RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10019
(388 letters)
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId:
9615]}
Length = 227
Score = 234 bits (598), Expect = 1e-76
Identities = 118/224 (52%), Positives = 149/224 (66%), Gaps = 5/224 (2%)
Query: 21 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELE 80
E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +EL
Sbjct: 1 EKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELT 60
Query: 81 IKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG-----ADISMIG 135
+KI DKE L + D+G+GMT+ +LV NLGTIAKSGT F+ + + +IG
Sbjct: 61 VKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIG 120
Query: 136 QFGVGFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLGRGTKMVLYIKE 195
QFGVGFYSA+LVADKV V SKHN+D Q+IWES + I G LGRGT + L +KE
Sbjct: 121 QFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKE 180
Query: 196 DQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEE 239
+ ++YLE IK +VKK+SQFI +PI + K + E
Sbjct: 181 EASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWE 224
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 231 bits (591), Expect = 8e-76
Identities = 177/208 (85%), Positives = 196/208 (94%)
Query: 20 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKEL 79
VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS+L+S KEL
Sbjct: 1 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKEL 60
Query: 80 EIKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGV 139
I +IP+K+ RTLTI+D+GIGMTKADL+NNLGTIAKSGTKAFMEALQAGADISMIGQFGV
Sbjct: 61 HINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGV 120
Query: 140 GFYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLGRGTKMVLYIKEDQAE 199
GFYSAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D GE +GRGTK++L++KEDQ E
Sbjct: 121 GFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTE 180
Query: 200 YLEEKKIKEIVKKHSQFIGYPIKLLVEK 227
YLEE++IKEIVKKHSQFIGYPI L VEK
Sbjct: 181 YLEERRIKEIVKKHSQFIGYPITLFVEK 208
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 213
Score = 227 bits (579), Expect = 6e-74
Identities = 152/211 (72%), Positives = 182/211 (86%), Gaps = 1/211 (0%)
Query: 21 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSRLESKKELE 80
ETF FQAEI QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+SL+DP +LE++ +L
Sbjct: 3 ETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLF 62
Query: 81 IKIIPDKESRTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVG 140
I+I P E + L I DSGIGMTKA+L+NNLGTIAKSGTKAFMEAL AGAD+SMIGQFGVG
Sbjct: 63 IRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVG 122
Query: 141 FYSAYLVADKVTVHSKHNDDEQYIWESSAGGSFTIKPDH-GEQLGRGTKMVLYIKEDQAE 199
FYS +LVAD+V V SK NDDEQYIWES+AGGSFT+ D E++GRGT + L++K+DQ E
Sbjct: 123 FYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLE 182
Query: 200 YLEEKKIKEIVKKHSQFIGYPIKLLVEKERE 230
YLEEK+IKE++K+HS+F+ YPI+L+V KE E
Sbjct: 183 YLEEKRIKEVIKRHSEFVAYPIQLVVTKEVE 213
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 78.8 bits (194), Expect = 1e-18
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 253 TPKIEDYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHNIIETLRQKADADKNDK 312
+ + M ++ A K E+NPDH ++ ++A +++
Sbjct: 29 IVSTDADEMSTQMAKLFAAAG------QKVPEVKYIFELNPDHVLV----KRAADTEDEA 78
Query: 313 AVKDLVMLLFETALLSSGFGLEDPQVHAARIHRMI 347
+ V LL + ALL+ LEDP + R+++++
Sbjct: 79 KFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 113
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 36.0 bits (82), Expect = 0.004
Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 52/240 (21%)
Query: 40 FYSNKEIF------------LRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDK 87
F N E+ +RELI NS DA TD + ++ I +I D
Sbjct: 7 FKRNPELAGFPNPARALYQTVRELIENSLDA---------TDVHGILPNIKITIDLIDDA 57
Query: 88 ESR-TLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL 146
+ ++D+GIG+ ++ N G + S + G +G+G +A L
Sbjct: 58 RQIYKVNVVDNGIGIPPQEVPNAFGRVLYS---------SKYVNRQTRGMYGLGVKAAVL 108
Query: 147 VAD-----KVTVHSKHNDDEQYIWESSAGGSFTIKPDHGEQLGRGTKMVLY------IKE 195
+ + + + + ++ I+ + G + I
Sbjct: 109 YSQMHQDKPIEIETSPVNSKR-IYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISI 167
Query: 196 DQAEYLEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPK 255
+ +I E +K+ ++ E ++ E + N+ K P+
Sbjct: 168 PGDWPKAKSRIYEYIKRTY---------IITPYAEFIFKDPEGNVTYYPRLTNKIPKPPQ 218
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 34.0 bits (77), Expect = 0.017
Identities = 23/175 (13%), Positives = 49/175 (28%), Gaps = 29/175 (16%)
Query: 48 LRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADLV 107
++EL+ NS DA +++K + D + + D+G G+ + +
Sbjct: 11 VKELVENSLDA----------------GATNIDLK-LKDYGVDLIEVSDNGCGVEEENFE 53
Query: 108 NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKHNDDEQYIWES 167
S + F + Q G G S ++D +
Sbjct: 54 GLTLKHHTSKIQEFADLTQVET----FGFRGEALSSLCALSDVTISTCHASAKVGTRLMF 109
Query: 168 SAGGSFTIKPDHGEQLGRGTKMVLYIKEDQAEY--------LEEKKIKEIVKKHS 214
G K + G + + E K+ +++ +
Sbjct: 110 DHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYC 164
>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 28.0 bits (63), Expect = 0.51
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 201 LEEKKIKEIVKKHSQFIGYPIKLLVEKE 228
L E++ + + +K +++IG ++LLV++
Sbjct: 4 LTEEETRVMFEKIAKYIGENLQLLVDRP 31
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.9 bits (65), Expect = 0.87
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 220 PIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPKIEDYGW 261
+ + + E + +EEK K KEENE YG+
Sbjct: 104 QMSQYFKAQTEARKQM-SKEEKLKIKEENEKLLKE----YGF 140
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 190
Score = 28.1 bits (62), Expect = 1.2
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 48 LRELISNSSDALDKIRYESLTDPSRLESKKELEIKIIPDKESRTLTIIDSGIGMTKADL 106
L EL N+ A + SLT P ++I + +E ++ + D G G+ +
Sbjct: 65 LFELFKNAMRATVESHESSLTLP-------PIKIMVALGEEDLSIKMSDRGGGVPLRKI 116
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.1 bits (63), Expect = 1.5
Identities = 6/42 (14%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 220 PIKLLVEKEREKELEEDEEEEKEKDKEENEDDKTPKIEDYGW 261
+ + ++E++ + +EK++ + E E + Y +
Sbjct: 96 KMFDYFQLQKEQKKQL-TSQEKKQIRLEREKFEED----YKF 132
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 28.1 bits (62), Expect = 1.8
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 220 PIKLLVEKEREKELEEDEEEEKEKDKEE 247
I++L +KE E+ +++ EEEE + ++E+
Sbjct: 223 VIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 27.0 bits (59), Expect = 3.4
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 299 ETLRQKADADKNDKAVKDLVMLLFETALLSSGFGLEDPQVHAARIHRMIKLGLGIDDDDE 358
LR+KA ++ +K L + ET + G GL PQ+ ++ + + +E
Sbjct: 11 PVLRRKARPVEDFSGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEE 70
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
EnvZ {Escherichia coli [TaxId: 562]}
Length = 161
Score = 26.0 bits (57), Expect = 5.4
Identities = 3/32 (9%), Positives = 9/32 (28%)
Query: 75 SKKELEIKIIPDKESRTLTIIDSGIGMTKADL 106
+++ + + D G G+
Sbjct: 63 GNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQR 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.354
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,416,459
Number of extensions: 69809
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 50
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.9 bits)