RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1002
         (136 letters)



>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A
           {Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A
           2zd2_A
          Length = 239

 Score =  108 bits (272), Expect = 1e-30
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 28  KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
           K +RF+  VGI +  G + + LD R L+TP     ++ +E LALAIA EW A  E I  +
Sbjct: 8   KARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPN 67

Query: 88  TMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHA 127
            M LT   N+ I+         +   + ++  TD + Y A
Sbjct: 68  AMPLTRSANSAIEKVAP-QFDAVAAMLGDYGGTDLLSYRA 106


>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural
           genomics, APC6123, PSI-2, protein STRU initiative; 2.59A
           {Agrobacterium tumefaciens str} SCOP: d.381.1.1
          Length = 284

 Score =  109 bits (273), Expect = 2e-30
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 28  KPKRFYKKVGILE-SNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQR 86
            PKRFYK V + +   G + I LD + L+TP        S  LA  +  EWDAQ E +  
Sbjct: 50  LPKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNP 109

Query: 87  STMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
             M ++   NT ID     T+  + ++I+ F  +D + Y A 
Sbjct: 110 VVMPVSRHVNTAIDGIASDTQ-AVFEDILRFSSSDLLCYRAG 150


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 42.6 bits (99), Expect = 5e-06
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 27/56 (48%)

Query: 30 KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQ 85
          K+  KK   L++      SL   KL   +       S P ALAI A       T++
Sbjct: 19 KQALKK---LQA------SL---KLYADD-------SAP-ALAIKA-------TME 47


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 26/122 (21%)

Query: 31  RFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEW------DAQHETI 84
           RF +    L +     ISLDH              +     ++  ++      D   E +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHS---------MTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 85  QRSTMHLTAICNTVIDNPNRLTKFD---------LVQNIINFLDTDTI--LYHANFFLRK 133
             +   L+ I  ++ D       +          ++++ +N L+      ++        
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 134 GV 135
             
Sbjct: 384 SA 385


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 2.2
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 17/51 (33%)

Query: 61   LFKVSSEPLALAIAAEWDAQHETIQRSTMHLT-----AICNTVIDNPNRLT 106
            L+K S    A  +   W+       R+  H       +I + VI+NP  LT
Sbjct: 1635 LYKTS--KAAQDV---WN-------RADNHFKDTYGFSILDIVINNPVNLT 1673


>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
           binding, X-linked agammaglobulinemia, tyrosine-protein
           kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
           2z0p_A* 1bwn_A*
          Length = 169

 Score = 26.4 bits (57), Expect = 2.7
 Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 8/109 (7%)

Query: 2   FVGKQTTMRYPRLINSIQSCKYSALE--KPKRFYKKVGILESNGDYEISLDHRKLKTPNG 59
           +       R      SI   K + +E   P++       +   G+    ++   +     
Sbjct: 39  YEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFP 98

Query: 60  VLFKVSSEPLALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKF 108
             F+V  +   L + +       T +     +  + N +  N + + K+
Sbjct: 99  YPFQVVYDEGPLYVFSP------TEELRKRWIHQLKNVIRYNSDLVQKY 141


>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO;
           HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
          Length = 714

 Score = 26.7 bits (59), Expect = 2.9
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 12/51 (23%)

Query: 79  AQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANF 129
            Q E I+ ST  +    N+V DNP       L+      +  +  ++  NF
Sbjct: 360 PQIEVIRSSTKMIEREINSVNDNP-------LI-----DVSRNKAIHGGNF 398


>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
           biosynthesis, condensatio domain, peptide bond
           formation, ligase; 1.85A {Brevibacillus brevis}
          Length = 520

 Score = 26.0 bits (58), Expect = 4.7
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 81  HETIQRSTMHLTAICNTVIDNPN-RLTKFDLV 111
            ET++R + H   I  +++ NP+ RL + D++
Sbjct: 489 RETMERFSRHFLTIAASIVQNPHIRLGEIDML 520


>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana
           var} PDB: 3nz4_A*
          Length = 705

 Score = 25.9 bits (57), Expect = 5.2
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 12/51 (23%)

Query: 79  AQHETIQRSTMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANF 129
              +TI+ +T  +    N+  DNP       ++         D  L+ ANF
Sbjct: 351 PLVQTIRDATTTVETEVNSANDNP-------II-----DHANDRALHGANF 389


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 25.5 bits (55), Expect = 7.3
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 71  LAIAAEWDAQHETIQRSTMHLTAI---CNTVIDNPNRLTK-----FDLVQNIINFLDTDT 122
           L IA E     E I        AI    N ++ + N          D +     F D  +
Sbjct: 164 LVIAYE---PFENI--------AIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAIS 212

Query: 123 ILYHANFFLRK 133
            LY+  FF ++
Sbjct: 213 KLYYVQFFFKQ 223


>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
           PDB: 3jwi_A
          Length = 219

 Score = 24.9 bits (54), Expect = 10.0
 Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 70  ALAIAAEWDAQHETIQRSTMHLTAICNTVIDNPNRLTKFDLV--QNIINFLDTDTI 123
            L  A +        +     ++   ++++    R + +D      +I  LD + +
Sbjct: 65  VLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRL 120


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,973,425
Number of extensions: 103631
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 18
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)