BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1002
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZD2|A Chain A, D202k Mutant Of P. Denitrificans Atp12p
pdb|2ZD2|B Chain B, D202k Mutant Of P. Denitrificans Atp12p
Length = 234
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 28 KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
K +RF+ VGI + G + + LD R L+TP ++ +E LALAIA EW A E I +
Sbjct: 4 KARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPN 63
Query: 88 TMHLTAICNTVIDNPNRLTKFDLVQNII-NFLDTDTILYHAN 128
M LT N+ I+ +FD V ++ ++ TD + Y A+
Sbjct: 64 AMPLTRSANSAIE--KVAPQFDAVAAMLGDYGGTDLLSYRAD 103
>pdb|2P4X|A Chain A, Crystal Structure Of Atp12 From Paracoccus Denitrificans
pdb|2P4X|B Chain B, Crystal Structure Of Atp12 From Paracoccus Denitrificans
pdb|2R31|A Chain A, Crystal Structure Of Atp12p From Paracoccus Denitrificans
Length = 239
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 28 KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
K +RF+ VGI + G + + LD R L+TP ++ +E LALAIA EW A E I +
Sbjct: 8 KARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPN 67
Query: 88 TMHLTAICNTVIDNPNRLTKFDLVQNII-NFLDTDTILYHAN 128
M LT N+ I+ +FD V ++ ++ TD + Y A+
Sbjct: 68 AMPLTRSANSAIE--KVAPQFDAVAAMLGDYGGTDLLSYRAD 107
>pdb|2R6I|A Chain A, Crystal Structure Of Atu1473 Protein, A Putative Chaperone
From Agrobacterium Tumefaciens
pdb|2R6I|B Chain B, Crystal Structure Of Atu1473 Protein, A Putative Chaperone
From Agrobacterium Tumefaciens
Length = 284
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 29 PKRFYKKVGILE-SNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
PKRFYK V + + G + I LD + L+TP S LA + EWDAQ E +
Sbjct: 51 PKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNPV 110
Query: 88 TMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
++ NT ID T+ + ++I+ F +D + Y A
Sbjct: 111 VXPVSRHVNTAIDGIASDTQA-VFEDILRFSSSDLLCYRAG 150
>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase
pdb|3ZUT|B Chain B, The Structure Of Ost1 (D160a) Kinase
Length = 362
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 13 RLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFK-VSSEPLAL 71
RL+ QS + A++ +R K ++ N EI ++HR L+ PN V FK V P L
Sbjct: 36 RLMRDKQSNELVAVKYIERGEK----IDENVKREI-INHRSLRHPNIVRFKEVILTPTHL 90
Query: 72 AIAAEWDAQHETIQRSTMHLTAICNT 97
AI E+ + E +R ICN
Sbjct: 91 AIVMEYASGGELFER-------ICNA 109
>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 361
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 13 RLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFK-VSSEPLAL 71
RL+ QS + A++ +R K ++ N EI ++HR L+ PN V FK V P L
Sbjct: 35 RLMRDKQSNELVAVKYIERGEK----IDENVKREI-INHRSLRHPNIVRFKEVILTPTHL 89
Query: 72 AIAAEWDAQHETIQRSTMHLTAICNT 97
AI E+ + E +R ICN
Sbjct: 90 AIVMEYASGGELFER-------ICNA 108
>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
pdb|3ZUU|B Chain B, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
Length = 362
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 13 RLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFK-VSSEPLAL 71
RL+ QS + A++ +R K ++ N EI ++HR L+ PN V FK V P L
Sbjct: 36 RLMRDKQSNELVAVKYIERGEK----IDENVKREI-INHRSLRHPNIVRFKEVILTPTHL 90
Query: 72 AIAAEWDAQHETIQRSTMHLTAICNT 97
AI E+ + E +R ICN
Sbjct: 91 AIVMEYASGGELFER-------ICNA 109
>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
Length = 362
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 13 RLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFK-VSSEPLAL 71
RL+ QS + A++ +R K + +N EI ++HR L+ PN V FK V P L
Sbjct: 36 RLMRDKQSNELVAVKYIERGEK----IAANVKREI-INHRSLRHPNIVRFKEVILTPTHL 90
Query: 72 AIAAEWDAQHETIQRSTMHLTAICNT 97
AI E+ + E +R ICN
Sbjct: 91 AIVMEYASGGELFER-------ICNA 109
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 31 RFYKKVGILESNGDYEISLDHRKLKTPNGVLFK-VSSEPLALAIAAEWDAQHETIQRSTM 89
++ ++ ++ N EI ++HR L+ PN V FK V P LAI E+ + E +R
Sbjct: 51 KYIERGAAIDENVQREI-INHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYER--- 106
Query: 90 HLTAICNT 97
ICN
Sbjct: 107 ----ICNA 110
>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6
pdb|3UDB|B Chain B, Crystal Structure Of Snrk2.6
pdb|3UDB|C Chain C, Crystal Structure Of Snrk2.6
pdb|3UDB|D Chain D, Crystal Structure Of Snrk2.6
pdb|3UDB|E Chain E, Crystal Structure Of Snrk2.6
pdb|3UDB|F Chain F, Crystal Structure Of Snrk2.6
Length = 317
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 13 RLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFK-VSSEPLAL 71
RL+ Q+ + A++ +R K ++ N EI ++HR L+ PN V FK V P L
Sbjct: 36 RLMRDKQANELVAVKYIERGEK----IDENVKREI-INHRSLRHPNIVRFKEVILTPTHL 90
Query: 72 AIAAEWDAQHETIQRSTMHLTAICNT 97
AI E+ + E +R ICN
Sbjct: 91 AIVMEYASGGELFER-------ICNA 109
>pdb|2JGP|A Chain A, Structure Of The Tycc5-6 Pcp-C Bidomain Of The Tyrocidine
Synthetase Tycc
Length = 520
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 62 FKVSSEPLALAIAAEWDAQ---HETIQRSTMHLTAICNTVIDNPN-RLTKFDLV 111
F + E + I E+ ET++R + H I +++ NP+ RL + D++
Sbjct: 467 FSATEEREEMTIGVEYSTSLFTRETMERFSRHFLTIAASIVQNPHIRLGEIDML 520
>pdb|1LNU|B Chain B, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|D Chain D, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|F Chain F, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|H Chain H, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|3C5Z|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C60|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C6L|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 217
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 69 LALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQ--NIINFLDTDTILYH 126
L A W++Q E ++R+ L +C + P T ++ N++ L L H
Sbjct: 79 LGRPDAEYWNSQPEILERTRAELDTVCRHNYEGPETHTSLRRLEQPNVVISLSRTEALNH 138
Query: 127 AN 128
N
Sbjct: 139 HN 140
>pdb|3RDT|D Chain D, Crystal Structure Of 809.B5 Tcr Complexed With Mhc Class
Ii I-Ab3K Peptide
Length = 217
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 69 LALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQ--NIINFLDTDTILYH 126
L A W++Q E ++R+ L +C + P T ++ N++ L L H
Sbjct: 79 LGRPDAEYWNSQPEILERTRAELDTVCRHNYEGPETHTSLRRLEQPNVVISLSRTEALNH 138
Query: 127 AN 128
N
Sbjct: 139 HN 140
>pdb|1MUJ|B Chain B, Crystal Structure Of Murine Class Ii Mhc I-Ab In Complex
With A Human Clip Peptide
Length = 197
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 69 LALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQ--NIINFLDTDTILYH 126
L A W++Q E ++R+ L +C + P T ++ N++ L L H
Sbjct: 53 LGRPDAEYWNSQPEILERTRAELDTVCRHNYEGPETHTSLRRLEQPNVVISLSRTEALNH 112
Query: 127 AN 128
N
Sbjct: 113 HN 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,811,867
Number of Sequences: 62578
Number of extensions: 134196
Number of successful extensions: 428
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 13
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)