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhh
Q psy10019 79 LEIKIIPDKES--RTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA 144 (388)
Q Consensus 79 ~~I~I~~d~~~--~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~ 144 (388)
.+|++...... -.|.|.|.|.|++++++.+.|-++-+-.+ ......|.=|+|++-+
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk----------ARsR~~gGTGLGLaIa 419 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK----------ARSRKMGGTGLGLAIA 419 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh----------hhhhcCCCCchhHHHH
Confidence 35666554433 45899999999999999888865533322 1124578889998754
No 95
>PRK13559 hypothetical protein; Provisional
Probab=85.19 E-value=1 Score=44.36 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcC--CCCEEEEEeCCCCCCH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDK--ESRTLTIIDSGIGMTK 103 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~l~V~DNG~GMs~ 103 (388)
.+|.||+.||+.+... . .....+.|.+.... ....|.|.|||.|++.
T Consensus 270 ~vl~nLi~NA~k~~~~------~-----~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 270 LVLHELAVNAIKHGAL------S-----ADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHHhHHHhccc------c-----CCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 3788999999887431 0 01123444442132 2356889999998654
No 96
>KOG0355|consensus
Probab=83.09 E-value=1.8 Score=47.89 Aligned_cols=125 Identities=20% Similarity=0.270 Sum_probs=72.1
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLV--------NNLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~--------~~l~~Ig~S 116 (388)
.-.+-|.+-||.| .. | ++. --.|.+.++.+...|.|.+||.|+.-.... -.|+.+.+|
T Consensus 55 ~ki~dEilvNaad-k~--r-----d~~------m~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Llts 120 (842)
T KOG0355|consen 55 YKIFDEILVNAAD-KQ--R-----DPK------MNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTS 120 (842)
T ss_pred HHHHHHHhhcccc-cc--c-----CCC------cceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhc
Confidence 4578899999999 32 1 121 136788888999999999999999865321 245555566
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCC-Ce--eEEEEEecC--CceeeecCCCCCCCCCcEEEE
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHND-DE--QYIWESSAG--GSFTIKPDHGEQLGRGTKMVL 191 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~-~~--~~~w~~~~~--~~~~i~~~~~~~~~~GT~I~l 191 (388)
+.- ......-.-|+-|.|..-|=.++-+..|.|.... .. ...|.+... .+-.+.. .....+|+|++
T Consensus 121 sny------~d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~---~~~~~yTkitF 191 (842)
T KOG0355|consen 121 SNY------DDDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVP---STDEDYTKITF 191 (842)
T ss_pred ccc------CCCccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeec---CCCCCcceEEe
Confidence 531 1111122356666666555444556666665432 12 345665432 2222222 12233999998
Q ss_pred E
Q psy10019 192 Y 192 (388)
Q Consensus 192 ~ 192 (388)
.
T Consensus 192 ~ 192 (842)
T KOG0355|consen 192 S 192 (842)
T ss_pred C
Confidence 4
No 97
>KOG1845|consensus
Probab=71.71 E-value=2.7 Score=46.60 Aligned_cols=53 Identities=23% Similarity=0.518 Sum_probs=38.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhh-hhccCeEEEEeecCC
Q psy10019 92 LTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVADKVTVHSKHND 159 (388)
Q Consensus 92 l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~-F~v~d~v~V~Sk~~~ 159 (388)
++..|+|+||+.+++..... | ......+|++|=|+.|. +-+++.+.+.|+..+
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~---------f------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~ 55 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN---------F------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKES 55 (775)
T ss_pred cccccCCCCcCchhhhhhhh---------h------cccccccccccCcccccccccCcccceeecccc
Confidence 57889999999999865542 1 12346789999998874 667777777777543
No 98
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=67.68 E-value=15 Score=32.35 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=41.0
Q ss_pred ChHHHHHHHhhhccCCcHHHHHHHHHHHHh----hhhhCCC-CCCCHHHHHHHHHHHHHhc
Q psy10019 295 HNIIETLRQKADADKNDKAVKDLVMLLFET----ALLSSGF-GLEDPQVHAARIHRMIKLG 350 (388)
Q Consensus 295 Hpli~~L~~~~~~~~~~~~~~~~a~lL~d~----All~~G~-~l~Dp~~f~~ri~~ll~~~ 350 (388)
||.|+.|+++++.+ +.+..++...|+| +-=.... .+.|=..|..-++.+|..+
T Consensus 2 ~p~vqefk~lIe~d---p~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~A 59 (141)
T PF12588_consen 2 HPVVQEFKDLIESD---PRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTA 59 (141)
T ss_pred ChHHHHHHHHHhcC---HHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhC
Confidence 89999999998554 7899999999999 2222223 4688888999999998754
No 99
>PF14501 HATPase_c_5: GHKL domain
Probab=64.11 E-value=19 Score=29.01 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=39.7
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
..|-=|+.||+.|+.+.. ..+.+.|.+....+...|.|...-.+ ++ ..+ . +.
T Consensus 8 ~il~nlldNAiea~~~~~-----------~~~~I~i~~~~~~~~~~i~i~N~~~~----~~-~~~---~-~~-------- 59 (100)
T PF14501_consen 8 RILGNLLDNAIEACKKYE-----------DKRFISISIREENGFLVIIIENSCEK----EI-EKL---E-SS-------- 59 (100)
T ss_pred HHHHHHHHHHHHHHHhcC-----------CCcEEEEEEEecCCEEEEEEEECCCC----cc-ccc---c-cc--------
Confidence 356678999999987411 12335555554443445666665433 11 111 1 11
Q ss_pred hcCCCCccccccchhhhhhhhccC
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVAD 149 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~d 149 (388)
....+..|+|+.++-.+.+
T Consensus 60 -----~~~~~~~G~GL~~v~~i~~ 78 (100)
T PF14501_consen 60 -----SSKKKGHGIGLKNVKKILE 78 (100)
T ss_pred -----ccCCCCCCcCHHHHHHHHH
Confidence 1334788999998766543
No 100
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=62.85 E-value=11 Score=33.39 Aligned_cols=28 Identities=14% Similarity=0.270 Sum_probs=21.9
Q ss_pred cccccccCCCChHHHHHHHhhhccCCcH
Q psy10019 285 AKKHLEINPDHNIIETLRQKADADKNDK 312 (388)
Q Consensus 285 ~kkiLEINp~Hpli~~L~~~~~~~~~~~ 312 (388)
+-|.=|.+|+|||+++|..+...+-.++
T Consensus 12 QgRLE~d~p~~plv~~~~~L~q~Nms~~ 39 (147)
T PF06112_consen 12 QGRLEADYPNHPLVAKLQALPQNNMSDA 39 (147)
T ss_pred eceecccCCCCHHHHHHHhhccCCCCHH
Confidence 3466789999999999998877665444
No 101
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=62.78 E-value=9.7 Score=38.85 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCCEEEEEeCCCCCC
Q psy10019 78 ELEIKIIPDKESRTLTIIDSGIGMT 102 (388)
Q Consensus 78 ~~~I~I~~d~~~~~l~V~DNG~GMs 102 (388)
.+.|.+..+.+.-.+.|.|||+|++
T Consensus 430 ~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 430 AVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred eEEEEEeeCCcEEEEEEecCCcCCC
Confidence 4677777666667799999999987
No 102
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=58.36 E-value=5.6 Score=43.39 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=25.4
Q ss_pred CCCchHHHHHHHHHhccccccccccccccccccc-CCCChHHHHHHH
Q psy10019 258 DYGWTANMERIMKAQALRDTSTMGYMAAKKHLEI-NPDHNIIETLRQ 303 (388)
Q Consensus 258 ~~~~s~~Merimka~~~~~~~~~~~~~~kkiLEI-Np~Hpli~~L~~ 303 (388)
--|..|-.|+++.. ...-|.||+ ||||||.|+|+.
T Consensus 450 ~iGllP~fE~~F~~-----------~T~~rL~ELsnpNhPLLkkll~ 485 (700)
T COG1480 450 VLGLLPYFEALFGL-----------LTTFRLLELSNPNHPLLKKLLT 485 (700)
T ss_pred HHHHHHHHHHHhcc-----------CchhhHHHhcCCCcHHHHHHHh
Confidence 33666777776655 234577886 999999999974
No 103
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=58.24 E-value=12 Score=37.66 Aligned_cols=49 Identities=12% Similarity=0.295 Sum_probs=33.1
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc--CCCCEEEEEeCCCCCCHHHH
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD--KESRTLTIIDSGIGMTKADL 106 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d--~~~~~l~V~DNG~GMs~edl 106 (388)
.+++.-.+|-|+-..++.. ...+|.|.+. .+.-+++|+|||.|++-..+
T Consensus 357 ~talyRv~QEaltNIErHa-------------~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~ 407 (459)
T COG4564 357 ATALYRVVQEALTNIERHA-------------GATRVTILLQQMGDMVQLMVRDNGVGFSVKEA 407 (459)
T ss_pred HHHHHHHHHHHHHHHHhhc-------------CCeEEEEEeccCCcceEEEEecCCCCccchhh
Confidence 4577777787777766321 2245555553 34567999999999997765
No 104
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=57.64 E-value=43 Score=33.63 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=36.2
Q ss_pred cCCCch---HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCC----CCEEEEEeCCCCCCHHHHHHHH
Q psy10019 40 FYSNKE---IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKE----SRTLTIIDSGIGMTKADLVNNL 110 (388)
Q Consensus 40 LYs~~~---~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~----~~~l~V~DNG~GMs~edl~~~l 110 (388)
+|.|++ -++--|+.||.-|...+.- .. ....+... +-+.+.+-.. ...|.|.|||-|++.+-....|
T Consensus 235 v~~d~DqliQv~LNlVrNAaqA~~~~~~-~~-g~I~LrTR--~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF 308 (363)
T COG3852 235 VLGDRDQLIQVFLNLVRNAAQALGGRAD-EG-GEIILRTR--TGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLF 308 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCCC-CC-ceEEEEec--cceEEEccCceeEeeeeeEEecCCCCCChHHhhhcc
Confidence 355543 3788899999999873110 00 00001111 1222222222 2458999999999987665443
No 105
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.36 E-value=56 Score=29.26 Aligned_cols=83 Identities=20% Similarity=0.148 Sum_probs=50.8
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchh-HHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKA-FMEA 124 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~-f~~~ 124 (388)
...-|||.||+-..+. .++.|+.........+.|...--+-+..+.++.|..|-...-.+ +++.
T Consensus 66 Yl~NELiENAVKfra~---------------geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dLlieR 130 (184)
T COG5381 66 YLANELIENAVKFRAT---------------GEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDLLIER 130 (184)
T ss_pred HHHHHHHHhhhcccCC---------------CcEEEEEEeccceEEEEecccCCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence 3678999999877541 34666666665566677877777778888877776665554332 3455
Q ss_pred HhcCCCCccccccchhhhh
Q psy10019 125 LQAGADISMIGQFGVGFYS 143 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S 143 (388)
+..+.-..--..=|+|++.
T Consensus 131 iEanA~~~d~~gSglGLLT 149 (184)
T COG5381 131 IEANALESDCEGSGLGLLT 149 (184)
T ss_pred HHhhccCCCCcccccccee
Confidence 5432212122334666653
No 106
>KOG0547|consensus
Probab=46.09 E-value=25 Score=37.25 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=46.0
Q ss_pred cccccccCCCChHHHHHHHhhhccCCcHHHHHHHHHHHHhh--hhhCCCCCCCHHHHHHHHHHHHH
Q psy10019 285 AKKHLEINPDHNIIETLRQKADADKNDKAVKDLVMLLFETA--LLSSGFGLEDPQVHAARIHRMIK 348 (388)
Q Consensus 285 ~kkiLEINp~Hpli~~L~~~~~~~~~~~~~~~~a~lL~d~A--ll~~G~~l~Dp~~f~~ri~~ll~ 348 (388)
..+-||+||+| +|.|+++... .+.+.++.+-|||-. +|.+||.=....-|+.|+-+...
T Consensus 172 ~TkALEl~P~Y--~KAl~RRA~A---~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 172 CTKALELNPDY--VKALLRRASA---HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred HHHHhhcCcHH--HHHHHHHHHH---HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence 46889999999 8999887433 367888999999965 47899976667789998866543
No 107
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=40.14 E-value=42 Score=26.29 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=29.0
Q ss_pred chHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCC
Q psy10019 44 KEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGI 99 (388)
Q Consensus 44 ~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~ 99 (388)
....+++|+|+|-+... -|..+.....+.+.|.|.|.
T Consensus 22 ~Sap~Krl~~~ak~~~~-------------------lIdaT~Grktrsviitdsgh 58 (73)
T PF04025_consen 22 DSAPIKRLIQEAKEEGK-------------------LIDATYGRKTRSVIITDSGH 58 (73)
T ss_pred cchhHHHHHHHHHHcCc-------------------EEEeeCCCceeEEEEEcCCc
Confidence 34679999999988864 46666666678899999996
No 108
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=36.22 E-value=50 Score=34.98 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=34.1
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKA 104 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~e 104 (388)
.|-=||.||+-.+-..+ .+...+.|.+..+..+-.+.|+|||.|....
T Consensus 460 ilQPLVENAIKHG~~~~----------~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 460 ILQPLVENAIKHGISQL----------KDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhHHHHHHHHhcccch----------hcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 56679999988764211 1223466776666666789999999999985
No 109
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=36.21 E-value=73 Score=33.64 Aligned_cols=86 Identities=22% Similarity=0.358 Sum_probs=52.6
Q ss_pred CCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCC---CCCCHHHHHHHHHHhhccC
Q psy10019 41 YSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSG---IGMTKADLVNNLGTIAKSG 117 (388)
Q Consensus 41 Ys~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG---~GMs~edl~~~l~~Ig~S~ 117 (388)
+.-|..+|||+|-||+=.- -|. .+ ...+.|.|+ ...|.|...| .||+.+++.+. +|-
T Consensus 268 ~dyP~~alREai~NAv~HR---DYs---~~-----~~~v~I~iy----dDRieI~NPGgl~~gi~~~~l~~~-----~s~ 327 (467)
T COG2865 268 WDYPLEALREAIINAVIHR---DYS---IR-----GRNVHIEIY----DDRIEITNPGGLPPGITPEDLLKG-----RSK 327 (467)
T ss_pred ccCCHHHHHHHHHHHHHhh---ccc---cC-----CCceEEEEE----CCeEEEECCCCCCCCCChhHcccC-----CCc
Confidence 3446779999999997542 222 11 124677765 4689999977 58888887543 343
Q ss_pred ch-hHHHHHhcCCCCccccccchhhhhhhhcc
Q psy10019 118 TK-AFMEALQAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 118 k~-~f~~~~~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
.+ ..+.++- .+..++=+.|-|+-=+|-.+
T Consensus 328 ~RNp~LA~~l--~~~~liE~~GSGi~rm~~~~ 357 (467)
T COG2865 328 SRNPVLAKVL--RDMGLIEERGSGIRRMFDLM 357 (467)
T ss_pred ccCHHHHHHH--HHhhhHHHhCccHHHHHHHH
Confidence 22 1122211 23577889999986555543
No 110
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=30.78 E-value=1e+02 Score=20.20 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=27.0
Q ss_pred eeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHh
Q psy10019 23 FAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 57 (388)
Q Consensus 23 ~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~D 57 (388)
+++.-+....++.++...--+...+||++|.+-++
T Consensus 4 i~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 4 IRLPDELYERLDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp EEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 45666777788888877667888899999987653
No 111
>COG4463 CtsR Transcriptional repressor of class III stress genes [Transcription]
Probab=28.06 E-value=60 Score=28.67 Aligned_cols=42 Identities=26% Similarity=0.503 Sum_probs=35.0
Q ss_pred cccCCCChHHHHHHHhhhccCCcHHHHHHHHHHHHhhhhhCC
Q psy10019 289 LEINPDHNIIETLRQKADADKNDKAVKDLVMLLFETALLSSG 330 (388)
Q Consensus 289 LEINp~Hpli~~L~~~~~~~~~~~~~~~~a~lL~d~All~~G 330 (388)
.|-|-+|.++..|..++...-..+...++..+|||.-+|.+-
T Consensus 73 v~~~~~~~~i~~l~~~I~~~iSq~~~~dII~~Lfde~liter 114 (153)
T COG4463 73 VEYSDNHELINALLQLIGKSISQQAAEDIIQLLFDEKLITER 114 (153)
T ss_pred ecccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Confidence 577889999999998887665566788999999999888763
No 112
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=24.82 E-value=26 Score=22.76 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=12.2
Q ss_pred ccccccCCCChHHHHH
Q psy10019 286 KKHLEINPDHNIIETL 301 (388)
Q Consensus 286 kkiLEINp~Hpli~~L 301 (388)
+|.+|+||+++..-..
T Consensus 3 ~kAie~~P~n~~a~~n 18 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNN 18 (34)
T ss_pred HHHHHHCCCCHHHHHH
Confidence 4779999999876543
No 113
>PRK04323 hypothetical protein; Provisional
Probab=23.65 E-value=1.6e+02 Score=24.09 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=36.0
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCC----CCCCHHHHHHHHH
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSG----IGMTKADLVNNLG 111 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG----~GMs~edl~~~l~ 111 (388)
...+|.++|.|-+.+. -|.+......+.+.|.|.| .+++.+.|.+.|.
T Consensus 27 Sap~Kr~~~~ak~~g~-------------------lidaT~GrktrsvIItds~hV~LSai~~eTl~~R~~ 78 (91)
T PRK04323 27 SAPIKRIIQEARERGM-------------------LIDATYGRKTRAVIITDSGHVILSAIQPETIAHRLS 78 (91)
T ss_pred cHHHHHHHHHHHHcCe-------------------EEeccCCCceeEEEEecCCeEEEeeCCHHHHHHHHh
Confidence 5678999999877754 3455544455789999999 6888888877664
No 114
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=20.65 E-value=79 Score=20.50 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=9.3
Q ss_pred CCCEEEEEeCCC
Q psy10019 88 ESRTLTIIDSGI 99 (388)
Q Consensus 88 ~~~~l~V~DNG~ 99 (388)
++.+|+|.|+|.
T Consensus 12 gn~qITIeD~GP 23 (30)
T PF07492_consen 12 GNFQITIEDTGP 23 (30)
T ss_pred CCcEEEEecCCC
Confidence 357899999985
Done!