RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10019
(388 letters)
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug
design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP:
d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Length = 264
Score = 449 bits (1156), Expect = e-160
Identities = 185/229 (80%), Positives = 210/229 (91%)
Query: 11 QDVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDP 70
D M + +VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYE+LTDP
Sbjct: 36 SDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDP 95
Query: 71 SRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGAD 130
S+L+S KEL I +IP+K+ RTLTI+D+GIGMTKADL+NNLGTIAKSGTKAFMEALQAGAD
Sbjct: 96 SKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGAD 155
Query: 131 ISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLGRGTKMV 190
ISMIGQFGVGFYSAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D GE +GRGTK++
Sbjct: 156 ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVI 215
Query: 191 LYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEE 239
L++KEDQ EYLEE++IKEIVKKHSQFIGYPI L VEKER+KE+ +DE E
Sbjct: 216 LHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAE 264
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo
sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A*
1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A*
1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A*
2vci_A* ...
Length = 228
Score = 447 bits (1152), Expect = e-160
Identities = 186/228 (81%), Positives = 210/228 (92%)
Query: 12 DVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS 71
D M + +VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS
Sbjct: 1 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS 60
Query: 72 RLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADI 131
+L+S KEL I +IP+K+ RTLTI+D+GIGMTKADL+NNLGTIAKSGTKAFMEALQAGADI
Sbjct: 61 KLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADI 120
Query: 132 SMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLGRGTKMVL 191
SMIGQFGVGFYSAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D GE +GRGTK++L
Sbjct: 121 SMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVIL 180
Query: 192 YIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEE 239
++KEDQ EYLEE++IKEIVKKHSQFIGYPI L VEKER+KE+ +DE E
Sbjct: 181 HLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAE 228
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor
complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A*
2fwy_A* 2h55_A*
Length = 256
Score = 447 bits (1153), Expect = e-159
Identities = 188/235 (80%), Positives = 213/235 (90%)
Query: 5 PQRMPEQDVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRY 64
P+ QD M + +VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRY
Sbjct: 22 PEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRY 81
Query: 65 ESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124
ESLTDPS+L+S KEL I +IP+K+ RTLTI+D+GIGMTKADL+NNLGTIAKSGTKAFMEA
Sbjct: 82 ESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEA 141
Query: 125 LQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLG 184
LQAGADISMIGQFGVGFYSAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D GE +G
Sbjct: 142 LQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMG 201
Query: 185 RGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEE 239
RGTK++L++KEDQ EYLEE++IKEIVKKHSQFIGYPI L VEKER+KE+ +DE E
Sbjct: 202 RGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAE 256
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone
inhibitor complex; HET: 7PP; 2.20A {Homo sapiens}
Length = 239
Score = 446 bits (1150), Expect = e-159
Identities = 181/238 (76%), Positives = 209/238 (87%), Gaps = 1/238 (0%)
Query: 5 PQRMPEQDVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRY 64
P MPE+ V + +VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIRY
Sbjct: 2 PTLMPEE-VHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRY 60
Query: 65 ESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEA 124
ESLTDPS+L+S KEL+I IIP+ + RTLT++D+GIGMTKADL+NNLGTIAKSGTKAFMEA
Sbjct: 61 ESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEA 120
Query: 125 LQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLG 184
LQAGADISMIGQFGVGFYSAYLVA+KV V +KHNDDEQY WESSAGGSFT++ DHGE +G
Sbjct: 121 LQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIG 180
Query: 185 RGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEEKE 242
RGTK++L++KEDQ EYLEE+++KE+VKKHSQFIGYPI L +EKEREK +
Sbjct: 181 RGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKGEFNSKLGCFG 238
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding,
phosphoprotein, stress respo nucleotide-binding; HET:
RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A*
2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A*
2ygf_A* 2akp_A
Length = 220
Score = 438 bits (1130), Expect = e-156
Identities = 152/216 (70%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 21 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELE 80
ETF FQAEI QLMSLIINT YSNKEIFLRE++SN+SDALDKIRY+SL+DP +LE++ +L
Sbjct: 4 ETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLF 63
Query: 81 IKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVG 140
I+I P E + L I DSGIGMTKA+L+NNLGTIAKSGTKAFMEAL AGAD+SMIGQFGVG
Sbjct: 64 IRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVG 123
Query: 141 FYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDH-GEQLGRGTKMVLYIKEDQAE 199
FYS +LVAD+V V SK NDDEQYIWES+AGGSFT+ D E++GRGT + L++K+DQ E
Sbjct: 124 FYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLE 183
Query: 200 YLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEE 235
YLEEK+IKE++K+HS+F+ YPI+L+V KE EKE+
Sbjct: 184 YLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPI 219
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 439 bits (1131), Expect = e-156
Identities = 123/252 (48%), Positives = 173/252 (68%), Gaps = 2/252 (0%)
Query: 3 YQPQRMPEQDVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKI 62
+ +E+ +Q E+ +LM +I+N+ Y+ KE+FLRELISN++DAL+KI
Sbjct: 6 HHSSGRENLYFQGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKI 65
Query: 63 RYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFM 122
R+ SL+D S L +K+LEI+I +KE L+I D+GIGMTK DL+NNLGTIAKSGT F+
Sbjct: 66 RFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFL 125
Query: 123 EAL-QAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPD-HG 180
EA+ ++G D+S+IGQFGVGFYSA+LVADKV V++K+NDDEQYIWES+A FTI D G
Sbjct: 126 EAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIYKDPRG 185
Query: 181 EQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEE 240
L RGT++ L++KED L +KK+ +++ K+SQFI +PI LL E +E+ D ++
Sbjct: 186 ATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKD 245
Query: 241 KEKDKEENEDDK 252
D +
Sbjct: 246 MVNDPNYDSVKV 257
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 435 bits (1122), Expect = e-155
Identities = 125/245 (51%), Positives = 165/245 (67%), Gaps = 5/245 (2%)
Query: 20 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKEL 79
E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +EL
Sbjct: 5 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEEL 64
Query: 80 EIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG-----ADISMI 134
+KI DKE L + D+G+GMT+ +LV NLGTIAKSGT F+ + + +I
Sbjct: 65 TVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELI 124
Query: 135 GQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLGRGTKMVLYIK 194
GQFGVGFYSA+LVADKV V SKHN+D Q+IWES + I G LGRGT + L +K
Sbjct: 125 GQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLK 184
Query: 195 EDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTP 254
E+ ++YLE IK +VKK+SQFI +PI + K E +EEE +++KE+++D+
Sbjct: 185 EEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAV 244
Query: 255 KIEDY 259
+ E+
Sbjct: 245 EEEEE 249
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA,
NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus
familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A*
1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A*
1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Length = 236
Score = 433 bits (1116), Expect = e-154
Identities = 119/231 (51%), Positives = 151/231 (65%), Gaps = 5/231 (2%)
Query: 14 SMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRL 73
M + E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L
Sbjct: 3 HMLREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL 62
Query: 74 ESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG----- 128
+EL +KI DKE L + D+G+GMT+ +LV NLGTIAKSGT F+ +
Sbjct: 63 AGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQ 122
Query: 129 ADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLGRGTK 188
+ +IGQFGVGFYSA+LVADKV V SKHN+D Q+IWES + I G LGRGT
Sbjct: 123 STSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTT 182
Query: 189 MVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEE 239
+ L +KE+ ++YLE IK +VKK+SQFI +PI + K + E
Sbjct: 183 ITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWE 233
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A
{Escherichia coli}
Length = 235
Score = 397 bits (1023), Expect = e-140
Identities = 99/230 (43%), Positives = 155/230 (67%), Gaps = 10/230 (4%)
Query: 4 QPQRMPEQDVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 63
+P Q ET FQ+E+ QL+ L+I++ YSNKEIFLRELISN+SDA DK+R
Sbjct: 11 SSGLVPRGSHMKGQ---ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLR 67
Query: 64 YESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFME 123
+ +L++P E EL +++ DK+ RTLTI D+G+GMT+ +++++LGTIAKSGTK+F+E
Sbjct: 68 FRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLE 127
Query: 124 ALQA--GADISMIGQFGVGFYSAYLVADKVTVHSK---HNDDEQYIWESSAGGSFTIKPD 178
+L + D +IGQFGVGFYSA++VADKVTV ++ + WES+ G +T+
Sbjct: 128 SLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADI 187
Query: 179 HGEQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKE 228
E RGT++ L+++E + E+L++ +++ I+ K+S I P+++ +E
Sbjct: 188 TKE--DRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREE 235
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 403 bits (1038), Expect = e-136
Identities = 160/239 (66%), Positives = 198/239 (82%), Gaps = 1/239 (0%)
Query: 21 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELE 80
ETF FQAEI QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+SL+DP +LE++ +L
Sbjct: 4 ETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLF 63
Query: 81 IKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVG 140
I+I P E + L I DSGIGMTKA+L+NNLGTIAKSGTKAFMEAL AGAD+SMIGQFGVG
Sbjct: 64 IRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVG 123
Query: 141 FYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDH-GEQLGRGTKMVLYIKEDQAE 199
FYS +LVAD+V V SK NDDEQYIWES+AGGSFT+ D E++GRGT + L++K+DQ E
Sbjct: 124 FYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLE 183
Query: 200 YLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPKIED 258
YLEEK+IKE++K+HS+F+ YPI+L+V KE EKE+ EEE+K+++K++ E +
Sbjct: 184 YLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKP 242
Score = 133 bits (337), Expect = 2e-34
Identities = 65/153 (42%), Positives = 92/153 (60%), Gaps = 26/153 (16%)
Query: 225 VEKEREKELEEDEEEEKEKDKEENED----------DKTPKIE---------------DY 259
+ K+ E E ++E+ E+EK+ +E E D+ K+ +
Sbjct: 524 ITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQF 583
Query: 260 GWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKAD-ADKNDKAVKDLV 318
GW+ANMERIMKAQALRD+S YM++KK EI+P II+ L+++ D DK VKDL
Sbjct: 584 GWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLT 643
Query: 319 MLLFETALLSSGFGLEDPQVHAARIHRMIKLGL 351
LL+ETALL+SGF L++P A+RI+R+I LGL
Sbjct: 644 KLLYETALLTSGFSLDEPTSFASRINRLISLGL 676
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 393 bits (1012), Expect = e-132
Identities = 119/236 (50%), Positives = 150/236 (63%), Gaps = 5/236 (2%)
Query: 10 EQDVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTD 69
V E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD
Sbjct: 12 SGLVPRGSHMSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTD 71
Query: 70 PSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG- 128
+ L +EL +KI DKE L + D+G+GMT+ +LV NLGTIAKSGT F+ +
Sbjct: 72 ENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQ 131
Query: 129 ----ADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLG 184
+ +IGQFGVGFYSA+LVADKV V SKHN+D Q+IWES + I G LG
Sbjct: 132 EDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLG 191
Query: 185 RGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEE 240
RGT + L +KE+ ++YLE IK +VKK+SQFI +PI + K + E
Sbjct: 192 RGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWEL 247
Score = 142 bits (359), Expect = 2e-37
Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 35/197 (17%)
Query: 190 VLYIKEDQAEYL-------EEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEEK- 241
V+Y+ E EY + K+ + + K+ +K ++ ++ E E+E +
Sbjct: 477 VIYLTEPVDEYCIQALPEFDGKRFQNVAKEG-------VKFDESEKTKESREAIEKEFEP 529
Query: 242 --EKDKEENEDDKTPKI---------------EDYGWTANMERIMKAQAL---RDTSTMG 281
K++ DK K YGW+ NMERIMKAQA +D ST
Sbjct: 530 LLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNY 589
Query: 282 YMAAKKHLEINPDHNIIETLRQKADADKNDKAVKDLVMLLFETALLSSGFGLEDPQVHAA 341
Y + KK EINP H +I+ + ++ D++DK V DL ++LFETA L SG+ L D + +
Sbjct: 590 YASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGD 649
Query: 342 RIHRMIKLGLGIDDDDE 358
RI RM++L L ID D +
Sbjct: 650 RIERMLRLSLNIDPDAK 666
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 367 bits (944), Expect = e-123
Identities = 100/229 (43%), Positives = 157/229 (68%), Gaps = 9/229 (3%)
Query: 15 MAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLE 74
M ET FQ+E+ QL+ L+I++ YSNKEIFLRELISN+SDA DK+R+ +L++P E
Sbjct: 1 MKG--QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYE 58
Query: 75 SKKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQA--GADIS 132
EL +++ DK+ RTLTI D+G+GMT+ +++++LGTIAKSGTK+F+E+L + D
Sbjct: 59 GDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQ 118
Query: 133 MIGQFGVGFYSAYLVADKVTVHSK---HNDDEQYIWESSAGGSFTIKPDHGEQLGRGTKM 189
+IGQFGVGFYSA++VADKVTV ++ + WES+ G +T+ E RGT++
Sbjct: 119 LIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKED--RGTEI 176
Query: 190 VLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEE 238
L+++E + E+L++ +++ I+ K+S I P+++ +E++ E E
Sbjct: 177 TLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWE 225
Score = 34.9 bits (81), Expect = 0.048
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 26/84 (30%)
Query: 215 QFIGYPIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPKI------------------ 256
+F G P + + + + E DE +E K+ E+ ++
Sbjct: 474 EFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLT 533
Query: 257 --------EDYGWTANMERIMKAQ 272
+ + M ++ A
Sbjct: 534 DTPAIVSTDADEMSTQMAKLFAAA 557
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 368 bits (946), Expect = e-123
Identities = 99/223 (44%), Positives = 156/223 (69%), Gaps = 7/223 (3%)
Query: 21 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELE 80
ET FQ+E+ QL+ L+I++ YSNKEIFLRELISN+SDA DK+R+ +L++P E EL
Sbjct: 5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELR 64
Query: 81 IKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQA--GADISMIGQFG 138
+++ DK+ RTLTI D+G+GMT+ +++++LGTIAKSGTK+F+E+L + D +IGQFG
Sbjct: 65 VRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFG 124
Query: 139 VGFYSAYLVADKVTVHSK---HNDDEQYIWESSAGGSFTIKPDHGEQLGRGTKMVLYIKE 195
VGFYSA++VADKVTV ++ + WES+ G +T+ E RGT++ L+++E
Sbjct: 125 VGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKED--RGTEITLHLRE 182
Query: 196 DQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEE 238
+ E+L++ +++ I+ K+S I P+++ +E++ E E
Sbjct: 183 GEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWE 225
Score = 98.1 bits (245), Expect = 2e-22
Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 39/151 (25%)
Query: 225 VEKEREKELEEDEEEEKEKDKEENEDDKT----------PKIED---------------- 258
V K ++ LE+ +E E KE + +++D
Sbjct: 483 VSKV-DESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVST 541
Query: 259 --YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKADADKNDKAVKD 316
+ M ++ A + K E+NPDH ++ ++A +++ +
Sbjct: 542 DADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLV----KRAADTEDEAKFSE 591
Query: 317 LVMLLFETALLSSGFGLEDPQVHAARIHRMI 347
V LL + ALL+ LEDP + R+++++
Sbjct: 592 WVELLLDQALLAERGTLEDPNLFIRRMNQLL 622
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics,
structura genomics consortium, SGC, stress response;
HET: AN2; 2.01A {Plasmodium falciparum}
Length = 272
Score = 350 bits (900), Expect = e-121
Identities = 102/260 (39%), Positives = 163/260 (62%), Gaps = 44/260 (16%)
Query: 10 EQDVSMAQGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTD 69
+++ VE + F+AE+ ++M +I+N+ Y++K++FLRELISN+SDA DK R +
Sbjct: 14 RENLYFQGSPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENN 73
Query: 70 PSRLESK------------------------------------KELEIKIIPDKESRTLT 93
+++ K+L IKI PDKE +TLT
Sbjct: 74 KLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLT 133
Query: 94 IIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAYLVADKVT 152
I D+GIGM K++L+NNLGTIA+SGT F++ ++ G AD ++IGQFGVGFYS++LV+++V
Sbjct: 134 ITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNRVE 193
Query: 153 VHSKHNDDEQYIWESSAGGSFTIKP------DHGEQLGRGTKMVLYIKEDQAEYLEEKKI 206
V++K +D+ Y W S GSF++ ++ + G GTK++L++KE+ EYLE+ K+
Sbjct: 194 VYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKL 252
Query: 207 KEIVKKHSQFIGYPIKLLVE 226
KE++KK+S+FI +PI++ E
Sbjct: 253 KELIKKYSEFIKFPIEIWSE 272
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 182 bits (465), Expect = 1e-53
Identities = 111/184 (60%), Positives = 134/184 (72%), Gaps = 28/184 (15%)
Query: 232 ELEEDEEEEKEKDKEENE------------DDKTPKIE---------------DYGWTAN 264
EL EDEEE+K++++++ + + K K+ YGWTAN
Sbjct: 260 ELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTAN 319
Query: 265 MERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKADADKNDKAVKDLVMLLFET 324
MERIMKAQALRD STMGYMAAKKHLEINPDH+IIETLRQKA+ADKNDK+VKDLV+LL+ET
Sbjct: 320 MERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYET 379
Query: 325 ALLSSGFGLEDPQVHAARIHRMIKLGLGIDDDDEVPAEASKAADVDITPVDGDSEDASRM 384
ALLSSGF LEDPQ HA RI+RMIKLGLGID+DD + S A ++ P++GD +D SRM
Sbjct: 380 ALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGD-DDTSRM 438
Query: 385 EEVD 388
EEVD
Sbjct: 439 EEVD 442
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 167 bits (425), Expect = 7e-48
Identities = 76/164 (46%), Positives = 104/164 (63%), Gaps = 27/164 (16%)
Query: 232 ELEEDEEEEK--EKDKEENED----------DKTPKI---------------EDYGWTAN 264
EE EEE++ E++K E DK K+ ++GW+A+
Sbjct: 276 HFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEFGWSAH 335
Query: 265 MERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKADADKNDKAVKDLVMLLFET 324
ME+IM+ QALRD+S YM +KK +E+NP H II+ LR++ AD+NDKAVKDLV LLF+T
Sbjct: 336 MEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDT 395
Query: 325 ALLSSGFGLEDPQVHAARIHRMIKLGLGIDDDDEVPAEASKAAD 368
+LL+SGF LEDP +A RI+RMIKLGL +D+++E AEA A
Sbjct: 396 SLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEAAEAPVAET 439
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 150 bits (382), Expect = 6e-42
Identities = 65/153 (42%), Positives = 92/153 (60%), Gaps = 26/153 (16%)
Query: 225 VEKEREKELEEDEEEEKEKDKEENED----------DKTPKIE---------------DY 259
+ K+ E E ++E+ E+EK+ +E E D+ K+ +
Sbjct: 252 ITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQF 311
Query: 260 GWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKAD-ADKNDKAVKDLV 318
GW+ANMERIMKAQALRD+S YM++KK EI+P II+ L+++ D DK VKDL
Sbjct: 312 GWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLT 371
Query: 319 MLLFETALLSSGFGLEDPQVHAARIHRMIKLGL 351
LL+ETALL+SGF L++P A+RI+R+I LGL
Sbjct: 372 KLLYETALLTSGFSLDEPTSFASRINRLISLGL 404
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface,
exposed amphipathic helix, three stranded beta sheet;
2.60A {Escherichia coli} SCOP: d.271.1.1
Length = 126
Score = 108 bits (272), Expect = 5e-29
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 257 EDYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKADADKNDKAVKD 316
+ + M ++ A + K E+NPDH ++ ++A +++ +
Sbjct: 44 DADEMSTQMAKLFAAAGQKV------PEVKYIFELNPDHVLV----KRAADTEDEAKFSE 93
Query: 317 LVMLLFETALLSSGFGLEDPQVHAARIHRMI 347
V LL + ALL+ LEDP + R+++++
Sbjct: 94 WVELLLDQALLAERGTLEDPNLFIRRMNQLL 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 77/466 (16%), Positives = 139/466 (29%), Gaps = 172/466 (36%)
Query: 10 EQDVSMAQGDVETFAFQAEIAQLMS----------LIINTFYSNKEIFLRELISNSSDAL 59
E + D+ A A+L+ +I + + + + R S+ AL
Sbjct: 92 ENCY-LEGNDIHALA-----AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 60 DKIRYESLTDPSRLESKKELEIKII--------PD---KESRTL-----TIIDSGIGMTK 103
+ E +++ D +E R L ++ I +
Sbjct: 146 -------------FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS- 191
Query: 104 ADLVNNLGTIAKSGTKAFMEALQ-----------------AGADISM--IG--QFGVGFY 142
A+ ++ L K F + L IS IG Q
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL----- 246
Query: 143 SAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLGRGTKMV--LYI-KEDQAE 199
+ Y+V K + + + G + G +V + I + D E
Sbjct: 247 AHYVVTAK--LLGFTPGE---LRSYLKGAT-----------GHSQGLVTAVAIAETDSWE 290
Query: 200 YLEEKKIKEIVKKHSQFIG------YPIKLLVEKEREKELEEDEEEEKEKDKEENEDDKT 253
K I FIG YP L + ED E NE +
Sbjct: 291 SFFVSVRKAI--TVLFFIGVRCYEAYPNTSL-----PPSILEDSL-------ENNEGVPS 336
Query: 254 PKIEDYGWTANM---ERIMKAQ---ALRDTSTMGYMAAKKHLEI---N-PDHNII----E 299
P M + + Q + T++ ++ A K +EI N + ++ +
Sbjct: 337 P----------MLSISNLTQEQVQDYVNKTNS--HLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 300 TL--------RQKADADKN-------DKAVKDLVMLLFETALL--SSGFGLEDPQVHAAR 342
+L + KA + + ++ +K F L +S F H+
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLK------FSNRFLPVASPF-------HS-- 429
Query: 343 IHRMIKLGLGIDDDDEVPAEASKAADVDITPVDGDSEDASRMEEVD 388
H ++ I+ D + A D+ I PV D+ D S + +
Sbjct: 430 -HLLVPASDLINKDLVKNNVSFNAKDIQI-PVY-DTFDGSDLRVLS 472
Score = 31.6 bits (71), Expect = 0.51
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 1 MAYQPQRMPEQDVSMAQGDVETFA--FQAEIAQLMSLIINTFY--SNKEIFLRELISNSS 56
+A P R+ S +Q ++ L+ I+N Y N++ + +
Sbjct: 1810 IAINPGRV---AASFSQEALQYVVERVGKRTGWLVE-IVN--YNVENQQY----VAAGDL 1859
Query: 57 DALDKIRYESLTDPSRLESKKELEIKIIPDKESRTL 92
ALD +T+ L K +I II ++S +L
Sbjct: 1860 RALDT-----VTN--VLNFIKLQKIDIIELQKSLSL 1888
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.5 bits (94), Expect = 3e-04
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 220 PIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPKIEDYGWTANM-ERIMKAQAL-RDT 277
I+ E E+ K L+E + K ++E + +E+ W E++ K + R
Sbjct: 86 SIRKWRE-EQRKRLQELDAASKVM-EQEWREKAKKDLEE--WNQRQSEQVEKNKINNR-- 139
Query: 278 STMGYMAAKKHLEINPDHNII 298
A K PD +II
Sbjct: 140 ------IADKAFYQQPDADII 154
Score = 40.1 bits (93), Expect = 4e-04
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 194 KEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEE---DEEEEKEKDKEEN-E 249
+E+Q + L+E V + EK + K+LEE + E+ EK+K N
Sbjct: 91 REEQRKRLQELDAASKVMEQE---------WREKAK-KDLEEWNQRQSEQVEKNKINNRI 140
Query: 250 DDK 252
DK
Sbjct: 141 ADK 143
Score = 28.6 bits (63), Expect = 2.6
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 19/88 (21%)
Query: 229 REKELEEDEE------EEKEKDKEENEDDKTPKIEDYGWTANMERIMKAQALRDTSTMGY 282
+ L ++ E EE+ K +E + ++ + +A +D
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQE----------WREKAKKDLEEW-N 124
Query: 283 MAAKKHLEINPDHNII--ETLRQKADAD 308
+ +E N +N I + Q+ DAD
Sbjct: 125 QRQSEQVEKNKINNRIADKAFYQQPDAD 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 6e-04
Identities = 60/427 (14%), Positives = 120/427 (28%), Gaps = 118/427 (27%)
Query: 41 YSNKEI---FLRELISN--SSDALDKIRYESLTDPSRLESKKEL-EIKIIPDKESRTLTI 94
Y K+I F + N D D + + SK+E+ I + D S TL +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPK--------SILSKEEIDHIIMSKDAVSGTLRL 67
Query: 95 IDSGIGMTKADLVNN-LGTIAKSGTKAFMEALQAGA-DISMIGQFGVGFYSAYL--VADK 150
+ + + ++V + + + K M ++ SM+ + Y + +
Sbjct: 68 FWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR----MYIEQRDRLYND 122
Query: 151 VTVHSKHN-----------------DDEQYIWESSAGGSFTIKPDHGEQLGRGTKMVLYI 193
V +K+N + + I G LG G K + +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNV---------LI---DG-VLGSG-KTWVAL 168
Query: 194 KEDQAEYLEEK-------------KIKEIVKKHSQFIGYPI--KLLVEKEREKELEEDEE 238
+ ++ K E V + Q + Y I + ++
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 239 EEKEKDKEENEDDKTPK---IEDYGWTANMERIMKA-----QAL---RDTSTMGYMAAKK 287
+ + + + + A + A + L R +++A
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNA---KAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 288 HLEINPDHNII-----ET---LRQKADADKND-----KAVKDLVMLLFETALLSSGFGLE 334
I+ DH+ + E L + D D + + + G
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATW 344
Query: 335 D--PQVHAARIHRMIKLGLGIDDDDEVPAEASKA--------ADVDITP-------VDGD 377
D V+ ++ +I+ L + PAE K I D
Sbjct: 345 DNWKHVNCDKLTTIIESSL----NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 378 SEDASRM 384
D +
Sbjct: 401 KSDVMVV 407
Score = 37.9 bits (87), Expect = 0.006
Identities = 51/428 (11%), Positives = 126/428 (29%), Gaps = 150/428 (35%)
Query: 25 FQAEIAQLMSLIINTFYSNKEIFLRELISNSS--DALD---KI----RYESLTDPSRLES 75
+ A+L L+ + Y N + L + N+ +A + KI R++ +TD L +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTD--FLSA 283
Query: 76 KKELEIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKS-GTKAFMEALQAGA----D 130
I ++ + +T ++ + K + +
Sbjct: 284 ATTTHI-----------SLDHHSMTLTPDEV---KSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 131 ISMIGQFGVGF-----YSAYLVADKVTV-------HSKHNDDEQYIWESSAGGSFTIKPD 178
+S+I + ++ DK+T + + + ++ P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR------LSVFPP 383
Query: 179 H------------GEQLGRGTKMVLY-------IKEDQAE--------YLEEK-KIKEIV 210
+ + +V+ +++ E YLE K K++
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 211 KKHS---------------------------QFIGYPIKLLVEKEREKELEEDEEEEKEK 243
H IG+ + K +E E
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL---------KNIEHPE------ 488
Query: 244 DKEENEDDKTPKI-EDYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLR 302
+ D+ + +E+ ++ + ++ + + L+ + I +
Sbjct: 489 -----RMTLFRMVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPY-ICD--- 536
Query: 303 QKADADKNDKAVKDLVMLLF--ETALLSSGFGLEDPQVHAARIHRMIKLGLGIDDDDEVP 360
+ K ++ V ++ L E L+ S + ++++ L + +D+ +
Sbjct: 537 ---NDPKYERLVNAILDFLPKIEENLICSKYT------------DLLRIAL-MAEDEAIF 580
Query: 361 AEASKAAD 368
EA K
Sbjct: 581 EEAHKQVQ 588
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae
PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas
oryzae PV}
Length = 171
Score = 33.6 bits (78), Expect = 0.051
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 301 LRQKAD--ADKNDKAVKDLVMLLFETALLSSGFGLEDPQVHAARIH-RMIKLGLGIDDDD 357
L + A + + LV +FET + G GL PQ+ + +++ G + +
Sbjct: 13 LLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIA---VDLQLMV--FGFEASE 67
Query: 358 EVPAEASKAADVDITPV-DGDSEDASRMEE 386
P + + S++ E
Sbjct: 68 RYPEAPAVPLTALANAQIEPLSDEMENGWE 97
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 32.1 bits (72), Expect = 0.31
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 36/139 (25%)
Query: 40 FYSNKEIF------------LRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDK 87
F N E+ +RELI NS DA TD + ++ I +I D
Sbjct: 16 FKRNPELAGFPNPARALYQTVRELIENSLDA---------TDVHGILPNIKITIDLIDDA 66
Query: 88 ESR-TLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL 146
+ ++D+GIG+ ++ N G + S + G +G+G +A L
Sbjct: 67 RQIYKVNVVDNGIGIPPQEVPNAFGRVLYSS---------KYVNRQTRGMYGLGVKAAVL 117
Query: 147 VAD-----KVTVHSKHNDD 160
+ + + + +
Sbjct: 118 YSQMHQDKPIEIETSPVNS 136
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD
protease, aspartyl protease, intramembrane proteolysis;
3.60A {Methanococcus maripaludis}
Length = 237
Score = 30.8 bits (69), Expect = 0.61
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 216 FIGYPIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPKIEDYGW 261
F G +K+ V KE+++ + ++ ++ED + W
Sbjct: 160 FFGEKMKVNVAKEQKRLIMGQNDKINFFPAADDEDFSKYSNNEEIW 205
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 30.9 bits (69), Expect = 0.74
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 48 LRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL 106
L EL NS +R R E ++ + KE ++ I D G G+ +
Sbjct: 258 LFELFKNS------MRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKI 310
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase;
2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB:
1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Length = 177
Score = 29.8 bits (68), Expect = 1.0
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 301 LRQKA----DADKNDKAVKDLVMLLFETALLSSGFGLEDPQVHAARIH-RMIKLGLGIDD 355
LR+ + + + K K L+ +F+T + G GL PQ+ I +++ +G ++
Sbjct: 13 LRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIG---ILKQIVVVGSEDNE 69
Query: 356 DDEVPAEASKAADV--DITPVDGDSEDASRMEE 386
+ + + ITP+ D+ E
Sbjct: 70 RYPGTPDVPERIILNPVITPLTKDTSG---FWE 99
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Length = 471
Score = 30.1 bits (67), Expect = 1.2
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 22/80 (27%)
Query: 40 FYSNKEIF------------LRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDK 87
F N E+ +RELI NS + TD + ++ I +I D
Sbjct: 17 FKRNPELAGFPNPARALYQTVRELIENS------LDA---TDVHGILPNIKITIDLIDDA 67
Query: 88 ESR-TLTIIDSGIGMTKADL 106
+ ++D+GIG+ ++
Sbjct: 68 RQIYKVNVVDNGIGIPPQEV 87
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 30.2 bits (68), Expect = 1.3
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 140 GFYSAYLVADKVTVHSKHNDDE-QYIWESSAGGSFTIKPDHGEQLGRGTK--MVLYIKED 196
G Y YL K +DD + A D + T M++YI+E
Sbjct: 256 GHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES 315
Query: 197 QAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEEKEKDKEE 247
+ + + + + + +++E+ E +K K+++E
Sbjct: 316 KLSEVLQAVTDHDIPQQ-------LVERLQEEKR------IEAQKRKERQE 353
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 29.9 bits (67), Expect = 1.4
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 140 GFYSAYLVADKVTVHSKHNDDE-QYIWESSAGGSFTIKPDHGEQLGRGTK--MVLYIKED 196
G Y YL K +DD + A D + T M++YI+E
Sbjct: 425 GHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES 484
Query: 197 QAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEEKEKDKEE 247
+ + + + + + +++E+ E +K K+++E
Sbjct: 485 KLSEVLQAVTDHDIPQQ-------LVERLQEEKR------IEAQKRKERQE 522
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 29.5 bits (66), Expect = 1.7
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 226 EKEREKELEEDEEEEKEKDKEENEDDKTPKIEDYGWTA 263
+E E+++ E+ E+ ++E E+ + E W
Sbjct: 207 PEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAE 244
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase;
transferase, mitochondrial protein kinase, potassium;
HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1
d.122.1.4 PDB: 1gjv_A 1gkx_A*
Length = 388
Score = 29.6 bits (66), Expect = 1.7
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 48 LRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL 106
L EL+ N+ A + ++ + ++ I I + + I D G G+ DL
Sbjct: 243 LPELLKNAMRATMESHLDTPYNVP------DVVITIANNDVDLIIRISDRGGGIAHKDL 295
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL
ATPase/kinase family, pyruvate dehydrogenase complex,
mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens}
PDB: 2q8f_A* 2q8h_A
Length = 407
Score = 29.4 bits (65), Expect = 2.5
Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 48 LRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLV 107
+ EL N+ +R ++ + +++ + E T+ + D G G+ +
Sbjct: 248 VFELFKNA------MRA-TMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKID 300
Query: 108 NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAD----KVTVHSK 156
+ + + FG G + L A + ++S
Sbjct: 301 R----LFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSL 349
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 28.3 bits (63), Expect = 3.7
Identities = 6/42 (14%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 220 PIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPKIEDYGW 261
+ + ++E++ + +EK++ + E E + Y +
Sbjct: 96 KMFDYFQLQKEQKKQL-TSQEKKQIRLEREKFEED----YKF 132
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic
ribosome,homology modeling,de novo modeling,ribos
proteins,novel ribosomal proteins; NMR {Saccharomyces
cerevisiae} PDB: 3izs_t
Length = 106
Score = 27.4 bits (60), Expect = 3.9
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 198 AEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEEKEKDKEENEDD 251
A+ L+ + +K+++ S P + + E + E+E+E+ KEE++DD
Sbjct: 46 AKALDGQNLKDLLVNFSAGAAAPAGVAGGVAGGEAGEAEAEKEEEEAKEESDDD 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 28.5 bits (64), Expect = 4.1
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 204 KKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPKIEDYGWTA 263
+I+E+ L E + +EL ++EEE++E++ E + E+
Sbjct: 323 DEIREVFSTR------GRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 376
Query: 264 NMERIMKAQ 272
+ + KA
Sbjct: 377 LADELSKAH 385
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 28.7 bits (64), Expect = 4.3
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 4/121 (3%)
Query: 265 MERIMKAQALRDTSTMGYMAA-KKHLEINPDHNIIETLRQKADADKNDKAVKDLVMLLFE 323
R AQ L + +A +E+ ++ + + D D A K L++ +
Sbjct: 557 FTRWEAAQTLYRRAVAANLATLSDGVELPKHEKLLAAVEKVISDDLLDNAFKALLLGVPS 616
Query: 324 TALLSSGFGLEDPQ-VHAARIHRMIKLGLGIDDDDEVPAEASKAADVDITPVDGDSEDAS 382
A L G DP H AR + L + + +AA + + E A
Sbjct: 617 EAELWDGAENIDPLRYHQAR--EALLDTLAVHFLPKWHELNRQAAKQENQSYEYSPEAAG 674
Query: 383 R 383
Sbjct: 675 W 675
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 27.6 bits (60), Expect = 5.2
Identities = 4/33 (12%), Positives = 24/33 (72%)
Query: 226 EKEREKELEEDEEEEKEKDKEENEDDKTPKIED 258
+++ +++ ++D+++++++++EE D+ + +
Sbjct: 50 DEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLRE 82
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 27.9 bits (63), Expect = 5.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 78 ELEIKIIPDKESRTLTIIDSGIGMTKADL 106
L++ + D + I D+G+GMTK L
Sbjct: 144 TLQVYVSIDNGRVLIRIADTGVGMTKEQL 172
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 27.9 bits (63), Expect = 5.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 225 VEKEREKELEEDEEEEKEKDKEENED 250
+ K+ E E ++E+ E+EK+ +E E
Sbjct: 252 ITKDFELEETDEEKAEREKEIKEYEP 277
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein;
structural genomics, unknown function, nysgxrc target
T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2
d.54.1.1
Length = 386
Score = 27.6 bits (62), Expect = 6.6
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 333 LEDPQVHAARIHRMIKLGLGIDDDDEVPAEASKAA-DVDITPVDG----DSEDASRMEEV 387
L+ Q+ + ++ +KL + D E A + ++ + VD D +++ +
Sbjct: 166 LKQVQLAVEKGYQRVKLKIRPGYDVEPVALIRQHFPNLPLM-VDANSAYTLADLPQLQRL 224
Query: 388 D 388
D
Sbjct: 225 D 225
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom
structural genomics consortium, SGC; HET: SEP; 2.08A
{Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Length = 268
Score = 27.5 bits (60), Expect = 6.6
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 181 EQLGRGTKMVLYIKEDQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEE 240
+ +G ++ + E + ++ V R +EE
Sbjct: 40 DMVGNYKDVIKVLTESSDFRDNSLI---------LLLAGSLRNRVTSIRNSLKSIKSQEE 90
Query: 241 KEKDKEENEDDKTPKIEDY 259
K + ++ ++ IED
Sbjct: 91 KLRKEKSLNNEFIQVIEDI 109
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 27.7 bits (62), Expect = 6.8
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 201 LEEKKIKE------IVKKHSQFIGYPIKLLVEKEREKELEEDEEEEKEKDKEENEDD 251
+E K K V + + +V K+ +E E+ +E +++ E ++D+
Sbjct: 201 HDEVKDKAFELELSWVGELTNGR----HEIVPKDIREEAEKYAKESLKEEDESDDDN 253
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6
sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB:
3usz_A 3f93_A 3f94_A 3ut0_A
Length = 822
Score = 28.1 bits (63), Expect = 7.0
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 108 NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 142
N + + +A+ AG D+ M+ + FY
Sbjct: 296 NAHKFVEGCDLEQCAQAINAGVDVIMVPEHFEAFY 330
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 27.8 bits (61), Expect = 7.2
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 201 LEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPKIEDYG 260
+E + K++++ Q GY + + +E +E+E + + + + D TP D+
Sbjct: 663 IENRSKKDLIQMLVQR-GYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFN 721
Query: 261 -------WTANMERIMKAQALRD 276
W+ E++ + RD
Sbjct: 722 YILNMSLWSLTKEKVEELIKQRD 744
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 27.7 bits (62), Expect = 7.5
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 95 IDSGIGMTKADLVNNLGT----IAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA 148
+ G + L+ + + +S T E L A + ++ + GVG + + A
Sbjct: 27 VRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDA 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 7.8
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 32/60 (53%)
Query: 308 DKNDKAVKDLVMLLFETALLSSGFGLEDPQVHAARIHRMIKLGLGIDDDDEVPAEASKAA 367
+K +A+K L + +L +++A DD PA A KA
Sbjct: 18 EK--QALKKL-----QASL----------KLYA---------------DDSAPALAIKAT 45
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 27.7 bits (62), Expect = 8.1
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 6/60 (10%)
Query: 194 KEDQAEYLEEKKIKEIVKKHSQFIGYPIKLL------VEKEREKELEEDEEEEKEKDKEE 247
Q L + E+ ++ F + + ELE ++ E
Sbjct: 949 ILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation,
transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A*
2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Length = 394
Score = 27.5 bits (60), Expect = 9.0
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 48 LRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL 106
L EL N+ +R ++ +++ + +E ++ + D G G+ +
Sbjct: 236 LFELFKNA------MRA-TVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKI 287
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 26.8 bits (60), Expect = 9.2
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 194 KEDQAEYLEEKKIKEIVKKHSQ 215
++AEY +KK+ K++S+
Sbjct: 138 SRNKAEY--DKKVLLQAKQYSK 157
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 27.4 bits (60), Expect = 9.3
Identities = 1/32 (3%), Positives = 4/32 (12%)
Query: 226 EKEREKELEEDEEEEKEKDKEENEDDKTPKIE 257
+ E+ +
Sbjct: 116 RTLTAVHDKILEDLVFPTEIVGKRVRYLVGGN 147
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 27.3 bits (60), Expect = 9.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 220 PIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPKIEDYGW 261
PI +REK+L +EEK+ KE+ + + E Y +
Sbjct: 106 PIYQWHLVQREKKLSR-TKEEKKAIKEKQDAEA----EPYRY 142
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 27.2 bits (61), Expect = 9.8
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 205 KIKEIVKKHSQFIGYPIKLLVEKERE-KELEEDEEEEKEKDKEENE-DDKTPKIED 258
++K ++++ I+ + KE +E E +E+ + E E + +++
Sbjct: 21 QMKNYGMEYAK-----IEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQ 71
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 27.2 bits (61), Expect = 9.9
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 95 IDSGIGMTKADLVNNLGT----IAKSGTKAFMEALQAGADISMIGQFGVG 140
+D ++K +L+N +G + +S TK + ++ G + +I + G+G
Sbjct: 29 VDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIG 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.354
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,994,759
Number of extensions: 386066
Number of successful extensions: 1432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1277
Number of HSP's successfully gapped: 150
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)