Query psy1002
Match_columns 136
No_of_seqs 114 out of 377
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 15:48:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r31_A ATP12 ATPase; chaperone 100.0 1.1E-44 3.8E-49 294.0 7.8 104 27-131 7-110 (239)
2 2r6i_A AGR_C_2717P, uncharacte 100.0 1.1E-43 3.8E-48 294.6 7.7 104 27-131 49-153 (284)
3 3awu_B MELC; tyrosinase, binar 44.7 7.2 0.00025 29.0 1.1 47 43-91 70-127 (134)
4 2ojl_A Hypothetical protein; B 32.0 26 0.00089 24.8 2.3 40 33-76 40-84 (108)
5 2oka_A Hypothetical protein; P 32.0 26 0.0009 24.5 2.3 37 35-75 39-80 (104)
6 2p0g_A Selenoprotein W-related 30.7 28 0.00095 24.4 2.2 37 34-74 36-77 (105)
7 3dex_A SAV_2001; alpha-beta pr 27.6 34 0.0011 24.2 2.2 39 34-74 45-85 (107)
8 2fa8_A Hypothetical protein AT 26.2 38 0.0013 23.7 2.3 40 35-75 41-82 (105)
9 2ljk_A Protein C17ORF37; MIEN1 23.9 47 0.0016 23.7 2.4 39 35-74 56-96 (117)
10 3pam_A Transmembrane protein; 23.4 31 0.0011 25.6 1.5 42 54-95 121-169 (259)
11 2o8m_C Protease; NS3, NS4A, vi 22.1 40 0.0014 18.4 1.3 17 46-62 10-26 (26)
12 2npb_A Selenoprotein W; struct 20.8 36 0.0012 23.3 1.3 13 42-54 45-57 (96)
No 1
>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A {Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A 2zd2_A
Probab=100.00 E-value=1.1e-44 Score=293.96 Aligned_cols=104 Identities=33% Similarity=0.487 Sum_probs=100.0
Q ss_pred CCCCccceeeeeEEeCCcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccCcCCCccchhhhhhhhhcCCCCCC
Q psy1002 27 EKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLT 106 (136)
Q Consensus 27 ~~~kRFyK~v~V~~~~gg~~V~LDgR~lkTP~g~~L~vPs~~LA~avA~EW~~Q~e~I~p~~MPLT~La~tAID~~~~~~ 106 (136)
..+|||||+|+|.+.+|||.|+||||+||||+|++|+|||++||++||+||++|++.|+|++||||+|||||||++.. +
T Consensus 7 ~~~kRFyk~v~v~~~~gg~~V~LDgR~lkTP~~~~L~vPs~~LA~aiA~EW~~Q~~~I~p~~MPlT~La~tAiD~~~~-~ 85 (239)
T 2r31_A 7 WKARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPNAMPLTRSANSAIEKVAP-Q 85 (239)
T ss_dssp HHTBCCCSCEEEEEETTEEEEEETTEECBCTTSCBCCBSCHHHHHHHHHHHHTCCSBCCGGGCHHHHHHHHHHHTTGG-G
T ss_pred cccccceeeceEEecCCceEEEeCCCCCCCCCCCeeecCcHHHHHHHHHHHHHhhccCccCCCcHHHHHHHHHccCcc-c
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999999974 8
Q ss_pred HHHHHHHHHhhhCCCeEEEeecCcc
Q psy1002 107 KFDLVQNIINFLDTDTILYHANFFL 131 (136)
Q Consensus 107 r~~v~~~ll~Yl~TDtlcyra~~~~ 131 (136)
|+.++++|++|++||+||||+++++
T Consensus 86 r~~v~~~ll~y~~tD~l~yra~~p~ 110 (239)
T 2r31_A 86 FDAVAAMLGDYGGTDLLSYRADAPE 110 (239)
T ss_dssp HHHHHHHHHHGGGSCGGGEECCCCH
T ss_pred HHHHHHHHHHhcCCCeEEEecCCcH
Confidence 9999999999999999999998764
No 2
>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural genomics, APC6123, PSI-2, protein STRU initiative; 2.59A {Agrobacterium tumefaciens str} SCOP: d.381.1.1
Probab=100.00 E-value=1.1e-43 Score=294.59 Aligned_cols=104 Identities=32% Similarity=0.485 Sum_probs=100.0
Q ss_pred CCCCccceeeeeEEeC-CcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccCcCCCccchhhhhhhhhcCCCCC
Q psy1002 27 EKPKRFYKKVGILESN-GDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRL 105 (136)
Q Consensus 27 ~~~kRFyK~v~V~~~~-gg~~V~LDgR~lkTP~g~~L~vPs~~LA~avA~EW~~Q~e~I~p~~MPLT~La~tAID~~~~~ 105 (136)
..+|||||+|+|.+.+ |||+|+||||+||||+|++|+|||++||.+||+||++|++.|+|++||||+|||||||++.+
T Consensus 49 ~~~KRFyK~v~V~~~~~gg~~V~LDgR~lKTP~k~~L~vPs~~LA~aIA~EW~aQ~e~I~p~~MPLT~La~tAID~~~~- 127 (284)
T 2r6i_A 49 PLPKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNPVVMPVSRHVNTAIDGIAS- 127 (284)
T ss_dssp TSCBCCCSCEEEEECTTSCEEEEETTEECBCTTSCBCCBSSHHHHHHHHHHHHTCSSBCCGGGCHHHHHHHHHHHTTGG-
T ss_pred hhcccceeeceeEEcCCCCeEEEeCCCcCCCCCCCeeecCcHHHHHHHHHHHHhhhccCccCCCcHHHHHHHHHccCcc-
Confidence 4679999999999998 99999999999999999999999999999999999999999999999999999999999976
Q ss_pred CHHHHHHHHHhhhCCCeEEEeecCcc
Q psy1002 106 TKFDLVQNIINFLDTDTILYHANFFL 131 (136)
Q Consensus 106 ~r~~v~~~ll~Yl~TDtlcyra~~~~ 131 (136)
+|+.++++|++|++||+||||++.++
T Consensus 128 ~r~~v~~~ll~yl~tDtlcyra~~p~ 153 (284)
T 2r6i_A 128 DTQAVFEDILRFSSSDLLCYRAGDPE 153 (284)
T ss_dssp GHHHHHHHHHHHHHTCTTTEECCCCH
T ss_pred hHHHHHHHHHHhcCCceEEEeCCCcH
Confidence 89999999999999999999998764
No 3
>3awu_B MELC; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 3awt_B 3aws_B 3awv_B 3aww_B 3ax0_B 3awy_B 3awz_B 3awx_B 1wxc_B 1wx2_B 1wx4_B 1wx5_B 1wx3_B 2ahk_B 2ahl_B 2zmx_B 2zmy_B 2zmz_B 2zwd_B 2zwe_B* ...
Probab=44.74 E-value=7.2 Score=28.97 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=28.1
Q ss_pred CcEEEEeCCCcCCCC---CCCeee-------eCc-HHHHHHHHHHHhhcccCcCCCccch
Q psy1002 43 GDYEISLDHRKLKTP---NGVLFK-------VSS-EPLALAIAAEWDAQHETIQRSTMHL 91 (136)
Q Consensus 43 gg~~V~LDgR~lkTP---~g~~L~-------vPs-~~LA~avA~EW~~Q~e~I~p~~MPL 91 (136)
++|.|.+|||+|.-. .|.-|+ +|+ .++|.+.-.|-. +-.+.|.+++|
T Consensus 70 ~~~~V~IDGRpLhvMr~AdGs~lS~v~HYes~pTPl~AARaAVdEL~--gA~L~p~~~~~ 127 (134)
T 3awu_B 70 GGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDELQ--GAPLLPFPANL 127 (134)
T ss_dssp CSEEEEETTEEECEEECTTSCEEETTEEEEEESSHHHHHHHHHHHHT--TCCBCCC----
T ss_pred CceEEEecCeecceeeccCCcEecceeccCCCCCHHHHHHHHHHHhc--cccccCCCCcc
Confidence 579999999988544 355554 344 356666666654 55666666655
No 4
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=32.00 E-value=26 Score=24.82 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=25.7
Q ss_pred ceeeeeEEeCCc-EEEEeCCCcC---CCCCCCeeeeCc-HHHHHHHHHH
Q psy1002 33 YKKVGILESNGD-YEISLDHRKL---KTPNGVLFKVSS-EPLALAIAAE 76 (136)
Q Consensus 33 yK~v~V~~~~gg-~~V~LDgR~l---kTP~g~~L~vPs-~~LA~avA~E 76 (136)
..+|+..+..|| |.|.+||..| |.-+| .|. ++|-..|...
T Consensus 40 l~eV~L~P~~~G~FeV~vng~lVwsRk~~gg----FPe~keLkq~Vrd~ 84 (108)
T 2ojl_A 40 LGEVALVPGTGGVFRIHYNGAPLWDREVDGG----FPEAKVLKQRVRDH 84 (108)
T ss_dssp SSEEEEEEECTTCEEEEETTEEEEEHHHHCS----CCCHHHHHHHHHHH
T ss_pred cceEEEEeCCCceEEEEECCEEEEEEccCCC----CCCHHHHHHHHHHH
Confidence 457777776555 9999999877 32233 353 5666666553
No 5
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=31.97 E-value=26 Score=24.53 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=22.8
Q ss_pred eeeeEEeCCc-EEEEeCCCcC---CCCCCCeeeeCc-HHHHHHHHH
Q psy1002 35 KVGILESNGD-YEISLDHRKL---KTPNGVLFKVSS-EPLALAIAA 75 (136)
Q Consensus 35 ~v~V~~~~gg-~~V~LDgR~l---kTP~g~~L~vPs-~~LA~avA~ 75 (136)
+|+..+..+| |.|.+||..| |.-+| .|. ++|-..|..
T Consensus 39 ~v~l~P~~~G~FEV~vng~lV~SKk~~gg----FPe~~eLkq~Vrd 80 (104)
T 2oka_A 39 KVCLEPGTGGVFRITCDGVQVWERKADGG----FPEAKALKQRVRD 80 (104)
T ss_dssp EEEEEEECTTCEEEEETTEEEEEHHHHTS----CCCHHHHHHHHHH
T ss_pred eEEEEeCCCceEEEEECCEEEEEEecCCC----CCCHHHHHHHHHH
Confidence 5777776544 9999999876 22222 453 456555544
No 6
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=30.67 E-value=28 Score=24.44 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=22.9
Q ss_pred eeeeeEEeCCc-EEEEeCCCcC---CCCCCCeeeeCc-HHHHHHHH
Q psy1002 34 KKVGILESNGD-YEISLDHRKL---KTPNGVLFKVSS-EPLALAIA 74 (136)
Q Consensus 34 K~v~V~~~~gg-~~V~LDgR~l---kTP~g~~L~vPs-~~LA~avA 74 (136)
.+|+..+..+| |.|.+||..| +.-+| .|. ++|-..|.
T Consensus 36 ~~v~l~P~~~G~FEV~vng~lV~SKk~~gg----FPe~~eLkq~Vr 77 (105)
T 2p0g_A 36 EYVALHPDTGGRFEIFCNGVQIWERKQEGG----FPEAKVLKQRVR 77 (105)
T ss_dssp EEEEEEEESTTCEEEEETTEEEEEHHHHTS----CCCHHHHHHHHH
T ss_pred ceEEEEeCCCceEEEEECCEEEEEEecCCC----CCCHHHHHHHHH
Confidence 36676666544 9999999877 22223 453 55655554
No 7
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=27.59 E-value=34 Score=24.24 Aligned_cols=39 Identities=5% Similarity=0.138 Sum_probs=23.1
Q ss_pred eeeeeEEeCCc-EEEEeCCCcCCCCCCCeeeeC-cHHHHHHHH
Q psy1002 34 KKVGILESNGD-YEISLDHRKLKTPNGVLFKVS-SEPLALAIA 74 (136)
Q Consensus 34 K~v~V~~~~gg-~~V~LDgR~lkTP~g~~L~vP-s~~LA~avA 74 (136)
.+|+..+..+| |.|.+||..|=.-. .-..| +++|-..|.
T Consensus 45 ~eVsL~Pg~gG~FeV~vdg~lVwsRk--~gGFPd~keLkq~VR 85 (107)
T 3dex_A 45 TELALKPGTGGVFVVRVDDEVVWDRR--EQGFPEPTAVKRLVR 85 (107)
T ss_dssp EEEEEEEESSSCEEEEETTEEEEEHH--HHCSCCHHHHHHHHH
T ss_pred ceEEEEeCCCceEEEEECCEEEEEec--CCCCCCHHHHHHHHH
Confidence 45777776555 99999997553322 22345 345555554
No 8
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=26.20 E-value=38 Score=23.66 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=24.2
Q ss_pred eeeeEEeCC-cEEEEeCCCcCCCCCCCeeeeCc-HHHHHHHHH
Q psy1002 35 KVGILESNG-DYEISLDHRKLKTPNGVLFKVSS-EPLALAIAA 75 (136)
Q Consensus 35 ~v~V~~~~g-g~~V~LDgR~lkTP~g~~L~vPs-~~LA~avA~ 75 (136)
+|+..+..+ -|.|.+||..|-.-. +.-..|. ++|-..|..
T Consensus 41 ~V~l~P~~~G~FEV~vng~lV~SKk-~~ggFPe~~elkq~Vr~ 82 (105)
T 2fa8_A 41 EVSLIPSTGGLFEITVDGTIIWERK-RDGGFPGPKELKQRIRD 82 (105)
T ss_dssp EEEEEEECTTCEEEEETTEEEEEHH-HHTSCCCHHHHHHHHHH
T ss_pred eEEEEcCCCcEEEEEECCEEEEEec-cCCCCCCHHHHHHHHHH
Confidence 567666554 499999997763211 1122564 567666654
No 9
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=23.87 E-value=47 Score=23.67 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=20.8
Q ss_pred eeeeEEeC-CcEEEEeCCCcCCCCCCCeeeeCc-HHHHHHHH
Q psy1002 35 KVGILESN-GDYEISLDHRKLKTPNGVLFKVSS-EPLALAIA 74 (136)
Q Consensus 35 ~v~V~~~~-gg~~V~LDgR~lkTP~g~~L~vPs-~~LA~avA 74 (136)
+|...+.. |-|.|.+||..|-.-. ..-..|. ++|..+|.
T Consensus 56 ~V~l~pg~~G~FeV~v~g~li~sk~-~~g~FPe~~el~~~Vr 96 (117)
T 2ljk_A 56 EIESRLGGTGAFEIEINGQLVFSKL-ENGGFPYEKDLIEAIR 96 (117)
T ss_dssp CCEEEECSSSCEEEETTSSCCBCHH-HHCSCCCTTTTTHHHH
T ss_pred eEEEecCCCceEEEEECCEEEEEEc-cCCCCCCHHHHHHHHH
Confidence 34444544 4599999998663221 1112443 44555554
No 10
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=23.44 E-value=31 Score=25.63 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=26.9
Q ss_pred CCCCCCCeeee----Cc---HHHHHHHHHHHhhcccCcCCCccchhhhh
Q psy1002 54 LKTPNGVLFKV----SS---EPLALAIAAEWDAQHETIQRSTMHLTAIC 95 (136)
Q Consensus 54 lkTP~g~~L~v----Ps---~~LA~avA~EW~~Q~e~I~p~~MPLT~La 95 (136)
+|+|.|++|.+ ++ +.+|.+|++.|+..+=.++...++-..+.
T Consensus 121 ~~~~~G~~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~~~~~~~ 169 (259)
T 3pam_A 121 LIAPNGLPFQFEIMTQSLEEEKVALAFQSNLSRLGIHAEIRTVDDSQYQ 169 (259)
T ss_dssp EECTTSCBCEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHH
T ss_pred EECCCCcEEEEEEEeCCchHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence 45666655433 32 57999999999987645555555554443
No 11
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=22.15 E-value=40 Score=18.38 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=11.3
Q ss_pred EEEeCCCcCCCCCCCee
Q psy1002 46 EISLDHRKLKTPNGVLF 62 (136)
Q Consensus 46 ~V~LDgR~lkTP~g~~L 62 (136)
.|.|.||++-.|.+..|
T Consensus 10 ri~l~gkp~v~PdreVl 26 (26)
T 2o8m_C 10 RIVLSGKPAIIPKKXXX 26 (26)
T ss_dssp EEECSCCCEECCCC---
T ss_pred EEEECCceEEcCCcCCC
Confidence 57788888888877654
No 12
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=20.77 E-value=36 Score=23.28 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=11.0
Q ss_pred CCcEEEEeCCCcC
Q psy1002 42 NGDYEISLDHRKL 54 (136)
Q Consensus 42 ~gg~~V~LDgR~l 54 (136)
.|-|.|.+||..|
T Consensus 45 ~G~FEV~vng~lV 57 (96)
T 2npb_A 45 TGFFEVTVAGKLV 57 (96)
T ss_dssp CSCCEEEETTEEE
T ss_pred CcEEEEEECCEEE
Confidence 3559999999888
Done!