BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1002
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LZ96|ATPF2_BOVIN ATP synthase mitochondrial F1 complex assembly factor 2 OS=Bos
taurus GN=ATPAF2 PE=2 SV=1
Length = 289
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 12 PRLINSIQSCKYSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLAL 71
P+L I++ Y + KRFY+ V I + G +EI+LDHRKL+TP G LF V SE LA+
Sbjct: 31 PKLPTPIRA--YVPPAERKRFYQNVSISQGEGGFEINLDHRKLRTPQGKLFTVPSEALAI 88
Query: 72 AIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
A+A EWD+Q +TI+ TMHLT +CNT +DNP + K L++ + FLDTDT+ Y
Sbjct: 89 AVATEWDSQQDTIKMYTMHLTTLCNTSLDNPTQRDKDQLIRAAVKFLDTDTVCYRVE 145
>sp|Q8N5M1|ATPF2_HUMAN ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo
sapiens GN=ATPAF2 PE=1 SV=1
Length = 289
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 72/103 (69%)
Query: 23 YSALEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHE 82
Y+ + KRFY+ V I + G +EI+LDHRKLKTP LF V SE LA+A+A EWD+Q +
Sbjct: 40 YAPPTERKRFYQNVSITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQD 99
Query: 83 TIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILY 125
TI+ TMHLT +CNT +DNP + K L++ + FLDTDTI Y
Sbjct: 100 TIKYYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICY 142
>sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex assembly factor 2 OS=Mus
musculus GN=Atpaf2 PE=2 SV=1
Length = 289
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 70/99 (70%)
Query: 30 KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 89
KRFY+ V I + G +EI+LDHRKLKTP LF V SE LA+A+A EWD+Q +TI+ TM
Sbjct: 47 KRFYQNVSISQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKFYTM 106
Query: 90 HLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
HLT +CNT +DNP + +K L++ + FLDTDTI Y
Sbjct: 107 HLTTLCNTSLDNPTQRSKDQLIRAAVKFLDTDTICYRVE 145
>sp|Q9UT16|ATP12_SCHPO Protein atp12, mitochondrial OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=atp12 PE=3 SV=2
Length = 291
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 24 SALEKP--KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALA--IAAEWDA 79
S L +P +RF+K NG+ I LD R LK+P+G + KV E LA IA EWD
Sbjct: 31 SPLPQPSFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDR 90
Query: 80 QHET-IQRSTMHLTAICNTVIDNPN--RLTKFDLVQNIINFLDTDTILYHA 127
T +++ + +T++ + ID + K L +I FLDTDTIL ++
Sbjct: 91 LPSTSVRQHNLPITSLVSRAIDISQFKKEEKELLSTQLIRFLDTDTILIYS 141
>sp|Q02066|AAIP_WHEAT Abscisic acid-inducible protein kinase (Fragment) OS=Triticum
aestivum PE=2 SV=1
Length = 332
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 49 LDHRKLKTPNGVLFK-VSSEPLALAIAAEWDAQHETIQRSTMHLTAICNT 97
++HR LK PN + FK V P LAI E+ + E QR ICN
Sbjct: 40 MNHRSLKHPNIIRFKEVVLTPTHLAIVMEYASGGELFQR-------ICNA 82
>sp|A2YNT8|SAPK2_ORYSI Serine/threonine-protein kinase SAPK2 OS=Oryza sativa subsp.
indica GN=SAPK2 PE=2 SV=2
Length = 339
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 31 RFYKKVGILESNGDYEISLDHRKLKTPNGVLFK-VSSEPLALAIAAEWDAQHETIQR 86
+F ++ ++ N EI ++HR L+ PN V FK V P LAI E+ A E +R
Sbjct: 33 KFIERGQKIDENVQREI-MNHRSLRHPNIVRFKEVVLTPTHLAIVMEYAAGGELFER 88
>sp|Q75LR7|SAPK1_ORYSJ Serine/threonine-protein kinase SAPK1 OS=Oryza sativa subsp.
japonica GN=SAPK1 PE=1 SV=1
Length = 342
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 49 LDHRKLKTPNGVLFK-VSSEPLALAIAAEWDAQHETIQRSTMHLTAICNT 97
++HR LK PN + FK V P LAI E+ A E +R ICN
Sbjct: 50 MNHRSLKHPNIIRFKEVVLTPTHLAIVMEYAAGGELFER-------ICNA 92
>sp|Q0D4J7|SAPK2_ORYSJ Serine/threonine-protein kinase SAPK2 OS=Oryza sativa subsp.
japonica GN=SAPK2 PE=1 SV=1
Length = 339
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 31 RFYKKVGILESNGDYEISLDHRKLKTPNGVLFK-VSSEPLALAIAAEWDAQHETIQR 86
+F ++ ++ N EI ++HR L+ PN V FK V P LAI E+ A E +R
Sbjct: 33 KFIERGQKIDENVQREI-MNHRSLRHPNIVRFKEVVLTPTHLAIVMEYAAGGELFER 88
>sp|P43291|SRK2A_ARATH Serine/threonine-protein kinase SRK2A OS=Arabidopsis thaliana
GN=SRK2A PE=1 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 49 LDHRKLKTPNGVLFK-VSSEPLALAIAAEWDAQHETIQR 86
++HR L+ PN + FK V P LAIA E+ A E +R
Sbjct: 50 INHRSLRHPNIIRFKEVVLTPTHLAIAMEYAAGGELFER 88
>sp|B2C4J3|L_CHAVB RNA-directed RNA polymerase L OS=Chapare virus (isolate
Human/Bolivia/810419/2003) GN=L PE=3 SV=1
Length = 2208
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 1 MFVGKQTTMRYPRLINSIQ-----SCKYSALEKPKRFYKKVGILE---SNGDYEISLDHR 52
++VG T RL+ S +YS L K F + + ++ +NGD +SLDH
Sbjct: 1130 LYVGDLNTKLMTRLVEDFSEMITSSMRYSCLNSEKEFERAICDMKMAVNNGDISMSLDHS 1189
Query: 53 K 53
K
Sbjct: 1190 K 1190
>sp|Q6UY61|L_SABVB RNA-directed RNA polymerase L OS=Sabia virus (isolate
Human/Brasil/SPH114202/1990) GN=L PE=3 SV=1
Length = 2212
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1 MFVGKQTTMRYPRLINSIQ-----SCKYSALEKPKRFYKKVGILE---SNGDYEISLDHR 52
++VG T RL+ S ++S L K F + + ++ +NGD+ +S+DH
Sbjct: 1134 LYVGDLNTKLMTRLVEDFSEVVTGSMRFSCLNSEKEFERAICDMKMAVNNGDFSLSMDHS 1193
Query: 53 K 53
K
Sbjct: 1194 K 1194
>sp|Q9R9J1|MYCA_BACIU Mycosubtilin synthase subunit A OS=Bacillus subtilis GN=mycA PE=3
SV=1
Length = 3971
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 73 IAAEWDAQHETIQRSTMHLTAICNTVIDN---PNRLTKFDLVQNIINFLDTDTILYHANF 129
+ AE + +E + + T +L N+ + P R+ +F + ++ +D D YH N+
Sbjct: 1823 LQAEGETLYERLNQKTTYLVDQLNSYFEQSQVPIRMVQFGSLFRFVSSVDNDLFFYHLNY 1882
Query: 130 FLRKGVF 136
KGV+
Sbjct: 1883 ---KGVY 1886
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,926,082
Number of Sequences: 539616
Number of extensions: 1720708
Number of successful extensions: 4464
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4458
Number of HSP's gapped (non-prelim): 16
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)