RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1002
         (136 letters)



>d2r31a1 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denitrificans
           [TaxId: 266]}
          Length = 233

 Score =  111 bits (279), Expect = 4e-32
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 28  KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
           K +RF+  VGI +  G + + LD R L+TP     ++ +E LALAIA EW A  E I  +
Sbjct: 3   KARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPN 62

Query: 88  TMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHANF 129
            M LT   N+ I+         +   + ++  TD + Y A+ 
Sbjct: 63  AMPLTRSANSAIEKVAP-QFDAVAAMLGDYGGTDLLSYRADA 103


>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 261

 Score =  111 bits (280), Expect = 6e-32
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 29  PKRFYKKVGILE-SNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 87
           PKRFYK V + +   G + I LD + L+TP        S  LA  +  EWDAQ E +   
Sbjct: 30  PKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNPV 89

Query: 88  TMHLTAICNTVIDNPNRLTKFDLVQNIINFLDTDTILYHAN 128
            M ++   NT ID     T+  + ++I+ F  +D + Y A 
Sbjct: 90  VMPVSRHVNTAIDGIASDTQ-AVFEDILRFSSSDLLCYRAG 129


>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
           (Petroselinum crispum), PAL1 [TaxId: 4043]}
          Length = 692

 Score = 26.1 bits (57), Expect = 1.8
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 14/87 (16%)

Query: 44  DYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWD-AQHETIQRSTMHLTAICNTVIDNP 102
                   +KL   + +      +  AL  + +W   Q E I+ ST  +    N+V DNP
Sbjct: 303 GSAYVKAAQKLHEMDPLQKPKQ-DRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNP 361

Query: 103 NRLTKFDLVQNIINFLDTDTILYHANF 129
                       +  +  +  ++  NF
Sbjct: 362 ------------LIDVSRNKAIHGGNF 376


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 485,633
Number of extensions: 19887
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 6
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)