BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10020
(640 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
EFVDYLK PE + LGAKVPKGALLLGPPGCGKTLLAKAVATEA VPFL+M G+EF+E+I
Sbjct: 20 EFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79
Query: 62 GGLGAARVRT 71
GGLGAARVR+
Sbjct: 80 GGLGAARVRS 89
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 58/70 (82%)
Query: 1 MEFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
+E VD+LK PE Y NLGAK+PKG LL+GPPG GKTLLAKAVA EA+VPF SM GS FIEM
Sbjct: 24 VEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83
Query: 61 IGGLGAARVR 70
GLGA+RVR
Sbjct: 84 FVGLGASRVR 93
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 8/90 (8%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
E V+YL+ P +Q LG K+PKG L++GPPG GKTLLAKA+A EA VPF +++GS+F+EM
Sbjct: 26 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85
Query: 62 GGLGAARVRTEVVFLH------CRVFLHEI 85
G+GA+RVR +F C +F+ EI
Sbjct: 86 VGVGASRVRD--MFEQAKKAAPCIIFIDEI 113
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 8/90 (8%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
E V++LK P + +GA++PKG LL+GPPG GKTLLA+AVA EANVPF ++GS+F+E+
Sbjct: 30 EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89
Query: 62 GGLGAARVRTEVVFLH------CRVFLHEI 85
G+GAARVR +F C VF+ EI
Sbjct: 90 VGVGAARVRD--LFAQAKAHAPCIVFIDEI 117
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 45/67 (67%), Gaps = 6/67 (8%)
Query: 485 TPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LY 543
+P+E+++ +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K L
Sbjct: 268 SPAEKRI-----IAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLV 322
Query: 544 NKEETLD 550
++ E LD
Sbjct: 323 SRNELLD 329
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 358 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEEIFSPID 416
R +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K L ++ E+ +
Sbjct: 273 RIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLT 332
Query: 417 TSRSHRVLRKWVLSSLLT 434
R + V + +
Sbjct: 333 ALLGGRAAEEVVFGDVTS 350
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 33/47 (70%)
Query: 444 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK 490
R +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K
Sbjct: 273 RIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDK 319
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIG 62
V++LK P + +GA++PKG LL+GPPG GKT LA+AVA EA VPF++ +GS+F+EM
Sbjct: 46 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105
Query: 63 GLGAARVRT--EVVFLH--CRVFLHEI 85
G+GAARVR E H C VF+ EI
Sbjct: 106 GVGAARVRDLFETAKRHAPCIVFIDEI 132
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 358 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDT 417
R A+HE+GHAL L H D + KVTIVPR ALGF + ++++ + I
Sbjct: 288 RITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGFMMPRREDMLHWSRKRLLDQIAV 346
Query: 418 SRSHRVLRKWVLSSLLT 434
+ + R + V + T
Sbjct: 347 ALAGRAAEEIVFDDVTT 363
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 444 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGF 481
R A+HE+GHAL L H D + KVTIVPR ALGF
Sbjct: 288 RITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGF 324
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 498 AFHESGHALVGWLLPHTDALLKVTIVPRTSLALGF 532
A+HE+GHAL L H D + KVTIVPR ALGF
Sbjct: 291 AYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGF 324
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIG 62
V++LK P + +GA++PKG LL+GPPG GKT LA+AVA EA VPF++ +GS+F+EM
Sbjct: 55 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114
Query: 63 GLGAARVRT--EVVFLH--CRVFLHEI 85
G+GAARVR E H C VF+ EI
Sbjct: 115 GVGAARVRDLFETAKRHAPCIVFIDEI 141
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 358 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDT 417
R A+HE+GHAL L H D + KVTIVPR ALGF + ++++ + I
Sbjct: 297 RITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGFMMPRREDMLHWSRKRLLDQIAV 355
Query: 418 SRSHRVLRKWVLSSLLT 434
+ + R + V + T
Sbjct: 356 ALAGRAAEEIVFDDVTT 372
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 444 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGF 481
R A+HE+GHAL L H D + KVTIVPR ALGF
Sbjct: 297 RITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGF 333
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 498 AFHESGHALVGWLLPHTDALLKVTIVPRTSLALGF 532
A+HE+GHAL L H D + KVTIVPR ALGF
Sbjct: 300 AYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGF 333
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 63/90 (70%), Gaps = 8/90 (8%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
E V++LK P + +GA++PKG LL+GPPG G TLLA+AVA EANVPF ++GS+F+E+
Sbjct: 30 EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELF 89
Query: 62 GGLGAARVRTEVVFLH------CRVFLHEI 85
G+GAARVR +F C VF+ EI
Sbjct: 90 VGVGAARVRD--LFAQAKAHAPCIVFIDEI 117
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 45/67 (67%), Gaps = 6/67 (8%)
Query: 485 TPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LY 543
+P+E+++ +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K L
Sbjct: 268 SPAEKRI-----IAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLV 322
Query: 544 NKEETLD 550
++ E LD
Sbjct: 323 SRNELLD 329
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 358 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEEIFSPID 416
R +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K L ++ E+ +
Sbjct: 273 RIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLT 332
Query: 417 TSRSHRVLRKWVLSSLLT 434
R + V + +
Sbjct: 333 ALLGGRAAEEVVFGDVTS 350
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 33/47 (70%)
Query: 444 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK 490
R +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K
Sbjct: 273 RIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDK 319
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 4/86 (4%)
Query: 4 VDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGG 63
V++LK P + +GA++PKG LL+GPPG GKT LA+AVA EA VPF++ +GS+F+EM G
Sbjct: 56 VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 115
Query: 64 LGAARVRT--EVVFLH--CRVFLHEI 85
+GAARVR E H C VF+ EI
Sbjct: 116 VGAARVRDLFETAKRHAPCIVFIDEI 141
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 4/86 (4%)
Query: 4 VDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGG 63
V++LK P + +GA++PKG LL+GPPG GKT LA+AVA EA VPF++ +GS+F+EM G
Sbjct: 32 VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 91
Query: 64 LGAARVRT--EVVFLH--CRVFLHEI 85
+GAARVR E H C VF+ EI
Sbjct: 92 VGAARVRDLFETAKRHAPCIVFIDEI 117
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
LK PE ++ +G + PKG LL GPPG GKTLLAKAVATE N F+ + GSE ++ G GA
Sbjct: 37 LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96
Query: 67 ARVR 70
+ V+
Sbjct: 97 SLVK 100
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
+KR + ++++G + PKGAL+ GPPG GKTLLA+A A + N FL + + ++M G GA
Sbjct: 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260
Query: 67 ARVR 70
VR
Sbjct: 261 KLVR 264
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 1 MEFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
M + ++ P+ ++ LG P G LL GPPGCGKTLLAKAVA E+ + F+S+ G E + M
Sbjct: 24 MAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83
Query: 61 IGGLGAARVRTEVVFLH------CRVFLHEI 85
G VR VF C +F E+
Sbjct: 84 YVGESERAVRQ--VFQRAKNSAPCVIFFDEV 112
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
L + + Y+ +G P+G LL GPPG GKT+L KAVA F+ +NGSEF+ G G
Sbjct: 192 LVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGP 251
Query: 67 ARVRTEVVFLHCRVFLHEITIFDLETKIIENIFDLET 103
VR VF R I D I FD +T
Sbjct: 252 RMVRD--VFRLARENAPSIIFIDEVDSIATKRFDAQT 286
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 8/85 (9%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
+K PE +++LG PKG +L GPPG GKTLLA+AVA + F+ ++G+E ++ G G+
Sbjct: 168 VKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGS 227
Query: 67 ARVRTEVVFLHCR------VFLHEI 85
VR +F+ R +F+ EI
Sbjct: 228 RMVRE--LFVMAREHAPSIIFMDEI 250
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 2 EFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
E V Y ++ P+ + G KG L GPPGCGKTLLAKA+A E F+S+ G E + M
Sbjct: 29 ELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88
Query: 61 IGGLGAARVRTEVVFLHCRVFLHEITIFD 89
G A VR +F R + FD
Sbjct: 89 WFGESEANVRE--IFDKARQAAPCVLFFD 115
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 2 EFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
E V Y ++ P+ + G KG L GPPGCGKTLLAKA+A E F+S+ G E + M
Sbjct: 491 ELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550
Query: 61 IGGLGAARVRTEVVFLHCRVFLHEITIFD 89
G A VR +F R + FD
Sbjct: 551 WFGESEANVRE--IFDKARQAAPCVLFFD 577
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
L+ P ++ +G K P+G LL GPPG GKTL+A+AVA E F +NG E + + G
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 67 ARVR 70
+ +R
Sbjct: 284 SNLR 287
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 2 EFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
E V Y ++ P+ + G KG L GPPGCGKTLLAKA+A E F+S+ G E + M
Sbjct: 491 ELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550
Query: 61 IGGLGAARVRTEVVFLHCRVFLHEITIFD 89
G A VR +F R + FD
Sbjct: 551 WFGESEANVRE--IFDKARQAAPCVLFFD 577
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
L+ P ++ +G K P+G LL GPPG GKTL+A+AVA E F +NG E + + G
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 67 ARVR 70
+ +R
Sbjct: 284 SNLR 287
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
LK PE +Q +G K PKG LL GPPG GKTLLAKAVA F+ S ++ G A
Sbjct: 201 LKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESA 260
Query: 67 ARVRTEVVFLH----CRVFLHEI 85
+R + C +F+ E+
Sbjct: 261 RIIREMFAYAKEHEPCIIFMDEV 283
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 39/64 (60%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
L PE Y+ +G K PKG +L G PG GKTLLAKAVA + + FL + GSE I+ G G
Sbjct: 202 LTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGP 261
Query: 67 ARVR 70
R
Sbjct: 262 RLCR 265
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 10 PEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARV 69
PE + LG PKG LL GPPG GKTL A+AVA + F+ + GSE ++ G GA V
Sbjct: 232 PERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMV 291
Query: 70 RTEVVFLH----CRVFLHEI 85
R C +F EI
Sbjct: 292 RELFEMARTKKACIIFFDEI 311
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
L+ P ++ +G K P+G LL GPPG GKTL+A+AVA E F +NG E + + G
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 67 ARVR 70
+ +R
Sbjct: 284 SNLR 287
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
L+ P ++ +G K P+G LL GPPG GKTL+A+AVA E F +NG E + + G
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 67 ARVR 70
+ +R
Sbjct: 284 SNLR 287
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
L+ P ++ +G K P+G LL GPPG GKTL+A+AVA E F +NG E + + G
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 67 ARVR 70
+ +R
Sbjct: 284 SNLR 287
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
L+ P ++ +G K P+G LL GPPG GKTL+A+AVA E F +NG E + + G
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 67 ARVR 70
+ +R
Sbjct: 284 SNLR 287
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 9 RPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAAR 68
RPE + L A KG LL GPPG GKTLLA+AVATE + FL+++ + G G
Sbjct: 43 RPELFTGLRAPA-KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKL 101
Query: 69 VRT 71
VR
Sbjct: 102 VRA 104
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 9 RPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAAR 68
RP+ + L PKG LL GPPG GKTL+ K +A+++ F S++ S G G
Sbjct: 106 RPDIFTGLRGP-PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKM 164
Query: 69 VRTEVVFLHCR----VFLHEI 85
VR C+ +F+ EI
Sbjct: 165 VRALFAVARCQQPAVIFIDEI 185
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 9 RPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAAR 68
RPE + L A +G LL GPPG GKT+LAKAVA E+N F +++ + G G
Sbjct: 137 RPELFTGLRAPA-RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKL 195
Query: 69 VRTEVVFLHCRVFLHEITIFD 89
VR +F R I D
Sbjct: 196 VR--ALFAVARELQPSIIFID 214
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 359 QVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEEIFSPI 415
++A HE+GHAL+G + D + K++I+PR +ALG Q P E K +Y+K+++++ I
Sbjct: 18 KIAIHEAGHALMGLVSDDDDKVHKISIIPR-GMALGVTQQLPIEDKHIYDKKDLYNKI 74
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 494 KEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEE 547
KE++A HE+GHAL+G + D + K++I+PR +ALG Q P E K +Y+K++
Sbjct: 16 KEKIAIHEAGHALMGLVSDDDDKVHKISIIPR-GMALGVTQQLPIEDKHIYDKKD 69
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 18/76 (23%)
Query: 445 QVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-------LYNK--- 494
++A HE+GHAL+G + D + K++I+PR +ALG Q P E K LYNK
Sbjct: 18 KIAIHEAGHALMGLVSDDDDKVHKISIIPR-GMALGVTQQLPIEDKHIYDKKDLYNKILV 76
Query: 495 -------EEVAFHESG 503
EEV F + G
Sbjct: 77 LLGGRAAEEVFFGKDG 92
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI 58
G LL GPPG GK+ LAKAVATEAN F S++ S+ +
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI 58
G LL GPPG GK+ LAKAVATEAN F S++ S+ +
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI 58
G LL GPPG GK+ LAKAVATEAN F S++ S+ +
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 97
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI 58
G LL GPPG GK+ LAKAVATEAN F S++ S+ +
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 106
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 17 GAKVP-KGALLLGPPGCGKTLLAKAVATEA-NVPFLSMNGSEFI 58
G + P +G LL GPPG GK+ LAKAVATEA N F S++ S+ +
Sbjct: 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 17 GAKVP-KGALLLGPPGCGKTLLAKAVATEA-NVPFLSMNGSEFI 58
G + P +G LL GPPG GK+ LAKAVATEA N F S++ S+ +
Sbjct: 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLG 65
PK L++GP G GKT +A+ +A AN PF+ + ++F E +G +G
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE-VGYVG 92
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLG 65
PK L++GP G GKT +A+ +A AN PF+ + ++F E +G +G
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE-VGYVG 99
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLG 65
PK L++GP G GKT +A+ +A AN PF+ + ++F E +G +G
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE-VGYVG 93
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
Length = 444
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLG 65
PK L++GP G GKT +A+ +A AN PF+ + ++F E +G +G
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE-VGYVG 93
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
Length = 310
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLG 65
PK L++GP G GKT +A+ +A AN PF+ + ++F E +G +G
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE-VGYVG 93
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLG 65
PK L +GP G GKT +A+ +A AN PF+ + ++F E +G +G
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE-VGYVG 93
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 22 KGALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57
+ LL GPPG GKT LA A+A E + VPF M GSE
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 22 KGALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57
+ LL GPPG GKT LA A+A E + VPF GSE
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEV 115
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 17 GAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSE 56
G+ V + A+L GPPG GKT A VA E L N S+
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIG 62
LL GPP GKT LA +A E+N PF+ + + +MIG
Sbjct: 67 LLEGPPHSGKTALAAKIAEESNFPFIKICSPD--KMIG 102
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIG 62
LL GPP GKT LA +A E+N PF+ + + +MIG
Sbjct: 68 LLEGPPHSGKTALAAKIAEESNFPFIKICSPD--KMIG 103
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
LL+GP G GKTLLA+ +A +VPF + + E
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 89
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
LL+GP G GKTLLA+ +A +VPF + + E
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 89
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMN 53
L G G GKT L KA A + NVPF+ ++
Sbjct: 29 FLTGYMGAGKTTLGKAFARKLNVPFIDLD 57
>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1
Length = 170
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 18 AKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEV--VF 75
+ P G LLGPP + + V E F+E + LG + R E +F
Sbjct: 58 SSCPPGGTLLGPPDSVVDVGSTEVTEEI-----------FLEYLSSLGESLFRGEAYNLF 106
Query: 76 LH-CRVFLHEITIFDLETKIIENIFDLETKIILSSF 110
H C F +E+ F KI I DL ++++ + F
Sbjct: 107 EHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPF 142
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 24/109 (22%)
Query: 17 GAKVPKGALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFIEM-------------- 60
G + L+ G PG GKT +A +A + PF ++ GSE +
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125
Query: 61 -IGGLGAARVRTEVVFLHCRVFLHEITIFDLETKIIENIFDLETKIILS 108
IG VR + +H V LHEI + + T+ +F +T I S
Sbjct: 126 SIG------VRIKAGAVHT-VSLHEIDVINSRTQGFLALFSGDTGEIKS 167
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
LL+GP G GKTL+A+ +A ++P + + E
Sbjct: 76 LLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTE 110
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
LL GPPG GKT LA +A E V +G IE G L A
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA-IEKPGDLAA 82
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
LL GPPG GKT LA +A E V +G IE G L A
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA-IEKPGDLAA 82
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
LL GPPG GKT LA +A E V +G IE G L A
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA-IEKPGDLAA 82
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 18 AKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSE 56
K+P L PG GKT +AKA+ + N + +NGS+
Sbjct: 45 GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 188 ITKLKSELKNRELHIVKMETQLRAYESDKKLARKQLIDS------VNREIAETILLKNFA 241
IT + + + ++ + ++ AYES K++A+ +L + ++ ++A++ + + +
Sbjct: 529 ITLAQGDKASLDMIVAQLNEDTEAYESAKEIAQNKLNTALSSFAVISEKVAQSFIQEALS 588
Query: 242 HQLIVKCP--LMMTYSSEEGRNLNIPASF 268
L + P + +T SSEE N PASF
Sbjct: 589 FDLTLINPRTVKITASSEETSGENAPASF 617
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 25 LLLGPPGCGKTLLAKAVATEANV 47
+L GPPG GKT LA+ +A AN
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANA 76
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 12 YYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLS 51
Y+Q++ +K+ + A++LGPPG GK + + +A + LS
Sbjct: 19 YFQSMASKLLR-AVILGPPGSGKGTVCQRIAQNFGLQHLS 57
>pdb|2RHM|A Chain A, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|B Chain B, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|C Chain C, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|D Chain D, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
Length = 193
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 17 GAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNG 54
G + P ++ G P GKT L++A+AT +P LS +
Sbjct: 1 GXQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDA 38
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 17 GAKVPKGALLLGPPGCGKTLLA--KAVATEANVPFLSMNGSEFIEM 60
G + L+ G PG GKT +A A A + PF ++ GSE +
Sbjct: 81 GKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSL 126
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFL 82
L GPPG GKT LAK++A F+ ++ LG R +E+ H R ++
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRIS----------LGGVRDESEIRG-HRRTYV 158
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 25 LLLGPPGCGKTLLAKAVATE 44
LL GPPG GKT LA +A+E
Sbjct: 55 LLAGPPGLGKTTLAHIIASE 74
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 25 LLLGPPGCGKTLLAKAVATE 44
LL GPPG GKT LA +A+E
Sbjct: 55 LLAGPPGLGKTTLAHIIASE 74
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 25 LLLGPPGCGKTLLAKAVATE 44
LL GPPG GKT LA +A+E
Sbjct: 55 LLAGPPGLGKTTLAHIIASE 74
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 25 LLLGPPGCGKTLLAKAVATE 44
LL GPPG GKT LA +A+E
Sbjct: 55 LLAGPPGLGKTTLAHIIASE 74
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 25 LLLGPPGCGKTLLAKAVATE 44
LL GPPG GKT LA +A+E
Sbjct: 55 LLAGPPGLGKTTLAHIIASE 74
>pdb|2NTS|A Chain A, Crystal Structure Of Sek-Hvb5.1
pdb|2NTT|A Chain A, Crystal Structure Of Sek
pdb|2NTT|B Chain B, Crystal Structure Of Sek
Length = 217
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 208 QLRAYESDKKLARKQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPA- 266
LR + + K + + + IA + N ++ LI + +S+ +G+ L++
Sbjct: 8 NLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGI 67
Query: 267 SFKMMKKQNFLPQTSTASN--VNQSHNIPQEIYDD-----ILNLKLNLEK--------EV 311
S+ ++ TA+N +++S NIP I+ + I K++ K +V
Sbjct: 68 SYNGQSNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDV 127
Query: 312 MLRKKLEEEYSI 323
LRK L+EEY+I
Sbjct: 128 KLRKYLQEEYNI 139
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Adenylate Kinase Complexed With Two Molecules Of Adp
And Mg
Length = 201
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 20 VPKGA----LLLGPPGCGKTLLAKAVATEANVPFLS 51
VP+G+ LLLGPPG GK A +A + +P +S
Sbjct: 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 25 LLLGPPGCGKTLLAKAVATE 44
LL GPPG G+T LA +A+E
Sbjct: 55 LLAGPPGLGRTTLAHIIASE 74
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 12 YYQNLGAKVPKGALLLGPPGCGKTLL 37
+Y L +K +G +L GPPG GKT++
Sbjct: 1041 FYDLLNSK--RGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 12 YYQNLGAKVPKGALLLGPPGCGKTLL 37
+Y L +K +G +L GPPG GKT++
Sbjct: 1260 FYDLLNSK--RGIILCGPPGSGKTMI 1283
>pdb|3EA6|A Chain A, Atomic Resolution Of Crystal Structure Of Sek
Length = 219
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 208 QLRAYESDKKLARKQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPA- 266
LR + + K + + + IA + N ++ LI + +S+ +G+ L++
Sbjct: 8 NLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGI 67
Query: 267 SFKMMKKQNFLPQTSTASN--VNQSHNIPQEIYDD-----ILNLKLNLEK--------EV 311
S+ ++ TA+N +++S NIP I+ + I K++ K +V
Sbjct: 68 SYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDV 127
Query: 312 MLRKKLEEEYSI 323
LRK L+EEY+I
Sbjct: 128 KLRKYLQEEYNI 139
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 21 PKGA--LLLGPPGCGKTLLAKAVATEAN 46
PKG L+ G PG GKT +A+ +A E +
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAELD 35
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 19 KVPKGALL-LGPPGCGKTLLAKAVA 42
K P G+ + LGP G GKT LA+A+A
Sbjct: 518 KRPIGSFIFLGPTGVGKTELARALA 542
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGSE 56
+KR ++Y G+ +P L GPPG GKT A A+A E FL +N S+
Sbjct: 34 VKRLKHYVKTGS-MPH-LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,405,667
Number of Sequences: 62578
Number of extensions: 687272
Number of successful extensions: 2167
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2072
Number of HSP's gapped (non-prelim): 138
length of query: 640
length of database: 14,973,337
effective HSP length: 105
effective length of query: 535
effective length of database: 8,402,647
effective search space: 4495416145
effective search space used: 4495416145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)