Query psy10019
Match_columns 388
No_of_seqs 286 out of 2146
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 15:47:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 1E-66 3.6E-71 551.9 22.7 209 20-228 3-212 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 6.2E-64 2.1E-68 530.4 22.7 206 20-226 22-233 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 1.1E-59 3.7E-64 496.3 20.6 203 20-224 4-211 (624)
4 3peh_A Endoplasmin homolog; st 100.0 1.2E-54 3.9E-59 416.9 24.7 222 18-239 21-244 (281)
5 3nmq_A Heat shock protein HSP 100.0 6.7E-55 2.3E-59 410.7 21.8 226 7-233 4-229 (239)
6 3ied_A Heat shock protein; HSP 100.0 7.7E-53 2.6E-57 397.2 17.9 205 19-225 23-271 (272)
7 3o0i_A HSP90AA1 protein; HSP90 100.0 6.7E-52 2.3E-56 393.8 21.8 233 5-237 22-254 (256)
8 1qy5_A Endoplasmin; GRP94, NEC 100.0 1.2E-50 4.2E-55 389.0 19.3 218 19-237 4-227 (269)
9 3t0h_A Heat shock protein HSP 100.0 3.5E-50 1.2E-54 377.4 21.3 221 17-237 6-226 (228)
10 1yc1_A HSP 86, heat shock prot 100.0 7.6E-47 2.6E-51 362.1 22.0 221 17-237 42-262 (264)
11 2gqp_A Endoplasmin; GRP94, HSP 100.0 6.1E-47 2.1E-51 357.6 19.7 211 19-230 8-224 (236)
12 2wer_A ATP-dependent molecular 100.0 2.7E-46 9.3E-51 349.6 21.4 215 20-234 3-218 (220)
13 1y4s_A Chaperone protein HTPG; 100.0 2.3E-43 7.8E-48 368.0 16.9 204 20-225 4-212 (559)
14 2ior_A Chaperone protein HTPG; 100.0 1.4E-41 4.8E-46 320.8 18.2 205 19-225 23-232 (235)
15 3q6m_A Heat shock protein HSP 99.9 9.9E-29 3.4E-33 249.6 7.6 136 252-388 304-442 (448)
16 1sf8_A Chaperone protein HTPG; 99.9 1.5E-25 5.1E-30 191.5 7.8 87 252-348 36-125 (126)
17 3hjc_A Heat shock protein 83-1 99.9 3.5E-25 1.2E-29 224.4 9.1 106 252-357 320-428 (444)
18 2cge_A ATP-dependent molecular 99.9 2.5E-22 8.5E-27 202.4 9.7 101 252-352 301-405 (405)
19 1b63_A MUTL; DNA mismatch repa 99.8 3.5E-18 1.2E-22 168.6 15.5 168 32-228 12-196 (333)
20 1h7s_A PMS1 protein homolog 2; 99.7 3.4E-17 1.2E-21 163.4 10.4 174 29-227 15-206 (365)
21 3h4l_A DNA mismatch repair pro 99.7 2.1E-17 7.1E-22 164.8 8.5 164 33-224 14-193 (367)
22 3na3_A DNA mismatch repair pro 99.6 2.5E-16 8.7E-21 155.9 8.4 168 32-228 16-200 (348)
23 3fv5_A DNA topoisomerase 4 sub 99.4 6.6E-13 2.3E-17 122.0 11.6 161 44-228 18-193 (201)
24 1mu5_A Type II DNA topoisomera 99.3 1.8E-11 6.3E-16 125.8 11.2 161 45-227 34-210 (471)
25 2zbk_B Type 2 DNA topoisomeras 99.2 3.5E-11 1.2E-15 125.3 10.8 161 45-227 33-209 (530)
26 1kij_A DNA gyrase subunit B; t 99.2 8.1E-11 2.8E-15 118.3 10.9 159 45-227 34-207 (390)
27 1s16_A Topoisomerase IV subuni 99.1 3.4E-10 1.2E-14 113.7 14.0 166 38-227 23-206 (390)
28 4duh_A DNA gyrase subunit B; s 99.1 2.8E-10 9.6E-15 105.8 10.3 159 45-227 37-209 (220)
29 1ei1_A DNA gyrase B, GYRB; ATP 99.1 8.8E-10 3E-14 110.7 14.5 162 43-227 34-208 (391)
30 1zxm_A TOPO IIA ATPase, DNA to 99.1 8.9E-10 3E-14 110.9 13.3 163 45-227 54-233 (400)
31 4emv_A DNA topoisomerase IV, B 99.1 1.2E-09 4.2E-14 101.9 12.7 159 45-228 42-216 (226)
32 2q2e_B Type 2 DNA topoisomeras 99.0 3E-10 1E-14 120.1 6.7 163 45-227 39-214 (621)
33 3cwv_A DNA gyrase, B subunit, 99.0 4.5E-09 1.5E-13 104.8 14.2 154 44-227 31-196 (369)
34 3lnu_A Topoisomerase IV subuni 98.8 5.4E-08 1.8E-12 98.0 14.7 164 38-227 42-225 (408)
35 3ttz_A DNA gyrase subunit B; p 98.7 8E-08 2.7E-12 87.9 10.9 142 45-227 33-182 (198)
36 1pvg_A DNA topoisomerase II; G 98.5 6.4E-07 2.2E-11 90.6 13.7 161 46-227 67-246 (418)
37 1th8_A Anti-sigma F factor; SP 98.1 8.3E-06 2.8E-10 69.0 7.8 87 45-158 41-127 (145)
38 1id0_A PHOQ histidine kinase; 97.9 1.7E-05 5.8E-10 66.9 7.1 72 46-147 47-118 (152)
39 1ysr_A Sensor-type histidine k 97.9 2.7E-05 9.2E-10 65.7 7.3 75 46-148 49-123 (150)
40 4ew8_A Sensor protein DIVL; si 97.8 5.5E-05 1.9E-09 69.7 8.6 73 46-148 158-230 (268)
41 3jz3_A Sensor protein QSEC; he 97.8 2.4E-05 8.3E-10 69.7 5.6 72 46-148 120-191 (222)
42 3d36_A Sporulation kinase B; G 97.8 6.2E-05 2.1E-09 68.0 8.4 74 46-148 126-199 (244)
43 1i58_A Chemotaxis protein CHEA 97.8 4.4E-05 1.5E-09 67.2 6.9 59 47-107 51-109 (189)
44 2btz_A Pyruvate dehydrogenase 97.7 8.4E-05 2.9E-09 73.7 9.4 100 46-157 234-337 (394)
45 2c2a_A Sensor histidine kinase 97.7 5.3E-05 1.8E-09 69.8 6.9 82 46-148 141-222 (258)
46 2e0a_A Pyruvate dehydrogenase 97.7 8.9E-05 3E-09 73.6 8.7 100 46-156 233-336 (394)
47 3ehh_A Sensor kinase (YOCF pro 97.7 5.8E-05 2E-09 67.5 6.7 45 47-106 134-178 (218)
48 2q8g_A [pyruvate dehydrogenase 97.7 8E-05 2.7E-09 74.3 8.3 100 46-156 246-349 (407)
49 1r62_A Nitrogen regulation pro 97.7 7.7E-05 2.6E-09 63.0 6.8 82 46-156 51-146 (160)
50 3sl2_A Sensor histidine kinase 97.6 3.8E-05 1.3E-09 66.9 4.8 78 46-147 46-125 (177)
51 1y8o_A [pyruvate dehydrogenase 97.6 9.7E-05 3.3E-09 74.1 8.1 101 46-156 256-360 (419)
52 3a0y_A Sensor protein; ATP-LID 97.6 4.2E-05 1.4E-09 64.2 4.5 72 46-147 50-121 (152)
53 1bxd_A ENVZ(290-450), protein 97.6 3.9E-05 1.3E-09 65.6 4.3 84 46-157 50-137 (161)
54 4gfh_A DNA topoisomerase 2; to 97.6 0.00026 8.7E-09 79.8 11.8 126 46-193 62-201 (1177)
55 1gkz_A [3-methyl-2-oxobutanoat 97.5 9.1E-05 3.1E-09 73.3 6.0 104 46-156 241-359 (388)
56 3ehg_A Sensor kinase (YOCF pro 97.4 0.00022 7.4E-09 59.0 6.3 46 46-106 43-88 (128)
57 3zxo_A Redox sensor histidine 97.3 0.00022 7.7E-09 58.4 5.2 44 46-105 46-89 (129)
58 1b3q_A Protein (chemotaxis pro 97.2 0.00084 2.9E-08 66.5 9.2 106 47-163 110-241 (379)
59 3zxq_A Hypoxia sensor histidin 97.1 0.00075 2.6E-08 54.9 6.6 44 46-105 42-85 (124)
60 3a0r_A Sensor protein; four he 96.9 0.00028 9.4E-09 67.2 1.7 50 47-110 248-297 (349)
61 4fpp_A Phosphotransferase; fou 96.1 0.0092 3.1E-07 55.0 6.5 48 47-108 150-199 (247)
62 3ke6_A Protein RV1364C/MT1410; 93.4 0.12 4.3E-06 51.1 6.9 73 46-156 300-373 (399)
63 1ixm_A SPO0B, protein (sporula 84.9 0.88 3E-05 40.7 4.6 56 47-110 109-166 (192)
64 1y4s_A Chaperone protein HTPG; 83.4 0.22 7.7E-06 51.8 0.0 22 253-274 535-559 (559)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-66 Score=551.88 Aligned_cols=209 Identities=72% Similarity=1.110 Sum_probs=192.5
Q ss_pred ceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCC
Q psy10019 20 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGI 99 (388)
Q Consensus 20 ~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~ 99 (388)
.+++.||+++++|+++|+++||+|+.+|||||||||+||++++||.++++++.+...+.++|+|.++.++.+|+|.|||+
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 48899999999999999999999999999999999999999999999999988777777899999988889999999999
Q ss_pred CCCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCceeeecCC
Q psy10019 100 GMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDH 179 (388)
Q Consensus 100 GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~i~~~~ 179 (388)
|||+++|.++|++||+||++.|+++++...+...||||||||||+|++|++|+|+|++.++.+|.|.+.+++.|++.+..
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~ 162 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDE 162 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECC
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecC
Confidence 99999999999999999999998777655567899999999999999999999999998878999999999999998742
Q ss_pred -CCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeee
Q psy10019 180 -GEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKE 228 (388)
Q Consensus 180 -~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~ 228 (388)
+....+||+|+|+|++++.+|++.++|+++|++||+|++|||+++.+++
T Consensus 163 ~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~ 212 (677)
T 2cg9_A 163 VNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKE 212 (677)
T ss_dssp SSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCC
T ss_pred CCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccc
Confidence 2456899999999999999999999999999999999999999975444
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=6.2e-64 Score=530.44 Aligned_cols=206 Identities=57% Similarity=0.892 Sum_probs=155.5
Q ss_pred ceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCC
Q psy10019 20 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGI 99 (388)
Q Consensus 20 ~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~ 99 (388)
.+++.||+++++|+++|+++||+++.+|||||||||+||++++||.+++++..+...+.+.|+|.++.++.+|+|.|||+
T Consensus 22 ~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 101 (666)
T 2o1u_A 22 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 101 (666)
T ss_dssp ------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCC
Confidence 48899999999999999999999999999999999999999999999999987776777899999988889999999999
Q ss_pred CCCHHHHHHHHHHhhccCchhHHHHHhcC-----CCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCcee
Q psy10019 100 GMTKADLVNNLGTIAKSGTKAFMEALQAG-----ADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFT 174 (388)
Q Consensus 100 GMs~edl~~~l~~Ig~S~k~~f~~~~~~~-----~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~ 174 (388)
|||+++|.++|++||+||++.|+++++.. .+...||+|||||||+|++|++|+|+|++.++.+|.|.+.+ +.|.
T Consensus 102 GMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~g-g~~t 180 (666)
T 2o1u_A 102 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFS 180 (666)
T ss_dssp CCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESS-SCCE
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeC-CeEE
Confidence 99999999999999999999998887653 46789999999999999999999999999877799999998 8898
Q ss_pred eecCC-CCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeee
Q psy10019 175 IKPDH-GEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVE 226 (388)
Q Consensus 175 i~~~~-~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~ 226 (388)
+.+.. .....+||+|+|+|+++..+|++.++|+++|++||+|+++||+++.+
T Consensus 181 i~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~ 233 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSS 233 (666)
T ss_dssp EEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEEC
T ss_pred EEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEecc
Confidence 88742 22468999999999999999999999999999999999999999653
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=1.1e-59 Score=496.33 Aligned_cols=203 Identities=47% Similarity=0.819 Sum_probs=166.2
Q ss_pred ceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCC
Q psy10019 20 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGI 99 (388)
Q Consensus 20 ~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~ 99 (388)
.+++.||+++++|+++|+++||+|+.+|||||||||+||++++||.+++++..+.....++|+|.++.++.+|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 83 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCC
Confidence 37899999999999999999999999999999999999999999999999887766667889998888889999999999
Q ss_pred CCCHHHHHHHHHHhhccCchhHHHHHhc--CCCCccccccchhhhhhhhccCeEEEEeecCC---CeeEEEEEecCCcee
Q psy10019 100 GMTKADLVNNLGTIAKSGTKAFMEALQA--GADISMIGQFGVGFYSAYLVADKVTVHSKHND---DEQYIWESSAGGSFT 174 (388)
Q Consensus 100 GMs~edl~~~l~~Ig~S~k~~f~~~~~~--~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~---~~~~~w~~~~~~~~~ 174 (388)
|||+++|.++|++||+|+++.|+++++. ..+...||+||+||||+|++|++|+|+|++.+ ..+|.|++.+++.|.
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~ 163 (624)
T 2ioq_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYT 163 (624)
T ss_dssp CCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCE
T ss_pred CCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeEE
Confidence 9999999999999999999999877754 24578999999999999999999999999876 468999999988899
Q ss_pred eecCCCCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEe
Q psy10019 175 IKPDHGEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLL 224 (388)
Q Consensus 175 i~~~~~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~ 224 (388)
+.+. ....+||+|+|+|+++..+|++.++|+++|++||.|+++||+++
T Consensus 164 i~~~--~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~ 211 (624)
T 2ioq_A 164 VADI--TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIE 211 (624)
T ss_dssp EEEE--CCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEE
T ss_pred EEEC--CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEe
Confidence 8864 34579999999999999999999999999999999999999994
No 4
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=1.2e-54 Score=416.88 Aligned_cols=222 Identities=55% Similarity=0.878 Sum_probs=207.3
Q ss_pred CCceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeC
Q psy10019 18 GDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDS 97 (388)
Q Consensus 18 ~~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DN 97 (388)
...+++.||+++++|+++|+++||+|+.+|||||||||+||++++||.+++++..+...+.+.|+|.++..+++|+|.||
T Consensus 21 ~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DN 100 (281)
T 3peh_A 21 ESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDT 100 (281)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred hccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeC
Confidence 44689999999999999999999999999999999999999999999999999888778889999999988899999999
Q ss_pred CCCCCHHHHHHHHHHhhccCchhHHHHHhc-CCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCceeee
Q psy10019 98 GIGMTKADLVNNLGTIAKSGTKAFMEALQA-GADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIK 176 (388)
Q Consensus 98 G~GMs~edl~~~l~~Ig~S~k~~f~~~~~~-~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~i~ 176 (388)
|+|||+++|.++|++||+||++.|+++++. +.+...||+|||||||+|++|++|+|.|++.++.+|.|++.+++.|+|.
T Consensus 101 GiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~fti~ 180 (281)
T 3peh_A 101 GIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIY 180 (281)
T ss_dssp SCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccEEEE
Confidence 999999999999999999999999998875 4567899999999999999999999999998888999999999999998
Q ss_pred cCC-CCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeeeeeccchhHH
Q psy10019 177 PDH-GEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEE 239 (388)
Q Consensus 177 ~~~-~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~~~~~~~~~~ 239 (388)
+.+ +....+||+|+|+|+++..+|++.++|+++|++||+|++|||+++.++++.++++++|++
T Consensus 181 ~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~ 244 (281)
T 3peh_A 181 KDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAK 244 (281)
T ss_dssp ECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHH
T ss_pred EcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhh
Confidence 753 346789999999999999999999999999999999999999999999999999987644
No 5
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=6.7e-55 Score=410.67 Aligned_cols=226 Identities=80% Similarity=1.188 Sum_probs=200.0
Q ss_pred CCCccccccccCCceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc
Q psy10019 7 RMPEQDVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD 86 (388)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d 86 (388)
-||.+ +.++.+..+++.||+++++|+++|+++||+++++|||||||||+||++++||.+++++..+...+.+.|+|..+
T Consensus 4 ~~~~~-~~~~~~~~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d 82 (239)
T 3nmq_A 4 LMPEE-VHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPN 82 (239)
T ss_dssp ---------CTTCCEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEE
T ss_pred cCccc-cccccccceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEe
Confidence 36764 44455568999999999999999999999999999999999999999999999999998877778889999999
Q ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEE
Q psy10019 87 KESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWE 166 (388)
Q Consensus 87 ~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~ 166 (388)
....+|+|.|||+|||+++|.++|++||+|+++.|+++++.+.+...||||||||||+|++|++|+|.|++.++.+|.|+
T Consensus 83 ~~~~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~ 162 (239)
T 3nmq_A 83 PQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWE 162 (239)
T ss_dssp TTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEE
T ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEE
Confidence 88999999999999999999999999999999999988876667889999999999999999999999999888899999
Q ss_pred EecCCceeeecCCCCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeeeeec
Q psy10019 167 SSAGGSFTIKPDHGEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKEL 233 (388)
Q Consensus 167 ~~~~~~~~i~~~~~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~~~~ 233 (388)
+.+++.|+|++.+.....+||+|+|+|+++..+|++.++|+++|++||+|++|||+++.++++.++.
T Consensus 163 s~~~g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~~~~~~~ 229 (239)
T 3nmq_A 163 SSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKGE 229 (239)
T ss_dssp ECSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCSCC----
T ss_pred ECCCCcEEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeeeeccHHH
Confidence 9999999998864456789999999999999999999999999999999999999999887766543
No 6
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=7.7e-53 Score=397.21 Aligned_cols=205 Identities=50% Similarity=0.855 Sum_probs=185.1
Q ss_pred CceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccc-------------------------
Q psy10019 19 DVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRL------------------------- 73 (388)
Q Consensus 19 ~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~------------------------- 73 (388)
..+++.||+++++||+||+++||+|+.+|||||||||.|||.++| .+++++..+
T Consensus 23 ~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (272)
T 3ied_A 23 PVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVNE 101 (272)
T ss_dssp ECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--------------------
T ss_pred ccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhcccccccccccccccccccccccc
Confidence 458999999999999999999999999999999999999999988 767654322
Q ss_pred ------------cCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHhcC-CCCccccccchh
Q psy10019 74 ------------ESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVG 140 (388)
Q Consensus 74 ------------~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~-~~~~~IG~FGIG 140 (388)
...+.+.|+|.++...++|+|.|||+|||+++|.++|++||+|+++.|+++++.+ .+...|||||||
T Consensus 102 ~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVG 181 (272)
T 3ied_A 102 STDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVG 181 (272)
T ss_dssp ------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCG
T ss_pred ccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccce
Confidence 2234679999999999999999999999999999999999999999999888764 568899999999
Q ss_pred hhhhhhccCeEEEEeecCCCeeEEEEEecCCceeeecCC------CCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhc
Q psy10019 141 FYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDH------GEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHS 214 (388)
Q Consensus 141 f~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~i~~~~------~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys 214 (388)
|||+||+|++|+|+|+ .++.+|.|++.+++.|+|.+.+ +....+||+|+|+|++++.+|++.++|+++|++||
T Consensus 182 FySaFmVAdkV~V~Sk-~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys 260 (272)
T 3ied_A 182 FYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYS 260 (272)
T ss_dssp GGGGGGTEEEEEEEEE-SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHC
T ss_pred eheeeccCCEEEEEEc-CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHH
Confidence 9999999999999999 6678999999999999998753 23578999999999999999999999999999999
Q ss_pred ccCCcceEEee
Q psy10019 215 QFIGYPIKLLV 225 (388)
Q Consensus 215 ~~l~~PI~i~~ 225 (388)
.|++|||+++.
T Consensus 261 ~fi~~PI~l~~ 271 (272)
T 3ied_A 261 EFIKFPIEIWS 271 (272)
T ss_dssp TTCCSCEEECC
T ss_pred hCCCCCeEEEe
Confidence 99999999985
No 7
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=6.7e-52 Score=393.85 Aligned_cols=233 Identities=80% Similarity=1.191 Sum_probs=194.7
Q ss_pred CCCCCccccccccCCceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEE
Q psy10019 5 PQRMPEQDVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKII 84 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~ 84 (388)
|..++.|+-.+...+.+++.||+++++|+++|+++||+++.+|||||||||+||++++||.+++++..+...+.++|+|.
T Consensus 22 ~~~~~~~~~~~~~~~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~ 101 (256)
T 3o0i_A 22 PEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLI 101 (256)
T ss_dssp --------------CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEE
T ss_pred CccccccccccccccceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEE
Confidence 45556677777778899999999999999999999999999999999999999999999999999988777788899999
Q ss_pred EcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEE
Q psy10019 85 PDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYI 164 (388)
Q Consensus 85 ~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~ 164 (388)
.+.+..+|+|.|||+||++++|..+|++||+|+++.|.+.++.+.+...+|+||+||+|+|+||++|+|.|++.+..+|.
T Consensus 102 ~d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~ 181 (256)
T 3o0i_A 102 PNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYA 181 (256)
T ss_dssp EETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEE
T ss_pred EcCCceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEE
Confidence 98888999999999999999999999999999999898877654567899999999999999999999999998778999
Q ss_pred EEEecCCceeeecCCCCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeeeeeccchh
Q psy10019 165 WESSAGGSFTIKPDHGEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDE 237 (388)
Q Consensus 165 w~~~~~~~~~i~~~~~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~~~~~~~~ 237 (388)
|++.+++.|.+.+.+.....+||+|+|+||.+..+|++..+|+++|++||+||++||+++.+++++++++++|
T Consensus 182 w~s~gg~~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~~~~ 254 (256)
T 3o0i_A 182 WESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDE 254 (256)
T ss_dssp EEECSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEECCC-----------
T ss_pred EEEeccceEEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCCCcc
Confidence 9999988999987544567899999999999999999999999999999999999999999999998888655
No 8
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=1.2e-50 Score=389.04 Aligned_cols=218 Identities=55% Similarity=0.854 Sum_probs=193.3
Q ss_pred CceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCC
Q psy10019 19 DVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSG 98 (388)
Q Consensus 19 ~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG 98 (388)
..+++.||+++++|+++|+++||+|+.+|||||||||+||++++||.++++++.+...+.+.|+|..+.+..+|+|.|||
T Consensus 4 ~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnG 83 (269)
T 1qy5_A 4 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 83 (269)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECC
Confidence 46899999999999999999999999999999999999999999999999998877777889999998888999999999
Q ss_pred CCCCHHHHHHHHHHhhccCchhHHHHHhcC-----CCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCce
Q psy10019 99 IGMTKADLVNNLGTIAKSGTKAFMEALQAG-----ADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSF 173 (388)
Q Consensus 99 ~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~-----~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~ 173 (388)
+||++++|.++|++||+||++.|+++++.. .+...||+|||||||+|++|++|+|.|++.++.+|.|.+.+ +.|
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~g-g~~ 162 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEF 162 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECS-SCE
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeC-CEE
Confidence 999999999999999999999998887653 56789999999999999999999999999887899999988 889
Q ss_pred eeecCC-CCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeeeeeccchh
Q psy10019 174 TIKPDH-GEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDE 237 (388)
Q Consensus 174 ~i~~~~-~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~~~~~~~~ 237 (388)
.+.+.. .....+||+|+|+|+.+..+|++.++|+++|++||+|++|||+++.+++..+++++++
T Consensus 163 ~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~ 227 (269)
T 1qy5_A 163 SVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEE 227 (269)
T ss_dssp EEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC---------
T ss_pred EEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccc
Confidence 988643 2346899999999999999999999999999999999999999999999888877655
No 9
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=3.5e-50 Score=377.45 Aligned_cols=221 Identities=83% Similarity=1.227 Sum_probs=192.1
Q ss_pred cCCceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEe
Q psy10019 17 QGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIID 96 (388)
Q Consensus 17 ~~~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~D 96 (388)
....+++.||+++++|+++|+++||+++.+|||||||||+||++++||..++++..+...+.+.|+|..+.+..+|+|.|
T Consensus 6 ~~~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~D 85 (228)
T 3t0h_A 6 EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVD 85 (228)
T ss_dssp --CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEE
T ss_pred cccccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEe
Confidence 34569999999999999999999999999999999999999999999999988887766777899998888889999999
Q ss_pred CCCCCCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCceeee
Q psy10019 97 SGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIK 176 (388)
Q Consensus 97 NG~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~i~ 176 (388)
||+||++++|..+|++||+|+++.|.+.++.+.+...+|+||+||+|+|++|++|+|.|++.+..+|.|.+.+++.|.+.
T Consensus 86 nG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~v~ 165 (228)
T 3t0h_A 86 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVR 165 (228)
T ss_dssp CSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEE
T ss_pred CCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEEEe
Confidence 99999999999999999999998887777544567899999999999999999999999998778999999998889998
Q ss_pred cCCCCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeeeeeccchh
Q psy10019 177 PDHGEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDE 237 (388)
Q Consensus 177 ~~~~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~~~~~~~~ 237 (388)
+.+.....+||+|+|+|+++..+|++..+|+++|++||+||++||+++.+++.++++++++
T Consensus 166 ~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~~~~ 226 (228)
T 3t0h_A 166 TDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDE 226 (228)
T ss_dssp ECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC-----------
T ss_pred ecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCCCcc
Confidence 7543467899999999999999999999999999999999999999999999888888654
No 10
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=7.6e-47 Score=362.07 Aligned_cols=221 Identities=82% Similarity=1.226 Sum_probs=191.5
Q ss_pred cCCceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEe
Q psy10019 17 QGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIID 96 (388)
Q Consensus 17 ~~~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~D 96 (388)
....+++.|++++++|+++|+++||+++.+|||||||||+||++++||..+.+++.......+.|.|..+....+|+|.|
T Consensus 42 ~~~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~D 121 (264)
T 1yc1_A 42 EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVD 121 (264)
T ss_dssp -CCEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEE
T ss_pred cccceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEE
Confidence 34569999999999999999999999999999999999999999999988888877666677888888877788999999
Q ss_pred CCCCCCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCceeee
Q psy10019 97 SGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIK 176 (388)
Q Consensus 97 NG~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~i~ 176 (388)
||+||++++|.++|++||+|+++.|.++++...+...||+||+||||+|++|++|+|.|++.+..+|.|++.+++.|.+.
T Consensus 122 nG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~ 201 (264)
T 1yc1_A 122 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVR 201 (264)
T ss_dssp CSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEE
T ss_pred CCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEe
Confidence 99999999999999999999999888877755567899999999999999999999999998777899999988889888
Q ss_pred cCCCCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeeeeeccchh
Q psy10019 177 PDHGEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDE 237 (388)
Q Consensus 177 ~~~~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~~~~~~~~ 237 (388)
+.+.....+||+|+|+|+.+..+|++..+|+++|++||+|+++||+++.+++..++++++|
T Consensus 202 ~~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~~~~~~~~ 262 (264)
T 1yc1_A 202 TDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDE 262 (264)
T ss_dssp ECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC----------
T ss_pred ecCCCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeeccccccccCCCC
Confidence 7533356899999999999999999999999999999999999999999888776665433
No 11
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=6.1e-47 Score=357.64 Aligned_cols=211 Identities=56% Similarity=0.874 Sum_probs=176.9
Q ss_pred CceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCC
Q psy10019 19 DVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSG 98 (388)
Q Consensus 19 ~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG 98 (388)
..+++.|++++++|+++|+++||+++.+|||||||||+||++++||..++++..+...+.+.|+|..+.+..+|+|.|||
T Consensus 8 ~~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG 87 (236)
T 2gqp_A 8 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 87 (236)
T ss_dssp TTTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999999988888766667788999888888899999999
Q ss_pred CCCCHHHHHHHHHHhhccCchhHHHHHhcC-----CCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCce
Q psy10019 99 IGMTKADLVNNLGTIAKSGTKAFMEALQAG-----ADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSF 173 (388)
Q Consensus 99 ~GMs~edl~~~l~~Ig~S~k~~f~~~~~~~-----~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~ 173 (388)
+||+++||.++|++||+|+++.|.++++.. .+...||+|||||+|+|++|++|+|.|++.+..+|.|++.+ +.|
T Consensus 88 ~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~g-g~~ 166 (236)
T 2gqp_A 88 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEF 166 (236)
T ss_dssp CCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESS-SCE
T ss_pred cCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeC-CEE
Confidence 999999999999999999999887777643 46679999999999999999999999999877789999988 788
Q ss_pred eeecCC-CCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeee
Q psy10019 174 TIKPDH-GEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKERE 230 (388)
Q Consensus 174 ~i~~~~-~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~ 230 (388)
.+.+.. .....+||+|+|+|+++..+|++..+|+++|++||+|++|||+++.+++..
T Consensus 167 ~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~~~~~ 224 (236)
T 2gqp_A 167 SVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGG 224 (236)
T ss_dssp EEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEECC--
T ss_pred EEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeeeeccC
Confidence 887643 234679999999999999999999999999999999999999998876543
No 12
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=2.7e-46 Score=349.57 Aligned_cols=215 Identities=71% Similarity=1.091 Sum_probs=191.7
Q ss_pred ceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCC
Q psy10019 20 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGI 99 (388)
Q Consensus 20 ~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~ 99 (388)
.+++.|++++++|+++|+++||+++.+|||||||||+||++++||..++++..+...+.+.|.|..+.+..+|+|.|||+
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~ 82 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCC
Confidence 48899999999999999999999999999999999999999999998888877666677888888877778999999999
Q ss_pred CCCHHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCceeeecCC
Q psy10019 100 GMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDH 179 (388)
Q Consensus 100 GMs~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~i~~~~ 179 (388)
||++++|.++|++||+|+++.|.++++...+...+|+||+||||+|+++++|+|.|++.+..++.|.+.+++.|.+.+..
T Consensus 83 GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~~~ 162 (220)
T 2wer_A 83 GMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDE 162 (220)
T ss_dssp CCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEECS
T ss_pred CCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeeccc
Confidence 99999999999999999999898888765677899999999999999999999999988777999999988889887642
Q ss_pred -CCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEeeeeeeeeecc
Q psy10019 180 -GEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELE 234 (388)
Q Consensus 180 -~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~~~~~~~~~~ 234 (388)
.....+||+|+|+|+.++.+|++..+|++++++||+|+++||+++.++++.++++
T Consensus 163 ~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~~~~~~ 218 (220)
T 2wer_A 163 VNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVP 218 (220)
T ss_dssp SSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCCCCC----
T ss_pred CCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEeccccccccC
Confidence 2356799999999999999999999999999999999999999999876665544
No 13
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=2.3e-43 Score=368.04 Aligned_cols=204 Identities=47% Similarity=0.812 Sum_probs=183.3
Q ss_pred ceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCC
Q psy10019 20 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGI 99 (388)
Q Consensus 20 ~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~ 99 (388)
.+++.||+++++|+++|+++||+|+.+|||||||||+||++++||.+++++..+.....++|+|.++.++.+|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 83 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSS
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCC
Confidence 48899999999999999999999999999999999999999999999999887766677889999988889999999999
Q ss_pred CCCHHHHHHHHHHhhccCchhHHHHHhcC--CCCccccccchhhhhhhhccCeEEEEeecCC---CeeEEEEEecCCcee
Q psy10019 100 GMTKADLVNNLGTIAKSGTKAFMEALQAG--ADISMIGQFGVGFYSAYLVADKVTVHSKHND---DEQYIWESSAGGSFT 174 (388)
Q Consensus 100 GMs~edl~~~l~~Ig~S~k~~f~~~~~~~--~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~---~~~~~w~~~~~~~~~ 174 (388)
|||+++|.++|++||+|+++.|+++++.. .+...||+||+||||+|++|++|+|+|++.+ ..+|.|++.+++.|.
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~ 163 (559)
T 1y4s_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYT 163 (559)
T ss_dssp CCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEE
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeE
Confidence 99999999999999999998886655432 3567999999999999999999999999986 468999999988999
Q ss_pred eecCCCCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEee
Q psy10019 175 IKPDHGEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLV 225 (388)
Q Consensus 175 i~~~~~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~ 225 (388)
+.+. ....+||+|+|+|+++..+|++.++|+++|++||.|+++||+++.
T Consensus 164 i~~~--~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~ 212 (559)
T 1y4s_A 164 VADI--TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEK 212 (559)
T ss_dssp EEEE--CCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred EeEC--CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEee
Confidence 9864 345799999999999999999999999999999999999999964
No 14
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=1.4e-41 Score=320.80 Aligned_cols=205 Identities=46% Similarity=0.808 Sum_probs=180.3
Q ss_pred CceeeeehhhHHHHHHHHHHhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCC
Q psy10019 19 DVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSG 98 (388)
Q Consensus 19 ~~~~~~F~vd~~~ll~lL~~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG 98 (388)
..+++.|++++++|+++|++.||+++.+|||||||||+||++++||..+.++........+.|.|.++.++..|+|.|||
T Consensus 23 ~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG 102 (235)
T 2ior_A 23 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG 102 (235)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred ccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECC
Confidence 45899999999999999999999999999999999999999999998888776655555678888888777899999999
Q ss_pred CCCCHHHHHHHHHHhhccCchhHHHHHhc--CCCCccccccchhhhhhhhccCeEEEEeecCC---CeeEEEEEecCCce
Q psy10019 99 IGMTKADLVNNLGTIAKSGTKAFMEALQA--GADISMIGQFGVGFYSAYLVADKVTVHSKHND---DEQYIWESSAGGSF 173 (388)
Q Consensus 99 ~GMs~edl~~~l~~Ig~S~k~~f~~~~~~--~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~---~~~~~w~~~~~~~~ 173 (388)
+||++++|..+|+++|+|+++.|.++++. ..+...+|+||+||+|+|+++++|+|.|++.+ ..+|.|...+++.|
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~ 182 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY 182 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEE
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcE
Confidence 99999999999999999999888655431 12357899999999999999999999999875 35899999988888
Q ss_pred eeecCCCCCCCCCcEEEEEEeeCccccccHHHHHHHHHHhcccCCcceEEee
Q psy10019 174 TIKPDHGEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLV 225 (388)
Q Consensus 174 ~i~~~~~~~~~~GT~I~l~Lk~~~~e~~~~~~i~~~i~kys~~l~~PI~i~~ 225 (388)
.+.+. ....+||+|+|+|+++..+|++..+|+++|++||+||++||+++.
T Consensus 183 ~i~~~--~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 183 TVADI--TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp EEEEE--CCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred EEeeC--CCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 88763 355799999999999989999999999999999999999999974
No 15
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=99.95 E-value=9.9e-29 Score=249.55 Aligned_cols=136 Identities=75% Similarity=1.122 Sum_probs=82.4
Q ss_pred CCCC---cCCCCchHHHHHHHHHhcccccccccccccccccccCCCChHHHHHHHhhhccCCcHHHHHHHHHHHHhhhhh
Q psy10019 252 KTPK---IEDYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKADADKNDKAVKDLVMLLFETALLS 328 (388)
Q Consensus 252 ~sP~---v~~~~~s~~Merimka~~~~~~~~~~~~~~kkiLEINp~Hpli~~L~~~~~~~~~~~~~~~~a~lL~d~All~ 328 (388)
.||+ ++++|||++|||||++|+.++..+++++.+||||||||+||||++|..+...+.+++.++++|++|||||+|+
T Consensus 304 ~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~lLyd~AlL~ 383 (448)
T 3q6m_A 304 TSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLS 383 (448)
T ss_dssp SSSEEEEECSSSCCHHHHHHCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCcchhHHHHHHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHHHHHHhHHhc
Confidence 4996 3899999999999999997666556778899999999999999999988777777788999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhccCCCCCCCCchhhccccCCCCCCCCCCCccccccccCC
Q psy10019 329 SGFGLEDPQVHAARIHRMIKLGLGIDDDDEVPAEASKAADVDITPVDGDSEDASRMEEVD 388 (388)
Q Consensus 329 ~G~~l~Dp~~f~~ri~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
+|+.|+||+.|++|||+||.++||+++++++++++++++.++.||.+.+ ++.+.+++||
T Consensus 384 ~G~~l~DP~~f~~ri~~ll~~~L~id~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 442 (448)
T 3q6m_A 384 SGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGD-DDTSRMEEVD 442 (448)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHTTC------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCCccccccccccccccCCCCCCCCC-cchhhhhhhc
Confidence 9999999999999999999999999998877666556667777887764 5555555554
No 16
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=99.92 E-value=1.5e-25 Score=191.54 Aligned_cols=87 Identities=24% Similarity=0.444 Sum_probs=77.5
Q ss_pred CCCC---cCCCCchHHHHHHHHHhcccccccccccccccccccCCCChHHHHHHHhhhccCCcHHHHHHHHHHHHhhhhh
Q psy10019 252 KTPK---IEDYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKADADKNDKAVKDLVMLLFETALLS 328 (388)
Q Consensus 252 ~sP~---v~~~~~s~~Merimka~~~~~~~~~~~~~~kkiLEINp~Hpli~~L~~~~~~~~~~~~~~~~a~lL~d~All~ 328 (388)
+||+ ++++|||++|||||++|+|+ ++.+||||||||+||||++|... .+++.++++|++|||+|+|+
T Consensus 36 ~sPa~lv~~e~g~s~~Merimka~~~~------~~~~k~~LEINp~HplIk~L~~~----~~~~~~k~l~~lLyd~AlL~ 105 (126)
T 1sf8_A 36 DTPAIVSTDADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLVKRAADT----EDEAKFSEWVELLLDQALLA 105 (126)
T ss_dssp SCCEEEECCTTSCCHHHHHHHHTTTSC------CCCCCCEEEECTTSHHHHHHHHC----CSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCcccCHHHHHHHHHhccc------cccCCeeeeECCCCHHHHHHHHh----cChHHHHHHHHHHHHHHHHH
Confidence 4895 48999999999999999852 45689999999999999999753 34567999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q psy10019 329 SGFGLEDPQVHAARIHRMIK 348 (388)
Q Consensus 329 ~G~~l~Dp~~f~~ri~~ll~ 348 (388)
+|+.++||+.|++|||+||.
T Consensus 106 ~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 106 ERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp HHSCCSSHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHHh
Confidence 99999999999999999985
No 17
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=99.91 E-value=3.5e-25 Score=224.42 Aligned_cols=106 Identities=58% Similarity=0.967 Sum_probs=86.2
Q ss_pred CCCC---cCCCCchHHHHHHHHHhcccccccccccccccccccCCCChHHHHHHHhhhccCCcHHHHHHHHHHHHhhhhh
Q psy10019 252 KTPK---IEDYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKADADKNDKAVKDLVMLLFETALLS 328 (388)
Q Consensus 252 ~sP~---v~~~~~s~~Merimka~~~~~~~~~~~~~~kkiLEINp~Hpli~~L~~~~~~~~~~~~~~~~a~lL~d~All~ 328 (388)
+||+ ++++|||++|||||++|++.+..+++++.++|||||||+||||++|..+...+.+++.++++|++|||||+|+
T Consensus 320 ~sP~~lv~~e~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~~~~~l~~lLyd~AlL~ 399 (444)
T 3hjc_A 320 TSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLT 399 (444)
T ss_dssp SSSEEEEBCSSSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Confidence 4895 4899999999999999997544444577889999999999999999988777777788999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhccCCCCCC
Q psy10019 329 SGFGLEDPQVHAARIHRMIKLGLGIDDDD 357 (388)
Q Consensus 329 ~G~~l~Dp~~f~~ri~~ll~~~l~~~~~~ 357 (388)
+|+.++||+.|++||++||.++||+++++
T Consensus 400 ~G~~ledp~~f~~ri~~ll~~~l~~~~~~ 428 (444)
T 3hjc_A 400 SGFQLEDPTGYAERINRMIKLGLSLDEEE 428 (444)
T ss_dssp HTCCCSCHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCcccHHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999874
No 18
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.5e-22 Score=202.35 Aligned_cols=101 Identities=54% Similarity=0.914 Sum_probs=88.0
Q ss_pred CCCC---cCCCCchHHHHHHHHHhcccccccccccccccccccCCCChHHHHHHHhhhcc-CCcHHHHHHHHHHHHhhhh
Q psy10019 252 KTPK---IEDYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKADAD-KNDKAVKDLVMLLFETALL 327 (388)
Q Consensus 252 ~sP~---v~~~~~s~~Merimka~~~~~~~~~~~~~~kkiLEINp~Hpli~~L~~~~~~~-~~~~~~~~~a~lL~d~All 327 (388)
+||+ ++++|||++|+|||++|++++..+++++.++|+|||||+||||++|+.+...+ .+++.++++|++|||||+|
T Consensus 301 ~sP~~lv~~~~~~s~~mer~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~~Lyd~AlL 380 (405)
T 2cge_A 301 DAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALL 380 (405)
T ss_dssp SSSEEEEECSSSCCHHHHHHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeccccccHHHHHHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHH
Confidence 4996 38999999999999999876555445677899999999999999998765544 4567799999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHHhccC
Q psy10019 328 SSGFGLEDPQVHAARIHRMIKLGLG 352 (388)
Q Consensus 328 ~~G~~l~Dp~~f~~ri~~ll~~~l~ 352 (388)
++|+.++||+.|++|||+||.++||
T Consensus 381 ~~G~~~~dp~~f~~r~~~ll~~~l~ 405 (405)
T 2cge_A 381 TSGFSLDEPTSFASRINRLISLGLN 405 (405)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred hCCCCcccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998775
No 19
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.77 E-value=3.5e-18 Score=168.58 Aligned_cols=168 Identities=23% Similarity=0.316 Sum_probs=118.6
Q ss_pred HHHHHH-HhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHH
Q psy10019 32 LMSLII-NTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKE-SRTLTIIDSGIGMTKADLVNN 109 (388)
Q Consensus 32 ll~lL~-~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~V~DNG~GMs~edl~~~ 109 (388)
+..+|+ ...+.++..+|+|||+||+||++. .|.|.+..+ ...|+|.|||+||+.+++...
T Consensus 12 ~~~~I~agevi~~~~~~v~ELi~NaidA~a~------------------~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~ 73 (333)
T 1b63_A 12 LANQIAAGEVVERPASVVKELVENSLDAGAT------------------RIDIDIERGGAKLIRIRDNGCGIKKDELALA 73 (333)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHTTCS------------------EEEEEEEGGGTSEEEEEECSCCCCGGGHHHH
T ss_pred HHHHHhcCCchhCHHHHHHHHHHHHHHCCCC------------------eEEEEEEeCCceEEEEEEcCCCcCHHHHHHh
Confidence 445554 556779999999999999999862 444444433 368999999999999999999
Q ss_pred HHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCC-eeEEEEEecCC-ceeeecCCCCCCCCCc
Q psy10019 110 LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDD-EQYIWESSAGG-SFTIKPDHGEQLGRGT 187 (388)
Q Consensus 110 l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~-~~~~w~~~~~~-~~~i~~~~~~~~~~GT 187 (388)
|.++++|....+. .+ .....+|.+|+|++|+++++ +++|+|++.+. .+|.|...++. .+.+.+ ....+||
T Consensus 74 ~~~~~tsK~~~~~-d~---~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~GT 145 (333)
T 1b63_A 74 LARHATSKIASLD-DL---EAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKP---AAHPVGT 145 (333)
T ss_dssp HSTTCCSSCCSHH-HH---HTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEE---ECCCSEE
T ss_pred hhcccccCccccc-hh---hhccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeec---ccCCCCC
Confidence 9888877432211 11 12356899999999999998 79999998764 47777666544 344443 2457999
Q ss_pred EEEEE------------EeeCccccccHHHHHHHHHHhcccCC-cceEEeeeee
Q psy10019 188 KMVLY------------IKEDQAEYLEEKKIKEIVKKHSQFIG-YPIKLLVEKE 228 (388)
Q Consensus 188 ~I~l~------------Lk~~~~e~~~~~~i~~~i~kys~~l~-~PI~i~~~~~ 228 (388)
+|++. ++....+| .+|.+++++|+-.-+ ..+.+..++.
T Consensus 146 ~V~v~~Lf~n~P~r~kflk~~~~e~---~~i~~~~~~~al~~p~v~~~l~~ng~ 196 (333)
T 1b63_A 146 TLEVLDLFYNTPARRKFLRTEKTEF---NHIDEIIRRIALARFDVTINLSHNGK 196 (333)
T ss_dssp EEEEESTTTTCHHHHHTCCCHHHHH---HHHHHHHHHHHHHCTTCEEEEEETTE
T ss_pred EEEEecccccchhhhhhhccHHHHH---HHHHHHHHHHhccCCCcEEEEEECCE
Confidence 99997 33322233 789999999986432 3455544433
No 20
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.70 E-value=3.4e-17 Score=163.41 Aligned_cols=174 Identities=16% Similarity=0.159 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCC-----CchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcC-CCCEEEEEeCCCCCC
Q psy10019 29 IAQLMSLIINTFYS-----NKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDK-ESRTLTIIDSGIGMT 102 (388)
Q Consensus 29 ~~~ll~lL~~~LYs-----~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~V~DNG~GMs 102 (388)
++.|-+.+++.+++ ++..+|+|||+||+||++. .|.|.+.. +...|+|.|||+||+
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~------------------~I~I~i~~~~~~~I~V~DnG~Gi~ 76 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGAT------------------NIDLKLKDYGVDLIEVSDNGCGVE 76 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTCS------------------EEEEEEEGGGTSEEEEEECSCCCC
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCC------------------EEEEEEEeCCcEEEEEEECCCCcC
Confidence 34444555555555 4588999999999999752 34444432 346899999999999
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCC-eeEEEEEecCCceeeecCCCC
Q psy10019 103 KADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDD-EQYIWESSAGGSFTIKPDHGE 181 (388)
Q Consensus 103 ~edl~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~-~~~~w~~~~~~~~~i~~~~~~ 181 (388)
.+++...|..+++|....+ .+.......|.+|+|++|+++++ +++|+|++.+. .+|.|...+++.+.... ..
T Consensus 77 ~~~l~~~f~~~~tsK~~~~----~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~--~~ 149 (365)
T 1h7s_A 77 EENFEGLTLKHHTSKIQEF----ADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKT--PY 149 (365)
T ss_dssp GGGSGGGGC--------------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEE--EC
T ss_pred HHHHHHHhhhccccccccc----cchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeec--cc
Confidence 9999888888877632210 01111345799999999999999 99999998764 48999887555543322 13
Q ss_pred CCCCCcEEEEE-EeeCc---c-cc-----ccHHHHHHHHHHhcccCC-cceEEeeee
Q psy10019 182 QLGRGTKMVLY-IKEDQ---A-EY-----LEEKKIKEIVKKHSQFIG-YPIKLLVEK 227 (388)
Q Consensus 182 ~~~~GT~I~l~-Lk~~~---~-e~-----~~~~~i~~~i~kys~~l~-~PI~i~~~~ 227 (388)
...+||+|++. |.... . .| .+..+|.+++++|+-+.+ +.+.+..++
T Consensus 150 ~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~ 206 (365)
T 1h7s_A 150 PRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQL 206 (365)
T ss_dssp CCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred CCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecC
Confidence 45789999997 32110 0 02 134789999999987654 455555443
No 21
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.1e-17 Score=164.85 Aligned_cols=164 Identities=19% Similarity=0.188 Sum_probs=112.6
Q ss_pred HHHHH-HhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHH
Q psy10019 33 MSLII-NTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD-KESRTLTIIDSGIGMTKADLVNNL 110 (388)
Q Consensus 33 l~lL~-~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~V~DNG~GMs~edl~~~l 110 (388)
+..|+ .....++..+|+|||+||+||++. .|.|.+. .+...|+|.|||+||+.+++...+
T Consensus 14 ~~~I~agevi~~~~~vv~eLv~NaiDA~a~------------------~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~ 75 (367)
T 3h4l_A 14 VHRITSGQVITDLTTAVKELVDNSIDANAN------------------QIEIIFKDYGLESIECSDNGDGIDPSNYEFLA 75 (367)
T ss_dssp THHHHHHHHCCSHHHHHHHHHHHHHHTTCS------------------EEEEEEETTTTSEEEEEECSCCCCGGGTTTTT
T ss_pred HHHhcCCCcccCHHHHHHHHHHHHHHCCCC------------------EEEEEEEeCCEEEEEEEECCCCcChhHhccce
Confidence 34454 556678889999999999999762 3444443 334689999999999999997666
Q ss_pred HHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCceeeecCCCCCCCCCcEEE
Q psy10019 111 GTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLGRGTKMV 190 (388)
Q Consensus 111 ~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~~i~~~~~~~~~~GT~I~ 190 (388)
...++|....+ .+.......|.+|.|++|+++++ +++|+|++.+..+|.|...+++.+.... .....+||+|+
T Consensus 76 ~~~~tsK~~~~----~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~--~~~~~~GTtV~ 148 (367)
T 3h4l_A 76 LKHYTSKIAKF----QDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT--TTSRNKGTTVL 148 (367)
T ss_dssp CCEEC-------------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE--EECCSSEEEEE
T ss_pred eccccCcCCch----hhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec--cccCCCCeEEE
Confidence 55555533221 11122356799999999999999 6999999877668999987555443221 13457999999
Q ss_pred EE-------------EeeCccccccHHHHHHHHHHhcccCC-cceEEe
Q psy10019 191 LY-------------IKEDQAEYLEEKKIKEIVKKHSQFIG-YPIKLL 224 (388)
Q Consensus 191 l~-------------Lk~~~~e~~~~~~i~~~i~kys~~l~-~PI~i~ 224 (388)
+. ++....+| .+|.+++++|+-.-+ +-+.+.
T Consensus 149 v~~LF~n~P~R~k~flk~~~~e~---~~i~~~l~~~Al~~p~v~~~l~ 193 (367)
T 3h4l_A 149 VSQLFHNLPVRQKEFSKTFKRQF---TKCLTVIQGYAIINAAIKFSVW 193 (367)
T ss_dssp EESTTTTCHHHHHHHHTTHHHHH---HHHHHHHHHHHHHCTTCEEEEE
T ss_pred EchhhccCchhhhhhccchHHHH---HHHHHHHHHHHhhCCCeEEEEE
Confidence 93 44444343 789999999986543 345554
No 22
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.5e-16 Score=155.86 Aligned_cols=168 Identities=27% Similarity=0.285 Sum_probs=113.6
Q ss_pred HHHHHH-HhcCCCchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHH
Q psy10019 32 LMSLII-NTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKE-SRTLTIIDSGIGMTKADLVNN 109 (388)
Q Consensus 32 ll~lL~-~~LYs~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~V~DNG~GMs~edl~~~ 109 (388)
++..|+ .....++..+|.|||+||+||.+. .|.|.++.+ ...|+|.|||+||+.+++...
T Consensus 16 ~~~~Iaagevi~~~~~vv~eLv~NAidA~a~------------------~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~ 77 (348)
T 3na3_A 16 VVNRIAAGEVIQRPANAIKEMIENCLDAKST------------------SIQVIVKEGGLKLIQIQDNGTGIRKEDLDIV 77 (348)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTTCS------------------EEEEEEEGGGTSEEEEEECSCCCCGGGGGTT
T ss_pred HHHhhcccCcccCHHHHHHHHHHHHHHcCCC------------------EEEEEEEeCCEEEEEEEECCcCcChHHhhhh
Confidence 455665 556678899999999999999752 344444433 356999999999999999776
Q ss_pred HHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCC-eeEEEEEecCCce-eeecCCCCCCCCCc
Q psy10019 110 LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDD-EQYIWESSAGGSF-TIKPDHGEQLGRGT 187 (388)
Q Consensus 110 l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~-~~~~w~~~~~~~~-~i~~~~~~~~~~GT 187 (388)
+...++|....+- . .......|.+|.|+.|+..++ +++|+|++.+. .+|.|...++... .+.+ ....+||
T Consensus 78 ~~~~~tsK~~~~~-d---l~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~---~~~~~GT 149 (348)
T 3na3_A 78 CERFTTSKLQSFE-D---LASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKP---CAGNQGT 149 (348)
T ss_dssp TSTTCCSSCCCC-------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEE---ECCCSEE
T ss_pred hccccccccCcch-h---hhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeE---ecCCCCc
Confidence 6555555322210 0 111356799999999999998 79999998764 5888888754322 2333 2457899
Q ss_pred EEEEE------------EeeCccccccHHHHHHHHHHhcccC-CcceEEeeeee
Q psy10019 188 KMVLY------------IKEDQAEYLEEKKIKEIVKKHSQFI-GYPIKLLVEKE 228 (388)
Q Consensus 188 ~I~l~------------Lk~~~~e~~~~~~i~~~i~kys~~l-~~PI~i~~~~~ 228 (388)
+|++. |+....+ ..+|.+++++|+-.- .+-+.+..++.
T Consensus 150 tV~v~~LF~n~P~R~k~lk~~~~e---~~~i~~~l~~~Al~~p~v~f~l~~~g~ 200 (348)
T 3na3_A 150 QITVEDLFYNIATRRKALKNPSEE---YGKILEVVGRYSVHNAGISFSVKKQGE 200 (348)
T ss_dssp EEEEESTTTTCHHHHHTSCCHHHH---HHHHHHHHHHHHHHCTTCEEEEEETTC
T ss_pred EEEECcccccCchhhhhccccHHH---HHHHHHHHHHHHhhCCCeEEEEEECCE
Confidence 99994 4544333 378999999998653 34555555443
No 23
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.43 E-value=6.6e-13 Score=122.01 Aligned_cols=161 Identities=19% Similarity=0.261 Sum_probs=93.4
Q ss_pred chHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHhhc
Q psy10019 44 KEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------LVNNLGTIAK 115 (388)
Q Consensus 44 ~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l~~~l~~Ig~ 115 (388)
+..+|+|||.||+||... +....|.|.++.+ ..|+|.|||.||+.++ +...++..-.
T Consensus 18 ~~~~v~Elv~NsiDa~~~--------------g~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~ha 82 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHA 82 (201)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--
T ss_pred hhhhhHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeeecc
Confidence 478999999999999652 0123666666544 4899999999999988 3333443333
Q ss_pred cCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCc-eeeecCCCC-CCCCCcEEEEEE
Q psy10019 116 SGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGS-FTIKPDHGE-QLGRGTKMVLYI 193 (388)
Q Consensus 116 S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~-~~i~~~~~~-~~~~GT~I~l~L 193 (388)
++| |... ......|..|+|+.|+..++++++|+|+..+ ..|.....++.. ..+...... ....||+|++.
T Consensus 83 tsK--~~~~----~~~~s~GfrGeglssinalS~~l~v~t~~~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~- 154 (201)
T 3fv5_A 83 GGK--FSNK----NYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW- 154 (201)
T ss_dssp -------------------------CHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE-
T ss_pred ccC--cCCC----cccccCcccceecchhhcccceEEEEEEecC-ceEEEEEeCCEEcccceecccCCCCCCCeEEEEE-
Confidence 333 3211 1123589999999999999999999999754 345544443321 122211111 25689999995
Q ss_pred eeCcccc----ccHHHHHHHHHHhcccC-CcceEEeeeee
Q psy10019 194 KEDQAEY----LEEKKIKEIVKKHSQFI-GYPIKLLVEKE 228 (388)
Q Consensus 194 k~~~~e~----~~~~~i~~~i~kys~~l-~~PI~i~~~~~ 228 (388)
++...| ++..+|.+.+++|+-.. .+.|.++.++.
T Consensus 155 -Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~ 193 (201)
T 3fv5_A 155 -PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN 193 (201)
T ss_dssp -ECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTT
T ss_pred -ECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 222222 46689999999998443 35677766553
No 24
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.25 E-value=1.8e-11 Score=125.76 Aligned_cols=161 Identities=19% Similarity=0.223 Sum_probs=104.6
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhH
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDK---ESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAF 121 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f 121 (388)
..+|+|||+||+||+.... ..+.+.|.+..+. +...|+|.|||+||+.+++...|..+..+++.
T Consensus 34 ~qvl~nLv~NAida~~~gg-----------~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 100 (471)
T 1mu5_A 34 YQTVRELIENSLDATDVHG-----------ILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 100 (471)
T ss_dssp HHHHHHHHHHHHHTTGGGT-----------CCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC--
T ss_pred HHHHHHHHHHHHHHhhcCC-----------CceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc--
Confidence 3589999999999986310 0113455554432 33579999999999999998877665333321
Q ss_pred HHHHhcCCCCccccccchhhhhhhhccCe-----EEEEeecCCCe-eEEEEEe------cCCceeeecCCCCCCCCCcEE
Q psy10019 122 MEALQAGADISMIGQFGVGFYSAYLVADK-----VTVHSKHNDDE-QYIWESS------AGGSFTIKPDHGEQLGRGTKM 189 (388)
Q Consensus 122 ~~~~~~~~~~~~IG~FGIGf~S~F~v~d~-----v~V~Sk~~~~~-~~~w~~~------~~~~~~i~~~~~~~~~~GT~I 189 (388)
......|.+|+|++++..+++. +.|.|+..++. ++.|... ++..+...+.......+||+|
T Consensus 101 -------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V 173 (471)
T 1mu5_A 101 -------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSV 173 (471)
T ss_dssp -------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEE
T ss_pred -------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEE
Confidence 1124568899999999988775 99999876543 5555432 111233332211245789999
Q ss_pred EEEEeeCccccccHHHHHHHHHHhccc-CCcceEEeeee
Q psy10019 190 VLYIKEDQAEYLEEKKIKEIVKKHSQF-IGYPIKLLVEK 227 (388)
Q Consensus 190 ~l~Lk~~~~e~~~~~~i~~~i~kys~~-l~~PI~i~~~~ 227 (388)
++.+..++.++ ..+|.+++++|+-. ..+-|.+..++
T Consensus 174 ~v~l~~~~~e~--~~~I~~~l~~~al~~p~v~i~l~~~~ 210 (471)
T 1mu5_A 174 AISIPGDWPKA--KSRIYEYIKRTYIITPYAEFIFKDPE 210 (471)
T ss_dssp EEEEECCHHHH--HHHHHHHHHHHHHHCTTCEEEEECTT
T ss_pred EEEEcCCcchH--HHHHHHHHHHHHhHCCCeEEEEEECC
Confidence 99988764332 26899999998733 23455555443
No 25
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.21 E-value=3.5e-11 Score=125.26 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=106.1
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhH
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDK---ESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAF 121 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f 121 (388)
..+|+|||+||+||+.... ..+.+.|.+..+. +...|+|.|||+||+.+++...|..+.++++.
T Consensus 33 ~qvl~NLV~NAida~~~gg-----------~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 99 (530)
T 2zbk_B 33 YQTVRELIENSLDATDVHG-----------ILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 99 (530)
T ss_dssp HHHHHHHHHHHHTTTTTTT-----------CCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC--
T ss_pred HHHHHHHHHHHHHHHhccC-----------CCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc--
Confidence 3589999999999986310 0124666665543 33579999999999999998777665333321
Q ss_pred HHHHhcCCCCccccccchhhhhhhhccC-----eEEEEeecCCCe-eEEEEE--e----cCCceeeecCCCCCCCCCcEE
Q psy10019 122 MEALQAGADISMIGQFGVGFYSAYLVAD-----KVTVHSKHNDDE-QYIWES--S----AGGSFTIKPDHGEQLGRGTKM 189 (388)
Q Consensus 122 ~~~~~~~~~~~~IG~FGIGf~S~F~v~d-----~v~V~Sk~~~~~-~~~w~~--~----~~~~~~i~~~~~~~~~~GT~I 189 (388)
......|.+|+|++++..+++ .+.|.|+..++. ++.|.. . ++......+.......+||+|
T Consensus 100 -------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V 172 (530)
T 2zbk_B 100 -------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSV 172 (530)
T ss_dssp -------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEE
T ss_pred -------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEE
Confidence 112456899999999988876 699999876543 555542 2 111222222211235789999
Q ss_pred EEEEeeCccccccHHHHHHHHHHhccc-CCcceEEeeee
Q psy10019 190 VLYIKEDQAEYLEEKKIKEIVKKHSQF-IGYPIKLLVEK 227 (388)
Q Consensus 190 ~l~Lk~~~~e~~~~~~i~~~i~kys~~-l~~PI~i~~~~ 227 (388)
++.++.++.++ ..++.+++++|+-. ..+-|.+..++
T Consensus 173 ~v~l~~~~~e~--~~~i~~~l~~~Al~~p~v~~~l~~~~ 209 (530)
T 2zbk_B 173 AISIPGDWPKA--KSRIYEYIKRTYIITPYAEFIFKDPE 209 (530)
T ss_dssp EEEEECCHHHH--HHHHHHHHHHHHHHCTTCCEEEECTT
T ss_pred EEEeccchhhH--HHHHHHHHHHHHHHCCCcEEEEEECC
Confidence 99998765432 26899999998753 34566666543
No 26
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.17 E-value=8.1e-11 Score=118.29 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=103.1
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHH--------HHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVN--------NLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~--------~l~~Ig~S 116 (388)
...|+|||.||+|+..+ + ....|.|.++.+ ..|+|.|||.||+.+++.. .|..+-++
T Consensus 34 ~~~v~Elv~N~iD~a~~--~------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 34 HHLFKEILDNAVDEALA--G------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--T------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred HHHHHHHHHHHHHHhhh--C------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 46899999999999742 1 123666666544 4899999999999998743 45433333
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCc-eeeecCCCCC-CCCCcEEEEEEe
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGS-FTIKPDHGEQ-LGRGTKMVLYIK 194 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~-~~i~~~~~~~-~~~GT~I~l~Lk 194 (388)
++ |. ........|..|+|+.++..+++.++|+|+..+ ..|.+....+.. ..+.+..... ..+||+|++.
T Consensus 99 ~k--f~----~~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~-- 169 (390)
T 1kij_A 99 GK--FE----QGAYKVSGGLHGVGASVVNALSEWTVVEVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFK-- 169 (390)
T ss_dssp SG--GG----GSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEE--
T ss_pred cc--cc----CccccccCCCCCcceeeecccccceEEEEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEEEE--
Confidence 32 21 111123568999999999999999999999654 455555544321 2233221111 5689999996
Q ss_pred eCcccc----ccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 195 EDQAEY----LEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 195 ~~~~e~----~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
++...| ++...|.+.++.++-.- .+-|.++.++
T Consensus 170 Pd~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~ 207 (390)
T 1kij_A 170 PDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQ 207 (390)
T ss_dssp ECHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGG
T ss_pred EChHHhCCccccHHHHHHHHHHhcCcCCCcEEEEEeCC
Confidence 222222 45688999999987332 4566666655
No 27
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.14 E-value=3.4e-10 Score=113.75 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=109.1
Q ss_pred HhcC-C--CchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------H
Q psy10019 38 NTFY-S--NKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------L 106 (388)
Q Consensus 38 ~~LY-s--~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l 106 (388)
-.+| + ++...|.|||.||+||... +.-..|.|.++.++ .|+|.|||.||+.++ +
T Consensus 23 PgmYiGs~~~~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~~ 87 (390)
T 1s16_A 23 PGMYTDTTRPNHLGQEVIDNSVDEALA--------------GHAKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPAV 87 (390)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEECSSCCCCSBCTTTCSBHH
T ss_pred CceeecCCcHHHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecCC-EEEEEECCCCcCcccccccCcchh
Confidence 4567 3 2378999999999999631 11246777776554 899999999999988 6
Q ss_pred HHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCc-eeeecCCCCC-CC
Q psy10019 107 VNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGS-FTIKPDHGEQ-LG 184 (388)
Q Consensus 107 ~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~-~~i~~~~~~~-~~ 184 (388)
...|.++-.++| |. ...-....|..|+|+.++-.++..++|+|+..+ ..|......+.. -.+....... ..
T Consensus 88 e~v~~~lhagsK--f~----~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~~~~~g~~~~~~ 160 (390)
T 1s16_A 88 ELILCRLHAGGK--FS----NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRN 160 (390)
T ss_dssp HHHHHCTTEESC--SS----SSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTC
T ss_pred hheeeeecccCC--cC----CCcccccCCccccchHHHHHhhcccEEEEEECC-cEEEEEEeCCcccccceecccccCCC
Confidence 666776444443 21 111123578899999999999999999999644 556555554321 1122211111 26
Q ss_pred CCcEEEEEEeeCcccc----ccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 185 RGTKMVLYIKEDQAEY----LEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 185 ~GT~I~l~Lk~~~~e~----~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
.||+|++. ++...| ++...|.+.++.++-.. ..-|.++.++
T Consensus 161 ~GT~V~f~--Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~ 206 (390)
T 1s16_A 161 TGTSVHFW--PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 206 (390)
T ss_dssp CEEEEEEE--ECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred CceEEEEE--ECccccCcccccHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 89999986 222222 46688999999987543 4667777665
No 28
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.10 E-value=2.8e-10 Score=105.84 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=96.0
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL--------VNNLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl--------~~~l~~Ig~S 116 (388)
...|+|||.||+|+... +.-..|.|.++.+ ..|+|.|||.||+.++. +-.|+.+-.+
T Consensus 37 ~~lv~ElvdNsiDea~~--------------g~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag 101 (220)
T 4duh_A 37 HHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 (220)
T ss_dssp HHHHHHHHHHHHHHHHH--------------SCCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeecccC
Confidence 68999999999999652 1123666666654 58999999999999863 3345444444
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCc-eeeecCCCCCCCCCcEEEEEEee
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGS-FTIKPDHGEQLGRGTKMVLYIKE 195 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~GT~I~l~Lk~ 195 (388)
+| |- ...-...-|..|+|+.++-.++.+++|+++..+ ..|......+.. ..+... +.....||+|++.-..
T Consensus 102 ~K--fd----~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~~-g~~~~~GT~V~F~Pd~ 173 (220)
T 4duh_A 102 GK--FD----DNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVT-GETEKTGTMVRFWPSL 173 (220)
T ss_dssp SC--CC----TTC--------CCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSSCEEE-EECSCCEEEEEEEECT
T ss_pred CC--cC----CCccccccCccceecchhcccccceEEEEEECC-EEEEEEecCCcCcCCceec-cccCCCCcEEEEEECH
Confidence 43 21 111125679999999999999999999998755 444444443211 111111 1235789999986222
Q ss_pred Cccc---cccHHHHHHHHHHhcccC--CcceEEeeee
Q psy10019 196 DQAE---YLEEKKIKEIVKKHSQFI--GYPIKLLVEK 227 (388)
Q Consensus 196 ~~~e---~~~~~~i~~~i~kys~~l--~~PI~i~~~~ 227 (388)
.... -++...|.+.++.+| |+ ..-|.++.++
T Consensus 174 ~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~der 209 (220)
T 4duh_A 174 ETFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRDKR 209 (220)
T ss_dssp TTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred HHhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEccC
Confidence 1110 145678888999887 44 3566666554
No 29
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.09 E-value=8.8e-10 Score=110.74 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=105.2
Q ss_pred CchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHhh
Q psy10019 43 NKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------LVNNLGTIA 114 (388)
Q Consensus 43 ~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l~~~l~~Ig 114 (388)
.....|.|||.||+||+.. +.-..|.|.++.++ .|+|.|||.||+.++ ++-.|+.+-
T Consensus 34 gl~~lv~ElvdNsiDea~~--------------g~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lh 98 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 98 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------TCCCEEEEEECTTS-CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTT
T ss_pred CHHHHHHHHHHhHHHHHhc--------------CCCCEEEEEEeCCC-EEEEEECCCCcccCcccccCcchHHHhheecc
Confidence 3467999999999999642 11236777776554 999999999999988 544666454
Q ss_pred ccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCc-eeeecCCCCCCCCCcEEEEEE
Q psy10019 115 KSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGS-FTIKPDHGEQLGRGTKMVLYI 193 (388)
Q Consensus 115 ~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~GT~I~l~L 193 (388)
+++| | .+..-...-|..|+|+.++-.++..++|+|+..+ ..|......+.. -.+... +.....||+|++.-
T Consensus 99 agsK--f----~~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~l~~~-~~~~~~GT~V~f~P 170 (391)
T 1ei1_A 99 AGGK--F----DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVT-GETEKTGTMVRFWP 170 (391)
T ss_dssp EESC--S----SSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEE-EECSCCEEEEEEEE
T ss_pred ccCC--c----CCCcccccCCccccchHHHHHhcCeEEEEEEeCC-cEEEEEEcCCcccccceec-cCcCCCccEEEEEE
Confidence 4444 2 1111123678999999999999999999998654 555555544311 011100 11246899999862
Q ss_pred eeCcc---ccccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 194 KEDQA---EYLEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 194 k~~~~---e~~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
..... .-++...|.+.++.++-.. ..-|.++.++
T Consensus 171 d~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~ 208 (391)
T 1ei1_A 171 SLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKR 208 (391)
T ss_dssp CTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred ChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCC
Confidence 11110 1135688999999987443 4667777665
No 30
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=99.07 E-value=8.9e-10 Score=110.93 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=102.1
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHhhcc
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------LVNNLGTIAKS 116 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l~~~l~~Ig~S 116 (388)
...|.|||.||+|++... ++-..|.|.++.++..|+|.|||.||+.++ ++-.|+.+-.+
T Consensus 54 ~~lv~EivdNsiDe~~~~-------------g~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhag 120 (400)
T 1zxm_A 54 YKIFDEILVNAADNKQRD-------------PKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 120 (400)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------TTCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEE
T ss_pred HHHHHHHHhhHHhHHhhc-------------CCCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeeccc
Confidence 468999999999997321 112366777666557999999999999887 55566645444
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecC-CCeeEEEEEecCCc-eeeecCCCCCCCCCcEEEEEEe
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHN-DDEQYIWESSAGGS-FTIKPDHGEQLGRGTKMVLYIK 194 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~-~~~~~~w~~~~~~~-~~i~~~~~~~~~~GT~I~l~Lk 194 (388)
+| |.. ..-....|..|+|..++-.++.+++|+|+.. +...|......+.. .............||+|++.-.
T Consensus 121 sK--f~~----~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~Pd 194 (400)
T 1zxm_A 121 SN--YDD----DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPD 194 (400)
T ss_dssp SC--CCG----GGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSCCEEEEEEEEC
T ss_pred CC--CCC----CcccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceeccCCCCCccEEEEEEC
Confidence 44 211 1112367999999999999999999999874 34555555544321 1111111122458999998732
Q ss_pred eCc---cccccHHH---HHHHHHHhcccC-CcceEEeeee
Q psy10019 195 EDQ---AEYLEEKK---IKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 195 ~~~---~e~~~~~~---i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
... .+ ++.+. |.+.++.++-.. ..-|.++.++
T Consensus 195 ~~iF~~~e-f~~~~~~~l~~rlrelA~lnpgv~i~l~der 233 (400)
T 1zxm_A 195 LSKFKMQS-LDKDIVALMVRRAYDIAGSTKDVKVFLNGNK 233 (400)
T ss_dssp GGGGTCSS-CCHHHHHHHHHHHHHHHHHSSSCEEEETTEE
T ss_pred hHHhCcee-ecHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Confidence 221 11 24444 667777776332 3556665544
No 31
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.06 E-value=1.2e-09 Score=101.89 Aligned_cols=159 Identities=18% Similarity=0.239 Sum_probs=98.8
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH-------HHHHHHHhhccC
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD-------LVNNLGTIAKSG 117 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed-------l~~~l~~Ig~S~ 117 (388)
...++|||.||+|+... +....|.|.++.+ ..|+|.|||.||+.++ +.-.|+.+-.++
T Consensus 42 ~~~v~Eiv~NaiD~~~~--------------g~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~ 106 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS--------------GFGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGG 106 (226)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC---
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecccC
Confidence 46899999999999642 1123667776654 4899999999999988 654565554554
Q ss_pred chhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecC-C---cee-eecCCCCCCCCCcEEEEE
Q psy10019 118 TKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAG-G---SFT-IKPDHGEQLGRGTKMVLY 192 (388)
Q Consensus 118 k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~-~---~~~-i~~~~~~~~~~GT~I~l~ 192 (388)
| |-. ..-...-|..|+|..++-.++..++|+++..+ ..|......+ . ... +.+ ......||+|++.
T Consensus 107 K--fd~----~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g-~~~~q~f~~Gg~~~~~l~~ig~--~~~~~~GT~V~F~ 177 (226)
T 4emv_A 107 K--FGQ----GGYKTSGGLHGVGSSVVNALSSWLEVEITRDG-AVYKQRFENGGKPVTTLKKIGT--ALKSKTGTKVTFM 177 (226)
T ss_dssp -----------------CGGGCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTTEESSCSEEEEE--CCTTCCEEEEEEE
T ss_pred c--cCc----cceEeccccccccchhhhhcccceEEEEEeCC-cEEEEEECCCCEEcCCceEecc--cCCCCCCeEEEEE
Confidence 4 321 11135679999999999999999999998754 4454444433 1 111 111 1125789999986
Q ss_pred EeeCc--cccccHHHHHHHHHHhcccC--CcceEEeeeee
Q psy10019 193 IKEDQ--AEYLEEKKIKEIVKKHSQFI--GYPIKLLVEKE 228 (388)
Q Consensus 193 Lk~~~--~e~~~~~~i~~~i~kys~~l--~~PI~i~~~~~ 228 (388)
-.... ..-++.+.|.+.++.+| || ..-|.++.++.
T Consensus 178 PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~der~ 216 (226)
T 4emv_A 178 PDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTDKRT 216 (226)
T ss_dssp ECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEETTT
T ss_pred ECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEecCC
Confidence 22211 01146688888998887 44 45677766553
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.00 E-value=3e-10 Score=120.09 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=100.2
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcC-CCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHH
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDK-ESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFME 123 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~ 123 (388)
..+|+|||+||+||+.... ..+.+.|.+..+. +...|+|.|||.||+.+++...|..+.++++ |.
T Consensus 39 ~~Vl~ELV~NAIDa~~~~g-----------~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atsk--f~- 104 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEEAG-----------ILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSR--FH- 104 (621)
T ss_dssp HHHHHHHHHHHHHHHTTTS-----------CSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC----CC-
T ss_pred HHHHHHHHHHHHHHHhhcC-----------CCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCc--cc-
Confidence 4689999999999986311 0113444444333 2257999999999999999877655433322 21
Q ss_pred HHhcCCCCccccccchhhhhhhhccCe-----EEEEeecCCC-eeEEEEE----e-cCCceeeecCCCCCCCCCcEEEEE
Q psy10019 124 ALQAGADISMIGQFGVGFYSAYLVADK-----VTVHSKHNDD-EQYIWES----S-AGGSFTIKPDHGEQLGRGTKMVLY 192 (388)
Q Consensus 124 ~~~~~~~~~~IG~FGIGf~S~F~v~d~-----v~V~Sk~~~~-~~~~w~~----~-~~~~~~i~~~~~~~~~~GT~I~l~ 192 (388)
......|..|+|+.++..+++. +.|.|+..+. .++.|.. . +.+.............+||+|++.
T Consensus 105 -----~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~ 179 (621)
T 2q2e_B 105 -----ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELE 179 (621)
T ss_dssp -----CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEE
T ss_pred -----cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEE
Confidence 0113458999999999888766 5999987653 5666664 2 222221111112345799999999
Q ss_pred EeeCccccccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 193 IKEDQAEYLEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 193 Lk~~~~e~~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
++.+..++ ....|.+++++|+-.- .+-|.+..++
T Consensus 180 f~~~~~~~-~~~~I~~~L~~lAllnpgv~I~L~d~~ 214 (621)
T 2q2e_B 180 MRAAYVKG-RRQSIYEYLKATAIVNPHARITLIDPD 214 (621)
T ss_dssp CSCCCCCC-SSSSSHHHHHHHHHHCCSCEEEECCTT
T ss_pred ecCccchH-HHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 87433220 0256788888876443 3456665543
No 33
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.98 E-value=4.5e-09 Score=104.83 Aligned_cols=154 Identities=8% Similarity=0.101 Sum_probs=95.7
Q ss_pred chHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHH
Q psy10019 44 KEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFME 123 (388)
Q Consensus 44 ~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~ 123 (388)
+...|+|||.||+||... +.-.+|.|.++.++ .|+|.|||.||+. ++ .|..++.| | |
T Consensus 31 l~~~v~ElvdNsiDe~~~--------------g~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~--v~~lhags-K--f-- 87 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARR--------------GECRDVVLEVGGDG-SIALFCTSRTVTA-EN--LVRVATGA-G--F-- 87 (369)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEEEESSCCH-HH--HHHHHTTT-T--G--
T ss_pred HHHHHHHHHhhhHhHHhh--------------CCCCEEEEEEeCCC-EEEEEECCCCcCH-hH--eeeeecCC-C--c--
Confidence 367999999999999642 11246777776554 8999999999999 44 23333333 3 2
Q ss_pred HHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCce-----eeecCC--CCCCCCCcEEEEEEeeC
Q psy10019 124 ALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSF-----TIKPDH--GEQLGRGTKMVLYIKED 196 (388)
Q Consensus 124 ~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~~-----~i~~~~--~~~~~~GT~I~l~Lk~~ 196 (388)
.........+.-| |+.++-.++.+++|+|+..+ ..|......+ .. ...+.. +.....||+|++. ++
T Consensus 88 --~~~~~~~~y~vsG-Gls~vnalSs~l~v~t~r~g-~~~~~~~~~G-~~~~~~~~~~~l~~~g~~~~~GT~V~f~--Pd 160 (369)
T 3cwv_A 88 --LGRPPGDGWGWDS-MLVVSLALSSRYQVDIWADG-RQWRVMGEHG-HPQGEGAAVTPMEPMPVSAERGVRVHFV--PD 160 (369)
T ss_dssp --GGSSCCCSTTTTS-SHHHHHHTEEEEEEEEEETT-EEEEEEEETT-EECTTCEEESSCCCCSSCCSEEEEEEEE--EC
T ss_pred --CCCcccccccccC-HHHHHHHhhceEEEEEEECC-CEEEEEEeCC-cccccccccCCceEecccCCCCCEEEEE--EC
Confidence 1100001112224 88888999999999999754 4565555543 11 022111 1224789999987 22
Q ss_pred cccc----ccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 197 QAEY----LEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 197 ~~e~----~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
...| .+...|.+.+++++-.- ..-|.++.++
T Consensus 161 ~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~ 196 (369)
T 3cwv_A 161 ATIFEVLAFDRARLSRRCNELAALAPGLRVSFADLQ 196 (369)
T ss_dssp TTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred HHHhCCccccHHHHHHHHHHHcCcCCCcEEEEEeCC
Confidence 2222 45688999999998443 4567777665
No 34
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.80 E-value=5.4e-08 Score=98.01 Aligned_cols=164 Identities=19% Similarity=0.275 Sum_probs=94.8
Q ss_pred HhcCC---CchHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------H
Q psy10019 38 NTFYS---NKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------L 106 (388)
Q Consensus 38 ~~LYs---~~~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l 106 (388)
-.+|- ++...|.|||.||+|+... ++-..|.|.++.+ ..|+|.|||.||+.+. +
T Consensus 42 PgMYiGst~~~hlv~EivdNsiDea~a--------------g~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~ 106 (408)
T 3lnu_A 42 PGMYTDTARPNHLAQEVIDNSVDEALA--------------GHAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGV 106 (408)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHT--------------TSCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHH
T ss_pred CccEECCCCcchhhHHHHHHHHHHhhc--------------CCCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcch
Confidence 34564 4578999999999999642 1123666666544 5899999999999876 3
Q ss_pred HHHHHHhhccCchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCC---cee-eecCCCCC
Q psy10019 107 VNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGG---SFT-IKPDHGEQ 182 (388)
Q Consensus 107 ~~~l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~---~~~-i~~~~~~~ 182 (388)
+-.|+.+-.+++ |-. ..-...-|..|+|..++-.++.+++|+++..+ ..|......+. ... +.+ ...
T Consensus 107 e~i~t~lhaggK--fd~----~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG-k~~~q~f~~G~~~~~l~~ig~--~~~ 177 (408)
T 3lnu_A 107 ELILTRLHAGGK--FNN----RNYTFSGGLHGVGVSVVNALSTKVELFIKREG-SEHRMEFRDGNAASKLEVVGT--VGK 177 (408)
T ss_dssp HHHHHCC--------------------------CHHHHHHTEEEEEEEEEETT-EEEEEEEETTEECSCCEEEEE--CCT
T ss_pred heEEEecccCCC--cCC----CceeecCCccccccceehhccCeEEEEEEECC-EEEEEEECCCEECCCceEecc--CcC
Confidence 334555545544 321 11124679999999999999999999998755 44444443321 111 211 122
Q ss_pred CCCCcEEEEEEeeCcccc----ccHHHHHHHHHHhcccC-CcceEEeeee
Q psy10019 183 LGRGTKMVLYIKEDQAEY----LEEKKIKEIVKKHSQFI-GYPIKLLVEK 227 (388)
Q Consensus 183 ~~~GT~I~l~Lk~~~~e~----~~~~~i~~~i~kys~~l-~~PI~i~~~~ 227 (388)
...||+|+..- +..-| ++.+.|...++.++=.. ..-|.++.++
T Consensus 178 ~~~GT~V~F~P--D~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der 225 (408)
T 3lnu_A 178 KNTGTRLRFWA--DPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHDEA 225 (408)
T ss_dssp TCCEEEEEEEE--CGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred CCCCcEEEEEE--CHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEecc
Confidence 46899999862 22222 46678888888876332 4567776654
No 35
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.69 E-value=8e-08 Score=87.87 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=85.7
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHH
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~ 124 (388)
...|+|||.||+|+... ++...|.|.++.+ ..|+|.|||.||+.+ .+..|+.... +
T Consensus 33 ~~~v~Elv~NsiD~~~a--------------g~~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~-e- 88 (198)
T 3ttz_A 33 HHLVWEIVDNSIDEALA--------------GYANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV-E- 88 (198)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TSCCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH-H-
T ss_pred HHHHHHHHHHHHhHHhc--------------CCCcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc-c-
Confidence 67999999999998531 0123566665544 499999999999986 2334433211 1
Q ss_pred HhcCCCCccccccchhhhhhhhccCeEEEEeecCCCeeEEEEEecCCc-eeeecCCCCCCCCCcEEEEEEeeCcccc---
Q psy10019 125 LQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGS-FTIKPDHGEQLGRGTKMVLYIKEDQAEY--- 200 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~GT~I~l~Lk~~~~e~--- 200 (388)
.+ |+ ..++=.++.+++|+|+..+ ..|......+.. ..+... +.....||+|++. ++..-|
T Consensus 89 --------~i--~t--~SvVNALS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~i-~~~~~~GT~V~F~--Pd~~iF~~~ 152 (198)
T 3ttz_A 89 --------VI--LT--SSVVNALSQDLEVYVHRNE-TIYHQAYKKGVPQFDLKEV-GTTDKTGTVIRFK--ADGEIFTET 152 (198)
T ss_dssp --------HH--HH--TCHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEE-EECSCCEEEEEEE--ECTTTCCSC
T ss_pred --------cc--ce--eEehhhhcCeEEEEEEECC-cEEEEEEeCCEECCCceec-cCCCCCCcEEEEE--ECHHHhccC
Confidence 11 22 3344567789999998765 345544443311 111111 1234789999986 232223
Q ss_pred --ccHHHHHHHHHHhcccCC--cceEEeeee
Q psy10019 201 --LEEKKIKEIVKKHSQFIG--YPIKLLVEK 227 (388)
Q Consensus 201 --~~~~~i~~~i~kys~~l~--~PI~i~~~~ 227 (388)
++...|.+.++.++ |+. .-|.++.++
T Consensus 153 ~~~~~~~l~~rlrelA-~ln~gv~i~l~der 182 (198)
T 3ttz_A 153 TVYNYETLQQRIRELA-FLNKGIQITLRDER 182 (198)
T ss_dssp CCCCHHHHHHHHHHHH-HHSTTCEEEEEECS
T ss_pred CccCHHHHHHHHHHHh-hcCCCCEEEEEeec
Confidence 46688999999988 443 455655544
No 36
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.55 E-value=6.4e-07 Score=90.55 Aligned_cols=161 Identities=13% Similarity=0.093 Sum_probs=98.0
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHhhccC
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD--------LVNNLGTIAKSG 117 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed--------l~~~l~~Ig~S~ 117 (388)
..+.|+|.||+|++... ++-..|.|.++.++..|+|.|||.||+.+. ++-.|+.+-++|
T Consensus 67 ~lv~EivdNaiDe~~~~-------------g~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGg 133 (418)
T 1pvg_A 67 KIFDEILVNAADNKVRD-------------PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 133 (418)
T ss_dssp HHHHHHHHHHHHHHHHC-------------TTCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEES
T ss_pred HHHHHHHhCHHHHHHhc-------------CCCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEeccc
Confidence 48999999999997421 122467777776668999999999999765 222466665665
Q ss_pred chhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeec-CCCeeEEEEEecC-Cc---eeeecCCCCCCCCCcEEEEE
Q psy10019 118 TKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKH-NDDEQYIWESSAG-GS---FTIKPDHGEQLGRGTKMVLY 192 (388)
Q Consensus 118 k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~-~~~~~~~w~~~~~-~~---~~i~~~~~~~~~~GT~I~l~ 192 (388)
|-. .+.-...-|..|+|...+=.++..++|+++. .++..|......+ +. -.+... .....||+|+..
T Consensus 134 Kfd------~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p~i~~~--~~~~tGT~V~F~ 205 (418)
T 1pvg_A 134 NYD------DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY--KKGPSYTKVTFK 205 (418)
T ss_dssp CCC------TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC--CSSCCEEEEEEE
T ss_pred ccC------CCceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCCeeccc--CCCCCceEEEEE
Confidence 421 0111245799999999999999999999986 3444454343322 11 023221 124689999976
Q ss_pred EeeCccc--cccHHH---HHHHHHHhccc-CCcceEEeeee
Q psy10019 193 IKEDQAE--YLEEKK---IKEIVKKHSQF-IGYPIKLLVEK 227 (388)
Q Consensus 193 Lk~~~~e--~~~~~~---i~~~i~kys~~-l~~PI~i~~~~ 227 (388)
-...... -++.+. |...++..+=. -..-|+++.++
T Consensus 206 PD~~iF~~~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~der 246 (418)
T 1pvg_A 206 PDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNGKS 246 (418)
T ss_dssp ECGGGGTCSSCCHHHHHHHHHHHHHHHHHSTTCEEEETTEE
T ss_pred EChHHcCCcccCHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 4333211 133444 34444444322 24567776655
No 37
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=98.07 E-value=8.3e-06 Score=69.00 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=55.1
Q ss_pred hHHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHH
Q psy10019 45 EIFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124 (388)
Q Consensus 45 ~~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~ 124 (388)
..+|.|||.||+.+.... .....+.|.+..+.+...|.|.|||.||+ ++.+.|... .+++
T Consensus 41 ~~il~~l~~Nai~h~~~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~-~~~~------ 100 (145)
T 1th8_A 41 KTVVSEAVTNAIIHGYNN-----------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPL-FTTK------ 100 (145)
T ss_dssp HHHHHHHHHHHHHTTSTT-----------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------
T ss_pred HHHHHHHHHHHHHHhcCC-----------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhccc-ccCC------
Confidence 358999999999886420 01234566666555557799999999999 554433211 1110
Q ss_pred HhcCCCCccccccchhhhhhhhccCeEEEEeecC
Q psy10019 125 LQAGADISMIGQFGVGFYSAYLVADKVTVHSKHN 158 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~ 158 (388)
...+..|+|++-+-.+++.+.+.+...
T Consensus 101 -------~~~~~~GlGL~iv~~~~~~i~~~~~~~ 127 (145)
T 1th8_A 101 -------PELERSGMGFTIMENFMDEVIVESEVN 127 (145)
T ss_dssp ----------CCCSCHHHHHHHHSSEEEEEEETT
T ss_pred -------CCCCCCcchHHHHHHHHheEEEEeCCC
Confidence 122568999999888888777666543
No 38
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.93 E-value=1.7e-05 Score=66.93 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=49.5
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+.++. ..+.|.+..+.+...|.|.|||.||+.+++...|... .+.+
T Consensus 47 ~il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~-~~~~------- 102 (152)
T 1id0_A 47 EVMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRG-QRVD------- 102 (152)
T ss_dssp HHHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCC-CCTT-------
T ss_pred HHHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccc-eecc-------
Confidence 478899999999864 1356666666666789999999999999885443221 1111
Q ss_pred hcCCCCccccccchhhhhhhhc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLV 147 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v 147 (388)
...+..|+|++.+-.+
T Consensus 103 ------~~~~g~GlGL~i~~~~ 118 (152)
T 1id0_A 103 ------TLRPGQGVGLAVAREI 118 (152)
T ss_dssp ------CCCTTCCSCHHHHHHH
T ss_pred ------CCCCCcccCHHHHHHH
Confidence 1125789999877655
No 39
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.87 E-value=2.7e-05 Score=65.73 Aligned_cols=75 Identities=13% Similarity=0.203 Sum_probs=46.6
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+.+... ..+.|.+....+...|.|.|||.||+.+++.+.|....++.+
T Consensus 49 ~il~nLl~NA~~~~~~---------------~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~------- 106 (150)
T 1ysr_A 49 LAVDNAIANAVKHGGA---------------TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST------- 106 (150)
T ss_dssp HHHHHHHHHHHHTTCC---------------SEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC-----------
T ss_pred HHHHHHHHHHHhcCCC---------------cEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCC-------
Confidence 4788999999988531 235666655555577999999999999999766543322111
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
...+..|+|++.+-.++
T Consensus 107 ------~~~~g~GlGL~i~~~~~ 123 (150)
T 1ysr_A 107 ------ASHSGSGLGLALVAQQA 123 (150)
T ss_dssp -------------CCCHHHHHHH
T ss_pred ------CCCCCCCcCHHHHHHHH
Confidence 11356799988776653
No 40
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.79 E-value=5.5e-05 Score=69.74 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=49.4
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+++... ...+.|.+..+.+...|.|.|||.||+.+.+.+.|.. ..+
T Consensus 158 ~il~nLl~NA~~~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-~~~--------- 213 (268)
T 4ew8_A 158 QTLDHLVENALRQTPP--------------GGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDR-FVG--------- 213 (268)
T ss_dssp HHHHHHHHHHHHHSCT--------------TCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTST-TCC---------
T ss_pred HHHHHHHHHHHHhCCC--------------CCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHH-Hhc---------
Confidence 4789999999988641 1345666665555567999999999999988544321 111
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
...+..|+|++.+-.+.
T Consensus 214 ------~~~~g~GlGL~i~~~~~ 230 (268)
T 4ew8_A 214 ------RDRGGPGLGLALVKALV 230 (268)
T ss_dssp ------CSSCCCTTHHHHHHHHH
T ss_pred ------CCCCCCcccHHHHHHHH
Confidence 11256899998765553
No 41
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.77 E-value=2.4e-05 Score=69.70 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=32.6
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+.+... ...|.|..... .|.|.|||.||+.+++...|....++ +
T Consensus 120 ~il~nLl~NAi~~~~~----------------~~~i~i~~~~~--~i~V~D~G~Gi~~~~~~~if~~f~~~-~------- 173 (222)
T 3jz3_A 120 LLVRNLLDNAVRYSPQ----------------GSVVDVTLNAD--NFIVRDNGPGVTPEALARIGERFYRP-P------- 173 (222)
T ss_dssp HHHHHHHHHHHHTCCT----------------TCEEEEEECSS--EEEEECSCC--------------------------
T ss_pred HHHHHHHHHHHHcCCC----------------CCeEEEEEccC--eEEEEECCCCCCHHHHHHHHhhhccC-C-------
Confidence 3778999999988641 12455555433 39999999999999987655432221 1
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
....+..|+|++.+-.++
T Consensus 174 -----~~~~~g~GlGL~i~~~i~ 191 (222)
T 3jz3_A 174 -----GQTATGSGLGLSIVQRIA 191 (222)
T ss_dssp -------------CTHHHHHHHH
T ss_pred -----CCCCCcccccHHHHHHHH
Confidence 122356899998776653
No 42
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.77 E-value=6.2e-05 Score=68.00 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=50.0
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+.++.. ...+.|.+..+.+...|.|.|||.||+.+++...|... .++
T Consensus 126 ~il~nLl~NA~~~~~~--------------~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~-~~~-------- 182 (244)
T 3d36_A 126 QCLLNVMKNAIEAMPN--------------GGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPY-FTT-------- 182 (244)
T ss_dssp HHHHHHHHHHHHTCTT--------------CEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTT-CCS--------
T ss_pred HHHHHHHHHHHHhccC--------------CCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhccc-ccC--------
Confidence 3788999999988631 12356666666556779999999999999886544322 111
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
...+..|+|++.+-.++
T Consensus 183 ------~~~~g~GlGL~i~~~i~ 199 (244)
T 3d36_A 183 ------KGVKGTGLGMMVVYRII 199 (244)
T ss_dssp ------SGGGCCSCHHHHHHHHH
T ss_pred ------CCCCCcchhHHHHHHHH
Confidence 11256799998775553
No 43
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.75 E-value=4.4e-05 Score=67.17 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=36.0
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLV 107 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~ 107 (388)
+|.+||.||+.+............ ......+.|.+..+.+...|+|.|||.||+.+++.
T Consensus 51 il~nLl~NAik~~~~~~~~~~~~~--~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 51 PLLHLLRNAIDHGIEPKEERIAKG--KPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHT--SCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccccc--CCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHh
Confidence 489999999999631000000000 00123355655555555679999999999999873
No 44
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.73 E-value=8.4e-05 Score=73.75 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=56.0
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+.|+....-.. ...+.+.|.+..+.+...|+|.|+|.||+.+++.+.|....+..... ..
T Consensus 234 ~il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~---~~ 303 (394)
T 2btz_A 234 HMLFELFKNAMRATVESHESS-------LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTP---QP 303 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC-------SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC-------
T ss_pred HHHHHHHHHHHHHhhhccccC-------CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCC---Cc
Confidence 478899999999986421000 01234666666555556799999999999999976554332221100 00
Q ss_pred hcCCCCccccccchhhhhhhhcc----CeEEEEeec
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA----DKVTVHSKH 157 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~----d~v~V~Sk~ 157 (388)
.......+.+|+|+.-|-.++ -.+.|.|..
T Consensus 304 --~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 304 --GTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp ------------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred --ccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 001234578999998765543 456666653
No 45
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.70 E-value=5.3e-05 Score=69.77 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=47.5
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|..||.||+.++.... ....+.|.+....+...|.|.|||.||+.+++.+.|....+....
T Consensus 141 ~il~NLl~NAik~~~~~~-----------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------ 203 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSKKDA-----------PDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS------ 203 (258)
T ss_dssp HHHHHHHHHHHHTCCTTC-----------TTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC--------
T ss_pred HHHHHHHHHHHhcCcCCC-----------CceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCCC------
Confidence 378899999999864200 011234444444445679999999999999886555433222110
Q ss_pred hcCCCCccccccchhhhhhhhcc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA 148 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~ 148 (388)
.....+..|+|++-|-.++
T Consensus 204 ----~~~~~~G~GLGL~i~~~iv 222 (258)
T 2c2a_A 204 ----LTYEVPGTGLGLAITKEIV 222 (258)
T ss_dssp -----------CCCTHHHHHHHH
T ss_pred ----CCCCCCCcchHHHHHHHHH
Confidence 0112346899998776553
No 46
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.68 E-value=8.9e-05 Score=73.63 Aligned_cols=100 Identities=20% Similarity=0.214 Sum_probs=59.5
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+.|+....-.. ...+.+.|.+..+.+...|.|.|+|.||+.+++.+.|....+.....- .
T Consensus 233 ~il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~---~ 302 (394)
T 2e0a_A 233 HMLFELFKNAMRATVEHQENQ-------PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPV---M 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS-------SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC-----
T ss_pred HHHHHHHHHHHHHHHhccccc-------CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCC---c
Confidence 478899999999986421000 112346666665555567999999999999999765543322211000 0
Q ss_pred hcCCCCccccccchhhhhhhhcc----CeEEEEee
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA----DKVTVHSK 156 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~----d~v~V~Sk 156 (388)
........+.+|+|+.-|-.++ -.+.|.|.
T Consensus 303 -~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~ 336 (394)
T 2e0a_A 303 -DNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSL 336 (394)
T ss_dssp -----CCCSSCSSCHHHHHHHHHHHTTCEEEEEEE
T ss_pred -CcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEec
Confidence 0001234578999998765553 34555554
No 47
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.68 E-value=5.8e-05 Score=67.49 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=31.3
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL 106 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl 106 (388)
+++||+.||+.+.. ...+.|.+..+.+...|.|.|||.||+.+.+
T Consensus 134 il~nll~Na~k~~~---------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHSQ---------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHTC---------------CSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 68899999988753 1235666666666678999999999998765
No 48
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.68 E-value=8e-05 Score=74.30 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=59.1
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+.|+....-.. ...+.+.|.+....+...|.|.|||.||+.+++.+.|....+..... .
T Consensus 246 ~il~NLl~NAik~t~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~---~- 314 (407)
T 2q8g_A 246 HMVFELFKNAMRATMEHHANR-------GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRP---R- 314 (407)
T ss_dssp HHHHHHHHHHHHHHHHHSTTT-------CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCC---C-
T ss_pred HHHHHHHHHHHHHHhhccccC-------CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCC---C-
Confidence 478999999999986421000 01234666666555556799999999999999866553322221100 0
Q ss_pred hcCCCCccccccchhhhhhhhcc----CeEEEEee
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA----DKVTVHSK 156 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~----d~v~V~Sk 156 (388)
.........+.+|+|+.-|-.++ -.+.|.|.
T Consensus 315 ~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~ 349 (407)
T 2q8g_A 315 VETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSL 349 (407)
T ss_dssp SSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEc
Confidence 00001234578999998765553 34555544
No 49
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.66 E-value=7.7e-05 Score=62.99 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=41.7
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCC----------CCEEEEEeCCCCCCHHHHHHHHHHhhc
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKE----------SRTLTIIDSGIGMTKADLVNNLGTIAK 115 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~----------~~~l~V~DNG~GMs~edl~~~l~~Ig~ 115 (388)
.++.+||.||+.++... ...+.|.+..... ...|.|.|||.||+.+++...|... .
T Consensus 51 ~il~nLl~NAik~~~~~-------------~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~-~ 116 (160)
T 1r62_A 51 QVLLNIVRNALQALGPE-------------GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPM-V 116 (160)
T ss_dssp HHHHHHHHHHHHHHGGG-------------CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC--------------
T ss_pred HHHHHHHHHHHHHhhcc-------------CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCcc-c
Confidence 47789999999987520 1234555544433 4568999999999999886554322 1
Q ss_pred cCchhHHHHHhcCCCCccccccchhhhhhhhcc----CeEEEEee
Q psy10019 116 SGTKAFMEALQAGADISMIGQFGVGFYSAYLVA----DKVTVHSK 156 (388)
Q Consensus 116 S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~----d~v~V~Sk 156 (388)
++ .-+..|+|++.+-.++ -++.|.|.
T Consensus 117 ~~---------------~~~g~GlGL~i~~~~~~~~gG~l~i~s~ 146 (160)
T 1r62_A 117 SG---------------REGGTGLGLSIARNLIDQHSGKIEFTSW 146 (160)
T ss_dssp ----------------------CHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cC---------------CCCCCccCHHHHHHHHHHCCCeEEEEeC
Confidence 11 1146899998765553 34555554
No 50
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.65 E-value=3.8e-05 Score=66.87 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=48.2
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcC--CCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDK--ESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFME 123 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~ 123 (388)
.+|.+||.||+.++.. ...+.|.+.... +...|+|.|||.||+.+.+...|....++ ..
T Consensus 46 ~il~nLl~NAi~~~~~--------------~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~-~~---- 106 (177)
T 3sl2_A 46 QVLDNIISNALKYSPE--------------GGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRV-DK---- 106 (177)
T ss_dssp HHHHHHHHHHHHTCCT--------------TCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCC-C-----
T ss_pred HHHHHHHHHHHHhCCC--------------CCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccC-CC----
Confidence 3788999999998641 123556654333 33568999999999999886544332222 11
Q ss_pred HHhcCCCCccccccchhhhhhhhc
Q psy10019 124 ALQAGADISMIGQFGVGFYSAYLV 147 (388)
Q Consensus 124 ~~~~~~~~~~IG~FGIGf~S~F~v 147 (388)
......+..|+|++.+-.+
T Consensus 107 -----~~~~~~~g~GlGL~iv~~~ 125 (177)
T 3sl2_A 107 -----ARTRKLGGTGLGLAIAKEM 125 (177)
T ss_dssp ----------CCCCCCHHHHHHHH
T ss_pred -----CCCCCCCCCCcCHHHHHHH
Confidence 0112346789999876554
No 51
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.62 E-value=9.7e-05 Score=74.08 Aligned_cols=101 Identities=20% Similarity=0.217 Sum_probs=56.2
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+.|+....-.. . ...+.+.|.+..+.+...|+|.|||.||+.+++.+.|....+. +.. ..+
T Consensus 256 ~vl~NLl~NAik~~~~~~~~~---~---~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~-~~~--~~~ 326 (419)
T 1y8o_A 256 HMLFELFKNSMRATVELYEDR---K---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYST-APR--PSL 326 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---S---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC----------
T ss_pred HHHHHHHHHHHHHHHhhcccc---C---CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCccccc-CCC--CCc
Confidence 478999999999986421000 0 0013466666655555679999999999999997655432222 110 000
Q ss_pred hcCCCCccccccchhhhhhhhcc----CeEEEEee
Q psy10019 126 QAGADISMIGQFGVGFYSAYLVA----DKVTVHSK 156 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v~----d~v~V~Sk 156 (388)
. .......+.+|+|+.-|-.++ -.+.|.|.
T Consensus 327 ~-~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~ 360 (419)
T 1y8o_A 327 E-PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSM 360 (419)
T ss_dssp -------CC--CTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred c-ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEec
Confidence 0 001234578999998765553 34555544
No 52
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.62 E-value=4.2e-05 Score=64.21 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=47.1
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+.++.. ...+.|.+..+.+...|.|.|||.||+.+++.+.|... .+
T Consensus 50 ~il~nll~NAi~~~~~--------------~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~-~~--------- 105 (152)
T 3a0y_A 50 QVLINLVQNAIEATGE--------------NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPF-FT--------- 105 (152)
T ss_dssp HHHHHHHHHHHHHHCT--------------TCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTT-CC---------
T ss_pred HHHHHHHHHHHHhcCC--------------CCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhh-cc---------
Confidence 3678999999998731 12355665555555679999999999999885444221 11
Q ss_pred hcCCCCccccccchhhhhhhhc
Q psy10019 126 QAGADISMIGQFGVGFYSAYLV 147 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v 147 (388)
...+..|+|++.+-.+
T Consensus 106 ------~~~~g~GlGL~i~~~~ 121 (152)
T 3a0y_A 106 ------TKTQGTGLGLSICRKI 121 (152)
T ss_dssp ------CC--CCCCSHHHHHHH
T ss_pred ------CCCCCCCcCHHHHHHH
Confidence 1124679999876443
No 53
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.61 E-value=3.9e-05 Score=65.60 Aligned_cols=84 Identities=10% Similarity=0.143 Sum_probs=53.6
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEAL 125 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~~ 125 (388)
.+|.+||.||+.+.. ..+.|.+..+.+...|.|.|||.||+.+++...|... .+++
T Consensus 50 ~il~nll~NAik~~~----------------~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f-~~~~------- 105 (161)
T 1bxd_A 50 RAVANMVVNAARYGN----------------GWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPF-VRGD------- 105 (161)
T ss_dssp HHHHHHHHHHHTTCC----------------SCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCC-CCCS-------
T ss_pred HHHHHHHHHHHhhcC----------------CeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCc-eeCC-------
Confidence 377889999987751 2466666666556779999999999999885444322 1111
Q ss_pred hcCCCCccccccchhhhhhhhc----cCeEEEEeec
Q psy10019 126 QAGADISMIGQFGVGFYSAYLV----ADKVTVHSKH 157 (388)
Q Consensus 126 ~~~~~~~~IG~FGIGf~S~F~v----~d~v~V~Sk~ 157 (388)
.....+..|+|++.+-.+ +-++.+.+..
T Consensus 106 ----~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 106 ----SARTISGTGLGLAIVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp ----CCCCCCCCSCCCCTTHHHHHHHTSEEEEEEET
T ss_pred ----CCCCCCCcccCHHHHHHHHHHcCCEEEEEECC
Confidence 111236789998766544 3455665543
No 54
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00026 Score=79.81 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHHHHHHhchHhH-hhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHH--------HHHHHHHHhhcc
Q psy10019 46 IFLRELISNSSDA-LDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKA--------DLVNNLGTIAKS 116 (388)
Q Consensus 46 ~~lRELIqNA~DA-~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~e--------dl~~~l~~Ig~S 116 (388)
..+.|.|.||+|- .+- ..--.|.|.++.++..|+|.|||.||+-+ -++-.|+++-++
T Consensus 62 hl~~EildNsiDea~ag--------------~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG 127 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVRD--------------PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 127 (1177)
T ss_dssp HHHHHHHHHHHHHHHHC--------------TTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred eEeeEEEEChHhHHhhC--------------CCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccc
Confidence 5689999999994 330 01126777777778899999999999853 233356666666
Q ss_pred CchhHHHHHhcCCCCccccccchhhhhhhhccCeEEEEeecC-CCeeEEEEEecCCc----eeeecCCCCCCCCCcEEEE
Q psy10019 117 GTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHN-DDEQYIWESSAGGS----FTIKPDHGEQLGRGTKMVL 191 (388)
Q Consensus 117 ~k~~f~~~~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk~~-~~~~~~w~~~~~~~----~~i~~~~~~~~~~GT~I~l 191 (388)
|+-. .+.-...-|.-|+|..-|=.++.++.|++... ++..|.-....+.. -.+.. ......||+|+.
T Consensus 128 gKFd------~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~--~~~~~tGT~V~F 199 (1177)
T 4gfh_A 128 SNYD------DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITS--YKKGPSYTKVTF 199 (1177)
T ss_dssp SCCC------CSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEE--CCSSCCCEEEEE
T ss_pred cCcC------CCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeec--CCCCCCceEEEE
Confidence 6521 11112356999999998888899888877532 33444333332211 12222 133467999987
Q ss_pred EE
Q psy10019 192 YI 193 (388)
Q Consensus 192 ~L 193 (388)
.-
T Consensus 200 ~P 201 (1177)
T 4gfh_A 200 KP 201 (1177)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 55
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.51 E-value=9.1e-05 Score=73.26 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=58.5
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHH---
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFM--- 122 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~--- 122 (388)
.+|.+||.||+.|+....-. .. ...+.+.|.+....+...|+|.|||.||+.+++.+.|... .+++..-.
T Consensus 241 ~il~NLl~NAik~~~~~~~~---~~---~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f-~~~~~~~~~~~ 313 (388)
T 1gkz_A 241 YILPELLKNAMRATMESHLD---TP---YNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYH-FTTAEASTQDP 313 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCTT---CT---TSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTT-CCCC-------
T ss_pred HHHHHHHHHHHHHhhccccC---CC---CCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcc-cccCCCccccc
Confidence 48999999999998642100 00 0123466666655555679999999999999986554332 22221100
Q ss_pred ------HHHh--cCCCCccccccchhhhhhhhcc----CeEEEEee
Q psy10019 123 ------EALQ--AGADISMIGQFGVGFYSAYLVA----DKVTVHSK 156 (388)
Q Consensus 123 ------~~~~--~~~~~~~IG~FGIGf~S~F~v~----d~v~V~Sk 156 (388)
..+. ........+.+|+|+.-|-.++ -.+.|.|.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~ 359 (388)
T 1gkz_A 314 RISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSL 359 (388)
T ss_dssp ------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEec
Confidence 0000 0011234577999998765553 34555554
No 56
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.42 E-value=0.00022 Score=58.98 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=33.8
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL 106 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl 106 (388)
.+++||+.||+.+.. ...+.|.+..+.+...|.|.|||.||+.+.+
T Consensus 43 ~il~nll~Na~k~~~---------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 43 MCLKEAVTNVVKHSQ---------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHTC---------------CSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHhcCC---------------CcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 378899999988753 1235666666555667999999999986644
No 57
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.32 E-value=0.00022 Score=58.37 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=33.3
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD 105 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed 105 (388)
.++.+||.||+.+.. ...+.|.+..+.+ ..|+|.|||.||+.+.
T Consensus 46 ~il~nll~NA~k~~~---------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 46 AVVREAVSNAVRHAA---------------ASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHCCCCSS---------------CCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHhCC---------------CceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 368999999988752 1246777776666 7899999999998654
No 58
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.23 E-value=0.00084 Score=66.48 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=55.8
Q ss_pred HHHHHHhchHhHhhhhh--hhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHH---------------
Q psy10019 47 FLRELISNSSDALDKIR--YESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNN--------------- 109 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r--~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~--------------- 109 (388)
.|.+||.||+|++-... ......+ ....+.|.+..+.+...|+|.|||.||+.+.+.+.
T Consensus 110 ~l~nLl~NAi~h~~e~~~~r~~~gk~----~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~ 185 (379)
T 1b3q_A 110 PLLHLLRNAIDHGIEPKEERIAKGKP----PIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATL 185 (379)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHTTCC----SSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTS
T ss_pred HHHHHHHHHHHhcCCCHHHHHhcCCC----CCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcC
Confidence 48999999999972100 0000000 11234555544545567999999999999987431
Q ss_pred -----HHHhhccCchhHHHHHhcCCCCccccccchhhhhhh----hccCeEEEEeecCCCeeE
Q psy10019 110 -----LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY----LVADKVTVHSKHNDDEQY 163 (388)
Q Consensus 110 -----l~~Ig~S~k~~f~~~~~~~~~~~~IG~FGIGf~S~F----~v~d~v~V~Sk~~~~~~~ 163 (388)
+..|...+.+. .......+..|+|+.-+- .++-++.|.|....+..+
T Consensus 186 ~~~~~~~~iF~p~fst-------~~~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f 241 (379)
T 1b3q_A 186 SDQEILNFLFVPGFST-------KEKVSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKV 241 (379)
T ss_dssp CTHHHHSGGGSTTCC------------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEE
T ss_pred CHHHHHHHhcCCCCcc-------CCccCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEE
Confidence 12232221110 011233467899987543 346789999986544433
No 59
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.15 E-value=0.00075 Score=54.85 Aligned_cols=44 Identities=23% Similarity=0.453 Sum_probs=33.1
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKAD 105 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~ed 105 (388)
.++.||+.||+.+... ..+.|.+..+.+ ..|+|.|||.||+.+.
T Consensus 42 ~il~nll~Na~k~~~~---------------~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 42 AVLREAVSNAVRHANA---------------TSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHTCTTC---------------CEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHhCCC---------------CEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 3788999999877531 236666666666 7899999999998764
No 60
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.87 E-value=0.00028 Score=67.23 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=37.3
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNL 110 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~GMs~edl~~~l 110 (388)
+|.+||.||+.+... ...+.|.+....+...|+|.|||.||+.+.+.+.|
T Consensus 248 vl~nLl~NA~k~~~~--------------~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if 297 (349)
T 3a0r_A 248 VLINLVQNAIEATGE--------------NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIF 297 (349)
T ss_dssp HHHHHHTHHHHTTCT--------------TCCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTS
T ss_pred HHHHHHHHHHHhccC--------------CCEEEEEEEecCCEEEEEEEECCCCCChHHHhhcC
Confidence 788999999998631 13456666655555779999999999999875433
No 61
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=96.06 E-value=0.0092 Score=55.05 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=32.7
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCCCCEEEEEeCCCC--CCHHHHHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIG--MTKADLVN 108 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~V~DNG~G--Ms~edl~~ 108 (388)
++.-||.||++|.. .+..+.|.+....+...|+|.|+|.| ++.+.+..
T Consensus 150 vl~NLl~NA~~a~~--------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~ 199 (247)
T 4fpp_A 150 AVLNIAQIAASALP--------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAG 199 (247)
T ss_dssp HHHHHHHHHHTTCT--------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHH
Confidence 56678889888863 12346666666666677999999977 66554443
No 62
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=93.39 E-value=0.12 Score=51.12 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=44.4
Q ss_pred HHHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHHHhhccCchhHHHH
Q psy10019 46 IFLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKE-SRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124 (388)
Q Consensus 46 ~~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~V~DNG~GMs~edl~~~l~~Ig~S~k~~f~~~ 124 (388)
.++.||+.||+..... . .....+.|++....+ ...|.|.|+|.|++.. +.
T Consensus 300 l~v~El~~Nav~Ha~~-------~----~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~------- 350 (399)
T 3ke6_A 300 HAISEFVENAVEHGYA-------T----DVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG------- 350 (399)
T ss_dssp HHHHHHHHHHHHHBCC-------S----CCTTCEEEEEEECTTSEEEEEEEESCBC------------------------
T ss_pred HHHHHHHHHHHHhccc-------C----CCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC-------
Confidence 5999999999998631 0 012346666666533 4679999999999864 10
Q ss_pred HhcCCCCccccccchhhhhhhhccCeEEEEee
Q psy10019 125 LQAGADISMIGQFGVGFYSAYLVADKVTVHSK 156 (388)
Q Consensus 125 ~~~~~~~~~IG~FGIGf~S~F~v~d~v~V~Sk 156 (388)
-+.-|.|++-+-.+++.+.+.+.
T Consensus 351 ---------~~~~G~GL~lv~~l~~~~~~~~~ 373 (399)
T 3ke6_A 351 ---------ARGRGRGLAMAEALVSEARIMHG 373 (399)
T ss_dssp ---------------CHHHHHTTSSEEEEEEE
T ss_pred ---------CCCCCcHHHHHHHHHHheeeEEC
Confidence 03457788888888898877654
No 63
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=84.92 E-value=0.88 Score=40.70 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=36.3
Q ss_pred HHHHHHhchHhHhhhhhhhccCCCccccCCCcceEEEEEc--CCCCEEEEEeCCCCCCHHHHHHHH
Q psy10019 47 FLRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPD--KESRTLTIIDSGIGMTKADLVNNL 110 (388)
Q Consensus 47 ~lRELIqNA~DA~~~~r~~~~~~~~~~~~~~~~~I~I~~d--~~~~~l~V~DNG~GMs~edl~~~l 110 (388)
.+-.|+.||.+|..... .+ .....+.|.+..+ .+...|.|.|+|.|++.+.+.+.|
T Consensus 109 ~lgnLi~na~~Ai~~~~-----~~---~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQAV-----SR---ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp HHHHHHHHHHHHHHHHB-----CT---TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---
T ss_pred HHHHHHHHHHHHHHhhh-----cc---CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHH
Confidence 45679999999985310 01 1123456666655 456789999999999998875444
No 64
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=83.39 E-value=0.22 Score=51.84 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=0.0
Q ss_pred CCC---cCCCCchHHHHHHHHHhcc
Q psy10019 253 TPK---IEDYGWTANMERIMKAQAL 274 (388)
Q Consensus 253 sP~---v~~~~~s~~Merimka~~~ 274 (388)
||+ ++++|||++|||||++|+|
T Consensus 535 sp~~~v~~~~~~~~~m~~~~~~~~~ 559 (559)
T 1y4s_A 535 TPAIVSTDADEMSTQMAKLFAAAGQ 559 (559)
T ss_dssp -------------------------
T ss_pred CCEEEEeCCCCcCHHHHHHHHhcCC
Confidence 886 3899999999999999863
Done!