Query psy10020
Match_columns 640
No_of_seqs 559 out of 4283
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 15:49:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734|consensus 100.0 4.9E-64 1.1E-68 529.2 19.0 400 2-599 318-736 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 1.3E-57 2.9E-62 501.8 21.9 410 2-601 164-594 (596)
3 KOG0731|consensus 100.0 1.1E-57 2.3E-62 509.7 17.7 413 1-602 324-753 (774)
4 CHL00176 ftsH cell division pr 100.0 1.1E-49 2.3E-54 451.4 19.7 417 2-600 197-628 (638)
5 PRK10733 hflB ATP-dependent me 100.0 1.9E-48 4E-53 445.8 25.1 413 3-600 167-598 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 9.1E-47 2E-51 422.0 20.9 323 3-449 70-403 (495)
7 KOG0734|consensus 100.0 7.1E-45 1.5E-49 384.3 8.8 288 266-584 346-661 (752)
8 KOG0733|consensus 100.0 3.7E-41 8E-46 361.2 18.5 192 2-290 204-405 (802)
9 COG1222 RPT1 ATP-dependent 26S 100.0 5.6E-39 1.2E-43 328.4 13.3 217 5-333 169-399 (406)
10 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.4E-37 3E-42 368.3 15.3 292 10-432 1619-1969(2281)
11 COG0465 HflB ATP-dependent Zn 100.0 5.5E-37 1.2E-41 338.6 8.5 269 279-582 213-507 (596)
12 KOG0733|consensus 100.0 4E-35 8.6E-40 315.0 12.3 225 2-338 526-781 (802)
13 KOG0730|consensus 100.0 1.1E-34 2.3E-39 316.3 12.2 216 3-332 450-680 (693)
14 KOG0738|consensus 100.0 2.9E-32 6.2E-37 280.5 14.3 223 4-332 229-475 (491)
15 KOG0730|consensus 100.0 9.4E-32 2E-36 293.3 16.2 318 7-452 204-657 (693)
16 KOG0731|consensus 100.0 2E-32 4.3E-37 307.0 9.2 283 271-582 358-668 (774)
17 KOG0728|consensus 100.0 2.4E-30 5.2E-35 252.5 12.8 217 6-334 166-396 (404)
18 KOG0652|consensus 100.0 7.8E-30 1.7E-34 250.2 11.2 215 3-325 187-411 (424)
19 KOG0727|consensus 100.0 5.3E-29 1.2E-33 243.4 12.8 214 6-327 174-397 (408)
20 KOG0726|consensus 100.0 2.7E-29 5.8E-34 249.8 6.5 214 5-330 203-430 (440)
21 COG1223 Predicted ATPase (AAA+ 100.0 2.7E-28 5.9E-33 239.6 12.7 209 3-328 136-357 (368)
22 KOG0736|consensus 100.0 1.3E-28 2.8E-33 270.9 11.6 217 5-332 690-938 (953)
23 KOG0729|consensus 100.0 1.2E-28 2.6E-33 242.5 8.0 217 6-334 196-426 (435)
24 KOG0737|consensus 99.9 5.6E-28 1.2E-32 249.2 12.5 193 4-306 109-314 (386)
25 PTZ00454 26S protease regulato 99.9 1.3E-27 2.9E-32 258.6 13.4 217 5-329 163-389 (398)
26 KOG0739|consensus 99.9 1.2E-27 2.7E-32 238.7 11.3 197 3-310 149-357 (439)
27 KOG0735|consensus 99.9 1.1E-26 2.3E-31 253.6 13.2 185 5-290 685-879 (952)
28 PRK03992 proteasome-activating 99.9 1.8E-26 3.9E-31 250.5 13.5 220 6-333 150-379 (389)
29 PTZ00361 26 proteosome regulat 99.9 2.9E-26 6.2E-31 249.8 11.9 216 6-329 202-427 (438)
30 COG0464 SpoVK ATPases of the A 99.9 6E-26 1.3E-30 254.6 13.3 211 7-329 262-486 (494)
31 TIGR01243 CDC48 AAA family ATP 99.9 7.5E-26 1.6E-30 264.6 14.1 219 6-333 472-717 (733)
32 CHL00195 ycf46 Ycf46; Provisio 99.9 1.3E-25 2.8E-30 248.1 13.0 203 13-330 251-467 (489)
33 TIGR01243 CDC48 AAA family ATP 99.9 1E-24 2.2E-29 255.0 17.3 149 6-236 197-355 (733)
34 TIGR01242 26Sp45 26S proteasom 99.9 2.3E-24 5E-29 232.7 12.6 213 6-326 141-363 (364)
35 KOG0651|consensus 99.9 8.4E-25 1.8E-29 220.1 6.2 204 4-317 149-366 (388)
36 KOG0741|consensus 99.9 1.7E-24 3.7E-29 230.0 7.5 225 9-338 244-502 (744)
37 PRK10733 hflB ATP-dependent me 99.9 2E-24 4.4E-29 247.9 8.7 274 280-583 216-511 (644)
38 CHL00176 ftsH cell division pr 99.9 6.6E-24 1.4E-28 241.4 8.4 273 279-582 246-540 (638)
39 KOG0740|consensus 99.9 5.3E-23 1.2E-27 219.6 10.8 187 5-290 171-365 (428)
40 TIGR03689 pup_AAA proteasome A 99.9 8E-22 1.7E-26 217.9 11.4 180 6-290 201-404 (512)
41 PLN00020 ribulose bisphosphate 99.9 1.9E-21 4.1E-26 203.1 12.3 146 13-236 140-307 (413)
42 KOG0732|consensus 99.8 8.8E-21 1.9E-25 218.6 9.2 198 6-311 284-497 (1080)
43 KOG0736|consensus 99.8 4E-19 8.7E-24 196.6 18.9 342 19-462 429-910 (953)
44 PF01434 Peptidase_M41: Peptid 99.8 5.4E-21 1.2E-25 191.0 1.9 119 313-449 1-122 (213)
45 TIGR01241 FtsH_fam ATP-depende 99.8 4.1E-19 8.9E-24 199.2 9.4 275 279-583 118-412 (495)
46 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.4E-18 3E-23 208.2 8.8 257 288-582 1712-1982(2281)
47 KOG0735|consensus 99.7 1.9E-17 4E-22 181.9 15.7 312 22-452 432-890 (952)
48 KOG0743|consensus 99.7 5.6E-17 1.2E-21 172.4 7.8 159 2-242 216-384 (457)
49 KOG0744|consensus 99.6 1E-15 2.2E-20 155.5 10.0 186 21-290 177-390 (423)
50 KOG0742|consensus 99.6 1.1E-15 2.3E-20 159.1 9.3 195 19-297 382-593 (630)
51 COG0464 SpoVK ATPases of the A 99.6 5.3E-14 1.2E-18 158.2 17.5 338 7-450 4-462 (494)
52 PF00004 AAA: ATPase family as 99.6 9.9E-15 2.1E-19 133.4 8.7 115 24-219 1-120 (132)
53 COG1222 RPT1 ATP-dependent 26S 99.5 3.9E-15 8.5E-20 153.7 3.7 178 271-469 203-392 (406)
54 PF01434 Peptidase_M41: Peptid 99.3 3.5E-13 7.7E-18 134.7 1.9 108 466-583 9-131 (213)
55 CHL00181 cbbX CbbX; Provisiona 99.3 2.3E-11 5.1E-16 127.0 11.8 81 11-91 46-137 (287)
56 TIGR02880 cbbX_cfxQ probable R 99.2 5.7E-11 1.2E-15 124.1 8.0 84 8-91 42-136 (284)
57 TIGR02881 spore_V_K stage V sp 99.1 2E-10 4.3E-15 118.6 8.8 74 16-89 34-118 (261)
58 TIGR00763 lon ATP-dependent pr 99.0 7.7E-10 1.7E-14 130.7 11.8 69 23-91 349-429 (775)
59 TIGR02639 ClpA ATP-dependent C 99.0 6.1E-10 1.3E-14 130.8 9.9 74 19-92 201-290 (731)
60 PRK00080 ruvB Holliday junctio 99.0 9.2E-09 2E-13 109.8 14.8 63 21-89 51-115 (328)
61 TIGR00635 ruvB Holliday juncti 98.9 9.9E-09 2.1E-13 108.2 13.4 66 21-90 30-95 (305)
62 KOG0727|consensus 98.9 7.7E-10 1.7E-14 109.5 2.9 180 271-471 207-397 (408)
63 PRK11034 clpA ATP-dependent Cl 98.9 5.4E-09 1.2E-13 122.0 10.0 74 20-93 206-295 (758)
64 KOG0726|consensus 98.9 7.2E-10 1.6E-14 111.8 1.8 176 271-469 237-425 (440)
65 KOG0728|consensus 98.9 6.9E-10 1.5E-14 109.7 1.5 176 272-469 200-388 (404)
66 PRK00149 dnaA chromosomal repl 98.8 1.4E-08 3E-13 113.1 10.9 68 22-90 149-225 (450)
67 TIGR03345 VI_ClpV1 type VI sec 98.8 8E-09 1.7E-13 122.6 9.5 73 21-93 208-297 (852)
68 COG2256 MGS1 ATPase related to 98.8 2.3E-08 5.1E-13 105.6 10.7 60 23-89 50-117 (436)
69 PRK10865 protein disaggregatio 98.8 1.6E-08 3.5E-13 120.3 10.0 73 21-93 199-288 (857)
70 COG0466 Lon ATP-dependent Lon 98.8 1.2E-08 2.5E-13 114.4 8.0 70 24-93 353-434 (782)
71 TIGR00362 DnaA chromosomal rep 98.8 3.2E-08 6.9E-13 108.7 10.8 68 22-90 137-213 (405)
72 PF05496 RuvB_N: Holliday junc 98.8 2.3E-08 5.1E-13 99.2 8.4 64 23-90 52-115 (233)
73 PRK04195 replication factor C 98.7 4E-08 8.7E-13 110.3 11.1 70 21-90 39-112 (482)
74 KOG2004|consensus 98.7 2.3E-08 5.1E-13 111.4 8.8 66 24-89 441-518 (906)
75 CHL00095 clpC Clp protease ATP 98.7 1.9E-08 4.2E-13 119.6 8.2 78 16-93 195-288 (821)
76 TIGR03346 chaperone_ClpB ATP-d 98.7 3.4E-08 7.5E-13 117.8 10.3 72 21-92 194-282 (852)
77 TIGR02640 gas_vesic_GvpN gas v 98.7 3.5E-08 7.5E-13 102.0 8.8 35 21-55 21-55 (262)
78 PRK10787 DNA-binding ATP-depen 98.7 5.2E-08 1.1E-12 114.6 10.9 68 24-91 352-431 (784)
79 PRK14962 DNA polymerase III su 98.7 9.1E-08 2E-12 106.5 12.2 37 199-236 146-185 (472)
80 PRK00411 cdc6 cell division co 98.7 1.2E-07 2.6E-12 103.5 12.2 35 21-55 55-94 (394)
81 PRK14088 dnaA chromosomal repl 98.7 1E-07 2.2E-12 105.6 11.0 68 22-89 131-207 (440)
82 PRK07940 DNA polymerase III su 98.7 1.3E-07 2.7E-12 103.0 11.3 78 183-290 136-216 (394)
83 KOG0729|consensus 98.6 4.4E-09 9.5E-14 104.9 -0.2 175 269-469 227-418 (435)
84 PRK14956 DNA polymerase III su 98.6 1.6E-07 3.5E-12 103.5 11.0 72 183-279 140-214 (484)
85 TIGR02902 spore_lonB ATP-depen 98.6 2.5E-07 5.5E-12 104.8 11.7 93 201-324 235-330 (531)
86 PRK06893 DNA replication initi 98.5 3.1E-07 6.6E-12 93.1 9.8 60 24-89 42-104 (229)
87 PRK12323 DNA polymerase III su 98.5 3.8E-07 8.3E-12 103.1 10.9 47 183-236 143-192 (700)
88 COG1126 GlnQ ABC-type polar am 98.5 9.3E-08 2E-12 93.7 5.0 57 2-58 7-67 (240)
89 KOG0652|consensus 98.5 3.3E-08 7.3E-13 98.5 1.9 132 280-430 236-367 (424)
90 KOG2028|consensus 98.5 6.9E-07 1.5E-11 93.1 11.3 60 23-89 164-235 (554)
91 PRK06645 DNA polymerase III su 98.5 7.1E-07 1.5E-11 100.0 12.1 73 198-290 156-231 (507)
92 PRK07003 DNA polymerase III su 98.5 6.3E-07 1.4E-11 102.7 10.7 47 183-236 138-187 (830)
93 PRK13342 recombination factor 98.5 5.8E-07 1.3E-11 99.0 10.2 65 22-89 37-105 (413)
94 PRK14086 dnaA chromosomal repl 98.5 5.2E-07 1.1E-11 102.1 9.9 68 23-90 316-391 (617)
95 PF07728 AAA_5: AAA domain (dy 98.5 2.1E-07 4.5E-12 86.4 5.5 67 23-89 1-78 (139)
96 TIGR02928 orc1/cdc6 family rep 98.5 7.3E-07 1.6E-11 96.3 10.5 36 21-56 40-84 (365)
97 PRK08903 DnaA regulatory inact 98.4 1.5E-06 3.2E-11 87.7 11.8 59 21-89 42-103 (227)
98 PRK14961 DNA polymerase III su 98.4 9.3E-07 2E-11 95.7 10.9 36 200-236 149-187 (363)
99 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.5E-06 3.3E-11 87.2 11.1 63 21-89 38-103 (226)
100 PRK14960 DNA polymerase III su 98.4 1.2E-06 2.6E-11 99.4 11.1 28 20-47 36-63 (702)
101 PLN03025 replication factor C 98.4 1.1E-06 2.5E-11 93.4 10.5 65 23-89 36-112 (319)
102 cd00009 AAA The AAA+ (ATPases 98.4 8.3E-07 1.8E-11 81.2 7.9 68 21-88 19-96 (151)
103 TIGR01650 PD_CobS cobaltochela 98.4 5.5E-07 1.2E-11 94.8 7.4 72 18-89 61-147 (327)
104 PHA02544 44 clamp loader, smal 98.4 8.8E-07 1.9E-11 93.9 8.9 65 21-88 43-112 (316)
105 PRK05342 clpX ATP-dependent pr 98.4 4.9E-07 1.1E-11 99.0 6.9 71 22-92 109-189 (412)
106 PRK12402 replication factor C 98.4 2.2E-06 4.7E-11 91.5 11.5 35 23-57 38-77 (337)
107 TIGR00382 clpX endopeptidase C 98.4 6E-07 1.3E-11 97.9 7.2 70 23-92 118-197 (413)
108 PRK06620 hypothetical protein; 98.4 1.4E-06 3.1E-11 87.2 9.4 26 22-47 45-70 (214)
109 PRK07994 DNA polymerase III su 98.4 1.8E-06 3.8E-11 99.0 10.7 47 183-236 138-187 (647)
110 COG1120 FepC ABC-type cobalami 98.3 3.3E-07 7.2E-12 93.4 4.3 83 7-89 12-100 (258)
111 PRK14964 DNA polymerase III su 98.3 3.3E-06 7.1E-11 94.1 12.1 82 183-290 135-219 (491)
112 PF07724 AAA_2: AAA domain (Cd 98.3 6.1E-07 1.3E-11 86.7 5.3 66 24-91 6-83 (171)
113 PRK12422 chromosomal replicati 98.3 2.9E-06 6.2E-11 94.1 11.2 67 22-89 142-215 (445)
114 PRK14958 DNA polymerase III su 98.3 3.1E-06 6.8E-11 95.2 11.4 28 20-47 37-64 (509)
115 PRK05896 DNA polymerase III su 98.3 6.6E-06 1.4E-10 93.2 13.8 47 183-236 138-187 (605)
116 PRK08084 DNA replication initi 98.3 3.1E-06 6.8E-11 86.1 10.2 62 22-89 46-110 (235)
117 PRK08691 DNA polymerase III su 98.3 3.7E-06 8E-11 96.2 11.4 29 19-47 36-64 (709)
118 PRK08727 hypothetical protein; 98.3 5.6E-06 1.2E-10 84.1 11.7 59 23-89 43-106 (233)
119 PRK07764 DNA polymerase III su 98.3 2.3E-06 4.9E-11 101.0 10.0 47 183-236 139-188 (824)
120 KOG0989|consensus 98.3 3.5E-06 7.5E-11 86.5 10.0 25 23-47 59-83 (346)
121 PRK14949 DNA polymerase III su 98.3 3.7E-06 8E-11 98.2 11.5 47 183-236 138-187 (944)
122 PTZ00112 origin recognition co 98.3 6.1E-06 1.3E-10 95.3 12.2 38 198-236 900-945 (1164)
123 PRK14963 DNA polymerase III su 98.3 3.5E-06 7.5E-11 94.7 10.2 37 199-236 145-184 (504)
124 TIGR00678 holB DNA polymerase 98.3 3.4E-06 7.4E-11 82.6 9.0 47 183-236 115-164 (188)
125 PHA02244 ATPase-like protein 98.2 2.5E-06 5.4E-11 91.0 8.0 69 21-89 119-193 (383)
126 PRK14969 DNA polymerase III su 98.2 6.7E-06 1.5E-10 93.1 11.9 47 183-236 138-187 (527)
127 PRK13341 recombination factor 98.2 3.5E-06 7.7E-11 98.2 9.9 67 23-89 54-122 (725)
128 COG3842 PotA ABC-type spermidi 98.2 8.8E-07 1.9E-11 94.2 4.4 68 5-74 13-84 (352)
129 PF00308 Bac_DnaA: Bacterial d 98.2 3.5E-06 7.6E-11 84.8 8.3 65 24-89 37-110 (219)
130 PRK05642 DNA replication initi 98.2 6.7E-06 1.5E-10 83.6 10.4 62 22-89 46-110 (234)
131 PRK14957 DNA polymerase III su 98.2 5.5E-06 1.2E-10 93.5 10.5 47 183-236 138-187 (546)
132 COG0714 MoxR-like ATPases [Gen 98.2 3.9E-06 8.5E-11 89.7 8.9 37 21-57 43-79 (329)
133 COG1117 PstB ABC-type phosphat 98.2 1.2E-06 2.7E-11 85.6 4.4 72 3-74 13-95 (253)
134 COG1116 TauB ABC-type nitrate/ 98.2 8E-07 1.7E-11 89.3 3.2 51 7-57 13-67 (248)
135 COG2255 RuvB Holliday junction 98.2 4.7E-06 1E-10 84.7 8.6 63 24-92 55-119 (332)
136 PRK14087 dnaA chromosomal repl 98.2 7.2E-06 1.5E-10 91.2 10.9 68 22-89 142-219 (450)
137 COG3839 MalK ABC-type sugar tr 98.2 9.7E-07 2.1E-11 93.4 3.7 48 12-59 18-69 (338)
138 PRK14959 DNA polymerase III su 98.2 8.4E-06 1.8E-10 92.8 11.3 47 183-236 138-187 (624)
139 PRK14965 DNA polymerase III su 98.2 9.5E-06 2.1E-10 92.9 11.4 47 183-236 138-187 (576)
140 PRK14951 DNA polymerase III su 98.2 9.5E-06 2.1E-10 92.8 11.3 28 20-47 37-64 (618)
141 PRK05563 DNA polymerase III su 98.2 1.8E-05 3.9E-10 90.3 13.4 47 183-236 138-187 (559)
142 TIGR02397 dnaX_nterm DNA polym 98.2 1.6E-05 3.5E-10 85.5 12.4 37 199-236 146-185 (355)
143 COG4619 ABC-type uncharacteriz 98.1 2.7E-06 5.8E-11 80.2 4.9 76 8-85 14-93 (223)
144 COG1219 ClpX ATP-dependent pro 98.1 2.8E-06 6E-11 87.5 5.0 75 18-92 93-178 (408)
145 PRK14953 DNA polymerase III su 98.1 2.5E-05 5.4E-10 87.5 12.9 27 20-46 37-63 (486)
146 PRK11034 clpA ATP-dependent Cl 98.1 1.1E-05 2.3E-10 94.7 10.1 69 21-89 487-570 (758)
147 PRK14952 DNA polymerase III su 98.1 2.8E-05 6E-10 88.7 13.1 47 183-236 137-186 (584)
148 COG1125 OpuBA ABC-type proline 98.1 2.9E-06 6.2E-11 85.1 4.5 57 3-59 7-67 (309)
149 PRK14948 DNA polymerase III su 98.1 1.7E-05 3.6E-10 91.4 11.2 28 20-47 37-64 (620)
150 TIGR02903 spore_lon_C ATP-depe 98.1 4.3E-05 9.4E-10 88.2 14.6 37 21-57 175-221 (615)
151 PRK09087 hypothetical protein; 98.1 8.4E-06 1.8E-10 82.4 7.7 23 24-46 47-69 (226)
152 PRK14970 DNA polymerase III su 98.1 1.9E-05 4.1E-10 85.7 10.4 28 19-46 37-64 (367)
153 COG1124 DppF ABC-type dipeptid 98.0 4.4E-06 9.5E-11 83.5 4.8 78 11-95 21-102 (252)
154 KOG0745|consensus 98.0 5E-06 1.1E-10 88.6 5.2 76 17-92 221-307 (564)
155 PRK07133 DNA polymerase III su 98.0 2.8E-05 6E-10 89.9 11.6 47 183-236 137-186 (725)
156 PRK14955 DNA polymerase III su 98.0 2.9E-05 6.3E-10 85.2 10.9 29 19-47 36-64 (397)
157 TIGR03015 pepcterm_ATPase puta 98.0 2.5E-05 5.3E-10 80.6 9.9 47 267-324 218-264 (269)
158 COG2884 FtsE Predicted ATPase 98.0 5.9E-06 1.3E-10 79.5 4.4 56 5-60 10-69 (223)
159 TIGR02639 ClpA ATP-dependent C 98.0 4.3E-05 9.3E-10 90.2 12.6 69 21-89 483-566 (731)
160 PRK06305 DNA polymerase III su 98.0 3.1E-05 6.8E-10 86.1 10.6 47 183-236 140-189 (451)
161 smart00382 AAA ATPases associa 98.0 8.2E-06 1.8E-10 73.7 5.0 71 23-93 4-95 (148)
162 cd03216 ABC_Carb_Monos_I This 98.0 7E-06 1.5E-10 78.6 4.7 80 8-87 11-111 (163)
163 COG1136 SalX ABC-type antimicr 98.0 7.2E-06 1.6E-10 82.1 4.8 50 10-59 18-71 (226)
164 PRK06647 DNA polymerase III su 98.0 3.3E-05 7.2E-10 88.0 10.7 47 183-236 138-187 (563)
165 COG1127 Ttg2A ABC-type transpo 98.0 7.5E-06 1.6E-10 81.6 4.6 55 5-59 16-74 (263)
166 PRK11331 5-methylcytosine-spec 97.9 3.3E-05 7.2E-10 84.6 9.5 26 21-46 194-219 (459)
167 PRK05707 DNA polymerase III su 97.9 4.9E-05 1.1E-09 81.1 10.5 47 183-236 125-174 (328)
168 COG4604 CeuD ABC-type enteroch 97.9 2.1E-05 4.6E-10 76.2 6.9 86 4-89 8-99 (252)
169 COG0396 sufC Cysteine desulfur 97.9 7.4E-06 1.6E-10 81.2 3.7 59 7-65 13-78 (251)
170 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 8.5E-06 1.8E-10 76.5 3.9 78 9-87 12-99 (144)
171 PRK14954 DNA polymerase III su 97.9 5E-05 1.1E-09 87.2 10.9 29 19-47 36-64 (620)
172 PRK00440 rfc replication facto 97.9 5.2E-05 1.1E-09 80.1 10.3 23 23-45 40-62 (319)
173 KOG0058|consensus 97.9 2.6E-05 5.7E-10 88.4 8.2 48 11-58 482-533 (716)
174 COG3638 ABC-type phosphate/pho 97.9 1.4E-05 3E-10 79.5 5.0 55 6-60 13-71 (258)
175 COG1118 CysA ABC-type sulfate/ 97.9 9.8E-06 2.1E-10 83.4 3.9 52 7-58 12-67 (345)
176 PRK14950 DNA polymerase III su 97.8 7E-05 1.5E-09 86.2 10.7 26 21-46 38-63 (585)
177 cd03222 ABC_RNaseL_inhibitor T 97.8 1.9E-05 4E-10 76.8 5.1 80 7-87 10-100 (177)
178 TIGR01166 cbiO cobalt transpor 97.8 1.4E-05 3.1E-10 78.3 4.3 50 8-57 3-56 (190)
179 cd00267 ABC_ATPase ABC (ATP-bi 97.8 1.8E-05 3.8E-10 75.1 4.7 78 10-88 12-110 (157)
180 KOG1969|consensus 97.8 7.8E-05 1.7E-09 84.3 10.2 64 24-89 329-400 (877)
181 COG4525 TauB ABC-type taurine 97.8 1.2E-05 2.6E-10 77.8 3.1 48 11-58 19-70 (259)
182 PRK08451 DNA polymerase III su 97.8 0.0001 2.2E-09 83.1 11.0 82 183-290 136-220 (535)
183 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 1.6E-05 3.6E-10 79.5 4.2 49 10-58 17-69 (218)
184 COG0410 LivF ABC-type branched 97.8 1.7E-05 3.6E-10 78.8 4.0 58 3-60 9-70 (237)
185 PRK09111 DNA polymerase III su 97.8 7.6E-05 1.6E-09 85.5 10.0 29 19-47 44-72 (598)
186 cd03214 ABC_Iron-Siderophores_ 97.8 2E-05 4.4E-10 76.6 4.5 50 8-57 10-63 (180)
187 cd03235 ABC_Metallic_Cations A 97.8 2.3E-05 5.1E-10 78.2 4.8 50 8-57 10-63 (213)
188 cd03226 ABC_cobalt_CbiO_domain 97.8 2.2E-05 4.8E-10 77.9 4.5 48 10-57 13-64 (205)
189 TIGR02315 ABC_phnC phosphonate 97.8 2.3E-05 5E-10 79.8 4.6 50 9-58 14-67 (243)
190 COG1122 CbiO ABC-type cobalt t 97.8 1.6E-05 3.5E-10 80.6 3.4 74 10-83 17-95 (235)
191 cd03261 ABC_Org_Solvent_Resist 97.8 2.1E-05 4.5E-10 79.8 4.1 50 8-57 11-64 (235)
192 cd03269 ABC_putative_ATPase Th 97.8 2.2E-05 4.8E-10 78.1 4.2 50 8-57 11-64 (210)
193 cd03301 ABC_MalK_N The N-termi 97.7 2.2E-05 4.9E-10 78.2 4.0 50 8-57 11-64 (213)
194 cd03259 ABC_Carb_Solutes_like 97.7 2.4E-05 5.3E-10 78.0 4.3 50 8-57 11-64 (213)
195 PRK10247 putative ABC transpor 97.7 1.8E-05 3.9E-10 79.9 3.3 50 8-57 18-71 (225)
196 cd03262 ABC_HisP_GlnQ_permease 97.7 2.7E-05 5.9E-10 77.6 4.4 50 8-57 11-64 (213)
197 COG1121 ZnuC ABC-type Mn/Zn tr 97.7 2.8E-05 6E-10 79.1 4.3 51 7-57 14-68 (254)
198 TIGR03608 L_ocin_972_ABC putat 97.7 2.9E-05 6.2E-10 77.0 4.3 50 8-57 9-62 (206)
199 cd03256 ABC_PhnC_transporter A 97.7 2.8E-05 6.1E-10 79.0 4.3 49 10-58 14-66 (241)
200 cd03225 ABC_cobalt_CbiO_domain 97.7 2.9E-05 6.3E-10 77.3 4.3 48 10-57 14-65 (211)
201 cd03224 ABC_TM1139_LivF_branch 97.7 2.9E-05 6.2E-10 77.9 4.2 50 8-57 11-64 (222)
202 TIGR01978 sufC FeS assembly AT 97.7 3E-05 6.6E-10 78.9 4.4 50 8-57 11-66 (243)
203 cd03219 ABC_Mj1267_LivG_branch 97.7 2.9E-05 6.3E-10 78.7 4.2 50 8-57 11-64 (236)
204 cd03263 ABC_subfamily_A The AB 97.7 3.1E-05 6.7E-10 77.6 4.4 48 10-57 15-66 (220)
205 cd03293 ABC_NrtD_SsuB_transpor 97.7 2.8E-05 6E-10 78.1 4.0 48 10-57 17-68 (220)
206 TIGR02673 FtsE cell division A 97.7 3.2E-05 6.9E-10 77.2 4.4 50 9-58 14-67 (214)
207 cd03258 ABC_MetN_methionine_tr 97.7 3.2E-05 6.9E-10 78.3 4.4 48 11-58 19-70 (233)
208 cd03296 ABC_CysA_sulfate_impor 97.7 3E-05 6.5E-10 78.9 4.2 50 8-57 13-66 (239)
209 cd03218 ABC_YhbG The ABC trans 97.7 3.2E-05 7E-10 78.2 4.4 50 8-57 11-64 (232)
210 cd03265 ABC_DrrA DrrA is the A 97.7 3.2E-05 7E-10 77.6 4.3 50 8-57 11-64 (220)
211 PRK11248 tauB taurine transpor 97.7 3.2E-05 6.9E-10 79.7 4.3 50 8-57 12-65 (255)
212 cd03229 ABC_Class3 This class 97.7 3.3E-05 7.1E-10 75.0 4.2 50 8-57 11-64 (178)
213 PRK13540 cytochrome c biogenes 97.7 3.6E-05 7.7E-10 76.2 4.4 50 8-57 12-65 (200)
214 COG4559 ABC-type hemin transpo 97.7 4.2E-05 9.1E-10 75.0 4.7 56 7-62 11-70 (259)
215 cd03264 ABC_drug_resistance_li 97.7 3.5E-05 7.5E-10 76.8 4.3 50 8-57 11-63 (211)
216 TIGR03410 urea_trans_UrtE urea 97.7 3.5E-05 7.6E-10 77.8 4.4 50 8-57 11-64 (230)
217 cd03292 ABC_FtsE_transporter F 97.7 3.4E-05 7.4E-10 76.9 4.1 48 10-57 14-65 (214)
218 COG4133 CcmA ABC-type transpor 97.7 4.2E-05 9E-10 73.7 4.4 50 8-57 13-66 (209)
219 cd03257 ABC_NikE_OppD_transpor 97.7 4.1E-05 9E-10 77.0 4.5 47 11-57 19-69 (228)
220 cd03254 ABCC_Glucan_exporter_l 97.7 3.2E-05 6.9E-10 78.0 3.7 49 10-58 16-68 (229)
221 TIGR03864 PQQ_ABC_ATP ABC tran 97.7 3.6E-05 7.8E-10 78.2 4.1 50 8-57 12-65 (236)
222 PF05673 DUF815: Protein of un 97.7 0.00022 4.8E-09 72.0 9.6 61 21-86 52-116 (249)
223 PRK14250 phosphate ABC transpo 97.7 3.9E-05 8.4E-10 78.2 4.3 51 8-58 14-68 (241)
224 PRK14267 phosphate ABC transpo 97.7 3.7E-05 8E-10 78.9 4.1 50 8-57 15-73 (253)
225 TIGR01186 proV glycine betaine 97.7 2.1E-05 4.6E-10 85.0 2.4 52 7-58 3-58 (363)
226 PRK11124 artP arginine transpo 97.7 3.9E-05 8.4E-10 78.2 4.1 50 8-57 13-66 (242)
227 cd03268 ABC_BcrA_bacitracin_re 97.6 4.2E-05 9.2E-10 76.0 4.3 50 8-57 11-64 (208)
228 COG0470 HolB ATPase involved i 97.6 0.00013 2.8E-09 77.2 8.3 27 20-46 23-49 (325)
229 PF00005 ABC_tran: ABC transpo 97.6 2.2E-05 4.9E-10 72.3 2.2 46 13-58 1-50 (137)
230 cd03294 ABC_Pro_Gly_Bertaine T 97.6 3.7E-05 8.1E-10 79.8 4.0 50 8-57 35-88 (269)
231 TIGR00960 3a0501s02 Type II (G 97.6 3.9E-05 8.5E-10 76.7 4.1 49 10-58 16-68 (216)
232 cd03230 ABC_DR_subfamily_A Thi 97.6 4.3E-05 9.2E-10 73.9 4.1 49 9-57 12-64 (173)
233 cd03266 ABC_NatA_sodium_export 97.6 4.3E-05 9.4E-10 76.5 4.3 47 11-57 19-69 (218)
234 PRK13531 regulatory ATPase Rav 97.6 7E-05 1.5E-09 82.7 6.2 23 24-46 42-64 (498)
235 PRK13538 cytochrome c biogenes 97.6 4.6E-05 1E-09 75.6 4.4 50 8-57 12-65 (204)
236 PRK09493 glnQ glutamine ABC tr 97.6 3.9E-05 8.5E-10 78.0 4.0 51 8-58 12-66 (240)
237 PRK14247 phosphate ABC transpo 97.6 4.3E-05 9.3E-10 78.2 4.3 50 8-57 14-72 (250)
238 PRK11264 putative amino-acid A 97.6 4.5E-05 9.7E-10 78.1 4.4 50 8-57 14-67 (250)
239 cd03260 ABC_PstB_phosphate_tra 97.6 4.2E-05 9.1E-10 77.1 4.1 51 8-58 11-70 (227)
240 PRK10895 lipopolysaccharide AB 97.6 4.6E-05 1E-09 77.6 4.4 50 8-57 14-67 (241)
241 COG1101 PhnK ABC-type uncharac 97.6 4.7E-05 1E-09 74.8 4.2 84 10-93 19-110 (263)
242 TIGR02211 LolD_lipo_ex lipopro 97.6 4.7E-05 1E-09 76.4 4.3 49 10-58 18-70 (221)
243 PRK14273 phosphate ABC transpo 97.6 4.5E-05 9.8E-10 78.3 4.3 50 8-57 18-76 (254)
244 cd03228 ABCC_MRP_Like The MRP 97.6 3.9E-05 8.4E-10 74.0 3.5 47 11-57 16-66 (171)
245 PRK13539 cytochrome c biogenes 97.6 4.8E-05 1E-09 75.7 4.3 50 8-57 13-66 (207)
246 PRK10253 iron-enterobactin tra 97.6 3.7E-05 8.1E-10 79.5 3.6 50 8-57 18-71 (265)
247 COG0411 LivG ABC-type branched 97.6 1.2E-05 2.6E-10 80.5 -0.2 59 3-61 10-72 (250)
248 PRK13638 cbiO cobalt transport 97.6 4.6E-05 9.9E-10 79.2 4.2 50 8-57 12-65 (271)
249 cd03246 ABCC_Protease_Secretio 97.6 3.8E-05 8.2E-10 74.2 3.3 49 10-58 15-67 (173)
250 PRK13543 cytochrome c biogenes 97.6 5.1E-05 1.1E-09 75.9 4.3 50 8-57 22-75 (214)
251 TIGR01189 ccmA heme ABC export 97.6 4.9E-05 1.1E-09 75.0 4.2 50 8-57 11-64 (198)
252 PRK11432 fbpC ferric transport 97.6 4.5E-05 9.7E-10 82.2 4.1 51 8-58 17-71 (351)
253 PRK13548 hmuV hemin importer A 97.6 4.9E-05 1.1E-09 78.4 4.3 50 8-57 13-66 (258)
254 PRK13547 hmuV hemin importer A 97.6 3.7E-05 8E-10 80.0 3.4 51 7-57 11-73 (272)
255 PRK11831 putative ABC transpor 97.6 4.6E-05 1E-09 79.1 4.1 50 8-57 18-71 (269)
256 PRK09183 transposase/IS protei 97.6 9.8E-05 2.1E-09 76.3 6.4 67 23-89 104-177 (259)
257 TIGR03005 ectoine_ehuA ectoine 97.6 4.9E-05 1.1E-09 77.9 4.2 50 8-57 11-64 (252)
258 COG1474 CDC6 Cdc6-related prot 97.6 0.00026 5.6E-09 76.6 9.9 38 20-57 41-83 (366)
259 TIGR03411 urea_trans_UrtD urea 97.6 5.2E-05 1.1E-09 77.2 4.3 50 8-57 13-66 (242)
260 PF07726 AAA_3: ATPase family 97.6 8.8E-05 1.9E-09 67.6 5.2 68 24-91 2-77 (131)
261 cd03247 ABCC_cytochrome_bd The 97.6 5.5E-05 1.2E-09 73.4 4.2 48 11-58 16-67 (178)
262 PRK10908 cell division protein 97.6 5E-05 1.1E-09 76.3 4.1 49 9-57 14-66 (222)
263 PRK14242 phosphate transporter 97.6 4.8E-05 1.1E-09 78.0 4.1 50 8-57 17-75 (253)
264 PRK11650 ugpC glycerol-3-phosp 97.6 4.7E-05 1E-09 82.2 4.1 51 8-58 15-69 (356)
265 PRK14262 phosphate ABC transpo 97.6 4.6E-05 1E-09 78.0 3.9 50 8-57 14-72 (250)
266 PRK04132 replication factor C 97.6 0.0002 4.2E-09 84.5 9.5 63 25-89 568-643 (846)
267 TIGR01288 nodI ATP-binding ABC 97.6 5E-05 1.1E-09 80.2 4.2 50 8-57 15-68 (303)
268 cd03290 ABCC_SUR1_N The SUR do 97.6 6.1E-05 1.3E-09 75.5 4.6 49 9-57 13-65 (218)
269 TIGR00390 hslU ATP-dependent p 97.6 5.5E-05 1.2E-09 82.0 4.5 71 20-93 46-118 (441)
270 PRK14274 phosphate ABC transpo 97.6 4.9E-05 1.1E-09 78.3 3.9 50 8-57 23-81 (259)
271 TIGR03265 PhnT2 putative 2-ami 97.6 4.8E-05 1E-09 82.1 4.0 51 8-58 15-69 (353)
272 PRK11247 ssuB aliphatic sulfon 97.6 5.4E-05 1.2E-09 78.1 4.2 49 8-56 23-75 (257)
273 PRK10575 iron-hydroxamate tran 97.6 5.6E-05 1.2E-09 78.2 4.4 51 8-58 22-76 (265)
274 PRK11629 lolD lipoprotein tran 97.6 5E-05 1.1E-09 76.9 3.9 49 10-58 22-74 (233)
275 cd03295 ABC_OpuCA_Osmoprotecti 97.6 5.8E-05 1.2E-09 77.0 4.3 48 10-57 14-65 (242)
276 PRK14244 phosphate ABC transpo 97.6 6.1E-05 1.3E-09 77.2 4.4 51 8-58 16-75 (251)
277 TIGR01188 drrA daunorubicin re 97.6 5.7E-05 1.2E-09 79.8 4.3 50 8-57 4-57 (302)
278 cd03217 ABC_FeS_Assembly ABC-t 97.6 6.6E-05 1.4E-09 74.3 4.5 51 8-58 11-67 (200)
279 PRK10584 putative ABC transpor 97.6 5.6E-05 1.2E-09 76.3 4.0 47 11-57 24-74 (228)
280 PRK11300 livG leucine/isoleuci 97.6 5.8E-05 1.3E-09 77.5 4.2 50 8-57 16-69 (255)
281 PRK14256 phosphate ABC transpo 97.6 5.6E-05 1.2E-09 77.5 4.1 50 8-57 15-73 (252)
282 COG4608 AppF ABC-type oligopep 97.6 8.5E-05 1.8E-09 75.8 5.2 48 11-58 27-78 (268)
283 PRK14241 phosphate transporter 97.6 5.6E-05 1.2E-09 77.9 4.0 50 8-57 15-73 (258)
284 PRK14238 phosphate transporter 97.6 5.5E-05 1.2E-09 78.6 4.0 50 8-57 35-93 (271)
285 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 5E-05 1.1E-09 77.2 3.5 48 11-58 17-68 (238)
286 PRK10744 pstB phosphate transp 97.6 6E-05 1.3E-09 77.7 4.2 50 8-57 24-82 (260)
287 PRK14235 phosphate transporter 97.6 5.8E-05 1.3E-09 78.2 4.1 50 8-57 30-88 (267)
288 TIGR02323 CP_lyasePhnK phospho 97.6 6.5E-05 1.4E-09 77.1 4.4 49 8-56 14-66 (253)
289 PRK14261 phosphate ABC transpo 97.6 6E-05 1.3E-09 77.4 4.1 51 8-58 17-76 (253)
290 PRK13407 bchI magnesium chelat 97.6 0.00015 3.3E-09 77.3 7.2 24 23-46 31-54 (334)
291 PRK15056 manganese/iron transp 97.6 6.3E-05 1.4E-09 78.2 4.3 49 9-57 19-71 (272)
292 cd03251 ABCC_MsbA MsbA is an e 97.6 5.3E-05 1.1E-09 76.7 3.6 48 11-58 16-67 (234)
293 PRK14265 phosphate ABC transpo 97.6 6.2E-05 1.3E-09 78.4 4.1 51 8-58 31-90 (274)
294 PRK05564 DNA polymerase III su 97.6 0.00043 9.3E-09 73.5 10.6 47 183-236 112-161 (313)
295 PRK11000 maltose/maltodextrin 97.6 6E-05 1.3E-09 81.9 4.1 51 8-58 14-68 (369)
296 cd03233 ABC_PDR_domain1 The pl 97.6 6E-05 1.3E-09 74.8 3.8 49 9-57 19-74 (202)
297 TIGR02974 phageshock_pspF psp 97.5 0.0004 8.6E-09 74.3 10.3 69 21-89 22-106 (329)
298 PRK14251 phosphate ABC transpo 97.5 6.6E-05 1.4E-09 76.9 4.2 50 8-57 15-73 (251)
299 PRK09452 potA putrescine/sperm 97.5 5.8E-05 1.2E-09 82.1 4.0 51 8-58 25-79 (375)
300 cd03245 ABCC_bacteriocin_expor 97.5 5.5E-05 1.2E-09 75.8 3.6 48 10-57 17-68 (220)
301 PRK14237 phosphate transporter 97.5 6.4E-05 1.4E-09 77.9 4.1 50 8-57 31-89 (267)
302 PRK13536 nodulation factor exp 97.5 6.2E-05 1.3E-09 80.8 4.1 52 7-58 51-106 (340)
303 cd03231 ABC_CcmA_heme_exporter 97.5 7E-05 1.5E-09 74.2 4.2 50 8-57 11-64 (201)
304 PRK11231 fecE iron-dicitrate t 97.5 5.7E-05 1.2E-09 77.6 3.7 51 8-58 13-67 (255)
305 PRK07471 DNA polymerase III su 97.5 0.00041 9E-09 75.1 10.4 47 183-236 160-209 (365)
306 PRK11614 livF leucine/isoleuci 97.5 6.7E-05 1.4E-09 76.2 4.1 50 8-57 16-69 (237)
307 COG1131 CcmA ABC-type multidru 97.5 7E-05 1.5E-09 78.7 4.4 54 5-58 12-70 (293)
308 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.5 6.5E-05 1.4E-09 75.8 4.0 49 8-56 33-85 (224)
309 PRK13537 nodulation ABC transp 97.5 6.6E-05 1.4E-09 79.5 4.2 52 7-58 17-72 (306)
310 PRK14269 phosphate ABC transpo 97.5 6.9E-05 1.5E-09 76.6 4.2 51 8-58 13-70 (246)
311 TIGR00972 3a0107s01c2 phosphat 97.5 7E-05 1.5E-09 76.6 4.2 50 8-57 12-70 (247)
312 TIGR03873 F420-0_ABC_ATP propo 97.5 7.3E-05 1.6E-09 76.9 4.3 51 8-58 12-66 (256)
313 PRK14255 phosphate ABC transpo 97.5 7.1E-05 1.5E-09 76.7 4.1 50 8-57 16-74 (252)
314 KOG0651|consensus 97.5 4.8E-05 1E-09 78.3 2.8 108 280-402 197-305 (388)
315 PRK14270 phosphate ABC transpo 97.5 7.6E-05 1.6E-09 76.5 4.3 51 8-58 15-74 (251)
316 cd03253 ABCC_ATM1_transporter 97.5 8.3E-05 1.8E-09 75.4 4.5 49 10-58 14-66 (236)
317 PRK14253 phosphate ABC transpo 97.5 7.5E-05 1.6E-09 76.4 4.3 50 8-57 14-72 (249)
318 cd03215 ABC_Carb_Monos_II This 97.5 7.3E-05 1.6E-09 72.8 4.0 47 12-58 15-65 (182)
319 PRK14249 phosphate ABC transpo 97.5 6.3E-05 1.4E-09 77.1 3.6 50 8-57 15-73 (251)
320 PRK09984 phosphonate/organopho 97.5 7.4E-05 1.6E-09 77.1 4.1 51 8-58 15-72 (262)
321 PRK10865 protein disaggregatio 97.5 0.00031 6.8E-09 84.1 10.0 35 24-58 601-638 (857)
322 cd03244 ABCC_MRP_domain2 Domai 97.5 6E-05 1.3E-09 75.6 3.4 49 10-58 17-69 (221)
323 PRK13647 cbiO cobalt transport 97.5 5E-05 1.1E-09 79.1 2.8 48 10-57 18-69 (274)
324 PRK14971 DNA polymerase III su 97.5 0.00044 9.6E-09 79.7 10.8 27 20-46 38-64 (614)
325 COG0593 DnaA ATPase involved i 97.5 0.00076 1.6E-08 73.3 11.9 67 24-92 116-191 (408)
326 cd03223 ABCD_peroxisomal_ALDP 97.5 9.9E-05 2.1E-09 70.9 4.7 45 10-54 14-62 (166)
327 PRK10851 sulfate/thiosulfate t 97.5 7.2E-05 1.6E-09 80.7 4.1 51 8-58 13-67 (353)
328 PRK14240 phosphate transporter 97.5 7.7E-05 1.7E-09 76.4 4.1 51 8-58 14-73 (250)
329 PRK14263 phosphate ABC transpo 97.5 7.3E-05 1.6E-09 77.3 4.0 52 7-58 18-78 (261)
330 TIGR02769 nickel_nikE nickel i 97.5 8.3E-05 1.8E-09 77.0 4.4 48 10-57 24-75 (265)
331 PRK08181 transposase; Validate 97.5 0.00014 3.1E-09 75.3 6.1 69 21-89 106-180 (269)
332 PRK14248 phosphate ABC transpo 97.5 8.1E-05 1.8E-09 77.1 4.2 50 8-57 32-90 (268)
333 PRK11701 phnK phosphonate C-P 97.5 8.6E-05 1.9E-09 76.5 4.4 48 9-56 18-69 (258)
334 PRK09580 sufC cysteine desulfu 97.5 8.5E-05 1.8E-09 75.9 4.3 49 9-57 13-67 (248)
335 PTZ00454 26S protease regulato 97.5 5.9E-05 1.3E-09 82.5 3.3 166 280-466 210-382 (398)
336 cd03252 ABCC_Hemolysin The ABC 97.5 9.3E-05 2E-09 75.1 4.5 49 10-58 15-67 (237)
337 PRK09536 btuD corrinoid ABC tr 97.5 6.1E-05 1.3E-09 82.5 3.4 51 8-58 14-68 (402)
338 PRK11607 potG putrescine trans 97.5 7.3E-05 1.6E-09 81.4 4.0 51 8-58 30-84 (377)
339 PRK09112 DNA polymerase III su 97.5 0.00054 1.2E-08 73.8 10.6 47 183-236 160-209 (351)
340 PRK14272 phosphate ABC transpo 97.5 8.6E-05 1.9E-09 76.1 4.3 50 8-57 15-73 (252)
341 PRK14259 phosphate ABC transpo 97.5 8.2E-05 1.8E-09 77.2 4.2 50 8-57 24-82 (269)
342 PRK14245 phosphate ABC transpo 97.5 7.4E-05 1.6E-09 76.5 3.7 51 8-58 14-73 (250)
343 cd03250 ABCC_MRP_domain1 Domai 97.5 9.5E-05 2.1E-09 73.3 4.4 44 11-54 19-66 (204)
344 TIGR02868 CydC thiol reductant 97.5 7.1E-05 1.5E-09 85.2 3.9 50 10-59 348-401 (529)
345 PRK10619 histidine/lysine/argi 97.5 8.5E-05 1.8E-09 76.5 4.1 50 8-57 16-69 (257)
346 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0005 1.1E-08 82.5 11.2 66 24-89 598-680 (852)
347 cd03248 ABCC_TAP TAP, the Tran 97.5 7.7E-05 1.7E-09 75.1 3.7 48 11-58 28-79 (226)
348 TIGR03740 galliderm_ABC gallid 97.5 9.1E-05 2E-09 74.5 4.2 50 8-57 11-64 (223)
349 PRK14260 phosphate ABC transpo 97.5 8.6E-05 1.9E-09 76.6 4.1 50 8-57 18-76 (259)
350 PRK14271 phosphate ABC transpo 97.5 8.4E-05 1.8E-09 77.5 4.1 51 7-57 31-90 (276)
351 PRK15112 antimicrobial peptide 97.5 9.5E-05 2.1E-09 76.6 4.4 47 11-57 27-77 (267)
352 cd03232 ABC_PDR_domain2 The pl 97.5 8.9E-05 1.9E-09 72.9 4.0 48 10-57 20-73 (192)
353 TIGR03522 GldA_ABC_ATP gliding 97.5 8.2E-05 1.8E-09 78.5 4.0 51 8-58 13-67 (301)
354 PRK06964 DNA polymerase III su 97.5 0.00036 7.8E-09 74.7 8.8 47 183-236 151-200 (342)
355 cd03267 ABC_NatA_like Similar 97.5 9.2E-05 2E-09 75.2 4.2 48 9-56 33-84 (236)
356 COG0542 clpA ATP-binding subun 97.5 0.00015 3.3E-09 83.9 6.4 68 21-88 520-605 (786)
357 PRK14243 phosphate transporter 97.5 9.1E-05 2E-09 76.6 4.2 50 8-57 21-79 (264)
358 cd03369 ABCC_NFT1 Domain 2 of 97.5 7.4E-05 1.6E-09 74.2 3.4 48 11-58 22-73 (207)
359 PRK13541 cytochrome c biogenes 97.5 0.0001 2.2E-09 72.7 4.3 48 9-57 13-64 (195)
360 PRK13644 cbiO cobalt transport 97.5 9.5E-05 2.1E-09 77.0 4.2 48 10-57 15-66 (274)
361 cd03300 ABC_PotA_N PotA is an 97.5 0.0001 2.2E-09 74.7 4.3 50 9-58 12-65 (232)
362 COG4167 SapF ABC-type antimicr 97.5 8.5E-05 1.8E-09 71.2 3.4 64 11-74 27-94 (267)
363 TIGR01184 ntrCD nitrate transp 97.5 9.8E-05 2.1E-09 74.8 4.1 45 13-57 1-49 (230)
364 PRK14236 phosphate transporter 97.5 9.1E-05 2E-09 77.0 4.0 50 8-57 36-94 (272)
365 COG1223 Predicted ATPase (AAA+ 97.5 2.2E-05 4.8E-10 78.8 -0.6 103 282-402 184-286 (368)
366 PRK14239 phosphate transporter 97.5 9.4E-05 2E-09 75.8 4.0 50 8-57 16-74 (252)
367 PRK14266 phosphate ABC transpo 97.5 9.4E-05 2E-09 75.7 4.0 51 8-58 14-73 (250)
368 PRK13635 cbiO cobalt transport 97.5 6.1E-05 1.3E-09 78.6 2.6 49 10-58 20-72 (279)
369 PRK14275 phosphate ABC transpo 97.5 9.5E-05 2.1E-09 77.5 4.1 50 9-58 51-109 (286)
370 PRK13632 cbiO cobalt transport 97.5 0.0001 2.2E-09 76.6 4.2 48 10-57 22-73 (271)
371 PRK10418 nikD nickel transport 97.5 0.00011 2.3E-09 75.6 4.3 49 9-57 15-71 (254)
372 cd03234 ABCG_White The White s 97.5 0.00011 2.3E-09 74.2 4.2 48 10-57 20-74 (226)
373 TIGR03258 PhnT 2-aminoethylpho 97.5 9.4E-05 2E-09 80.1 4.0 51 8-58 16-72 (362)
374 PRK11153 metN DL-methionine tr 97.5 9.5E-05 2.1E-09 79.5 4.1 49 10-58 18-70 (343)
375 PRK14268 phosphate ABC transpo 97.5 9.9E-05 2.2E-09 76.0 4.1 50 8-57 23-81 (258)
376 PRK13645 cbiO cobalt transport 97.5 0.0001 2.2E-09 77.4 4.1 47 11-57 25-75 (289)
377 TIGR02770 nickel_nikD nickel i 97.5 0.0001 2.3E-09 74.5 4.1 46 12-57 1-54 (230)
378 CHL00131 ycf16 sulfate ABC tra 97.5 0.00011 2.3E-09 75.4 4.2 49 9-57 19-73 (252)
379 TIGR02031 BchD-ChlD magnesium 97.4 0.00038 8.3E-09 80.0 9.2 67 23-89 18-97 (589)
380 PRK13652 cbiO cobalt transport 97.4 0.00011 2.3E-09 76.7 4.2 48 10-57 17-68 (277)
381 PRK13646 cbiO cobalt transport 97.4 0.0001 2.2E-09 77.3 4.0 48 11-58 21-72 (286)
382 PRK13649 cbiO cobalt transport 97.4 9.5E-05 2.1E-09 77.1 3.8 47 11-57 21-71 (280)
383 PRK13650 cbiO cobalt transport 97.4 7.1E-05 1.5E-09 78.1 2.9 47 11-57 21-71 (279)
384 PRK10070 glycine betaine trans 97.4 9.6E-05 2.1E-09 80.9 3.9 50 9-58 40-93 (400)
385 TIGR01817 nifA Nif-specific re 97.4 0.001 2.3E-08 75.8 12.5 69 21-89 219-303 (534)
386 PRK13639 cbiO cobalt transport 97.4 0.00011 2.3E-09 76.6 4.1 48 10-57 15-66 (275)
387 PRK05201 hslU ATP-dependent pr 97.4 0.00012 2.5E-09 79.6 4.4 54 21-74 50-105 (443)
388 TIGR00968 3a0106s01 sulfate AB 97.4 0.0001 2.3E-09 74.9 3.9 50 8-57 11-64 (237)
389 PRK13648 cbiO cobalt transport 97.4 0.00011 2.3E-09 76.3 4.0 47 11-57 23-73 (269)
390 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00022 4.7E-09 85.3 7.1 69 21-89 595-681 (852)
391 TIGR02314 ABC_MetN D-methionin 97.4 0.00011 2.3E-09 79.0 4.0 49 10-58 18-70 (343)
392 PRK10419 nikE nickel transport 97.4 0.00012 2.6E-09 75.9 4.3 48 10-57 25-76 (268)
393 cd03213 ABCG_EPDR ABCG transpo 97.4 0.00012 2.7E-09 72.0 4.1 49 10-58 22-76 (194)
394 PRK14254 phosphate ABC transpo 97.4 0.00012 2.6E-09 76.7 4.1 50 8-57 50-108 (285)
395 PRK09544 znuC high-affinity zi 97.4 0.00013 2.8E-09 75.0 4.3 46 8-53 15-64 (251)
396 TIGR02030 BchI-ChlI magnesium 97.4 0.00034 7.4E-09 74.8 7.6 23 23-45 27-49 (337)
397 PRK06526 transposase; Provisio 97.4 0.00016 3.4E-09 74.4 4.9 69 21-89 98-172 (254)
398 PRK08058 DNA polymerase III su 97.4 0.00059 1.3E-08 73.0 9.4 47 183-236 129-178 (329)
399 PRK08699 DNA polymerase III su 97.4 0.00051 1.1E-08 73.3 8.8 47 183-236 132-181 (325)
400 PRK13643 cbiO cobalt transport 97.4 0.00013 2.7E-09 76.6 4.1 47 11-57 20-70 (288)
401 PRK13633 cobalt transporter AT 97.4 0.00013 2.9E-09 76.1 4.2 48 10-57 23-74 (280)
402 PRK13641 cbiO cobalt transport 97.4 0.00012 2.7E-09 76.6 4.0 47 11-57 21-71 (287)
403 PRK13636 cbiO cobalt transport 97.4 0.00014 3.1E-09 76.0 4.3 49 9-57 18-70 (283)
404 PRK13637 cbiO cobalt transport 97.4 0.00013 2.8E-09 76.5 4.0 48 11-58 21-72 (287)
405 TIGR02982 heterocyst_DevA ABC 97.4 0.00015 3.2E-09 72.9 4.2 49 10-58 18-70 (220)
406 PRK13640 cbiO cobalt transport 97.4 8.6E-05 1.9E-09 77.6 2.6 48 11-58 21-75 (282)
407 TIGR03415 ABC_choXWV_ATP choli 97.4 0.00013 2.7E-09 79.4 3.9 53 3-55 30-86 (382)
408 PRK15177 Vi polysaccharide exp 97.4 0.00015 3.2E-09 72.7 4.0 40 12-51 2-45 (213)
409 PRK09700 D-allose transporter 97.4 0.00013 2.9E-09 82.6 4.0 51 7-57 15-69 (510)
410 KOG0057|consensus 97.4 0.0002 4.4E-09 78.9 5.1 76 6-85 361-441 (591)
411 PRK13634 cbiO cobalt transport 97.4 0.00015 3.2E-09 76.2 4.0 47 11-57 21-71 (290)
412 PRK10762 D-ribose transporter 97.4 0.00014 3.1E-09 82.2 4.1 50 8-57 15-68 (501)
413 TIGR02442 Cob-chelat-sub cobal 97.4 0.0013 2.9E-08 76.4 12.2 24 22-45 26-49 (633)
414 PRK15093 antimicrobial peptide 97.4 0.00015 3.3E-09 77.6 4.1 49 10-58 20-76 (330)
415 PRK08116 hypothetical protein; 97.4 0.00039 8.4E-09 72.2 7.0 38 21-58 114-154 (268)
416 PRK11608 pspF phage shock prot 97.4 0.00088 1.9E-08 71.6 9.9 69 21-89 29-113 (326)
417 PRK13546 teichoic acids export 97.3 0.00018 3.8E-09 74.6 4.3 47 8-54 35-85 (264)
418 PRK09862 putative ATP-dependen 97.3 0.00065 1.4E-08 76.2 9.0 39 8-46 195-235 (506)
419 COG1134 TagH ABC-type polysacc 97.3 0.00018 3.9E-09 72.2 4.1 48 9-56 39-90 (249)
420 TIGR02324 CP_lyasePhnL phospho 97.3 0.00019 4E-09 72.2 4.3 44 10-53 21-68 (224)
421 CHL00095 clpC Clp protease ATP 97.3 0.00034 7.3E-09 83.7 7.1 66 24-89 542-624 (821)
422 cd03288 ABCC_SUR2 The SUR doma 97.3 0.00014 3E-09 75.0 3.4 49 10-58 34-86 (257)
423 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00018 4E-09 63.8 3.6 44 11-58 3-48 (107)
424 COG1123 ATPase components of v 97.3 0.00019 4.1E-09 80.1 4.6 78 10-93 304-385 (539)
425 PRK10636 putative ABC transpor 97.3 0.00017 3.7E-09 83.9 4.4 49 7-55 11-63 (638)
426 cd03238 ABC_UvrA The excision 97.3 0.00013 2.8E-09 70.9 2.8 34 10-43 8-43 (176)
427 PRK11022 dppD dipeptide transp 97.3 0.00018 3.9E-09 76.9 4.2 48 11-58 21-76 (326)
428 PRK13549 xylose transporter AT 97.3 0.00016 3.4E-09 82.0 4.0 50 8-57 16-71 (506)
429 PRK14252 phosphate ABC transpo 97.3 0.00019 4.2E-09 74.2 4.3 48 9-56 28-84 (265)
430 PRK13631 cbiO cobalt transport 97.3 0.00018 3.8E-09 76.7 4.1 47 11-57 40-90 (320)
431 PRK10938 putative molybdenum t 97.3 0.00016 3.5E-09 81.5 3.9 50 8-57 14-67 (490)
432 PF05621 TniB: Bacterial TniB 97.3 0.002 4.4E-08 67.1 11.6 38 271-317 245-282 (302)
433 PRK14246 phosphate ABC transpo 97.3 0.00019 4.2E-09 73.9 4.2 48 7-54 20-71 (257)
434 PRK13651 cobalt transporter AT 97.3 0.00018 4E-09 76.0 4.0 46 11-56 21-70 (305)
435 PRK14258 phosphate ABC transpo 97.3 0.0002 4.4E-09 73.9 4.2 50 8-57 18-76 (261)
436 PF13173 AAA_14: AAA domain 97.3 0.0003 6.5E-09 64.5 4.9 66 24-89 5-74 (128)
437 PRK14264 phosphate ABC transpo 97.3 0.0002 4.3E-09 75.8 4.1 50 8-57 56-114 (305)
438 PF13207 AAA_17: AAA domain; P 97.3 0.00016 3.5E-09 65.0 2.9 29 24-52 2-30 (121)
439 COG0444 DppD ABC-type dipeptid 97.3 0.00022 4.9E-09 74.3 4.3 80 10-93 18-106 (316)
440 PRK15439 autoinducer 2 ABC tra 97.3 0.00018 4E-09 81.5 4.0 50 8-57 22-75 (510)
441 PTZ00361 26 proteosome regulat 97.3 0.00011 2.3E-09 81.2 1.9 166 280-466 248-420 (438)
442 PRK09473 oppD oligopeptide tra 97.3 0.00031 6.8E-09 75.1 5.5 49 10-58 29-84 (330)
443 TIGR01277 thiQ thiamine ABC tr 97.3 0.00021 4.6E-09 71.3 3.9 46 12-57 13-62 (213)
444 PRK14257 phosphate ABC transpo 97.3 0.00018 4E-09 76.9 3.6 49 10-58 95-152 (329)
445 PRK10982 galactose/methyl gala 97.3 0.0002 4.4E-09 80.7 4.2 51 7-57 8-62 (491)
446 PRK11176 lipid transporter ATP 97.3 0.0002 4.3E-09 82.5 4.1 49 10-58 356-408 (582)
447 PRK11147 ABC transporter ATPas 97.2 0.00022 4.8E-09 83.0 4.3 48 7-54 13-64 (635)
448 PRK15079 oligopeptide ABC tran 97.2 0.00024 5.3E-09 76.0 4.1 49 10-58 34-86 (331)
449 PRK11308 dppF dipeptide transp 97.2 0.00026 5.6E-09 75.7 4.3 49 10-58 28-80 (327)
450 cd03299 ABC_ModC_like Archeal 97.2 0.00025 5.4E-09 72.0 3.9 48 11-58 13-64 (235)
451 COG4988 CydD ABC-type transpor 97.2 0.00035 7.5E-09 77.9 5.2 72 9-82 333-408 (559)
452 PRK13642 cbiO cobalt transport 97.2 0.00026 5.6E-09 73.8 4.1 47 11-57 21-71 (277)
453 cd03298 ABC_ThiQ_thiamine_tran 97.2 0.00027 5.8E-09 70.4 4.0 43 15-57 16-62 (211)
454 TIGR03238 dnd_assoc_3 dnd syst 97.2 0.00022 4.8E-09 78.4 3.7 63 11-74 20-85 (504)
455 COG1132 MdlB ABC-type multidru 97.2 0.00028 6.2E-09 81.0 4.7 73 9-83 341-417 (567)
456 TIGR02633 xylG D-xylose ABC tr 97.2 0.00023 5.1E-09 80.4 4.0 50 8-57 12-67 (500)
457 PRK11288 araG L-arabinose tran 97.2 0.00025 5.3E-09 80.3 4.1 50 8-57 15-68 (501)
458 cd03291 ABCC_CFTR1 The CFTR su 97.2 0.0003 6.6E-09 73.6 4.4 46 9-54 49-98 (282)
459 COG1135 AbcC ABC-type metal io 97.2 0.00025 5.3E-09 73.4 3.6 50 10-59 19-72 (339)
460 TIGR01193 bacteriocin_ABC ABC- 97.2 0.00023 4.9E-09 84.1 3.9 50 9-58 486-539 (708)
461 TIGR00602 rad24 checkpoint pro 97.2 0.00071 1.5E-08 77.9 7.7 26 24-49 113-138 (637)
462 PRK15064 ABC transporter ATP-b 97.2 0.00028 6.2E-09 80.4 4.5 47 8-54 12-62 (530)
463 COG2274 SunT ABC-type bacterio 97.2 0.00025 5.4E-09 82.8 3.9 49 10-58 486-538 (709)
464 PRK07993 DNA polymerase III su 97.2 0.0021 4.5E-08 68.9 10.7 47 183-236 127-176 (334)
465 PRK10771 thiQ thiamine transpo 97.2 0.00029 6.4E-09 71.3 4.0 44 14-57 16-63 (232)
466 PRK03695 vitamin B12-transport 97.2 0.00028 6E-09 72.4 3.8 47 11-57 10-59 (248)
467 PRK10790 putative multidrug tr 97.2 0.00024 5.3E-09 82.0 3.7 49 10-58 354-406 (592)
468 PRK11174 cysteine/glutathione 97.2 0.00036 7.8E-09 80.5 5.1 51 8-58 361-414 (588)
469 TIGR03797 NHPM_micro_ABC2 NHPM 97.2 0.00021 4.5E-09 84.0 3.2 50 9-58 465-518 (686)
470 PRK06871 DNA polymerase III su 97.2 0.0021 4.6E-08 68.3 10.4 47 183-236 126-175 (325)
471 PRK13657 cyclic beta-1,2-gluca 97.2 0.00024 5.2E-09 82.0 3.5 49 10-58 348-400 (588)
472 TIGR03796 NHPM_micro_ABC1 NHPM 97.2 0.00026 5.6E-09 83.6 3.7 49 10-58 492-544 (710)
473 COG2812 DnaX DNA polymerase II 97.2 0.0012 2.7E-08 73.7 8.8 82 183-290 138-222 (515)
474 COG4586 ABC-type uncharacteriz 97.2 0.00031 6.8E-09 71.4 3.7 48 11-58 38-89 (325)
475 PRK05022 anaerobic nitric oxid 97.2 0.0016 3.6E-08 73.8 10.0 68 21-89 210-294 (509)
476 cd03289 ABCC_CFTR2 The CFTR su 97.2 0.00028 6.1E-09 73.5 3.5 49 10-58 17-68 (275)
477 PRK08118 topology modulation p 97.2 0.0003 6.4E-09 67.8 3.4 32 23-54 3-34 (167)
478 COG4152 ABC-type uncharacteriz 97.2 0.00031 6.7E-09 70.4 3.5 56 3-58 8-67 (300)
479 PRK11144 modC molybdate transp 97.2 0.00032 6.9E-09 75.8 3.9 44 15-58 16-63 (352)
480 TIGR02142 modC_ABC molybdenum 97.2 0.00033 7.1E-09 75.7 4.0 44 15-58 15-62 (354)
481 PRK11819 putative ABC transpor 97.1 0.00036 7.8E-09 80.0 4.5 45 9-53 19-67 (556)
482 COG4181 Predicted ABC-type tra 97.1 0.00036 7.7E-09 66.4 3.7 51 10-60 23-77 (228)
483 PRK10522 multidrug transporter 97.1 0.00023 5E-09 81.4 2.9 49 10-58 336-388 (547)
484 CHL00081 chlI Mg-protoporyphyr 97.1 0.00084 1.8E-08 72.0 6.9 24 22-45 39-62 (350)
485 PRK10938 putative molybdenum t 97.1 0.00038 8.1E-09 78.6 4.4 49 8-56 271-324 (490)
486 TIGR00958 3a01208 Conjugate Tr 97.1 0.00033 7.1E-09 82.7 4.0 49 10-58 494-546 (711)
487 PF13401 AAA_22: AAA domain; P 97.1 0.0007 1.5E-08 61.5 5.3 22 24-45 7-28 (131)
488 TIGR02857 CydD thiol reductant 97.1 0.00032 6.9E-09 79.9 3.7 48 11-58 336-387 (529)
489 PRK11160 cysteine/glutathione 97.1 0.00033 7.2E-09 80.6 3.8 49 10-58 353-405 (574)
490 KOG0055|consensus 97.1 0.00094 2E-08 80.4 7.5 50 10-59 1003-1056(1228)
491 COG4618 ArpD ABC-type protease 97.1 0.00038 8.2E-09 76.2 3.8 52 9-60 348-403 (580)
492 KOG0055|consensus 97.1 0.00039 8.4E-09 83.6 4.2 54 6-59 360-419 (1228)
493 COG2204 AtoC Response regulato 97.1 0.0016 3.5E-08 71.8 8.7 68 21-89 164-248 (464)
494 TIGR03719 ABC_ABC_ChvD ATP-bin 97.1 0.00046 9.9E-09 79.1 4.6 45 9-53 17-65 (552)
495 PRK03992 proteasome-activating 97.1 0.00037 8E-09 76.3 3.7 166 280-466 196-368 (389)
496 COG1119 ModF ABC-type molybden 97.1 0.00053 1.1E-08 69.0 4.4 49 7-55 41-93 (257)
497 KOG0056|consensus 97.1 0.00066 1.4E-08 73.8 5.4 74 8-85 549-628 (790)
498 TIGR03269 met_CoM_red_A2 methy 97.1 0.00043 9.3E-09 78.7 4.2 46 8-53 11-62 (520)
499 PRK15064 ABC transporter ATP-b 97.1 0.00045 9.7E-09 78.8 4.3 47 8-54 330-380 (530)
500 PRK08769 DNA polymerase III su 97.1 0.0049 1.1E-07 65.5 11.8 47 183-236 132-181 (319)
No 1
>KOG0734|consensus
Probab=100.00 E-value=4.9e-64 Score=529.18 Aligned_cols=400 Identities=27% Similarity=0.342 Sum_probs=340.0
Q ss_pred cccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcc
Q psy10020 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLH 77 (640)
Q Consensus 2 eiv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p 77 (640)
||+.|+++|.-|..+|-.+|+|+||+||||||||.|+|++|++.+.||+..+++++-..++|..+++++.+|. .+|
T Consensus 318 EiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~AP 397 (752)
T KOG0734|consen 318 EIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAP 397 (752)
T ss_pred HHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred cccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHH
Q psy10020 78 CRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQ 157 (640)
Q Consensus 78 ~il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (640)
|||||||+|+++.+|.. ++.+ .+ ++
T Consensus 398 cIIFIDEiDavG~kR~~-----------------------~~~~-y~-------------------------------kq 422 (752)
T KOG0734|consen 398 CIIFIDEIDAVGGKRNP-----------------------SDQH-YA-------------------------------KQ 422 (752)
T ss_pred eEEEEechhhhcccCCc-----------------------cHHH-HH-------------------------------HH
Confidence 99999999999988861 1111 11 78
Q ss_pred HhhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc---
Q psy10020 158 CLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN--- 228 (640)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~--- 228 (640)
++| +||.+|||+.. +++||| |||||+|+.||+||.| ++.|++||
T Consensus 423 TlN----------------------QLLvEmDGF~q----NeGiIv-igATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~G 475 (752)
T KOG0734|consen 423 TLN----------------------QLLVEMDGFKQ----NEGIIV-IGATNFPEALDKALTRPGRFDRHVTVPLPDVRG 475 (752)
T ss_pred HHH----------------------HHHHHhcCcCc----CCceEE-EeccCChhhhhHHhcCCCccceeEecCCCCccc
Confidence 899 99999999999 999999 9999999999999999 99999999
Q ss_pred -HHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhcc
Q psy10020 229 -REIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNL 307 (640)
Q Consensus 229 -~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~ 307 (640)
.+|++.|+ +++.. +.++|++-||+-|+||||+|++++++ .+|+++|.++
T Consensus 476 R~eIL~~yl-~ki~~----------------------~~~VD~~iiARGT~GFsGAdLaNlVN-------qAAlkAa~dg 525 (752)
T KOG0734|consen 476 RTEILKLYL-SKIPL----------------------DEDVDPKIIARGTPGFSGADLANLVN-------QAALKAAVDG 525 (752)
T ss_pred HHHHHHHHH-hcCCc----------------------ccCCCHhHhccCCCCCchHHHHHHHH-------HHHHHHHhcC
Confidence 88999999 55554 56899999999999999999999999 9999999999
Q ss_pred CcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEec
Q psy10020 308 EKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVP 387 (640)
Q Consensus 308 ~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P 387 (640)
+..+ ++.++ +.|-|+++.|.++++..++ ++.+.++||||+||||+|.+++.+.|+.||+|.|
T Consensus 526 a~~V-tM~~L--E~akDrIlMG~ERks~~i~---------------~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImP 587 (752)
T KOG0734|consen 526 AEMV-TMKHL--EFAKDRILMGPERKSMVID---------------EEAKKITAYHEGGHAIVALYTKGAMPLHKATIMP 587 (752)
T ss_pred cccc-cHHHH--hhhhhheeecccccccccC---------------hhhhhhhhhhccCceEEEeecCCCccccceeecc
Confidence 9998 99999 9999999999999988887 8889999999999999999999999999999999
Q ss_pred CCCCccceEEEcCC-ccccCCHHHHhhhhhhhccccccceEEec--cccchhhhhHHHHHHHHHHHhchhhhcccCCCCc
Q psy10020 388 RTSLALGFAQYTPS-EQKLYNKEEIFSPIDTSRSHRVLRKWVLS--SLLTVNKFASLVCRQVAFHESGHALVGWLLPHTD 464 (640)
Q Consensus 388 ~g~~~~g~~~~l~~-~~~~~t~~~l~~~i~~~l~G~aAE~ii~g--~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e 464 (640)
||+ ++|.+.++|+ +++..||.+++++++++|+||+||+++|| .+|+||.-+-..|...|- +-+..+.| +|
T Consensus 588 RG~-sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~----~MVt~fGM--Sd 660 (752)
T KOG0734|consen 588 RGP-SLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLAR----RMVTKFGM--SD 660 (752)
T ss_pred CCc-cccceeecCccchhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHH----HHHHHcCc--cc
Confidence 976 9999999998 67789999999999999999999999999 589998655555555542 22233347 77
Q ss_pred ccceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccccccC
Q psy10020 465 ALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYN 544 (640)
Q Consensus 465 ~v~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~~~~t 544 (640)
.|..|++...+.+. -..|+...
T Consensus 661 ~vG~v~~~~~~~~~----s~~~~t~~------------------------------------------------------ 682 (752)
T KOG0734|consen 661 KVGPVTLSAEDNSS----SLSPRTQE------------------------------------------------------ 682 (752)
T ss_pred cccceeeeccCCCC----CCCchhHH------------------------------------------------------
Confidence 77777664322100 01111111
Q ss_pred hHhhhcchHHhhhcccCC--cchHHhhHHHHHHHHHHhHhHhcCCHHHHHHHhcCCC
Q psy10020 545 KEETLDPKKEMTVNREQP--PSHDKKKRKCLTEISVTTMVLSSLNRREKEDRIGESQ 599 (640)
Q Consensus 545 ~~~~~~~i~~~~~~r~~~--~~~~~~~r~~l~~l~~~ll~~ETL~~~ei~~i~~~~~ 599 (640)
+.+.-...+....++ ..|...|..+++.||++|++||||+.+||++++++.+
T Consensus 683 ---lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~~ 736 (752)
T KOG0734|consen 683 ---LIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGKS 736 (752)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccc
Confidence 111111122222223 5677889999999999999999999999999999863
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-57 Score=501.82 Aligned_cols=410 Identities=31% Similarity=0.409 Sum_probs=343.3
Q ss_pred cccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcc
Q psy10020 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLH 77 (640)
Q Consensus 2 eiv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p 77 (640)
|+++|+++|.-|..+|..+|+|++|+||||||||+|+|++|++.+.|++.++++++..+++|-...++|.+|. ++|
T Consensus 164 EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP 243 (596)
T COG0465 164 ELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAP 243 (596)
T ss_pred HHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998 789
Q ss_pred cccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHH
Q psy10020 78 CRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQ 157 (640)
Q Consensus 78 ~il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (640)
||+||||+|+++..|+ .+.|++|+++ ++
T Consensus 244 ~IIFIDEiDAvGr~Rg------------------~g~Gggnder----------------------------------EQ 271 (596)
T COG0465 244 CIIFIDEIDAVGRQRG------------------AGLGGGNDER----------------------------------EQ 271 (596)
T ss_pred CeEEEehhhhcccccC------------------CCCCCCchHH----------------------------------HH
Confidence 9999999999998886 1245789999 56
Q ss_pred HhhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc---
Q psy10020 158 CLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN--- 228 (640)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~--- 228 (640)
++| ++|.+|||+.. +++|+| +++||||+.+||||+| ++.+++||
T Consensus 272 TLN----------------------QlLvEmDGF~~----~~gviv-iaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 272 TLN----------------------QLLVEMDGFGG----NEGVIV-IAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred HHH----------------------HHHhhhccCCC----CCceEE-EecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 677 88899999888 899999 9999999999999999 99999999
Q ss_pred -HHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhcc
Q psy10020 229 -REIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNL 307 (640)
Q Consensus 229 -~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~ 307 (640)
.+|++.|+ ++. +++.++|+..+|+.|+||||+|+.++++ ++++.++|.+
T Consensus 325 Re~IlkvH~-~~~----------------------~l~~~Vdl~~iAr~tpGfsGAdL~nl~N-------EAal~aar~n 374 (596)
T COG0465 325 REQILKVHA-KNK----------------------PLAEDVDLKKIARGTPGFSGADLANLLN-------EAALLAARRN 374 (596)
T ss_pred HHHHHHHHh-hcC----------------------CCCCcCCHHHHhhhCCCcccchHhhhHH-------HHHHHHHHhc
Confidence 45555555 333 3457899999999999999999999999 9999999999
Q ss_pred CcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEec
Q psy10020 308 EKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVP 387 (640)
Q Consensus 308 ~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P 387 (640)
...+ ++.|| +++++++..|.++++.+++ +.++..+||||+|||++++.++..|++++++|+|
T Consensus 375 ~~~i-~~~~i--~ea~drv~~G~erks~vis---------------e~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiP 436 (596)
T COG0465 375 KKEI-TMRDI--EEAIDRVIAGPERKSRVIS---------------EAEKKITAYHEAGHALVGLLLPDADPVHKVTIIP 436 (596)
T ss_pred CeeE-eccch--HHHHHHHhcCcCcCCcccC---------------hhhhcchHHHHHHHHHHHHhCCCCcccceeeecc
Confidence 9998 99999 9999999999999998888 8999999999999999999999999999999999
Q ss_pred CCCCccceEEEcCCc-cccCCHHHHhhhhhhhccccccceEEec-cccchhhhhHHHHHHHH---HHHhchhhhcccCCC
Q psy10020 388 RTSLALGFAQYTPSE-QKLYNKEEIFSPIDTSRSHRVLRKWVLS-SLLTVNKFASLVCRQVA---FHESGHALVGWLLPH 462 (640)
Q Consensus 388 ~g~~~~g~~~~l~~~-~~~~t~~~l~~~i~~~l~G~aAE~ii~g-~~ttGA~l~~n~~~~~A---~~e~gha~~~~~~~~ 462 (640)
+| .++||++++|.+ +.+.++.+++++++++++||+||+++|| +.|+||..+-..+...| +.++| |
T Consensus 437 rG-~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D~~~at~~ar~mVt~~G-------m-- 506 (596)
T COG0465 437 RG-RALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLARAMVTEYG-------M-- 506 (596)
T ss_pred Cc-hhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcccccccchhhHHHHHHHHHHhhhhcC-------c--
Confidence 97 699999999986 8899999999999999999999999999 99999966444444333 24444 6
Q ss_pred CcccceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccccc
Q psy10020 463 TDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKL 542 (640)
Q Consensus 463 ~e~v~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~~~ 542 (640)
++.+..+.........+|+.. +...++
T Consensus 507 s~~lG~v~~~~~~~~flg~~~-----------------------------------------------------~~~~~S 533 (596)
T COG0465 507 SAKLGPVAYEQVEGVFLGRYQ-----------------------------------------------------KAKNYS 533 (596)
T ss_pred chhhCceehhhcccccccccc-----------------------------------------------------cccCcc
Confidence 566666655332112222211 111111
Q ss_pred cChHhhhcchHHhhhcccCC--cchHHhhHHHHHHHHHHhHhHhcCCHHHHHHHhcCCCCC
Q psy10020 543 YNKEETLDPKKEMTVNREQP--PSHDKKKRKCLTEISVTTMVLSSLNRREKEDRIGESQPF 601 (640)
Q Consensus 543 ~t~~~~~~~i~~~~~~r~~~--~~~~~~~r~~l~~l~~~ll~~ETL~~~ei~~i~~~~~~~ 601 (640)
.--.+..|.-...+....++ ..+..+|++.++.+++.|+++|||+++|++.|+.+.+.+
T Consensus 534 e~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~~~ 594 (596)
T COG0465 534 EETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRKLP 594 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhcccCC
Confidence 11222233322233333233 667788999999999999999999999999999986553
No 3
>KOG0731|consensus
Probab=100.00 E-value=1.1e-57 Score=509.67 Aligned_cols=413 Identities=31% Similarity=0.402 Sum_probs=349.1
Q ss_pred CcccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hc
Q psy10020 1 MEFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FL 76 (640)
Q Consensus 1 ~eiv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~ 76 (640)
||++.|+++|+.|+++|..+|+|+||+||||||||.|||++|++.+.||+.++++++...+.+....+++.+|. .+
T Consensus 324 ~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~a 403 (774)
T KOG0731|consen 324 MEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNA 403 (774)
T ss_pred HHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccC
Confidence 58999999999999999999999999999999999999999999999999999999999999988999999998 89
Q ss_pred ccccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHH
Q psy10020 77 HCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQE 156 (640)
Q Consensus 77 p~il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (640)
||++|+||+|+++..|.+ .+.+++++++ +
T Consensus 404 P~iifideida~~~~r~G-----------------~~~~~~~~e~----------------------------------e 432 (774)
T KOG0731|consen 404 PSIIFIDEIDAVGRKRGG-----------------KGTGGGQDER----------------------------------E 432 (774)
T ss_pred CeEEEecccccccccccc-----------------cccCCCChHH----------------------------------H
Confidence 999999999999988851 1123578888 5
Q ss_pred HHhhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc--
Q psy10020 157 QCLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN-- 228 (640)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~-- 228 (640)
+++| +||.+|||+.. +.+||| +++||+++.||+||+| +|++++|+
T Consensus 433 ~tln----------------------Qll~emDgf~~----~~~vi~-~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~ 485 (774)
T KOG0731|consen 433 QTLN----------------------QLLVEMDGFET----SKGVIV-LAATNRPDILDPALLRPGRFDRQIQIDLPDVK 485 (774)
T ss_pred HHHH----------------------HHHHHhcCCcC----CCcEEE-EeccCCccccCHHhcCCCccccceeccCCchh
Confidence 6667 88888888888 789999 9999999999999999 99999999
Q ss_pred --HHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhc
Q psy10020 229 --REIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLN 306 (640)
Q Consensus 229 --~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~ 306 (640)
.+|++.|+ +++.. . .+++||..+|.+|+||+|+||.++|+ ++++.++|+
T Consensus 486 ~r~~i~~~h~-~~~~~--------------------~-~e~~dl~~~a~~t~gf~gadl~n~~n-------eaa~~a~r~ 536 (774)
T KOG0731|consen 486 GRASILKVHL-RKKKL--------------------D-DEDVDLSKLASLTPGFSGADLANLCN-------EAALLAARK 536 (774)
T ss_pred hhHHHHHHHh-hccCC--------------------C-cchhhHHHHHhcCCCCcHHHHHhhhh-------HHHHHHHHh
Confidence 78888888 44433 1 36889999999999999999999999 999999999
Q ss_pred cCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEe
Q psy10020 307 LEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIV 386 (640)
Q Consensus 307 ~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~ 386 (640)
....| +..|| ++|++|+..|.+.+.+.+. ..++..+||||+|||+++|++.+.|++.+++|.
T Consensus 537 ~~~~i-~~~~~--~~a~~Rvi~G~~~~~~~~~---------------~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIi 598 (774)
T KOG0731|consen 537 GLREI-GTKDL--EYAIERVIAGMEKKSRVLS---------------LEEKKTVAYHEAGHAVVGWLLEHADPLLKVSII 598 (774)
T ss_pred ccCcc-chhhH--HHHHHHHhccccccchhcC---------------HhhhhhhhhhhccchhhhccccccCcceeEEec
Confidence 99998 99999 9999999999999888887 788999999999999999999999999999999
Q ss_pred cCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec-cccchhhhhHHHHHHHHHHHhchhhhcccCCCCcc
Q psy10020 387 PRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS-SLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDA 465 (640)
Q Consensus 387 P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g-~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~ 465 (640)
|+ . ++||++++|.+.++.++++++++|++.|+|||||+++|| ++|+||..+-..++.+||.-. ..+.| ++.
T Consensus 599 PG-q-alG~a~~~P~~~~l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V----~~~Gm--s~k 670 (774)
T KOG0731|consen 599 PG-Q-ALGYAQYLPTDDYLLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMV----ASFGM--SEK 670 (774)
T ss_pred cC-C-ccceEEECCcccccccHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHH----HHcCc--ccc
Confidence 95 4 999999999988999999999999999999999999997 899999887777777775422 12223 333
Q ss_pred cceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccccccCh
Q psy10020 466 LLKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNK 545 (640)
Q Consensus 466 v~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~~~~t~ 545 (640)
+..+.. |-. ...++... ..++...
T Consensus 671 ig~~~~----------------------------------------------------~~~-~~~~~~~~---~p~s~~~ 694 (774)
T KOG0731|consen 671 IGPISF----------------------------------------------------QML-LPGDESFR---KPYSEKT 694 (774)
T ss_pred cCceec----------------------------------------------------cCc-cccccccc---CccchhH
Confidence 333322 000 11233222 2234445
Q ss_pred HhhhcchHHhhhcccCC--cchHHhhHHHHHHHHHHhHhHhcCCHHHHHHHhcCCCCCc
Q psy10020 546 EETLDPKKEMTVNREQP--PSHDKKKRKCLTEISVTTMVLSSLNRREKEDRIGESQPFR 602 (640)
Q Consensus 546 ~~~~~~i~~~~~~r~~~--~~~~~~~r~~l~~l~~~ll~~ETL~~~ei~~i~~~~~~~~ 602 (640)
.++.|.....+....++ ..+..+|+..++.|++.|+++|+|+++|+..+++...+.+
T Consensus 695 ~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~ 753 (774)
T KOG0731|consen 695 AQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGM 753 (774)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcc
Confidence 56666655555555555 6778889999999999999999999999999998755444
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.1e-49 Score=451.41 Aligned_cols=417 Identities=28% Similarity=0.342 Sum_probs=314.5
Q ss_pred cccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcc
Q psy10020 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLH 77 (640)
Q Consensus 2 eiv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p 77 (640)
+++.+++++..|..++..+++|+||+||||||||++++++|+..+.+++.++++++...+.+.....++.+|. .+|
T Consensus 197 eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P 276 (638)
T CHL00176 197 EVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSP 276 (638)
T ss_pred HHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCC
Confidence 3566778888899999999999999999999999999999999999999999998887777776777777776 689
Q ss_pred cccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHH
Q psy10020 78 CRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQ 157 (640)
Q Consensus 78 ~il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (640)
|+|||||+|.++..|+... ++.+.+. ++
T Consensus 277 ~ILfIDEID~l~~~r~~~~------------------~~~~~e~----------------------------------~~ 304 (638)
T CHL00176 277 CIVFIDEIDAVGRQRGAGI------------------GGGNDER----------------------------------EQ 304 (638)
T ss_pred cEEEEecchhhhhcccCCC------------------CCCcHHH----------------------------------HH
Confidence 9999999999997765111 1234444 56
Q ss_pred HhhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHH
Q psy10020 158 CLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREI 231 (640)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i 231 (640)
+++ .||.++|++.. +.+|+| |+|||+++.||+|++| ++.|++|+.+.
T Consensus 305 ~L~----------------------~LL~~~dg~~~----~~~ViV-IaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 305 TLN----------------------QLLTEMDGFKG----NKGVIV-IAATNRVDILDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred HHH----------------------HHHhhhccccC----CCCeeE-EEecCchHhhhhhhhccccCceEEEECCCCHHH
Confidence 677 89999999887 789999 9999999999999997 88999999555
Q ss_pred HHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccc
Q psy10020 232 AETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEV 311 (640)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~i 311 (640)
+..+| +.... ...+..+.++..+|..|+||||+||.++|+ ++++.++|+....+
T Consensus 358 R~~IL-~~~l~------------------~~~~~~d~~l~~lA~~t~G~sgaDL~~lvn-------eAal~a~r~~~~~I 411 (638)
T CHL00176 358 RLDIL-KVHAR------------------NKKLSPDVSLELIARRTPGFSGADLANLLN-------EAAILTARRKKATI 411 (638)
T ss_pred HHHHH-HHHHh------------------hcccchhHHHHHHHhcCCCCCHHHHHHHHH-------HHHHHHHHhCCCCc
Confidence 55444 22221 012245789999999999999999999999 99998898888777
Q ss_pred ccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCC
Q psy10020 312 MLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSL 391 (640)
Q Consensus 312 i~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~ 391 (640)
+.++| +.|++++..|.+++. ..+ +.+++++||||+||||++++++..+++++++|+||| .
T Consensus 412 -t~~dl--~~Ai~rv~~g~~~~~-~~~---------------~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg-~ 471 (638)
T CHL00176 412 -TMKEI--DTAIDRVIAGLEGTP-LED---------------SKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRG-Q 471 (638)
T ss_pred -CHHHH--HHHHHHHHhhhccCc-ccc---------------HHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecC-C
Confidence 99999 999999988877653 233 567899999999999999999999999999999996 4
Q ss_pred ccceEEEcCC-ccccCCHHHHhhhhhhhccccccceEEec--cccchhhhhHHHHHHHHHHHhchhhhcccCCCCcccce
Q psy10020 392 ALGFAQYTPS-EQKLYNKEEIFSPIDTSRSHRVLRKWVLS--SLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLK 468 (640)
Q Consensus 392 ~~g~~~~l~~-~~~~~t~~~l~~~i~~~l~G~aAE~ii~g--~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v~k 468 (640)
++|++++.|. +..+.++.+++++|+++|+|||||+++|| .+++||..+-..|+.+|.+- +..+.|. .+..
T Consensus 472 ~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~m----v~~~Gm~---~~g~ 544 (638)
T CHL00176 472 AKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQM----VTRFGMS---SIGP 544 (638)
T ss_pred CCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHH----HHHhCCC---cCCc
Confidence 8999999996 56789999999999999999999999998 47899866555566555332 1222242 1222
Q ss_pred EEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccccccChHhh
Q psy10020 469 VTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEET 548 (640)
Q Consensus 469 vtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~~~~t~~~~ 548 (640)
+.+. +.... +.+ +.|.+ +- ...++......
T Consensus 545 ~~~~-------------~~~~~------------------------~~~-----~~~~~---~~-----~~~~s~~~~~~ 574 (638)
T CHL00176 545 ISLE-------------SNNST------------------------DPF-----LGRFM---QR-----NSEYSEEIADK 574 (638)
T ss_pred eeec-------------CCCCc------------------------ccc-----ccccc---cc-----ccCcCHHHHHH
Confidence 2221 10000 000 00110 00 00111111111
Q ss_pred hcchHHhhhcccCC--cchHHhhHHHHHHHHHHhHhHhcCCHHHHHHHhcCCCC
Q psy10020 549 LDPKKEMTVNREQP--PSHDKKKRKCLTEISVTTMVLSSLNRREKEDRIGESQP 600 (640)
Q Consensus 549 ~~~i~~~~~~r~~~--~~~~~~~r~~l~~l~~~ll~~ETL~~~ei~~i~~~~~~ 600 (640)
+|.-...+..+..+ ..+..+||..++.||+.|+++|||+++||+.|+++...
T Consensus 575 iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~ 628 (638)
T CHL00176 575 IDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTI 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCC
Confidence 22222222222222 67778899999999999999999999999999987543
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.9e-48 Score=445.79 Aligned_cols=413 Identities=25% Similarity=0.356 Sum_probs=317.2
Q ss_pred ccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
++.++..+..+..++..+++|++|+||||||||++++++++.++.+++.++++++...+.+.....++..|. .+||
T Consensus 167 i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~ 246 (644)
T PRK10733 167 LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPC 246 (644)
T ss_pred HHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCc
Confidence 445566667778888899999999999999999999999999999999999999888888877777777776 6899
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
++||||+|.++..++.. .++++.+. .++
T Consensus 247 IifIDEiD~l~~~r~~~------------------~~g~~~~~----------------------------------~~~ 274 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAG------------------LGGGHDER----------------------------------EQT 274 (644)
T ss_pred EEEehhHhhhhhccCCC------------------CCCCchHH----------------------------------HHH
Confidence 99999999999777521 11234444 567
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccH---
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNR--- 229 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~--- 229 (640)
++ +||.+||++.. +++|+| |+|||+|+.||||++| ++.|++|+.
T Consensus 275 ln----------------------~lL~~mdg~~~----~~~viv-IaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 275 LN----------------------QMLVEMDGFEG----NEGIIV-IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred HH----------------------HHHHhhhcccC----CCCeeE-EEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 77 89999999988 889999 9999999999999997 899999994
Q ss_pred -HHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccC
Q psy10020 230 -EIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLE 308 (640)
Q Consensus 230 -~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~ 308 (640)
+|++.|+ ++ ..+..++|+..+|+.|.||||+||.++|+ ++++.++|...
T Consensus 328 ~~Il~~~~-~~----------------------~~l~~~~d~~~la~~t~G~sgadl~~l~~-------eAa~~a~r~~~ 377 (644)
T PRK10733 328 EQILKVHM-RR----------------------VPLAPDIDAAIIARGTPGFSGADLANLVN-------EAALFAARGNK 377 (644)
T ss_pred HHHHHHHh-hc----------------------CCCCCcCCHHHHHhhCCCCCHHHHHHHHH-------HHHHHHHHcCC
Confidence 4444444 22 22345788999999999999999999999 99998888877
Q ss_pred cccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecC
Q psy10020 309 KEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPR 388 (640)
Q Consensus 309 ~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~ 388 (640)
..+ +..|| ++|++++..+.+.+...++ ..++..+||||+|||+++++++..+++.+++|+||
T Consensus 378 ~~i-~~~d~--~~a~~~v~~g~~~~~~~~~---------------~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~pr 439 (644)
T PRK10733 378 RVV-SMVEF--EKAKDKIMMGAERRSMVMT---------------EAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR 439 (644)
T ss_pred Ccc-cHHHH--HHHHHHHhccccccccccc---------------HHHHHHHHHHHHHHHHHHHHccCCCceeEEEEecc
Confidence 776 99999 9999999998887766666 57889999999999999999999999999999999
Q ss_pred CCCccceEEEcCCc-cccCCHHHHhhhhhhhccccccceEEec--cccchhhhhHHHHHHHHHHHhchhhhcccCCCCcc
Q psy10020 389 TSLALGFAQYTPSE-QKLYNKEEIFSPIDTSRSHRVLRKWVLS--SLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDA 465 (640)
Q Consensus 389 g~~~~g~~~~l~~~-~~~~t~~~l~~~i~~~l~G~aAE~ii~g--~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~ 465 (640)
|. ++||++++|.+ ....++.+++++|+++|+|||||+++|| .+++||..+-..|+.+|.+- +..+.| ++.
T Consensus 440 g~-~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~m----v~~~Gm--s~~ 512 (644)
T PRK10733 440 GR-ALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNM----VTQWGF--SEK 512 (644)
T ss_pred CC-CcceeEECCCcccccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH----HHHhCC--Ccc
Confidence 65 89999999975 4468999999999999999999999998 57899865555666666332 222335 333
Q ss_pred cceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccccccCh
Q psy10020 466 LLKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNK 545 (640)
Q Consensus 466 v~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~~~~t~ 545 (640)
+..+.+ .+.+... -+|.... ....++...
T Consensus 513 lg~~~~-------------~~~~~~~-------------------------------------~lg~~~~-~~~~~s~~~ 541 (644)
T PRK10733 513 LGPLLY-------------AEEEGEV-------------------------------------FLGRSVA-KAKHMSDET 541 (644)
T ss_pred ccchhh-------------ccccccc-------------------------------------ccccccc-cccccCHHH
Confidence 222222 1111100 0111000 001111111
Q ss_pred HhhhcchHHhhhcccCC--cchHHhhHHHHHHHHHHhHhHhcCCHHHHHHHhcCCCC
Q psy10020 546 EETLDPKKEMTVNREQP--PSHDKKKRKCLTEISVTTMVLSSLNRREKEDRIGESQP 600 (640)
Q Consensus 546 ~~~~~~i~~~~~~r~~~--~~~~~~~r~~l~~l~~~ll~~ETL~~~ei~~i~~~~~~ 600 (640)
.+.+++-...+..+.++ ..+...||..++.||++|+++|||+++||++|+++.+.
T Consensus 542 ~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~~ 598 (644)
T PRK10733 542 ARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRDV 598 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCCC
Confidence 22233333333333333 67778899999999999999999999999999987643
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=9.1e-47 Score=422.01 Aligned_cols=323 Identities=34% Similarity=0.467 Sum_probs=271.2
Q ss_pred ccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
++.++.++..|..++..+++|+||+||||||||+++++||+..+.+++.+++.++...+.+.....++.+|. .+||
T Consensus 70 ~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~ 149 (495)
T TIGR01241 70 IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPC 149 (495)
T ss_pred HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCC
Confidence 456677888899999999999999999999999999999999999999999999888888888888888886 6789
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
+|||||+|.++..+... .++.+.+. .++
T Consensus 150 Il~iDEid~l~~~r~~~------------------~~~~~~~~----------------------------------~~~ 177 (495)
T TIGR01241 150 IIFIDEIDAVGRQRGAG------------------LGGGNDER----------------------------------EQT 177 (495)
T ss_pred EEEEechhhhhhccccC------------------cCCccHHH----------------------------------HHH
Confidence 99999999999776511 01123333 456
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHH
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIA 232 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~ 232 (640)
++ +||.+||++.. +.+|+| |+|||+|+.|||+++| .++|++|+.+.+
T Consensus 178 ~~----------------------~lL~~~d~~~~----~~~v~v-I~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 178 LN----------------------QLLVEMDGFGT----NTGVIV-IAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGR 230 (495)
T ss_pred HH----------------------HHHhhhccccC----CCCeEE-EEecCChhhcCHHHhcCCcceEEEEcCCCCHHHH
Confidence 67 89999999987 788999 9999999999999997 899999995555
Q ss_pred HHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccc
Q psy10020 233 ETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVM 312 (640)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii 312 (640)
..++ +.... ......++++..+|..|.||||+||.++|+ ++++.++++....+
T Consensus 231 ~~il-~~~l~------------------~~~~~~~~~l~~la~~t~G~sgadl~~l~~-------eA~~~a~~~~~~~i- 283 (495)
T TIGR01241 231 EEIL-KVHAK------------------NKKLAPDVDLKAVARRTPGFSGADLANLLN-------EAALLAARKNKTEI- 283 (495)
T ss_pred HHHH-HHHHh------------------cCCCCcchhHHHHHHhCCCCCHHHHHHHHH-------HHHHHHHHcCCCCC-
Confidence 5444 22211 112235788999999999999999999999 88888888887777
Q ss_pred cccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCc
Q psy10020 313 LRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLA 392 (640)
Q Consensus 313 ~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~ 392 (640)
+.++| +.|++++..+...+...++ +.+++++||||+|||++++.++..+++++++|.|+|. .
T Consensus 284 ~~~~l--~~a~~~~~~~~~~~~~~~~---------------~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~-~ 345 (495)
T TIGR01241 284 TMNDI--EEAIDRVIAGPEKKSRVIS---------------EKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQ-A 345 (495)
T ss_pred CHHHH--HHHHHHHhccccccccccc---------------HHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCC-c
Confidence 99999 9999999888776665565 7788999999999999999999999999999999965 8
Q ss_pred cceEEEcCCc-cccCCHHHHhhhhhhhccccccceEEeccccchhhhhHHHHHHHHHH
Q psy10020 393 LGFAQYTPSE-QKLYNKEEIFSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFH 449 (640)
Q Consensus 393 ~g~~~~l~~~-~~~~t~~~l~~~i~~~l~G~aAE~ii~g~~ttGA~l~~n~~~~~A~~ 449 (640)
+|++++.|.. ....++.++++.++++|+|+|||+++||.+++|+.-+-..|+.+|++
T Consensus 346 ~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~Dl~~At~lA~~ 403 (495)
T TIGR01241 346 LGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNIARA 403 (495)
T ss_pred cceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 9999988874 66889999999999999999999999999999986555666666643
No 7
>KOG0734|consensus
Probab=100.00 E-value=7.1e-45 Score=384.30 Aligned_cols=288 Identities=14% Similarity=0.103 Sum_probs=240.8
Q ss_pred chhcHHHHHhhCCC--------CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchh
Q psy10020 266 ASFKMMKKQNFLPQ--------TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRV 337 (640)
Q Consensus 266 ~~~~~~~LA~~t~G--------~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~ 337 (640)
+..--..||+-..| .||++|+++|+||||+||+.+|.+|+..+|||||+++| |.+.+.+..+++.+
T Consensus 346 PGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEi------DavG~kR~~~~~~y 419 (752)
T KOG0734|consen 346 PGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEI------DAVGGKRNPSDQHY 419 (752)
T ss_pred CCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEech------hhhcccCCccHHHH
Confidence 33334567777777 79999999999999999999999999999999999999 66777788888889
Q ss_pred hhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhh
Q psy10020 338 LRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDT 417 (640)
Q Consensus 338 ~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~ 417 (640)
.|||+||||+|||||.+++++|| |+|+ |.++.||++++||| +|+..+++.+|+ +..|.+++..+..
T Consensus 420 ~kqTlNQLLvEmDGF~qNeGiIv--------igAT--Nfpe~LD~AL~RPG-RFD~~v~Vp~PD---v~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 420 AKQTLNQLLVEMDGFKQNEGIIV--------IGAT--NFPEALDKALTRPG-RFDRHVTVPLPD---VRGRTEILKLYLS 485 (752)
T ss_pred HHHHHHHHHHHhcCcCcCCceEE--------Eecc--CChhhhhHHhcCCC-ccceeEecCCCC---cccHHHHHHHHHh
Confidence 99999999999999999999988 7777 55788999999996 777666666554 5566776665433
Q ss_pred -hccccccceEEecc---ccchhhhhHHHHHHHHHHHhchhhhcccCCCCccc-ceEEEeecCccccCccccCcchhhcc
Q psy10020 418 -SRSHRVLRKWVLSS---LLTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL-LKVTIVPRTSLALGFAQYTPSEQKLY 492 (640)
Q Consensus 418 -~l~G~aAE~ii~g~---~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v-~kvtI~prg~~a~G~t~~~p~e~~~~ 492 (640)
...+.-.+--++.+ .++||++ .|++|++|+.++-.....+.|.+.|++ ++|.|+|.+. +++..++.
T Consensus 486 ki~~~~~VD~~iiARGT~GFsGAdL-aNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERk-----s~~i~~ea--- 556 (752)
T KOG0734|consen 486 KIPLDEDVDPKIIARGTPGFSGADL-ANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERK-----SMVIDEEA--- 556 (752)
T ss_pred cCCcccCCCHhHhccCCCCCchHHH-HHHHHHHHHHHHhcCcccccHHHHhhhhhheeeccccc-----ccccChhh---
Confidence 33332333334444 4566788 799999999999999999999999999 7777877554 23444442
Q ss_pred chhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccc-cccChHhhhcchHHhhhcccCC---------
Q psy10020 493 NKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQ-KLYNKEETLDPKKEMTVNREQP--------- 562 (640)
Q Consensus 493 ~~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~-~~~t~~~~~~~i~~~~~~r~~~--------- 562 (640)
++.+||||.|||+++.+.+++.|+|||||+|||+ +||+|.++|+.| ++.|+.|++++++|+||||++|
T Consensus 557 -k~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~-sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~i 634 (752)
T KOG0734|consen 557 -KKITAYHEGGHAIVALYTKGAMPLHKATIMPRGP-SLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKI 634 (752)
T ss_pred -hhhhhhhccCceEEEeecCCCccccceeeccCCc-cccceeecCccchhhHHHHHHHHHHHHhhcchHHHHHhccCCcc
Confidence 7889999999999999999999999999999996 999999999877 6999999999999999999888
Q ss_pred -----cchHHhhHHHHHHHHHHhHhHh
Q psy10020 563 -----PSHDKKKRKCLTEISVTTMVLS 584 (640)
Q Consensus 563 -----~~~~~~~r~~l~~l~~~ll~~E 584 (640)
.+++.++..+..||++++|..+
T Consensus 635 TsGAssDl~qAT~lA~~MVt~fGMSd~ 661 (752)
T KOG0734|consen 635 TSGASSDLDQATKLARRMVTKFGMSDK 661 (752)
T ss_pred cccccchHHHHHHHHHHHHHHcCcccc
Confidence 7888899999999999999744
No 8
>KOG0733|consensus
Probab=100.00 E-value=3.7e-41 Score=361.23 Aligned_cols=192 Identities=29% Similarity=0.470 Sum_probs=165.7
Q ss_pred cccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcc
Q psy10020 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLH 77 (640)
Q Consensus 2 eiv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p 77 (640)
+++.++++|+.|..+|+.+|+|+||+||||||||+|+++||++++.|++.+++..+.+...|+.+++++.+|. .+|
T Consensus 204 ~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aP 283 (802)
T KOG0733|consen 204 ELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAP 283 (802)
T ss_pred HHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCC
Confidence 4556688999999999999999999999999999999999999999999999999999999999999999998 889
Q ss_pred cccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHH
Q psy10020 78 CRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQ 157 (640)
Q Consensus 78 ~il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (640)
|++||||+|++.++|...+ .+ || ++
T Consensus 284 civFiDeIDAI~pkRe~aq----------------------re-----------------------ME----------rR 308 (802)
T KOG0733|consen 284 CIVFIDEIDAITPKREEAQ----------------------RE-----------------------ME----------RR 308 (802)
T ss_pred eEEEeecccccccchhhHH----------------------HH-----------------------HH----------HH
Confidence 9999999999999997211 11 22 78
Q ss_pred HhhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHH
Q psy10020 158 CLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREI 231 (640)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i 231 (640)
+++ +||+.||++..+.....+|+| |||||||+.|||||+| .|++..|+...
T Consensus 309 iVa----------------------QLlt~mD~l~~~~~~g~~VlV-IgATnRPDslDpaLRRaGRFdrEI~l~vP~e~a 365 (802)
T KOG0733|consen 309 IVA----------------------QLLTSMDELSNEKTKGDPVLV-IGATNRPDSLDPALRRAGRFDREICLGVPSETA 365 (802)
T ss_pred HHH----------------------HHHHhhhcccccccCCCCeEE-EecCCCCcccCHHHhccccccceeeecCCchHH
Confidence 888 999999999885444678999 9999999999999999 99999999655
Q ss_pred HHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhh
Q psy10020 232 AETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSH 290 (640)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~ 290 (640)
+..+| +.++. .+.++.+||+..||.+|+||.|||+..+|.
T Consensus 366 R~~IL-~~~~~------------------~lrl~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 366 REEIL-RIICR------------------GLRLSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred HHHHH-HHHHh------------------hCCCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 66655 55543 344566888999999999999999888876
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-39 Score=328.40 Aligned_cols=217 Identities=25% Similarity=0.257 Sum_probs=195.9
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
.++++|++|..+|+.+|+|+|||||||||||.|+|++|+..+..|+.+.++.+..+|.|+....++.+|. ++||||
T Consensus 169 LPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsII 248 (406)
T COG1222 169 LPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSII 248 (406)
T ss_pred ccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEE
Confidence 4688999999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
||||+|+++.+|..++. ++..+. ++++-
T Consensus 249 FiDEIDAIg~kR~d~~t------------------~gDrEV----------------------------------QRTml 276 (406)
T COG1222 249 FIDEIDAIGAKRFDSGT------------------SGDREV----------------------------------QRTML 276 (406)
T ss_pred EEechhhhhcccccCCC------------------CchHHH----------------------------------HHHHH
Confidence 99999999998873322 123333 66766
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----HH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN----RE 230 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~----~~ 230 (640)
+||++||||.. +..|=| |+||||++.|||||+| +|+||+|| .+
T Consensus 277 ----------------------eLL~qlDGFD~----~~nvKV-I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~ 329 (406)
T COG1222 277 ----------------------ELLNQLDGFDP----RGNVKV-IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAE 329 (406)
T ss_pred ----------------------HHHHhccCCCC----CCCeEE-EEecCCccccChhhcCCCcccceeecCCCCHHHHHH
Confidence 89999999999 999999 9999999999999999 99999999 78
Q ss_pred HHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcc
Q psy10020 231 IAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKE 310 (640)
Q Consensus 231 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ 310 (640)
||+.|. +++.. ..++||+.||..|+|+|||||..+|. +|.+.+.|+.+..
T Consensus 330 Il~IHt-rkM~l----------------------~~dvd~e~la~~~~g~sGAdlkaict-------EAGm~AiR~~R~~ 379 (406)
T COG1222 330 ILKIHT-RKMNL----------------------ADDVDLELLARLTEGFSGADLKAICT-------EAGMFAIRERRDE 379 (406)
T ss_pred HHHHHh-hhccC----------------------ccCcCHHHHHHhcCCCchHHHHHHHH-------HHhHHHHHhccCe
Confidence 888888 55543 67899999999999999999999999 9999999999888
Q ss_pred cccccccchhhhhhccCCCCCCc
Q psy10020 311 VMLRKKLEEEYSIELGSPIDTSR 333 (640)
Q Consensus 311 ii~~~di~~~~ai~~~~~g~~~~ 333 (640)
+ +++|| .+|++++.....+.
T Consensus 380 V-t~~DF--~~Av~KV~~~~~~~ 399 (406)
T COG1222 380 V-TMEDF--LKAVEKVVKKKKKL 399 (406)
T ss_pred e-cHHHH--HHHHHHHHhccccc
Confidence 8 99999 99999988765544
No 10
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.4e-37 Score=368.33 Aligned_cols=292 Identities=12% Similarity=0.114 Sum_probs=229.5
Q ss_pred cccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhh----------------------------
Q psy10020 10 PEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI---------------------------- 61 (640)
Q Consensus 10 ~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~---------------------------- 61 (640)
+.....+|+.+|+|+||+||||||||.|||++|+..+.|++.+++.++...+
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 4566778999999999999999999999999999999999999999887433
Q ss_pred -------------c--cchhhhHhhhhh----hcccccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHH
Q psy10020 62 -------------G--GLGAARVRTEVV----FLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKE 122 (640)
Q Consensus 62 -------------~--~~~~~~l~~~f~----~~p~il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (640)
. +....+++.+|. .+||||||||+|+++.... +
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds---~------------------------- 1750 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES---N------------------------- 1750 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc---c-------------------------
Confidence 0 111223666776 7899999999999985421 0
Q ss_pred HHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhcccccee
Q psy10020 123 VMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHI 202 (640)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~vi 202 (640)
..+++ +||++||+... ..+..+|+
T Consensus 1751 ---------------------------------~ltL~----------------------qLLneLDg~~~-~~s~~~VI 1774 (2281)
T CHL00206 1751 ---------------------------------YLSLG----------------------LLVNSLSRDCE-RCSTRNIL 1774 (2281)
T ss_pred ---------------------------------eehHH----------------------HHHHHhccccc-cCCCCCEE
Confidence 22345 78888887642 12267899
Q ss_pred EEEeeccCCCcccHHHHh------HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccccCCCCc-chhcHHHHHh
Q psy10020 203 VKMETQLRAYESDKKLAR------KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIP-ASFKMMKKQN 275 (640)
Q Consensus 203 v~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LA~ 275 (640)
| |||||+|+.|||||+| .|+|++|+..-++.++ ..+.. ...+.+. ..+|++.+|+
T Consensus 1775 V-IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL-~ILl~----------------tkg~~L~~~~vdl~~LA~ 1836 (2281)
T CHL00206 1775 V-IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHF-FTLSY----------------TRGFHLEKKMFHTNGFGS 1836 (2281)
T ss_pred E-EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHH-HHHHh----------------hcCCCCCcccccHHHHHH
Confidence 9 9999999999999998 8999999943333333 21111 0011112 2368999999
Q ss_pred hCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhccccccccc
Q psy10020 276 FLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASL 355 (640)
Q Consensus 276 ~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~ 355 (640)
.|+|||||||.++|+ +|++.++++++..| +.++| +.|++|+..|.+.+. .+ ..
T Consensus 1837 ~T~GfSGADLanLvN-------EAaliAirq~ks~I-d~~~I--~~Al~Rq~~g~~~~~--~~---------------~~ 1889 (2281)
T CHL00206 1837 ITMGSNARDLVALTN-------EALSISITQKKSII-DTNTI--RSALHRQTWDLRSQV--RS---------------VQ 1889 (2281)
T ss_pred hCCCCCHHHHHHHHH-------HHHHHHHHcCCCcc-CHHHH--HHHHHHHHhhhhhcc--cC---------------cc
Confidence 999999999999999 99999999988777 99999 999999998876432 22 11
Q ss_pred ccchhccccccchhhhcccCCCCcceEEEEe--c---CCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec
Q psy10020 356 VCRQVAFHESGHALVGWLLPHTDALLKVTIV--P---RTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS 430 (640)
Q Consensus 356 ~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~--P---~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g 430 (640)
+ ..+++||+||||++..+.+.+++++++|. | ++++..|+++++|.+ ...++..++..|.+++||+|||++++.
T Consensus 1890 ~-~~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~yl~~wyle~~-~~mkk~tiL~~Il~cLAGraAedlwf~ 1967 (2281)
T CHL00206 1890 D-HGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELG-TSMKKLTILLYLLSCSAGSVAQDLWSL 1967 (2281)
T ss_pred h-hhhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcccceeEeecCCc-ccCCHHHHHHHHHHHhhhhhhhhhccC
Confidence 2 23699999999999999999999999984 3 235677999999876 789999999999999999999999996
Q ss_pred cc
Q psy10020 431 SL 432 (640)
Q Consensus 431 ~~ 432 (640)
..
T Consensus 1968 ~~ 1969 (2281)
T CHL00206 1968 PG 1969 (2281)
T ss_pred cc
Confidence 43
No 11
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-37 Score=338.63 Aligned_cols=269 Identities=19% Similarity=0.217 Sum_probs=224.2
Q ss_pred CCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccC-----CCCCCccchhhhHhhhhhhccccccc
Q psy10020 279 QTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGS-----PIDTSRSHRVLRKWVLSSLLTVNKFA 353 (640)
Q Consensus 279 G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~-----~g~~~~~~~~~~~~~~qlL~~~d~f~ 353 (640)
-.||+||.++|+||||+|||.+|..|++.+||||+++++ ||+.+.. +|+..++ ||+||||+|||||.
T Consensus 213 ~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEi---DAvGr~Rg~g~GggnderE-----QTLNQlLvEmDGF~ 284 (596)
T COG0465 213 SISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEI---DAVGRQRGAGLGGGNDERE-----QTLNQLLVEMDGFG 284 (596)
T ss_pred eccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehh---hhcccccCCCCCCCchHHH-----HHHHHHHhhhccCC
Confidence 389999999999999999999999999999999999999 9998875 4555554 55559999999999
Q ss_pred ccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEecc--
Q psy10020 354 SLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLSS-- 431 (640)
Q Consensus 354 ~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g~-- 431 (640)
.++.+++ ++ ++||+|.+|+|++||+ +|++-..+.+ +.+..|++++..+.. .-..++.+.++.
T Consensus 285 ~~~gviv--------ia--aTNRpdVlD~ALlRpg-RFDRqI~V~~---PDi~gRe~IlkvH~~--~~~l~~~Vdl~~iA 348 (596)
T COG0465 285 GNEGVIV--------IA--ATNRPDVLDPALLRPG-RFDRQILVEL---PDIKGREQILKVHAK--NKPLAEDVDLKKIA 348 (596)
T ss_pred CCCceEE--------Ee--cCCCcccchHhhcCCC-CcceeeecCC---cchhhHHHHHHHHhh--cCCCCCcCCHHHHh
Confidence 8887765 44 5599999999999997 5454444443 446678888885444 335557777652
Q ss_pred ----ccchhhhhHHHHHHHHHHHhchhhhcccCCCCccc-ceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHh
Q psy10020 432 ----LLTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL-LKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHAL 506 (640)
Q Consensus 432 ----~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v-~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal 506 (640)
..+||++ .|+.|.+|+.++++....+.+.+++++ ++|.++|++.+. .+++++ ++.+||||+|||+
T Consensus 349 r~tpGfsGAdL-~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~----vise~e-----k~~~AYhEaghal 418 (596)
T COG0465 349 RGTPGFSGADL-ANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR----VISEAE-----KKITAYHEAGHAL 418 (596)
T ss_pred hhCCCcccchH-hhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc----ccChhh-----hcchHHHHHHHHH
Confidence 3456777 799999999999999999999999877 888888876522 234444 6789999999999
Q ss_pred hhhhCCCCCcceeEeeecCCCCcccceeeccccc-cccChHhhhcchHHhhhcccCC-------------cchHHhhHHH
Q psy10020 507 VGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQ-KLYNKEETLDPKKEMTVNREQP-------------PSHDKKKRKC 572 (640)
Q Consensus 507 ~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~-~~~t~~~~~~~i~~~~~~r~~~-------------~~~~~~~r~~ 572 (640)
++++++.+|++||+||+||| .+|||+.+.|++| +++|+.++++++++++|||++| .+++..+..+
T Consensus 419 v~~~l~~~d~v~KvtIiPrG-~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D~~~at~~a 497 (596)
T COG0465 419 VGLLLPDADPVHKVTIIPRG-RALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLA 497 (596)
T ss_pred HHHhCCCCcccceeeeccCc-hhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcccccccchhhHHHHHHHH
Confidence 99999999999999999999 6999999999885 6999999999999999999887 5667779999
Q ss_pred HHHHHHHhHh
Q psy10020 573 LTEISVTTMV 582 (640)
Q Consensus 573 l~~l~~~ll~ 582 (640)
..||++++|.
T Consensus 498 r~mVt~~Gms 507 (596)
T COG0465 498 RAMVTEYGMS 507 (596)
T ss_pred HHhhhhcCcc
Confidence 9999999996
No 12
>KOG0733|consensus
Probab=100.00 E-value=4e-35 Score=315.00 Aligned_cols=225 Identities=25% Similarity=0.331 Sum_probs=194.8
Q ss_pred cccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcc
Q psy10020 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLH 77 (640)
Q Consensus 2 eiv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p 77 (640)
-|+++.++++.|+.+|+..|.|+||+||||||||.|+|++|++.+..|+.+.|-++.++|+|+.+..++.+|+ .+|
T Consensus 526 aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 526 AILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAP 605 (802)
T ss_pred HHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCC
Confidence 3577889999999999999999999999999999999999999999999999999999999999999999999 889
Q ss_pred cccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHH
Q psy10020 78 CRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQ 157 (640)
Q Consensus 78 ~il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (640)
|+|||||+|++.++|+..+ +... .+
T Consensus 606 CVIFFDEiDaL~p~R~~~~---------------------s~~s----------------------------------~R 630 (802)
T KOG0733|consen 606 CVIFFDEIDALVPRRSDEG---------------------SSVS----------------------------------SR 630 (802)
T ss_pred eEEEecchhhcCcccCCCC---------------------chhH----------------------------------HH
Confidence 9999999999999998221 1122 67
Q ss_pred HhhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc---
Q psy10020 158 CLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN--- 228 (640)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~--- 228 (640)
++| +||.+|||+.. +.+|+| |||||||+.||||++| .++|++|+
T Consensus 631 vvN----------------------qLLtElDGl~~----R~gV~v-iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 631 VVN----------------------QLLTELDGLEE----RRGVYV-IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred HHH----------------------HHHHHhccccc----ccceEE-EeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 889 99999999999 999999 9999999999999999 89999999
Q ss_pred -HHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCC--CCCccchhhhhhcchHHHHHHHHHHHh
Q psy10020 229 -REIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLP--QTSTASNVNQSHNIPQEIYDDILNLKL 305 (640)
Q Consensus 229 -~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~--G~sgadi~~l~~~~~a~~~~a~~~~ar 305 (640)
.+|++.+. ++. ...+++++||+.||..+. ||||||+..+|+ ++++.+.+
T Consensus 684 R~~ILK~~t-kn~--------------------k~pl~~dVdl~eia~~~~c~gftGADLaaLvr-------eAsi~AL~ 735 (802)
T KOG0733|consen 684 RVAILKTIT-KNT--------------------KPPLSSDVDLDEIARNTKCEGFTGADLAALVR-------EASILALR 735 (802)
T ss_pred HHHHHHHHh-ccC--------------------CCCCCcccCHHHHhhcccccCCchhhHHHHHH-------HHHHHHHH
Confidence 55666665 321 234578999999998877 999999999999 77776665
Q ss_pred cc---------------CcccccccccchhhhhhccCCCCCCccchhh
Q psy10020 306 NL---------------EKEVMLRKKLEEEYSIELGSPIDTSRSHRVL 338 (640)
Q Consensus 306 ~~---------------~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~ 338 (640)
+. ...+++..+| ++|+.++.+...++++...
T Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~t~~hF--~eA~~~i~pSv~~~dr~~Y 781 (802)
T KOG0733|consen 736 ESLFEIDSSEDDVTVRSSTIIVTYKHF--EEAFQRIRPSVSERDRKKY 781 (802)
T ss_pred HHHhhccccCcccceeeeeeeecHHHH--HHHHHhcCCCccHHHHHHH
Confidence 42 1234577788 9999999999988876554
No 13
>KOG0730|consensus
Probab=100.00 E-value=1.1e-34 Score=316.32 Aligned_cols=216 Identities=27% Similarity=0.329 Sum_probs=189.2
Q ss_pred ccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
+.+.+++++.|..+|+++|+|+|||||||||||+++|++|.+.+.+|+.+.+.+++++|.|+.++.++.+|. .+||
T Consensus 450 V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~ 529 (693)
T KOG0730|consen 450 VEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPC 529 (693)
T ss_pred HhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCe
Confidence 456688999999999999999999999999999999999999999999999999999999999999999998 7899
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
|+|+||+|++...|++. ++... .++
T Consensus 530 IiFfDEiDsi~~~R~g~---------------------~~~v~----------------------------------~RV 554 (693)
T KOG0730|consen 530 IIFFDEIDALAGSRGGS---------------------SSGVT----------------------------------DRV 554 (693)
T ss_pred EEehhhHHhHhhccCCC---------------------ccchH----------------------------------HHH
Confidence 99999999999988711 11112 678
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN---- 228 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~---- 228 (640)
++ +||++|||+.. ..+|+| |||||||+.||+|++| .|+|++||
T Consensus 555 ls----------------------qLLtEmDG~e~----~k~V~V-iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 555 LS----------------------QLLTEMDGLEA----LKNVLV-IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred HH----------------------HHHHHcccccc----cCcEEE-EeccCChhhcCHHHcCCcccceeEeecCccHHHH
Confidence 88 99999999999 889999 9999999999999999 99999999
Q ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhcc-
Q psy10020 229 REIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNL- 307 (640)
Q Consensus 229 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~- 307 (640)
.+|++.++ ++++ +++++|++.||+.|+|||||||.++|+ +++..+.++.
T Consensus 608 ~~Ilk~~~-kkmp----------------------~~~~vdl~~La~~T~g~SGAel~~lCq-------~A~~~a~~e~i 657 (693)
T KOG0730|consen 608 LEILKQCA-KKMP----------------------FSEDVDLEELAQATEGYSGAEIVAVCQ-------EAALLALRESI 657 (693)
T ss_pred HHHHHHHH-hcCC----------------------CCccccHHHHHHHhccCChHHHHHHHH-------HHHHHHHHHhc
Confidence 66777766 4443 467899999999999999999999999 8888888775
Q ss_pred CcccccccccchhhhhhccCCCCCC
Q psy10020 308 EKEVMLRKKLEEEYSIELGSPIDTS 332 (640)
Q Consensus 308 ~~~ii~~~di~~~~ai~~~~~g~~~ 332 (640)
....|+.+|| ++|+..+......
T Consensus 658 ~a~~i~~~hf--~~al~~~r~s~~~ 680 (693)
T KOG0730|consen 658 EATEITWQHF--EEALKAVRPSLTS 680 (693)
T ss_pred ccccccHHHH--HHHHHhhcccCCH
Confidence 3344599999 8888877666554
No 14
>KOG0738|consensus
Probab=99.98 E-value=2.9e-32 Score=280.51 Aligned_cols=223 Identities=21% Similarity=0.277 Sum_probs=184.5
Q ss_pred cccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccc
Q psy10020 4 VDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCR 79 (640)
Q Consensus 4 v~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~i 79 (640)
+.++.-|+.|+.+ ..+.+|+|++||||||||+|+|++|.+++..|+.++.+.+.++|-|+.++.++.+|. ++|+.
T Consensus 229 vlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPSt 307 (491)
T KOG0738|consen 229 VLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPST 307 (491)
T ss_pred hhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCce
Confidence 3445557777775 578999999999999999999999999999999999999999999999999999998 89999
Q ss_pred cccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHh
Q psy10020 80 VFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCL 159 (640)
Q Consensus 80 l~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (640)
|||||||+++.+|+ +.+++|.+ +++-
T Consensus 308 IFiDEIDslcs~RG-----------------------~s~EHEaS-------------------------------RRvK 333 (491)
T KOG0738|consen 308 IFIDEIDSLCSQRG-----------------------GSSEHEAS-------------------------------RRVK 333 (491)
T ss_pred eehhhHHHHHhcCC-----------------------CccchhHH-------------------------------HHHH
Confidence 99999999999987 44555433 5566
Q ss_pred hhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHH
Q psy10020 160 RKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETI 235 (640)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~ 235 (640)
+ +||.+|||+.....+.+-|+| ++|||.||.||.||+| +|+|+|||.+-++.+
T Consensus 334 s----------------------ELLvQmDG~~~t~e~~k~VmV-LAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~L 390 (491)
T KOG0738|consen 334 S----------------------ELLVQMDGVQGTLENSKVVMV-LAATNFPWDIDEALRRRLEKRIYIPLPDAEARSAL 390 (491)
T ss_pred H----------------------HHHHHhhccccccccceeEEE-EeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHH
Confidence 6 999999999986555566899 9999999999999999 999999997777777
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCc------
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEK------ 309 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~------ 309 (640)
+...+. ...++++++++.||+.++||||+||.++|+ ++++...|+...
T Consensus 391 i~~~l~-------------------~~~~~~~~~~~~lae~~eGySGaDI~nvCr-------eAsm~~mRR~i~g~~~~e 444 (491)
T KOG0738|consen 391 IKILLR-------------------SVELDDPVNLEDLAERSEGYSGADITNVCR-------EASMMAMRRKIAGLTPRE 444 (491)
T ss_pred HHHhhc-------------------cccCCCCccHHHHHHHhcCCChHHHHHHHH-------HHHHHHHHHHHhcCCcHH
Confidence 622232 344578999999999999999999999999 888777664211
Q ss_pred ----------ccccccccchhhhhhccCCCCCC
Q psy10020 310 ----------EVMLRKKLEEEYSIELGSPIDTS 332 (640)
Q Consensus 310 ----------~ii~~~di~~~~ai~~~~~g~~~ 332 (640)
..++..|| +.|+.++.+....
T Consensus 445 i~~lakE~~~~pv~~~Df--e~Al~~v~pSvs~ 475 (491)
T KOG0738|consen 445 IRQLAKEEPKMPVTNEDF--EEALRKVRPSVSA 475 (491)
T ss_pred hhhhhhhccccccchhhH--HHHHHHcCcCCCH
Confidence 12367777 8888877766553
No 15
>KOG0730|consensus
Probab=99.97 E-value=9.4e-32 Score=293.32 Aligned_cols=318 Identities=19% Similarity=0.208 Sum_probs=244.0
Q ss_pred ccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hc-ccccc
Q psy10020 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FL-HCRVF 81 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~-p~il~ 81 (640)
+.++..+..+|+.+|+|+|++||||+|||.+++++|.+.+..++.+++..+..++.|+.+..++..|+ ++ |+++|
T Consensus 204 l~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~ 283 (693)
T KOG0730|consen 204 LRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIF 283 (693)
T ss_pred hcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEe
Confidence 67889999999999999999999999999999999999999999999999999999999999999998 66 99999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
+||+|+++++|... +. .+ .+++.
T Consensus 284 IdEld~l~p~r~~~----------------------~~-~e---------------------------------~Rv~s- 306 (693)
T KOG0730|consen 284 IDELDALCPKREGA----------------------DD-VE---------------------------------SRVVS- 306 (693)
T ss_pred HHhHhhhCCccccc----------------------ch-HH---------------------------------HHHHH-
Confidence 99999999988722 11 11 46667
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHH--h---HhccCccc----HHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLA--R---KQLIDSVN----REIA 232 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~--r---~i~i~~P~----~~i~ 232 (640)
+|+..+|++.. ...++| |+|||+|+.||++++ | .++|..|+ .+|+
T Consensus 307 ---------------------qlltL~dg~~~----~~~viv-l~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl 360 (693)
T KOG0730|consen 307 ---------------------QLLTLLDGLKP----DAKVIV-LAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDIL 360 (693)
T ss_pred ---------------------HHHHHHhhCcC----cCcEEE-EEecCCccccChhhhcCCCcceeeecCCCchhHHHHH
Confidence 88899999887 889999 999999999999999 4 89999999 6677
Q ss_pred HHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHH-------------
Q psy10020 233 ETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDD------------- 299 (640)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a------------- 299 (640)
+.+. +++.. .++.++..+|..|.||+|+|+..+|....-...+.
T Consensus 361 ~~l~-k~~~~----------------------~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~ 417 (693)
T KOG0730|consen 361 RVLT-KKMNL----------------------LSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMGIR 417 (693)
T ss_pred HHHH-HhcCC----------------------cchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 6666 44443 34678888888888888888888877333322222
Q ss_pred --------------------------------------------------------------------------------
Q psy10020 300 -------------------------------------------------------------------------------- 299 (640)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (640)
T Consensus 418 psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 418 PSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred chhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence
Q ss_pred ---------------------HHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccc
Q psy10020 300 ---------------------ILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCR 358 (640)
Q Consensus 300 ---------------------~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~ 358 (640)
.|..||..+++|+|.++| |++..-.+|... ...+-.|+|||+||||+.....+
T Consensus 498 svkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEi---Dsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 498 SVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEI---DALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred eccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhH---HhHhhccCCCcc---chHHHHHHHHHHHcccccccCcE
Confidence 133456667788888888 776655544333 33444567999999999877555
Q ss_pred hhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec------cc
Q psy10020 359 QVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS------SL 432 (640)
Q Consensus 359 ~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g------~~ 432 (640)
++..++||+|.+|+++++|| +++.-..+.+|+ ..+|..++......+ ...+.+.+. +.
T Consensus 572 ----------~ViAATNRpd~ID~ALlRPG-RlD~iiyVplPD---~~aR~~Ilk~~~kkm--p~~~~vdl~~La~~T~g 635 (693)
T KOG0730|consen 572 ----------LVIAATNRPDMIDPALLRPG-RLDRIIYVPLPD---LEARLEILKQCAKKM--PFSEDVDLEELAQATEG 635 (693)
T ss_pred ----------EEEeccCChhhcCHHHcCCc-ccceeEeecCcc---HHHHHHHHHHHHhcC--CCCccccHHHHHHHhcc
Confidence 44556699999999999997 555544455554 457788887766655 455665553 45
Q ss_pred cchhhhhH--HHHHHHHHHHhc
Q psy10020 433 LTVNKFAS--LVCRQVAFHESG 452 (640)
Q Consensus 433 ttGA~l~~--n~~~~~A~~e~g 452 (640)
.+||++.. ++|...|++|.-
T Consensus 636 ~SGAel~~lCq~A~~~a~~e~i 657 (693)
T KOG0730|consen 636 YSGAEIVAVCQEAALLALRESI 657 (693)
T ss_pred CChHHHHHHHHHHHHHHHHHhc
Confidence 78899844 455555555554
No 16
>KOG0731|consensus
Probab=99.97 E-value=2e-32 Score=307.03 Aligned_cols=283 Identities=19% Similarity=0.222 Sum_probs=225.3
Q ss_pred HHHHhhCCC--------CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCC-CCCccchhhhHh
Q psy10020 271 MKKQNFLPQ--------TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPI-DTSRSHRVLRKW 341 (640)
Q Consensus 271 ~~LA~~t~G--------~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g-~~~~~~~~~~~~ 341 (640)
..||.-+.| +||+||.++++|+||+|++++|..||.++|+||++++| +|+.+..+| .....+.-..+|
T Consensus 358 TLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifidei---da~~~~r~G~~~~~~~~e~e~t 434 (774)
T KOG0731|consen 358 TLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEI---DAVGRKRGGKGTGGGQDEREQT 434 (774)
T ss_pred HHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccc---ccccccccccccCCCChHHHHH
Confidence 356666666 89999999999999999999999999999999999999 888877632 222233334567
Q ss_pred hhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccc
Q psy10020 342 VLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSH 421 (640)
Q Consensus 342 ~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G 421 (640)
+||||+|||||.....+ |+..++|++|.+|++++||| ++++++...+|+ +..|..+++.+....--
T Consensus 435 lnQll~emDgf~~~~~v----------i~~a~tnr~d~ld~allrpG-Rfdr~i~i~~p~---~~~r~~i~~~h~~~~~~ 500 (774)
T KOG0731|consen 435 LNQLLVEMDGFETSKGV----------IVLAATNRPDILDPALLRPG-RFDRQIQIDLPD---VKGRASILKVHLRKKKL 500 (774)
T ss_pred HHHHHHHhcCCcCCCcE----------EEEeccCCccccCHHhcCCC-ccccceeccCCc---hhhhHHHHHHHhhccCC
Confidence 77999999999877555 44555699999999999996 888888887776 34566666665543321
Q ss_pred cccceEEec------cccchhhhhHHHHHHHHHHHhchhhhcccCCCCcccceEEEeecCccccCccccCcchhhccchh
Q psy10020 422 RVLRKWVLS------SLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKE 495 (640)
Q Consensus 422 ~aAE~ii~g------~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v~kvtI~prg~~a~G~t~~~p~e~~~~~~~ 495 (640)
. -|.+.++ ...+||++ .|++|++|++++++....+...|++.+.++.+.. -...++.+..++ ++
T Consensus 501 ~-~e~~dl~~~a~~t~gf~gadl-~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G----~~~~~~~~~~~~----~~ 570 (774)
T KOG0731|consen 501 D-DEDVDLSKLASLTPGFSGADL-ANLCNEAALLAARKGLREIGTKDLEYAIERVIAG----MEKKSRVLSLEE----KK 570 (774)
T ss_pred C-cchhhHHHHHhcCCCCcHHHH-HhhhhHHHHHHHHhccCccchhhHHHHHHHHhcc----ccccchhcCHhh----hh
Confidence 1 2444443 24577888 7899999999999999999999999887766621 111223333332 67
Q ss_pred HHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccccccChHhhhcchHHhhhcccCC-------------
Q psy10020 496 EVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEETLDPKKEMTVNREQP------------- 562 (640)
Q Consensus 496 ~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~~~~t~~~~~~~i~~~~~~r~~~------------- 562 (640)
.++|||+|||++||++++.|++.|+||+| |. ++||++|.|.++++++++|+++++.+++|||++|
T Consensus 571 ~~a~~eagha~~g~~l~~~dpl~kvsIiP-Gq-alG~a~~~P~~~~l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ 648 (774)
T KOG0731|consen 571 TVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQ-ALGYAQYLPTDDYLLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQ 648 (774)
T ss_pred hhhhhhccchhhhccccccCcceeEEecc-CC-ccceEEECCcccccccHHHHHHHHHHHhCcchhhheecCCccCchhh
Confidence 89999999999999999999999999999 76 9999999999999999999999999999999888
Q ss_pred cchHHhhHHHHHHHHHHhHh
Q psy10020 563 PSHDKKKRKCLTEISVTTMV 582 (640)
Q Consensus 563 ~~~~~~~r~~l~~l~~~ll~ 582 (640)
.++.+.++.+..+|++++|.
T Consensus 649 ddl~kvT~~A~~~V~~~Gms 668 (774)
T KOG0731|consen 649 DDLEKVTKIARAMVASFGMS 668 (774)
T ss_pred ccHHHHHHHHHHHHHHcCcc
Confidence 56777799999999999996
No 17
>KOG0728|consensus
Probab=99.97 E-value=2.4e-30 Score=252.49 Aligned_cols=217 Identities=24% Similarity=0.313 Sum_probs=191.5
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
+.++|++|+.+|+..|+|+||+||||+|||.|++++|....+.|+.++++.+...|.|+....++.+|. ++|+|||
T Consensus 166 PvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiif 245 (404)
T KOG0728|consen 166 PVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIF 245 (404)
T ss_pred cccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
+||+|+++..|...+ +|++++. ++++-
T Consensus 246 mdeidsigs~r~e~~------------------~ggdsev----------------------------------qrtml- 272 (404)
T KOG0728|consen 246 MDEIDSIGSSRVESG------------------SGGDSEV----------------------------------QRTML- 272 (404)
T ss_pred eecccccccccccCC------------------CCccHHH----------------------------------HHHHH-
Confidence 999999998886211 1345554 56666
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----HHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN----REI 231 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~----~~i 231 (640)
+||++|||+.. ..++-| |+|||+.+.|||||+| +|+||.|+ .+|
T Consensus 273 ---------------------ellnqldgfea----tknikv-imatnridild~allrpgridrkiefp~p~e~ar~~i 326 (404)
T KOG0728|consen 273 ---------------------ELLNQLDGFEA----TKNIKV-IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDI 326 (404)
T ss_pred ---------------------HHHHhcccccc----ccceEE-EEeccccccccHhhcCCCcccccccCCCCCHHHHHHH
Confidence 89999999999 899999 9999999999999999 99999999 667
Q ss_pred HHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccc
Q psy10020 232 AETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEV 311 (640)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~i 311 (640)
++.|. +++.. ...+|+..+|+...|.||+++..+|. ++.+.+.|+.+-.+
T Consensus 327 lkihs-rkmnl----------------------~rgi~l~kiaekm~gasgaevk~vct-------eagm~alrerrvhv 376 (404)
T KOG0728|consen 327 LKIHS-RKMNL----------------------TRGINLRKIAEKMPGASGAEVKGVCT-------EAGMYALRERRVHV 376 (404)
T ss_pred HHHhh-hhhch----------------------hcccCHHHHHHhCCCCccchhhhhhh-------hhhHHHHHHhhccc
Confidence 77776 55433 44789999999999999999999999 99999999888887
Q ss_pred ccccccchhhhhhccCCCCCCcc
Q psy10020 312 MLRKKLEEEYSIELGSPIDTSRS 334 (640)
Q Consensus 312 i~~~di~~~~ai~~~~~g~~~~~ 334 (640)
+.+|| +-|+.+++.....+.
T Consensus 377 -tqedf--emav~kvm~k~~e~n 396 (404)
T KOG0728|consen 377 -TQEDF--EMAVAKVMQKDSEKN 396 (404)
T ss_pred -cHHHH--HHHHHHHHhcccccc
Confidence 99999 999998877665554
No 18
>KOG0652|consensus
Probab=99.96 E-value=7.8e-30 Score=250.19 Aligned_cols=215 Identities=25% Similarity=0.320 Sum_probs=183.3
Q ss_pred ccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
|+.++.+++-|.++|+.+|+|+|+|||||+|||.++|+.|...+..|+.+.+..+...+.|...+.++..|. .+|+
T Consensus 187 iVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~ 266 (424)
T KOG0652|consen 187 IVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPT 266 (424)
T ss_pred hccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCe
Confidence 456778999999999999999999999999999999999999999999999999999999999999999998 8899
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
||||||+|+++.+|...+. ..++|+ +++
T Consensus 267 IIFIDElDAIGtKRfDSek--------------------~GDREV--------------------------------QRT 294 (424)
T KOG0652|consen 267 IIFIDELDAIGTKRFDSEK--------------------AGDREV--------------------------------QRT 294 (424)
T ss_pred EEEEechhhhccccccccc--------------------cccHHH--------------------------------HHH
Confidence 9999999999988863322 122221 555
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHH
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIA 232 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~ 232 (640)
+- .||++|||+++ +..|-| |+|||+.+.|||||+| +|+||.|+.+-+
T Consensus 295 ML----------------------ELLNQLDGFss----~~~vKv-iAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aR 347 (424)
T KOG0652|consen 295 ML----------------------ELLNQLDGFSS----DDRVKV-IAATNRVDILDPALLRSGRLDRKIEFPHPNEEAR 347 (424)
T ss_pred HH----------------------HHHHhhcCCCC----ccceEE-EeecccccccCHHHhhcccccccccCCCCChHHH
Confidence 55 89999999999 999999 9999999999999999 999999994444
Q ss_pred HHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccc
Q psy10020 233 ETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVM 312 (640)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii 312 (640)
..++ +-- .+.+++.++++|+.||+.|++|.|+++..+|+ ++.+.+.|+.+..+
T Consensus 348 arIl-QIH------------------sRKMnv~~DvNfeELaRsTddFNGAQcKAVcV-------EAGMiALRr~atev- 400 (424)
T KOG0652|consen 348 ARIL-QIH------------------SRKMNVSDDVNFEELARSTDDFNGAQCKAVCV-------EAGMIALRRGATEV- 400 (424)
T ss_pred HHHH-HHh------------------hhhcCCCCCCCHHHHhhcccccCchhheeeeh-------hhhHHHHhcccccc-
Confidence 4433 111 13455678999999999999999999999999 99999999999998
Q ss_pred cccccchhhhhhc
Q psy10020 313 LRKKLEEEYSIEL 325 (640)
Q Consensus 313 ~~~di~~~~ai~~ 325 (640)
+-+|| .+.+-.
T Consensus 401 ~heDf--megI~e 411 (424)
T KOG0652|consen 401 THEDF--MEGILE 411 (424)
T ss_pred cHHHH--HHHHHH
Confidence 88888 565543
No 19
>KOG0727|consensus
Probab=99.96 E-value=5.3e-29 Score=243.36 Aligned_cols=214 Identities=24% Similarity=0.291 Sum_probs=182.7
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++.+.++|+.+|+++|+|+||+||||||||+|+|++|......|+.+.++.+..+|.|+....++.+|. ++|+|+|
T Consensus 174 plt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiif 253 (408)
T KOG0727|consen 174 PLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIF 253 (408)
T ss_pred cchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEE
Confidence 356778999999999999999999999999999999999999999999999999999999999999987 8899999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
|||+|++..+|-.... |.+.+. ++.+-
T Consensus 254 ideidaiatkrfdaqt------------------gadrev----------------------------------qril~- 280 (408)
T KOG0727|consen 254 IDEIDAIATKRFDAQT------------------GADREV----------------------------------QRILI- 280 (408)
T ss_pred eehhhhHhhhhccccc------------------cccHHH----------------------------------HHHHH-
Confidence 9999999987763322 112222 44555
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETI 235 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~ 235 (640)
+||++|||+.. ..+|-| |+|||+.+.|||||+| +|+||+||+...+..
T Consensus 281 ---------------------ellnqmdgfdq----~~nvkv-imatnradtldpallrpgrldrkiefplpdrrqkrlv 334 (408)
T KOG0727|consen 281 ---------------------ELLNQMDGFDQ----TTNVKV-IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 334 (408)
T ss_pred ---------------------HHHHhccCcCc----ccceEE-EEecCcccccCHhhcCCccccccccCCCCchhhhhhh
Confidence 89999999999 899999 9999999999999999 999999996666655
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccccccc
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRK 315 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~ 315 (640)
+ ..+.. .+++.+++|++.+..+-+.+||+||..+|+ ++.+.+.|+++.-+ ...
T Consensus 335 f-~tits------------------km~ls~~vdle~~v~rpdkis~adi~aicq-------eagm~avr~nryvv-l~k 387 (408)
T KOG0727|consen 335 F-STITS------------------KMNLSDEVDLEDLVARPDKISGADINAICQ-------EAGMLAVRENRYVV-LQK 387 (408)
T ss_pred H-Hhhhh------------------cccCCcccCHHHHhcCccccchhhHHHHHH-------HHhHHHHHhcceee-eHH
Confidence 5 33332 455678999999999999999999999999 99999999988877 889
Q ss_pred ccchhhhhhccC
Q psy10020 316 KLEEEYSIELGS 327 (640)
Q Consensus 316 di~~~~ai~~~~ 327 (640)
|| +++-..++
T Consensus 388 d~--e~ay~~~v 397 (408)
T KOG0727|consen 388 DF--EKAYKTVV 397 (408)
T ss_pred HH--HHHHHhhc
Confidence 99 66655443
No 20
>KOG0726|consensus
Probab=99.95 E-value=2.7e-29 Score=249.84 Aligned_cols=214 Identities=26% Similarity=0.276 Sum_probs=185.6
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
.++.+|+.|+..|+.+|+|++|||+||||||.|++++|+.....|+.+-++++...|.|+..+.++.+|+ ++|+|+
T Consensus 203 LPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIv 282 (440)
T KOG0726|consen 203 LPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 282 (440)
T ss_pred CCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceE
Confidence 3578999999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
||||+|+++.+|-... +..++|. ++++-
T Consensus 283 FiDEIdAiGtKRyds~--------------------SggerEi--------------------------------QrtmL 310 (440)
T KOG0726|consen 283 FIDEIDAIGTKRYDSN--------------------SGGEREI--------------------------------QRTML 310 (440)
T ss_pred EeehhhhhccccccCC--------------------CccHHHH--------------------------------HHHHH
Confidence 9999999998775111 2223321 45555
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----HH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN----RE 230 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~----~~ 230 (640)
.||+++|||.+ +..|-| |+|||+.+.|||||+| +|.|++|| +.
T Consensus 311 ----------------------ELLNQldGFds----rgDvKv-imATnrie~LDPaLiRPGrIDrKIef~~pDe~Tkkk 363 (440)
T KOG0726|consen 311 ----------------------ELLNQLDGFDS----RGDVKV-IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKK 363 (440)
T ss_pred ----------------------HHHHhccCccc----cCCeEE-EEecccccccCHhhcCCCccccccccCCCchhhhce
Confidence 89999999999 999999 9999999999999999 99999999 45
Q ss_pred HHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcc
Q psy10020 231 IAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKE 310 (640)
Q Consensus 231 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ 310 (640)
||..|. .++ .+..+++++.+-..-+.+|||||..+|. ++.+.+.|+.+.+
T Consensus 364 If~IHT-s~M----------------------tl~~dVnle~li~~kddlSGAdIkAict-------EaGllAlRerRm~ 413 (440)
T KOG0726|consen 364 IFQIHT-SRM----------------------TLAEDVNLEELIMTKDDLSGADIKAICT-------EAGLLALRERRMK 413 (440)
T ss_pred eEEEee-ccc----------------------chhccccHHHHhhcccccccccHHHHHH-------HHhHHHHHHHHhh
Confidence 555555 333 3356899999999999999999999999 9999999999989
Q ss_pred cccccccchhhhhhccCCCC
Q psy10020 311 VMLRKKLEEEYSIELGSPID 330 (640)
Q Consensus 311 ii~~~di~~~~ai~~~~~g~ 330 (640)
+ +++|| ..|.++++-..
T Consensus 414 v-t~~DF--~ka~e~V~~~K 430 (440)
T KOG0726|consen 414 V-TMEDF--KKAKEKVLYKK 430 (440)
T ss_pred c-cHHHH--HHHHHHHHHhc
Confidence 8 99999 88888775443
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=2.7e-28 Score=239.55 Aligned_cols=209 Identities=26% Similarity=0.371 Sum_probs=172.2
Q ss_pred ccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
|..|+.+|+.|.++ .|+++|++||||||||+++|++|++...|++.+....+...++|....+++.+|. .+||
T Consensus 136 i~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPc 212 (368)
T COG1223 136 IMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPC 212 (368)
T ss_pred HHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCe
Confidence 45788999998887 5889999999999999999999999999999999999999999999999999998 8899
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
|+|+||+|+++..|.-.+ . .. +. ...
T Consensus 213 ivFiDE~DAiaLdRryQe--------------l-----RG-DV----------------------------------sEi 238 (368)
T COG1223 213 IVFIDELDAIALDRRYQE--------------L-----RG-DV----------------------------------SEI 238 (368)
T ss_pred EEEehhhhhhhhhhhHHH--------------h-----cc-cH----------------------------------HHH
Confidence 999999999997664100 0 00 11 346
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCccc----HH
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVN----RE 230 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~----~~ 230 (640)
+| .||++|||+.. +.||+. |+|||+|+.||||++. .|+|.+|+ .+
T Consensus 239 VN----------------------ALLTelDgi~e----neGVvt-IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ 291 (368)
T COG1223 239 VN----------------------ALLTELDGIKE----NEGVVT-IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLE 291 (368)
T ss_pred HH----------------------HHHHhccCccc----CCceEE-EeecCChhhcCHHHHhhhhheeeeeCCChHHHHH
Confidence 78 89999999998 999999 9999999999999998 99999999 44
Q ss_pred HHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHH-HHhccCc
Q psy10020 231 IAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILN-LKLNLEK 309 (640)
Q Consensus 231 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~-~ar~~~~ 309 (640)
|++.|+ +++ +++-+.++.+++..|.||||.||.+-+- ..++. +..+.+.
T Consensus 292 ile~y~-k~~----------------------Plpv~~~~~~~~~~t~g~SgRdikekvl-------K~aLh~Ai~ed~e 341 (368)
T COG1223 292 ILEYYA-KKF----------------------PLPVDADLRYLAAKTKGMSGRDIKEKVL-------KTALHRAIAEDRE 341 (368)
T ss_pred HHHHHH-HhC----------------------CCccccCHHHHHHHhCCCCchhHHHHHH-------HHHHHHHHHhchh
Confidence 455554 333 3466788999999999999999998776 55554 4455555
Q ss_pred ccccccccchhhhhhccCC
Q psy10020 310 EVMLRKKLEEEYSIELGSP 328 (640)
Q Consensus 310 ~ii~~~di~~~~ai~~~~~ 328 (640)
.| +.+|| +.|+.+...
T Consensus 342 ~v-~~edi--e~al~k~r~ 357 (368)
T COG1223 342 KV-EREDI--EKALKKERK 357 (368)
T ss_pred hh-hHHHH--HHHHHhhcc
Confidence 55 99999 888776433
No 22
>KOG0736|consensus
Probab=99.95 E-value=1.3e-28 Score=270.89 Aligned_cols=217 Identities=25% Similarity=0.334 Sum_probs=176.9
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
.+++++++|.. |+....|+|||||||||||.+||++|.++...|+.+.|-++..+|.|+.++++|.+|+ .+||+|
T Consensus 690 lPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVI 768 (953)
T KOG0736|consen 690 LPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVI 768 (953)
T ss_pred CcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEE
Confidence 34677777765 7888899999999999999999999999999999999999999999999999999999 679999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
|+||+|+++|.|+..++ ++.. | +++++
T Consensus 769 FFDELDSlAP~RG~sGD----------SGGV------------M-------------------------------DRVVS 795 (953)
T KOG0736|consen 769 FFDELDSLAPNRGRSGD----------SGGV------------M-------------------------------DRVVS 795 (953)
T ss_pred EeccccccCccCCCCCC----------cccc------------H-------------------------------HHHHH
Confidence 99999999999985444 1111 1 67888
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc-----H
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN-----R 229 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~-----~ 229 (640)
+||.+|||+.. ++...|+| |||||||+-|||||+| -++++.++ .
T Consensus 796 ----------------------QLLAELDgls~--~~s~~VFV-iGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 796 ----------------------QLLAELDGLSD--SSSQDVFV-IGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred ----------------------HHHHHhhcccC--CCCCceEE-EecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 99999999996 45889999 9999999999999999 77888777 3
Q ss_pred HHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCC-CCCccchhhhhhcchHHHHHHHHHHHhccC
Q psy10020 230 EIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLP-QTSTASNVNQSHNIPQEIYDDILNLKLNLE 308 (640)
Q Consensus 230 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~-G~sgadi~~l~~~~~a~~~~a~~~~ar~~~ 308 (640)
.+++... ++ +.++.++|+..+|++|+ .|||||+-.+|. .+-+.+.++..
T Consensus 851 ~vL~AlT-rk----------------------FkLdedVdL~eiAk~cp~~~TGADlYsLCS-------dA~l~AikR~i 900 (953)
T KOG0736|consen 851 RVLEALT-RK----------------------FKLDEDVDLVEIAKKCPPNMTGADLYSLCS-------DAMLAAIKRTI 900 (953)
T ss_pred HHHHHHH-HH----------------------ccCCCCcCHHHHHhhCCcCCchhHHHHHHH-------HHHHHHHHHHH
Confidence 3444443 33 34578999999999986 799999999999 66665554432
Q ss_pred ----------------cccccccccchhhhhhccCCCCCC
Q psy10020 309 ----------------KEVMLRKKLEEEYSIELGSPIDTS 332 (640)
Q Consensus 309 ----------------~~ii~~~di~~~~ai~~~~~g~~~ 332 (640)
.-+|+++|| ..++++..+....
T Consensus 901 ~~ie~g~~~~~e~~~~~v~V~~eDf--lks~~~l~PSvS~ 938 (953)
T KOG0736|consen 901 HDIESGTISEEEQESSSVRVTMEDF--LKSAKRLQPSVSE 938 (953)
T ss_pred HHhhhccccccccCCceEEEEHHHH--HHHHHhcCCcccH
Confidence 124577777 7777776666553
No 23
>KOG0729|consensus
Probab=99.95 E-value=1.2e-28 Score=242.52 Aligned_cols=217 Identities=24% Similarity=0.256 Sum_probs=186.5
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++-+|+-|-++|+.+|+|+|++||||||||.++|++|+..+.-|+.+-++.+..+|.|+.+..++.+|+ ..-|++|
T Consensus 196 pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciif 275 (435)
T KOG0729|consen 196 PLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIF 275 (435)
T ss_pred cccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEE
Confidence 366889999999999999999999999999999999999999999999999999999999999999999 4569999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
+||+|+++..|-.++. +++.+. ++++-
T Consensus 276 fdeidaiggarfddg~------------------ggdnev----------------------------------qrtml- 302 (435)
T KOG0729|consen 276 FDEIDAIGGARFDDGA------------------GGDNEV----------------------------------QRTML- 302 (435)
T ss_pred eeccccccCccccCCC------------------CCcHHH----------------------------------HHHHH-
Confidence 9999999988864432 233333 45555
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----HHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN----REI 231 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~----~~i 231 (640)
+|+++|||+.. +.++-| ++|||+|+.|||||+| +++|.+|| ..|
T Consensus 303 ---------------------eli~qldgfdp----rgnikv-lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i 356 (435)
T KOG0729|consen 303 ---------------------ELINQLDGFDP----RGNIKV-LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHI 356 (435)
T ss_pred ---------------------HHHHhccCCCC----CCCeEE-EeecCCCCCcCHhhcCCcccccceeccCCccccccee
Confidence 79999999999 999999 9999999999999999 99999999 445
Q ss_pred HHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccc
Q psy10020 232 AETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEV 311 (640)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~i 311 (640)
|+.|. + .+++..++-|+.||++|+.-+|++|..+|. ++.+-+.|..+...
T Consensus 357 ~kiha-k----------------------smsverdir~ellarlcpnstgaeirsvct-------eagmfairarrk~a 406 (435)
T KOG0729|consen 357 FKIHA-K----------------------SMSVERDIRFELLARLCPNSTGAEIRSVCT-------EAGMFAIRARRKVA 406 (435)
T ss_pred EEEec-c----------------------ccccccchhHHHHHhhCCCCcchHHHHHHH-------HhhHHHHHHHhhhh
Confidence 56555 2 334466899999999999999999999999 88887777766666
Q ss_pred ccccccchhhhhhccCCCCCCcc
Q psy10020 312 MLRKKLEEEYSIELGSPIDTSRS 334 (640)
Q Consensus 312 i~~~di~~~~ai~~~~~g~~~~~ 334 (640)
+..|| .+|+.+++.|..+-+
T Consensus 407 -tekdf--l~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 407 -TEKDF--LDAVNKVVKGYAKFS 426 (435)
T ss_pred -hHHHH--HHHHHHHHHHHHhcc
Confidence 88999 999999988876544
No 24
>KOG0737|consensus
Probab=99.95 E-value=5.6e-28 Score=249.22 Aligned_cols=193 Identities=24% Similarity=0.324 Sum_probs=158.4
Q ss_pred cccccccccccccC-cccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 4 VDYLKRPEYYQNLG-AKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 4 v~~l~~~~~l~~l~-l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
+.++..|++|...+ +..++|+||+||||||||.+++++|.+.+..|+.++.+.+.++|.|+..+.++.+|. .+||
T Consensus 109 ilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~ 188 (386)
T KOG0737|consen 109 ILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPS 188 (386)
T ss_pred hhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcc
Confidence 44567788885433 346889999999999999999999999999999999999999999999999999987 8899
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
+|||||+|++...|. ..++|.| ...
T Consensus 189 iIFIDEvds~L~~R~------------------------s~dHEa~-------------------------------a~m 213 (386)
T KOG0737|consen 189 IIFIDEVDSFLGQRR------------------------STDHEAT-------------------------------AMM 213 (386)
T ss_pred eeehhhHHHHHhhcc------------------------cchHHHH-------------------------------HHH
Confidence 999999999997663 2233322 223
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCccc----HH
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVN----RE 230 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~----~~ 230 (640)
-+ +|....||+.+ +.+..|+| +||||||..||.|++| .++|++|+ +.
T Consensus 214 K~----------------------eFM~~WDGl~s--~~~~rVlV-lgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~k 268 (386)
T KOG0737|consen 214 KN----------------------EFMALWDGLSS--KDSERVLV-LGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRK 268 (386)
T ss_pred HH----------------------HHHHHhccccC--CCCceEEE-EeCCCCCccHHHHHHHhCcceeeeCCCchhhHHH
Confidence 34 89899999998 44556999 9999999999999999 99999999 44
Q ss_pred HHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhc
Q psy10020 231 IAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLN 306 (640)
Q Consensus 231 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~ 306 (640)
|++.+| + ..++++++|++.+|.+|+||||+||.++|. .+++...|+
T Consensus 269 ILkviL-k----------------------~e~~e~~vD~~~iA~~t~GySGSDLkelC~-------~Aa~~~ire 314 (386)
T KOG0737|consen 269 ILKVIL-K----------------------KEKLEDDVDLDEIAQMTEGYSGSDLKELCR-------LAALRPIRE 314 (386)
T ss_pred HHHHHh-c----------------------ccccCcccCHHHHHHhcCCCcHHHHHHHHH-------HHhHhHHHH
Confidence 555555 1 223457999999999999999999999999 777766555
No 25
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=258.58 Aligned_cols=217 Identities=24% Similarity=0.292 Sum_probs=177.1
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
.++.++..|+.+|+..|+|++|+||||||||++++++|+.++.+++.+.+..+...+.++....++.+|. .+|++|
T Consensus 163 ~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~IL 242 (398)
T PTZ00454 163 LPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSII 242 (398)
T ss_pred HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEE
Confidence 3567889999999999999999999999999999999999999999999998888888888888888876 689999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
|+||+|.++..+..... +.+.+. ++.+.
T Consensus 243 fIDEID~i~~~r~~~~~------------------~~d~~~----------------------------------~r~l~ 270 (398)
T PTZ00454 243 FIDEVDSIATKRFDAQT------------------GADREV----------------------------------QRILL 270 (398)
T ss_pred EEECHhhhccccccccC------------------CccHHH----------------------------------HHHHH
Confidence 99999999877641111 011111 34455
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAET 234 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~ 234 (640)
.||..+|++.. ..+++| |+|||+++.||||++| .|+|++|+.+.+..
T Consensus 271 ----------------------~LL~~ld~~~~----~~~v~V-I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~ 323 (398)
T PTZ00454 271 ----------------------ELLNQMDGFDQ----TTNVKV-IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 323 (398)
T ss_pred ----------------------HHHHHhhccCC----CCCEEE-EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHH
Confidence 78899999877 778999 9999999999999997 79999999444444
Q ss_pred HHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccc
Q psy10020 235 ILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLR 314 (640)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~ 314 (640)
++ +.+.. ...+..++|++.+|..|+||||+||..+|+ ++++.+.++....+ +.
T Consensus 324 Il-~~~~~------------------~~~l~~dvd~~~la~~t~g~sgaDI~~l~~-------eA~~~A~r~~~~~i-~~ 376 (398)
T PTZ00454 324 IF-QTITS------------------KMNLSEEVDLEDFVSRPEKISAADIAAICQ-------EAGMQAVRKNRYVI-LP 376 (398)
T ss_pred HH-HHHHh------------------cCCCCcccCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHcCCCcc-CH
Confidence 44 22211 123356789999999999999999999999 99998888887666 99
Q ss_pred cccchhhhhhccCCC
Q psy10020 315 KKLEEEYSIELGSPI 329 (640)
Q Consensus 315 ~di~~~~ai~~~~~g 329 (640)
+|| +.|+.++..+
T Consensus 377 ~df--~~A~~~v~~~ 389 (398)
T PTZ00454 377 KDF--EKGYKTVVRK 389 (398)
T ss_pred HHH--HHHHHHHHhc
Confidence 999 9999887655
No 26
>KOG0739|consensus
Probab=99.95 E-value=1.2e-27 Score=238.71 Aligned_cols=197 Identities=20% Similarity=0.231 Sum_probs=162.4
Q ss_pred ccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
++.+++.|++|.. +-.+.+|+||+||||||||.|++++|.+.+..|+.++.+++.+.|.|+.++.++.+|. +.|+
T Consensus 149 VILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPS 227 (439)
T KOG0739|consen 149 VILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPS 227 (439)
T ss_pred eeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCc
Confidence 3455667777776 4567889999999999999999999999999999999999999999999999999998 8899
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
||||||+|+++.+|+.. .++. + +++
T Consensus 228 IIFiDEiDslcg~r~en----------------------Esea--s-------------------------------RRI 252 (439)
T KOG0739|consen 228 IIFIDEIDSLCGSRSEN----------------------ESEA--S-------------------------------RRI 252 (439)
T ss_pred EEEeehhhhhccCCCCC----------------------chHH--H-------------------------------HHH
Confidence 99999999999887611 1111 1 445
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCccc----HH
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVN----RE 230 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~----~~ 230 (640)
-+ +||.+|.|+-. ++.+|+| +||||-||.||.|++| +|+||+|+ ..
T Consensus 253 KT----------------------EfLVQMqGVG~---d~~gvLV-LgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~ 306 (439)
T KOG0739|consen 253 KT----------------------EFLVQMQGVGN---DNDGVLV-LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAR 306 (439)
T ss_pred HH----------------------HHHHhhhcccc---CCCceEE-EecCCCchhHHHHHHHHhhcceeccCCcHHHhhh
Confidence 55 89999999766 5889999 9999999999999999 99999999 44
Q ss_pred HHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcc
Q psy10020 231 IAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKE 310 (640)
Q Consensus 231 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ 310 (640)
+|+.|+ ....+ .-.+-|+.+||.+|+||||+||.-+++ .+++.-.|+....
T Consensus 307 MF~lhl-G~tp~---------------------~LT~~d~~eL~~kTeGySGsDisivVr-------DalmePvRkvqsA 357 (439)
T KOG0739|consen 307 MFKLHL-GDTPH---------------------VLTEQDFKELARKTEGYSGSDISIVVR-------DALMEPVRKVQSA 357 (439)
T ss_pred hheecc-CCCcc---------------------ccchhhHHHHHhhcCCCCcCceEEEeh-------hhhhhhHHHhhhh
Confidence 566665 22222 224678999999999999999999999 7888777775544
No 27
>KOG0735|consensus
Probab=99.94 E-value=1.1e-26 Score=253.62 Aligned_cols=185 Identities=22% Similarity=0.259 Sum_probs=162.5
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
++-+.+.+|.+..+.++.|+||+||||||||.|+.++|...+..++.+.|-++..+|.|..++.+|.+|. ..|||+
T Consensus 685 ~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiL 764 (952)
T KOG0735|consen 685 WPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCIL 764 (952)
T ss_pred ccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEE
Confidence 4467789999999999999999999999999999999999999999999999999999999999999998 679999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
|+||+|+++|+|+-+.. .-. ++++|
T Consensus 765 FFDEfdSiAPkRGhDsT---------------------GVT----------------------------------DRVVN 789 (952)
T KOG0735|consen 765 FFDEFDSIAPKRGHDST---------------------GVT----------------------------------DRVVN 789 (952)
T ss_pred EeccccccCcccCCCCC---------------------Cch----------------------------------HHHHH
Confidence 99999999999983332 111 67899
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAET 234 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~ 234 (640)
+||++|||... -.||+| ++||.||+.|||||+| .++.++|+..-+-.
T Consensus 790 ----------------------QlLTelDG~Eg----l~GV~i-~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~ 842 (952)
T KOG0735|consen 790 ----------------------QLLTELDGAEG----LDGVYI-LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLE 842 (952)
T ss_pred ----------------------HHHHhhccccc----cceEEE-EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHH
Confidence 99999999999 999999 9999999999999999 88999999444444
Q ss_pred HHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhh
Q psy10020 235 ILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSH 290 (640)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~ 290 (640)
+| +.+.. .+..+.++|++.+|.+|+||||||+..++-
T Consensus 843 il-~~ls~------------------s~~~~~~vdl~~~a~~T~g~tgADlq~ll~ 879 (952)
T KOG0735|consen 843 IL-QVLSN------------------SLLKDTDVDLECLAQKTDGFTGADLQSLLY 879 (952)
T ss_pred HH-HHHhh------------------ccCCccccchHHHhhhcCCCchhhHHHHHH
Confidence 44 33332 234467899999999999999999999998
No 28
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.94 E-value=1.8e-26 Score=250.55 Aligned_cols=220 Identities=26% Similarity=0.298 Sum_probs=179.9
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++.++..|+.+|+..|+|+||+||||||||++++++|..++.+++.+++..+...+.+.....++.+|. .+|++||
T Consensus 150 pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Ilf 229 (389)
T PRK03992 150 PLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIF 229 (389)
T ss_pred HhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEE
Confidence 466788999999999999999999999999999999999999999999999988888888888888886 5789999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
+||+|.++..+..... +++.+. ++.+.
T Consensus 230 iDEiD~l~~~r~~~~~------------------~~~~~~----------------------------------~~~l~- 256 (389)
T PRK03992 230 IDEIDAIAAKRTDSGT------------------SGDREV----------------------------------QRTLM- 256 (389)
T ss_pred EechhhhhcccccCCC------------------CccHHH----------------------------------HHHHH-
Confidence 9999999977652211 011111 34455
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETI 235 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~ 235 (640)
.||.+++++.. ..+++| |+|||+++.+|++++| .|+|++|+.+.+..+
T Consensus 257 ---------------------~lL~~ld~~~~----~~~v~V-I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~I 310 (389)
T PRK03992 257 ---------------------QLLAEMDGFDP----RGNVKI-IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEI 310 (389)
T ss_pred ---------------------HHHHhccccCC----CCCEEE-EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHH
Confidence 78888998877 678999 9999999999999996 799999995555555
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccccccc
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRK 315 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~ 315 (640)
| +.... ...++.++|+..||..|+||||+||..+|. ++++.+.++....| +.+
T Consensus 311 l-~~~~~------------------~~~~~~~~~~~~la~~t~g~sgadl~~l~~-------eA~~~a~~~~~~~i-~~~ 363 (389)
T PRK03992 311 L-KIHTR------------------KMNLADDVDLEELAELTEGASGADLKAICT-------EAGMFAIRDDRTEV-TME 363 (389)
T ss_pred H-HHHhc------------------cCCCCCcCCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHcCCCCc-CHH
Confidence 5 22211 223345789999999999999999999999 99998888887776 999
Q ss_pred ccchhhhhhccCCCCCCc
Q psy10020 316 KLEEEYSIELGSPIDTSR 333 (640)
Q Consensus 316 di~~~~ai~~~~~g~~~~ 333 (640)
|| ..|+.++.++....
T Consensus 364 d~--~~A~~~~~~~~~~~ 379 (389)
T PRK03992 364 DF--LKAIEKVMGKEEKD 379 (389)
T ss_pred HH--HHHHHHHhcccccc
Confidence 99 99999987765543
No 29
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.93 E-value=2.9e-26 Score=249.83 Aligned_cols=216 Identities=26% Similarity=0.272 Sum_probs=174.6
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++.++..|+.+++..++|++|+||||||||++++++|+.++.+++.+.++++...+.+.....++.+|. .+|+++|
T Consensus 202 pl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILf 281 (438)
T PTZ00361 202 PLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVF 281 (438)
T ss_pred hhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEe
Confidence 366788999999999999999999999999999999999999999999999988888888887888876 6799999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
|||+|.++.++..... ++..+. .+++.
T Consensus 282 IDEID~l~~kR~~~~s------------------gg~~e~----------------------------------qr~ll- 308 (438)
T PTZ00361 282 IDEIDAIGTKRYDATS------------------GGEKEI----------------------------------QRTML- 308 (438)
T ss_pred HHHHHHHhccCCCCCC------------------cccHHH----------------------------------HHHHH-
Confidence 9999999876652111 011111 33444
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETI 235 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~ 235 (640)
.||+.+|++.. ..++.| |+|||+++.||++++| +|+|++||.+.+..+
T Consensus 309 ---------------------~LL~~Ldg~~~----~~~V~V-I~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~I 362 (438)
T PTZ00361 309 ---------------------ELLNQLDGFDS----RGDVKV-IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRI 362 (438)
T ss_pred ---------------------HHHHHHhhhcc----cCCeEE-EEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHH
Confidence 78889999877 778999 9999999999999997 999999994444444
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccccccc
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRK 315 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~ 315 (640)
| +.... ...+..++|++.++..|+||||+||..+|. ++++.+.++....| +.+
T Consensus 363 l-~~~~~------------------k~~l~~dvdl~~la~~t~g~sgAdI~~i~~-------eA~~~Alr~~r~~V-t~~ 415 (438)
T PTZ00361 363 F-EIHTS------------------KMTLAEDVDLEEFIMAKDELSGADIKAICT-------EAGLLALRERRMKV-TQA 415 (438)
T ss_pred H-HHHHh------------------cCCCCcCcCHHHHHHhcCCCCHHHHHHHHH-------HHHHHHHHhcCCcc-CHH
Confidence 4 21111 122346789999999999999999999999 88888888877766 999
Q ss_pred ccchhhhhhccCCC
Q psy10020 316 KLEEEYSIELGSPI 329 (640)
Q Consensus 316 di~~~~ai~~~~~g 329 (640)
|| ..|++++...
T Consensus 416 D~--~~A~~~v~~~ 427 (438)
T PTZ00361 416 DF--RKAKEKVLYR 427 (438)
T ss_pred HH--HHHHHHHHhh
Confidence 99 8999887544
No 30
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6e-26 Score=254.63 Aligned_cols=211 Identities=26% Similarity=0.335 Sum_probs=178.6
Q ss_pred ccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccccc
Q psy10020 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFL 82 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~i 82 (640)
+..++.|...++..++|+||+||||||||++++++|..++.+|+.+.+.++.+.|.|++++.++.+|. .+||+||+
T Consensus 262 ~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFi 341 (494)
T COG0464 262 LKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFI 341 (494)
T ss_pred hhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEE
Confidence 56677888889999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred chhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhh
Q psy10020 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKE 162 (640)
Q Consensus 83 deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (640)
||+|++.+.|+...+ ... .++++
T Consensus 342 DEiDs~~~~r~~~~~---------------------~~~----------------------------------~r~~~-- 364 (494)
T COG0464 342 DEIDSLASGRGPSED---------------------GSG----------------------------------RRVVG-- 364 (494)
T ss_pred EchhhhhccCCCCCc---------------------hHH----------------------------------HHHHH--
Confidence 999999988872221 111 35667
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----HHHH
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN----REIA 232 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~----~~i~ 232 (640)
+||.++|++.. ..+|+| |+|||+|+.+|+|++| .++|++|| .+||
T Consensus 365 --------------------~lL~~~d~~e~----~~~v~v-i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~ 419 (494)
T COG0464 365 --------------------QLLTELDGIEK----AEGVLV-IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIF 419 (494)
T ss_pred --------------------HHHHHhcCCCc----cCceEE-EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHH
Confidence 89999999998 889999 9999999999999999 99999999 5566
Q ss_pred HHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccc
Q psy10020 233 ETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVM 312 (640)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii 312 (640)
+.|+ +.... .+..++|+..+++.|+||||+||..+|. ++++...++.....+
T Consensus 420 ~~~~-~~~~~--------------------~~~~~~~~~~l~~~t~~~sgadi~~i~~-------ea~~~~~~~~~~~~~ 471 (494)
T COG0464 420 KIHL-RDKKP--------------------PLAEDVDLEELAEITEGYSGADIAALVR-------EAALEALREARRREV 471 (494)
T ss_pred HHHh-cccCC--------------------cchhhhhHHHHHHHhcCCCHHHHHHHHH-------HHHHHHHHHhccCCc
Confidence 6666 22111 1245899999999999999999999999 888887777733334
Q ss_pred cccccchhhhhhccCCC
Q psy10020 313 LRKKLEEEYSIELGSPI 329 (640)
Q Consensus 313 ~~~di~~~~ai~~~~~g 329 (640)
+++|| .+|+..+.+.
T Consensus 472 ~~~~~--~~a~~~~~p~ 486 (494)
T COG0464 472 TLDDF--LDALKKIKPS 486 (494)
T ss_pred cHHHH--HHHHHhcCCC
Confidence 99999 8888875544
No 31
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=7.5e-26 Score=264.58 Aligned_cols=219 Identities=22% Similarity=0.304 Sum_probs=177.9
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++.+++.++.+++..++|+||+||||||||++++++|..++.+++.+++.++.+.|.|+.+..++.+|. .+||+||
T Consensus 472 ~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iif 551 (733)
T TIGR01243 472 PLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIF 551 (733)
T ss_pred hhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEE
Confidence 467788999999999999999999999999999999999999999999999999999999999999987 7789999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
|||+|.+++.++.... +... +++++
T Consensus 552 iDEid~l~~~r~~~~~--------------------~~~~----------------------------------~~~~~- 576 (733)
T TIGR01243 552 FDEIDAIAPARGARFD--------------------TSVT----------------------------------DRIVN- 576 (733)
T ss_pred EEChhhhhccCCCCCC--------------------ccHH----------------------------------HHHHH-
Confidence 9999999987752111 1111 45677
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETI 235 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~ 235 (640)
+||.+||++.. ..+|+| |||||+|+.||||++| .++|++||.+.+..+
T Consensus 577 ---------------------~lL~~ldg~~~----~~~v~v-I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i 630 (733)
T TIGR01243 577 ---------------------QLLTEMDGIQE----LSNVVV-IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEI 630 (733)
T ss_pred ---------------------HHHHHhhcccC----CCCEEE-EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence 89999999887 788999 9999999999999997 899999996555555
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhcc--------
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNL-------- 307 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~-------- 307 (640)
| +.... ...+..++|++.||..|+||||+||..+|+ ++++.+.++.
T Consensus 631 ~-~~~~~------------------~~~~~~~~~l~~la~~t~g~sgadi~~~~~-------~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 631 F-KIHTR------------------SMPLAEDVDLEELAEMTEGYTGADIEAVCR-------EAAMAALRESIGSPAKEK 684 (733)
T ss_pred H-HHHhc------------------CCCCCccCCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHHHhhhccchh
Confidence 5 22111 233456889999999999999999999999 6666655531
Q ss_pred ---------CcccccccccchhhhhhccCCCCCCc
Q psy10020 308 ---------EKEVMLRKKLEEEYSIELGSPIDTSR 333 (640)
Q Consensus 308 ---------~~~ii~~~di~~~~ai~~~~~g~~~~ 333 (640)
....|+.+|| +.|+.++.+.....
T Consensus 685 ~~~~~~~~~~~~~i~~~~f--~~al~~~~ps~~~~ 717 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHF--LEALKKVKPSVSKE 717 (733)
T ss_pred hhcccccccccCcccHHHH--HHHHHHcCCCCCHH
Confidence 0113488888 88888877776543
No 32
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.93 E-value=1.3e-25 Score=248.10 Aligned_cols=203 Identities=18% Similarity=0.238 Sum_probs=161.2
Q ss_pred ccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccccchhhhh
Q psy10020 13 YQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFLHEITIF 88 (640)
Q Consensus 13 l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ideid~l 88 (640)
...+|+..|+|+||+||||||||+++|+||+.++.+++.++...+...+.|+.+.+++.+|. .+||+|||||+|.+
T Consensus 251 ~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~ 330 (489)
T CHL00195 251 ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKA 330 (489)
T ss_pred HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhh
Confidence 35578899999999999999999999999999999999999999998899999999999887 78999999999998
Q ss_pred ccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHHhhh
Q psy10020 89 DLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKID 168 (640)
Q Consensus 89 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (640)
+..+...++ +... .++++
T Consensus 331 ~~~~~~~~d--------------------~~~~----------------------------------~rvl~-------- 348 (489)
T CHL00195 331 FSNSESKGD--------------------SGTT----------------------------------NRVLA-------- 348 (489)
T ss_pred hccccCCCC--------------------chHH----------------------------------HHHHH--------
Confidence 864431111 1111 34555
Q ss_pred HHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----HHHHHHHHHh
Q psy10020 169 AELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN----REIAETILLK 238 (640)
Q Consensus 169 ~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~----~~i~~~~l~~ 238 (640)
.|+..|+.. ..+|+| |+|||+++.|||+++| .++|++|+ .+||+.|+ +
T Consensus 349 --------------~lL~~l~~~------~~~V~v-IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l-~ 406 (489)
T CHL00195 349 --------------TFITWLSEK------KSPVFV-VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHL-Q 406 (489)
T ss_pred --------------HHHHHHhcC------CCceEE-EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHH-h
Confidence 677777642 457999 9999999999999997 79999999 45666665 3
Q ss_pred hhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccc
Q psy10020 239 NFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLE 318 (640)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~ 318 (640)
+... ....++|++.||..|+||||+||+++|+ +++..+..+. +.+ +.+||
T Consensus 407 ~~~~--------------------~~~~~~dl~~La~~T~GfSGAdI~~lv~-------eA~~~A~~~~-~~l-t~~dl- 456 (489)
T CHL00195 407 KFRP--------------------KSWKKYDIKKLSKLSNKFSGAEIEQSII-------EAMYIAFYEK-REF-TTDDI- 456 (489)
T ss_pred hcCC--------------------CcccccCHHHHHhhcCCCCHHHHHHHHH-------HHHHHHHHcC-CCc-CHHHH-
Confidence 3211 1123689999999999999999999999 7666665554 445 99999
Q ss_pred hhhhhhccCCCC
Q psy10020 319 EEYSIELGSPID 330 (640)
Q Consensus 319 ~~~ai~~~~~g~ 330 (640)
..|+..+.+..
T Consensus 457 -~~a~~~~~Pls 467 (489)
T CHL00195 457 -LLALKQFIPLA 467 (489)
T ss_pred -HHHHHhcCCCc
Confidence 89998887753
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=1e-24 Score=255.05 Aligned_cols=149 Identities=36% Similarity=0.503 Sum_probs=123.6
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++.+++.++.+++..++|++|+||||||||+++++||+.++.+++.+++..+...+.+.....++.+|. .+|++||
T Consensus 197 ~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~ 276 (733)
T TIGR01243 197 PMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIF 276 (733)
T ss_pred HhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEE
Confidence 367788999999999999999999999999999999999999999999998888888888888888887 6789999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
+||+|.+.+.+.... .+.+ .++++
T Consensus 277 iDEid~l~~~r~~~~----------------------~~~~---------------------------------~~~~~- 300 (733)
T TIGR01243 277 IDEIDAIAPKREEVT----------------------GEVE---------------------------------KRVVA- 300 (733)
T ss_pred eehhhhhcccccCCc----------------------chHH---------------------------------HHHHH-
Confidence 999999997765110 1110 34455
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETI 235 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~ 235 (640)
.|+..|+++.. +..++| |+|||+++.||++++| .+.|++|+.+.+..+
T Consensus 301 ---------------------~Ll~~ld~l~~----~~~viv-I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~I 354 (733)
T TIGR01243 301 ---------------------QLLTLMDGLKG----RGRVIV-IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEI 354 (733)
T ss_pred ---------------------HHHHHhhcccc----CCCEEE-EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHH
Confidence 78888898877 778999 9999999999999987 789999995545544
Q ss_pred H
Q psy10020 236 L 236 (640)
Q Consensus 236 l 236 (640)
+
T Consensus 355 l 355 (733)
T TIGR01243 355 L 355 (733)
T ss_pred H
Confidence 4
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.91 E-value=2.3e-24 Score=232.65 Aligned_cols=213 Identities=27% Similarity=0.284 Sum_probs=168.6
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++.++..|..+|+..|+|++|+||||||||+++++++..++.+++.+.+..+...+.+.....++..|. ..|++||
T Consensus 141 ~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~ 220 (364)
T TIGR01242 141 PLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIF 220 (364)
T ss_pred HhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEE
Confidence 356788899999999999999999999999999999999999999998888887777777777777776 5789999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
+||+|.+...+..... ++..+. .+.+.
T Consensus 221 iDEiD~l~~~~~~~~~------------------~~~~~~----------------------------------~~~l~- 247 (364)
T TIGR01242 221 IDEIDAIAAKRTDSGT------------------SGDREV----------------------------------QRTLM- 247 (364)
T ss_pred hhhhhhhccccccCCC------------------CccHHH----------------------------------HHHHH-
Confidence 9999999876642111 011111 33444
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETI 235 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~ 235 (640)
.++..++++.. ..++.| |+|||+++.+|++++| .++|++|+.+.+..+
T Consensus 248 ---------------------~ll~~ld~~~~----~~~v~v-I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~I 301 (364)
T TIGR01242 248 ---------------------QLLAELDGFDP----RGNVKV-IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEI 301 (364)
T ss_pred ---------------------HHHHHhhCCCC----CCCEEE-EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHH
Confidence 78888888776 678999 9999999999999986 789999995444444
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccccccc
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRK 315 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~ 315 (640)
+ +.... ...++.+++++.+|..|+||||+||..+|. ++++.+.++....| +.+
T Consensus 302 l-~~~~~------------------~~~l~~~~~~~~la~~t~g~sg~dl~~l~~-------~A~~~a~~~~~~~i-~~~ 354 (364)
T TIGR01242 302 L-KIHTR------------------KMKLAEDVDLEAIAKMTEGASGADLKAICT-------EAGMFAIREERDYV-TMD 354 (364)
T ss_pred H-HHHHh------------------cCCCCccCCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHhCCCcc-CHH
Confidence 4 22211 122345688999999999999999999999 88888888877776 999
Q ss_pred ccchhhhhhcc
Q psy10020 316 KLEEEYSIELG 326 (640)
Q Consensus 316 di~~~~ai~~~ 326 (640)
|| .+|++++
T Consensus 355 d~--~~a~~~~ 363 (364)
T TIGR01242 355 DF--IKAVEKV 363 (364)
T ss_pred HH--HHHHHHh
Confidence 99 8887754
No 35
>KOG0651|consensus
Probab=99.90 E-value=8.4e-25 Score=220.06 Aligned_cols=204 Identities=25% Similarity=0.313 Sum_probs=167.0
Q ss_pred cccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccc
Q psy10020 4 VDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCR 79 (640)
Q Consensus 4 v~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~i 79 (640)
..++.++.++..+|+.+|+|++||||||+|||.+++++|...+..++.+..+.+.+.+.|+....++..|. ++||+
T Consensus 149 elpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pci 228 (388)
T KOG0651|consen 149 ELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCI 228 (388)
T ss_pred EeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999887 88999
Q ss_pred cccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHh
Q psy10020 80 VFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCL 159 (640)
Q Consensus 80 l~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (640)
+|+||+|+++.++..... ...+|+ ++++
T Consensus 229 ifmdeiDAigGRr~se~T--------------------s~drei--------------------------------qrTL 256 (388)
T KOG0651|consen 229 IFMDEIDAIGGRRFSEGT--------------------SSDREI--------------------------------QRTL 256 (388)
T ss_pred EeehhhhhhccEEecccc--------------------chhHHH--------------------------------HHHH
Confidence 999999999988852221 122210 3444
Q ss_pred hhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccH----
Q psy10020 160 RKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNR---- 229 (640)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~---- 229 (640)
= .|+++||++.. ...|-+ |+|||+|+.|||||+| .+++|+|+.
T Consensus 257 M----------------------eLlnqmdgfd~----l~rVk~-ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~ 309 (388)
T KOG0651|consen 257 M----------------------ELLNQMDGFDT----LHRVKT-IMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARL 309 (388)
T ss_pred H----------------------HHHHhhccchh----cccccE-EEecCCccccchhhcCCccccceeccCCcchhhce
Confidence 4 79999999998 899999 9999999999999999 999999993
Q ss_pred HHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCc
Q psy10020 230 EIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEK 309 (640)
Q Consensus 230 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~ 309 (640)
+|++.|- +.+.....+|.+.+...++||.|+|+.+.|. ++-+-++++...
T Consensus 310 ~I~Kih~-----------------------~~i~~~Geid~eaivK~~d~f~gad~rn~~t-------Eag~Fa~~~~~~ 359 (388)
T KOG0651|consen 310 GILKIHV-----------------------QPIDFHGEIDDEAILKLVDGFNGADLRNVCT-------EAGMFAIPEERD 359 (388)
T ss_pred eeEeecc-----------------------ccccccccccHHHHHHHHhccChHHHhhhcc-------cccccccchhhH
Confidence 3333332 2344456899999999999999999999999 555555555555
Q ss_pred cccccccc
Q psy10020 310 EVMLRKKL 317 (640)
Q Consensus 310 ~ii~~~di 317 (640)
.+ -.+++
T Consensus 360 ~v-l~Ed~ 366 (388)
T KOG0651|consen 360 EV-LHEDF 366 (388)
T ss_pred HH-hHHHH
Confidence 44 44555
No 36
>KOG0741|consensus
Probab=99.90 E-value=1.7e-24 Score=229.97 Aligned_cols=225 Identities=20% Similarity=0.192 Sum_probs=178.9
Q ss_pred ccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCC-CeEEecCchhhhhhccchhhhHhhhhh------------h
Q psy10020 9 RPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANV-PFLSMNGSEFIEMIGGLGAARVRTEVV------------F 75 (640)
Q Consensus 9 ~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~-~~i~v~~~~l~~~~~~~~~~~l~~~f~------------~ 75 (640)
.|++.+++|+..-+|+|||||||||||.++|.|...++. .--.+++-.+.++|+|+++..+|.+|. .
T Consensus 244 pp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 244 PPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred CHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 468899999999999999999999999999999987653 445678899999999999999999998 1
Q ss_pred cccccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHH
Q psy10020 76 LHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQ 155 (640)
Q Consensus 76 ~p~il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (640)
.-.||++||+|+++.+|+... ++..-+
T Consensus 324 gLHIIIFDEiDAICKqRGS~~-------------------g~TGVh---------------------------------- 350 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMA-------------------GSTGVH---------------------------------- 350 (744)
T ss_pred CceEEEehhhHHHHHhcCCCC-------------------CCCCcc----------------------------------
Confidence 225899999999998887222 234444
Q ss_pred HHHhhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc-
Q psy10020 156 EQCLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN- 228 (640)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~- 228 (640)
+.++| +||..|||+.+ -.+|+| ||.|||.+.||.||+| +++|.|||
T Consensus 351 D~VVN----------------------QLLsKmDGVeq----LNNILV-IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE 403 (744)
T KOG0741|consen 351 DTVVN----------------------QLLSKMDGVEQ----LNNILV-IGMTNRKDLIDEALLRPGRLEVQMEISLPDE 403 (744)
T ss_pred HHHHH----------------------HHHHhcccHHh----hhcEEE-EeccCchhhHHHHhcCCCceEEEEEEeCCCc
Confidence 67889 99999999999 889999 9999999999999999 89999999
Q ss_pred ---HHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHh
Q psy10020 229 ---REIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKL 305 (640)
Q Consensus 229 ---~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar 305 (640)
.+|++.|. +++.. +-.+++++|+.+||.+|..||||+|+.++. +.+..|+...-
T Consensus 404 ~gRlQIl~IHT-~rMre------------------~~~l~~dVdl~elA~lTKNfSGAEleglVk----sA~S~A~nR~v 460 (744)
T KOG0741|consen 404 KGRLQILKIHT-KRMRE------------------NNKLSADVDLKELAALTKNFSGAELEGLVK----SAQSFAMNRHV 460 (744)
T ss_pred cCceEEEEhhh-hhhhh------------------cCCCCCCcCHHHHHHHhcCCchhHHHHHHH----HHHHHHHHhhh
Confidence 77888888 77765 223567999999999999999999999999 22222332211
Q ss_pred ccC-----------cccccccccchhhhhhccCCCCCCccchhh
Q psy10020 306 NLE-----------KEVMLRKKLEEEYSIELGSPIDTSRSHRVL 338 (640)
Q Consensus 306 ~~~-----------~~ii~~~di~~~~ai~~~~~g~~~~~~~~~ 338 (640)
... .--|+++|| ..|++.+.+.+......+.
T Consensus 461 k~~~~~~~~~~~~e~lkV~r~DF--l~aL~dVkPAFG~see~l~ 502 (744)
T KOG0741|consen 461 KAGGKVEVDPVAIENLKVTRGDF--LNALEDVKPAFGISEEDLE 502 (744)
T ss_pred ccCcceecCchhhhheeecHHHH--HHHHHhcCcccCCCHHHHH
Confidence 111 112377888 8888887777665544443
No 37
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.90 E-value=2e-24 Score=247.90 Aligned_cols=274 Identities=14% Similarity=0.135 Sum_probs=201.6
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccch
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQ 359 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~ 359 (640)
++++++...+.|.++.+++..+..++...+++++++|+ +++...............++++||+|.+||+|...++++
T Consensus 216 is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEi---D~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 216 ISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEI---DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred EehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhH---hhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 57788888999999999999999999999999999999 555433221111112223567889999999998877655
Q ss_pred hccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEe---c---ccc
Q psy10020 360 VAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVL---S---SLL 433 (640)
Q Consensus 360 vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~---g---~~t 433 (640)
+ |+ ++|+++.+|+++++|+ +++.-+.+.+|+.. .|..++..+...+ ...+++.+ . ...
T Consensus 293 v--------Ia--aTN~p~~lD~Al~Rpg-Rfdr~i~v~~Pd~~---~R~~Il~~~~~~~--~l~~~~d~~~la~~t~G~ 356 (644)
T PRK10733 293 V--------IA--ATNRPDVLDPALLRPG-RFDRQVVVGLPDVR---GREQILKVHMRRV--PLAPDIDAAIIARGTPGF 356 (644)
T ss_pred E--------EE--ecCChhhcCHHHhCCc-ccceEEEcCCCCHH---HHHHHHHHHhhcC--CCCCcCCHHHHHhhCCCC
Confidence 4 44 4578999999999996 66766666666632 3445544433221 11222222 2 245
Q ss_pred chhhhhHHHHHHHHHHHhchhhhcccCCCCccc-ceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCC
Q psy10020 434 TVNKFASLVCRQVAFHESGHALVGWLLPHTDAL-LKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLP 512 (640)
Q Consensus 434 tGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v-~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~ 512 (640)
+||++ .++++.+|.++++.....+.+.+++.+ +++.+++..+ ...+.++ .++.++|||+|||+++++++
T Consensus 357 sgadl-~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~-----~~~~~~~----~~~~~a~he~gha~~~~~~~ 426 (644)
T PRK10733 357 SGADL-ANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERR-----SMVMTEA----QKESTAYHEAGHAIIGRLVP 426 (644)
T ss_pred CHHHH-HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccc-----cccccHH----HHHHHHHHHHHHHHHHHHcc
Confidence 67888 677777777777666566666666665 4454543221 1122222 26789999999999999999
Q ss_pred CCCcceeEeeecCCCCcccceeecccccc-ccChHhhhcchHHhhhcccCC--------------cchHHhhHHHHHHHH
Q psy10020 513 HTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEETLDPKKEMTVNREQP--------------PSHDKKKRKCLTEIS 577 (640)
Q Consensus 513 ~~~~v~k~TiipRg~~alG~~~~~p~~~~-~~t~~~~~~~i~~~~~~r~~~--------------~~~~~~~r~~l~~l~ 577 (640)
..++++|+||+|||. ++||+.+.|++++ ++|+.+++++|.+++|||++| .++..+|..+..||+
T Consensus 427 ~~~~~~~v~i~prg~-~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~ 505 (644)
T PRK10733 427 EHDPVHKVTIIPRGR-ALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVT 505 (644)
T ss_pred CCCceeEEEEeccCC-CcceeEECCCcccccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999995 9999999998775 789999999999999999887 577888999999999
Q ss_pred HHhHhH
Q psy10020 578 VTTMVL 583 (640)
Q Consensus 578 ~~ll~~ 583 (640)
+|+|..
T Consensus 506 ~~Gms~ 511 (644)
T PRK10733 506 QWGFSE 511 (644)
T ss_pred HhCCCc
Confidence 999975
No 38
>CHL00176 ftsH cell division protein; Validated
Probab=99.89 E-value=6.6e-24 Score=241.38 Aligned_cols=273 Identities=16% Similarity=0.172 Sum_probs=199.0
Q ss_pred CCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccc
Q psy10020 279 QTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCR 358 (640)
Q Consensus 279 G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~ 358 (640)
-++++++...+.|+++.+++.+|..++...++|+++||+ +++.+..+......+.-..++++|+|.+||+|....++
T Consensus 246 ~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEI---D~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 246 SISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEI---DAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred eccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecc---hhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 356788888889999999999999999999999999999 55543222111111222346788999999999876655
Q ss_pred hhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEe---c---cc
Q psy10020 359 QVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVL---S---SL 432 (640)
Q Consensus 359 ~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~---g---~~ 432 (640)
++ ++ ++|+++.+|++.++|+ +++..+.+.+|+. ..|..++..+.... ...+++.+ . ..
T Consensus 323 iV--------Ia--aTN~~~~LD~ALlRpG-RFd~~I~v~lPd~---~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IV--------IA--ATNRVDILDAALLRPG-RFDRQITVSLPDR---EGRLDILKVHARNK--KLSPDVSLELIARRTPG 386 (638)
T ss_pred eE--------EE--ecCchHhhhhhhhccc-cCceEEEECCCCH---HHHHHHHHHHHhhc--ccchhHHHHHHHhcCCC
Confidence 44 44 4588899999999996 6666666666652 33444544433221 11112211 1 23
Q ss_pred cchhhhhHHHHHHHHHHHhchhhhcccCCCCccc-ceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhC
Q psy10020 433 LTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL-LKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLL 511 (640)
Q Consensus 433 ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v-~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~ 511 (640)
.+|+++ .+.++.+|+.++++....+.+.+.+.+ .+++.++.+. .. .+++ .++.+||||+|||++++++
T Consensus 387 ~sgaDL-~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~-----~~-~~~~----~~~~vA~hEaGhA~v~~~l 455 (638)
T CHL00176 387 FSGADL-ANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGT-----PL-EDSK----NKRLIAYHEVGHAIVGTLL 455 (638)
T ss_pred CCHHHH-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccC-----cc-ccHH----HHHHHHHHhhhhHHHHhhc
Confidence 567888 677777777777666666667777766 4444443322 11 1222 2678999999999999999
Q ss_pred CCCCcceeEeeecCCCCcccceeeccccc-cccChHhhhcchHHhhhcccCC--------------cchHHhhHHHHHHH
Q psy10020 512 PHTDALLKVTIVPRTSLALGFAQYTPSEQ-KLYNKEETLDPKKEMTVNREQP--------------PSHDKKKRKCLTEI 576 (640)
Q Consensus 512 ~~~~~v~k~TiipRg~~alG~~~~~p~~~-~~~t~~~~~~~i~~~~~~r~~~--------------~~~~~~~r~~l~~l 576 (640)
+..++|+|+||+|||+ ++||+++.|+++ +++++.+++++|.+++|||++| .++..++..+..||
T Consensus 456 ~~~~~v~kvtI~prg~-~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv 534 (638)
T CHL00176 456 PNHDPVQKVTLIPRGQ-AKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMV 534 (638)
T ss_pred cCCCceEEEEEeecCC-CCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHH
Confidence 9999999999999995 999999999765 6999999999999999999888 56778899999999
Q ss_pred HHHhHh
Q psy10020 577 SVTTMV 582 (640)
Q Consensus 577 ~~~ll~ 582 (640)
++++|.
T Consensus 535 ~~~Gm~ 540 (638)
T CHL00176 535 TRFGMS 540 (638)
T ss_pred HHhCCC
Confidence 999996
No 39
>KOG0740|consensus
Probab=99.88 E-value=5.3e-23 Score=219.59 Aligned_cols=187 Identities=22% Similarity=0.261 Sum_probs=152.4
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
..+..+.+|..+- .+.+|+||+||||+|||.|+++||.+.+..|+.++.+.+.+.|+|+.++.++.+|. .||+++
T Consensus 171 ~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvi 249 (428)
T KOG0740|consen 171 LPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVI 249 (428)
T ss_pred hcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEE
Confidence 3345567777753 56778999999999999999999999999999999999999999999999999997 899999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
|+||+|.+...|+..++ ... .+..+
T Consensus 250 fidEidslls~Rs~~e~---------------------e~s----------------------------------rr~kt 274 (428)
T KOG0740|consen 250 FIDEIDSLLSKRSDNEH---------------------ESS----------------------------------RRLKT 274 (428)
T ss_pred EechhHHHHhhcCCccc---------------------ccc----------------------------------hhhhh
Confidence 99999999988852111 111 23444
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHHH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETIL 236 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~l 236 (640)
+||..+++... +..+.|+| |||||+|+.+|.|++| .++|++|+.+-+..++
T Consensus 275 ----------------------efLiq~~~~~s--~~~drvlv-igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~ 329 (428)
T KOG0740|consen 275 ----------------------EFLLQFDGKNS--APDDRVLV-IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLW 329 (428)
T ss_pred ----------------------HHHhhhccccC--CCCCeEEE-EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHH
Confidence 78888888776 44668999 9999999999999999 8999999977777777
Q ss_pred HhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhh
Q psy10020 237 LKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSH 290 (640)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~ 290 (640)
..-+.. +.+.-.+.|++.||+.|+||||+||..+|.
T Consensus 330 ~~ll~~------------------~~~~l~~~d~~~l~~~Tegysgsdi~~l~k 365 (428)
T KOG0740|consen 330 KQLLKE------------------QPNGLSDLDISLLAKVTEGYSGSDITALCK 365 (428)
T ss_pred HHHHHh------------------CCCCccHHHHHHHHHHhcCcccccHHHHHH
Confidence 222332 111224689999999999999999999999
No 40
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.86 E-value=8e-22 Score=217.86 Aligned_cols=180 Identities=27% Similarity=0.356 Sum_probs=137.6
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCC----------eEEecCchhhhhhccchhhhHhhhhh-
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVP----------FLSMNGSEFIEMIGGLGAARVRTEVV- 74 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~----------~i~v~~~~l~~~~~~~~~~~l~~~f~- 74 (640)
++.++..|..+++..|+|+||+||||||||++++++|..++.+ ++.+.+..+...+.++.+..++.+|.
T Consensus 201 p~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~ 280 (512)
T TIGR03689 201 PFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQR 280 (512)
T ss_pred HhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999976543 45666777777888888888888877
Q ss_pred -------hcccccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhH
Q psy10020 75 -------FLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIK 147 (640)
Q Consensus 75 -------~~p~il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (640)
..||++||||+|.++..|+.. .+++.+
T Consensus 281 Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---------------------~s~d~e------------------------- 314 (512)
T TIGR03689 281 AREKASDGRPVIVFFDEMDSIFRTRGSG---------------------VSSDVE------------------------- 314 (512)
T ss_pred HHHHhhcCCCceEEEehhhhhhcccCCC---------------------ccchHH-------------------------
Confidence 258999999999999776511 111111
Q ss_pred HHHHHHHHHHHhhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------H
Q psy10020 148 HAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------K 221 (640)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~ 221 (640)
..+++ +||+.||++.. ..+|+| |||||+++.||||++| +
T Consensus 315 --------~~il~----------------------~LL~~LDgl~~----~~~ViV-I~ATN~~d~LDpALlRpGRfD~~ 359 (512)
T TIGR03689 315 --------TTVVP----------------------QLLSELDGVES----LDNVIV-IGASNREDMIDPAILRPGRLDVK 359 (512)
T ss_pred --------HHHHH----------------------HHHHHhccccc----CCceEE-EeccCChhhCCHhhcCccccceE
Confidence 34567 89999999987 788999 9999999999999997 7
Q ss_pred hccCcccHHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhh
Q psy10020 222 QLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSH 290 (640)
Q Consensus 222 i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~ 290 (640)
|+|++|+.+.++.+| +.... ..+.+...+..+.|++++++..+|+
T Consensus 360 I~~~~Pd~e~r~~Il-~~~l~-----------------------~~l~l~~~l~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 360 IRIERPDAEAAADIF-SKYLT-----------------------DSLPLDADLAEFDGDREATAAALIQ 404 (512)
T ss_pred EEeCCCCHHHHHHHH-HHHhh-----------------------ccCCchHHHHHhcCCCHHHHHHHHH
Confidence 999999955444444 22111 0111122234478999999999999
No 41
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.86 E-value=1.9e-21 Score=203.07 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=114.5
Q ss_pred ccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh---------hcccccccc
Q psy10020 13 YQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV---------FLHCRVFLH 83 (640)
Q Consensus 13 l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~---------~~p~il~id 83 (640)
+...++.+|.|++|+||||||||++++++|..++.+++.+++.++.+.|.|+.++.++.+|. .+||+||||
T Consensus 140 l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFID 219 (413)
T PLN00020 140 LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIN 219 (413)
T ss_pred hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEe
Confidence 33467899999999999999999999999999999999999999999999999999999997 259999999
Q ss_pred hhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHh-hhh
Q psy10020 84 EITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCL-RKE 162 (640)
Q Consensus 84 eid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 162 (640)
|+|+++++++..+. ... .+.+ .
T Consensus 220 EIDA~~g~r~~~~~--------------------tv~-----------------------------------~qiV~~-- 242 (413)
T PLN00020 220 DLDAGAGRFGTTQY--------------------TVN-----------------------------------NQMVNG-- 242 (413)
T ss_pred hhhhcCCCCCCCCc--------------------chH-----------------------------------HHHHHH--
Confidence 99999988751110 000 2232 4
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchh--------hhccccceeEEEeeccCCCcccHHHHh----HhccCcccHH
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKS--------ELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNRE 230 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~--------~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~ 230 (640)
.||+.+|+... ......+|+| |+|||+|+.|||+|+| .-.|.+|+.+
T Consensus 243 --------------------tLLnl~D~p~~v~l~G~w~~~~~~~~V~V-IaTTNrpd~LDpALlRpGRfDk~i~lPd~e 301 (413)
T PLN00020 243 --------------------TLMNIADNPTNVSLGGDWREKEEIPRVPI-IVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 301 (413)
T ss_pred --------------------HHHHHhcCCccccccccccccccCCCceE-EEeCCCcccCCHhHcCCCCCCceeCCCCHH
Confidence 67777765311 0123678999 9999999999999999 2256789955
Q ss_pred HHHHHH
Q psy10020 231 IAETIL 236 (640)
Q Consensus 231 i~~~~l 236 (640)
-+..+|
T Consensus 302 ~R~eIL 307 (413)
T PLN00020 302 DRIGVV 307 (413)
T ss_pred HHHHHH
Confidence 444444
No 42
>KOG0732|consensus
Probab=99.83 E-value=8.8e-21 Score=218.63 Aligned_cols=198 Identities=20% Similarity=0.207 Sum_probs=159.7
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCC-----CeEEecCchhhhhhccchhhhHhhhhh----hc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANV-----PFLSMNGSEFIEMIGGLGAARVRTEVV----FL 76 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~-----~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~ 76 (640)
++..|+.|.++++..|+|+|++||||||||+.++++|..+.. .++.-++.++.+.|+|+.+..++.+|. .+
T Consensus 284 PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~q 363 (1080)
T KOG0732|consen 284 PLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQ 363 (1080)
T ss_pred HhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccC
Confidence 356789999999999999999999999999999999996653 355668889999999999999999998 89
Q ss_pred ccccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHH
Q psy10020 77 HCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQE 156 (640)
Q Consensus 77 p~il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (640)
|+|+|+||||-+++.|+...+ ..+ .
T Consensus 364 PSIIffdeIdGlapvrSskqE---------------------qih----------------------------------~ 388 (1080)
T KOG0732|consen 364 PSIIFFDEIDGLAPVRSSKQE---------------------QIH----------------------------------A 388 (1080)
T ss_pred ceEEeccccccccccccchHH---------------------Hhh----------------------------------h
Confidence 999999999999999872211 011 3
Q ss_pred HHhhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHH
Q psy10020 157 QCLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNRE 230 (640)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~ 230 (640)
.++. -||..|||+.+ +..|+| |||||||+.+|||++| .++|++|+.+
T Consensus 389 SIvS----------------------TLLaLmdGlds----RgqVvv-igATnRpda~dpaLRRPgrfdref~f~lp~~~ 441 (1080)
T KOG0732|consen 389 SIVS----------------------TLLALMDGLDS----RGQVVV-IGATNRPDAIDPALRRPGRFDREFYFPLPDVD 441 (1080)
T ss_pred hHHH----------------------HHHHhccCCCC----CCceEE-EcccCCccccchhhcCCcccceeEeeeCCchH
Confidence 4555 79999999999 999999 9999999999999999 8999999944
Q ss_pred HHHHHHH-hhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCc
Q psy10020 231 IAETILL-KNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEK 309 (640)
Q Consensus 231 i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~ 309 (640)
-+..++. ..... . ......-+..||+.|.||-|+|+..+|. ++++.+.++..+
T Consensus 442 ar~~Il~Ihtrkw--------~-----------~~i~~~l~~~la~~t~gy~gaDlkaLCT-------eAal~~~~r~~P 495 (1080)
T KOG0732|consen 442 ARAKILDIHTRKW--------E-----------PPISRELLLWLAEETSGYGGADLKALCT-------EAALIALRRSFP 495 (1080)
T ss_pred HHHHHHHHhccCC--------C-----------CCCCHHHHHHHHHhccccchHHHHHHHH-------HHhhhhhccccC
Confidence 4443330 11111 0 0112344679999999999999999999 999998888766
Q ss_pred cc
Q psy10020 310 EV 311 (640)
Q Consensus 310 ~i 311 (640)
.+
T Consensus 496 q~ 497 (1080)
T KOG0732|consen 496 QI 497 (1080)
T ss_pred ee
Confidence 54
No 43
>KOG0736|consensus
Probab=99.81 E-value=4e-19 Score=196.57 Aligned_cols=342 Identities=14% Similarity=0.117 Sum_probs=210.9
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccccchhhhhccchhh
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFLHEITIFDLETKI 94 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ideid~l~~~r~~ 94 (640)
.+...+||+|+|||||||+++..|..++.+++.+++..+........+.++...|. .+|++||+.++|.|+-.+.+
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 34455889999999999999999999999999999999987777777777888887 78999999999999844431
Q ss_pred hhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHHhhhHHhhhh
Q psy10020 95 IENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHK 174 (640)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (640)
+.+-+- .+.++
T Consensus 509 ----------------------ged~rl---------------------------------~~~i~-------------- 519 (953)
T KOG0736|consen 509 ----------------------GEDARL---------------------------------LKVIR-------------- 519 (953)
T ss_pred ----------------------chhHHH---------------------------------HHHHH--------------
Confidence 111110 12222
Q ss_pred ccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCccc----HHHHHHHHHhhhhhh---
Q psy10020 175 KELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVN----REIAETILLKNFAHQ--- 243 (640)
Q Consensus 175 ~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~----~~i~~~~l~~~~~~~--- 243 (640)
.++. .+.+.. +.++++| |++|++.+.+++.+.+ .|.++.|+ .+|++.|+ ......
T Consensus 520 --------~~ls-~e~~~~---~~~~~iv-v~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~-~~~~~n~~v 585 (953)
T KOG0736|consen 520 --------HLLS-NEDFKF---SCPPVIV-VATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYL-NHLPLNQDV 585 (953)
T ss_pred --------HHHh-cccccC---CCCceEE-EEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHH-hccccchHH
Confidence 3332 232321 3788999 9999999999999998 88899999 55666665 222211
Q ss_pred ----hhhh---------ccccccc--------cccc--------cc----------------------------CCCC--
Q psy10020 244 ----LIVK---------CPLMMTY--------SSEE--------GR----------------------------NLNI-- 264 (640)
Q Consensus 244 ----~~~~---------~~~~~~~--------~~~~--------~~----------------------------~~~~-- 264 (640)
+..+ ..+.... .... .. .+.-
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPK 665 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPK 665 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCC
Confidence 0000 0000000 0000 00 0000
Q ss_pred cchhcHHHHHhh---------------------CCC----------------------------------CCccchhhhh
Q psy10020 265 PASFKMMKKQNF---------------------LPQ----------------------------------TSTASNVNQS 289 (640)
Q Consensus 265 ~~~~~~~~LA~~---------------------t~G----------------------------------~sgadi~~l~ 289 (640)
-+.+.|+++.-. +.| +-|-|+-++|
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY 745 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY 745 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHH
Confidence 123333322210 011 4578899999
Q ss_pred hcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccc--cccchhccccccc
Q psy10020 290 HNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFAS--LVCRQVAFHESGH 367 (640)
Q Consensus 290 ~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~--~~~~~vA~hEaGH 367 (640)
+|-.-+.||..|..||..+|||||.|+| |++.=-.+.....-.++. -.|.|||+|+||.+. ...+.|
T Consensus 746 VGqSE~NVR~VFerAR~A~PCVIFFDEL---DSlAP~RG~sGDSGGVMD-RVVSQLLAELDgls~~~s~~VFV------- 814 (953)
T KOG0736|consen 746 VGQSEENVREVFERARSAAPCVIFFDEL---DSLAPNRGRSGDSGGVMD-RVVSQLLAELDGLSDSSSQDVFV------- 814 (953)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEeccc---cccCccCCCCCCccccHH-HHHHHHHHHhhcccCCCCCceEE-------
Confidence 9999999999999999999999999999 554322222111122333 245599999999984 444444
Q ss_pred hhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec-------cccchhhhhH
Q psy10020 368 ALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS-------SLLTVNKFAS 440 (640)
Q Consensus 368 al~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g-------~~ttGA~l~~ 440 (640)
..++||+|-+|++++||| +| .--+|+-.......+..++..++..+ +.-|++.+- .-.||||+=+
T Consensus 815 ---iGATNRPDLLDpALLRPG-RF--DKLvyvG~~~d~esk~~vL~AlTrkF--kLdedVdL~eiAk~cp~~~TGADlYs 886 (953)
T KOG0736|consen 815 ---IGATNRPDLLDPALLRPG-RF--DKLVYVGPNEDAESKLRVLEALTRKF--KLDEDVDLVEIAKKCPPNMTGADLYS 886 (953)
T ss_pred ---EecCCCccccChhhcCCC-cc--ceeEEecCCccHHHHHHHHHHHHHHc--cCCCCcCHHHHHhhCCcCCchhHHHH
Confidence 445699999999999997 33 33455544333345555555555533 233444442 2368998733
Q ss_pred --HHHHHHHHHHhchhhhcccCCC
Q psy10020 441 --LVCRQVAFHESGHALVGWLLPH 462 (640)
Q Consensus 441 --n~~~~~A~~e~gha~~~~~~~~ 462 (640)
.-|-..|+.+--|.+..-.+.+
T Consensus 887 LCSdA~l~AikR~i~~ie~g~~~~ 910 (953)
T KOG0736|consen 887 LCSDAMLAAIKRTIHDIESGTISE 910 (953)
T ss_pred HHHHHHHHHHHHHHHHhhhccccc
Confidence 2333344444434433333333
No 44
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=99.81 E-value=5.4e-21 Score=190.96 Aligned_cols=119 Identities=29% Similarity=0.387 Sum_probs=98.4
Q ss_pred cccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCc
Q psy10020 313 LRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLA 392 (640)
Q Consensus 313 ~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~ 392 (640)
|++|| ++|++++..|..++++.++ ..+++++||||+||||++++++..+++.+++|+|+|. .
T Consensus 1 ~~~d~--~~a~drv~~G~~~~~~~~~---------------~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~-~ 62 (213)
T PF01434_consen 1 TMEDI--EEAIDRVLMGPEKKSRKLS---------------EEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGS-A 62 (213)
T ss_dssp -HHHH--HHHHHHHHCCSCCTTS------------------HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCC-C
T ss_pred CHHHH--HHHHHHHhcCcCcCCCCCC---------------HHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCC-c
Confidence 46788 9999999999998777777 8899999999999999999999889999999999977 9
Q ss_pred cceEEEcCCcc-ccCCHHHHhhhhhhhccccccceEEec--cccchhhhhHHHHHHHHHH
Q psy10020 393 LGFAQYTPSEQ-KLYNKEEIFSPIDTSRSHRVLRKWVLS--SLLTVNKFASLVCRQVAFH 449 (640)
Q Consensus 393 ~g~~~~l~~~~-~~~t~~~l~~~i~~~l~G~aAE~ii~g--~~ttGA~l~~n~~~~~A~~ 449 (640)
+|++.+.|.+. ...++.++++.|+++|+|+|||+++|| .+++|+.-+-..|+..|.+
T Consensus 63 ~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~ 122 (213)
T PF01434_consen 63 LGFTQFTPDEDRYIRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARK 122 (213)
T ss_dssp CHCCEECHHTT-SS-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHH
T ss_pred ceeEEeccchhcccccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHH
Confidence 99999988754 579999999999999999999999999 8999987655666666644
No 45
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.77 E-value=4.1e-19 Score=199.21 Aligned_cols=275 Identities=18% Similarity=0.213 Sum_probs=192.4
Q ss_pred CCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccc
Q psy10020 279 QTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCR 358 (640)
Q Consensus 279 G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~ 358 (640)
-++++++...+.|.+.+.++..|..++...++|+++||+ +++...............+.+++|+|.+||+|....++
T Consensus 118 ~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEi---d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 118 SISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEI---DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred eccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEech---hhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 356778888888999999999999999999999999999 44432211100011112235678999999999876665
Q ss_pred hhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEe---c---cc
Q psy10020 359 QVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVL---S---SL 432 (640)
Q Consensus 359 ~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~---g---~~ 432 (640)
++ |+ ++|+++.+|++.++|+ +++..+.+.+|+. ..|.+++..+.... ....++.+ . ..
T Consensus 195 ~v--------I~--aTn~~~~ld~al~r~g-Rfd~~i~i~~Pd~---~~R~~il~~~l~~~--~~~~~~~l~~la~~t~G 258 (495)
T TIGR01241 195 IV--------IA--ATNRPDVLDPALLRPG-RFDRQVVVDLPDI---KGREEILKVHAKNK--KLAPDVDLKAVARRTPG 258 (495)
T ss_pred EE--------EE--ecCChhhcCHHHhcCC-cceEEEEcCCCCH---HHHHHHHHHHHhcC--CCCcchhHHHHHHhCCC
Confidence 44 44 4588999999999996 5555444444442 23445444432211 11122222 1 23
Q ss_pred cchhhhhHHHHHHHHHHHhchhhhcccCCCCccc-ceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhC
Q psy10020 433 LTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL-LKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLL 511 (640)
Q Consensus 433 ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v-~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~ 511 (640)
.+|+++ .+.++.+++.+.++....+...+.+.+ +++..++... .....++ .++.++|||+|||++++++
T Consensus 259 ~sgadl-~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~-----~~~~~~~----~~~~~A~hEaGhAlv~~~l 328 (495)
T TIGR01241 259 FSGADL-ANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKK-----SRVISEK----EKKLVAYHEAGHALVGLLL 328 (495)
T ss_pred CCHHHH-HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccc-----cccccHH----HHHHHHHHHHhHHHHHHhc
Confidence 567888 566777766665555445555566554 4554543221 0111212 2678999999999999999
Q ss_pred CCCCcceeEeeecCCCCcccceeeccccc-cccChHhhhcchHHhhhcccCC------------cchHHhhHHHHHHHHH
Q psy10020 512 PHTDALLKVTIVPRTSLALGFAQYTPSEQ-KLYNKEETLDPKKEMTVNREQP------------PSHDKKKRKCLTEISV 578 (640)
Q Consensus 512 ~~~~~v~k~TiipRg~~alG~~~~~p~~~-~~~t~~~~~~~i~~~~~~r~~~------------~~~~~~~r~~l~~l~~ 578 (640)
+...+++++||.|||. ++||+.+.|+++ ...|+.++++++.++++||++| .++..+++.+..++.+
T Consensus 329 ~~~~~v~~vsi~prg~-~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~Dl~~At~lA~~mv~~ 407 (495)
T TIGR01241 329 KDADPVHKVTIIPRGQ-ALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNIARAMVTE 407 (495)
T ss_pred CCCCceEEEEEeecCC-ccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999995 999999998764 6899999999999999999888 6777889999999999
Q ss_pred HhHhH
Q psy10020 579 TTMVL 583 (640)
Q Consensus 579 ~ll~~ 583 (640)
++|..
T Consensus 408 ~Gm~~ 412 (495)
T TIGR01241 408 WGMSD 412 (495)
T ss_pred hCCCc
Confidence 99965
No 46
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.75 E-value=1.4e-18 Score=208.20 Aligned_cols=257 Identities=9% Similarity=-0.034 Sum_probs=173.6
Q ss_pred hhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccc
Q psy10020 288 QSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGH 367 (640)
Q Consensus 288 l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGH 367 (640)
+..++++.+++..|..|++.+||||++++| ++++.- +.+ +.+++|||++|||+..... ...
T Consensus 1712 m~~~e~~~rIr~lFelARk~SPCIIFIDEI---DaL~~~----ds~-----~ltL~qLLneLDg~~~~~s-------~~~ 1772 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKAMSPCIIWIPNI---HDLNVN----ESN-----YLSLGLLVNSLSRDCERCS-------TRN 1772 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHHCCCeEEEEEch---hhcCCC----ccc-----eehHHHHHHHhccccccCC-------CCC
Confidence 567888899999999999999999999999 666532 222 2346699999999853210 112
Q ss_pred hhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhcccc-ccce-EE---ecc---ccchhhhh
Q psy10020 368 ALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHR-VLRK-WV---LSS---LLTVNKFA 439 (640)
Q Consensus 368 al~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~-aAE~-ii---~g~---~ttGA~l~ 439 (640)
.++.++||++|.+|+|++||| +++.-+.+.+|+. ..|.+.+..+.. ..|. ..++ +. ++. +.+|||+
T Consensus 1773 VIVIAATNRPD~LDPALLRPG-RFDR~I~Ir~Pd~---p~R~kiL~ILl~-tkg~~L~~~~vdl~~LA~~T~GfSGADL- 1846 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPN-KLNTCIKIRRLLI---PQQRKHFFTLSY-TRGFHLEKKMFHTNGFGSITMGSNARDL- 1846 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCC-CCCeEEEeCCCCc---hhHHHHHHHHHh-hcCCCCCcccccHHHHHHhCCCCCHHHH-
Confidence 255667799999999999996 6665555555542 234443332111 1111 1111 11 232 4577888
Q ss_pred HHHHHHHHHHHhchhhhcccCCCCccc-ceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCCCCCcce
Q psy10020 440 SLVCRQVAFHESGHALVGWLLPHTDAL-LKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLPHTDALL 518 (640)
Q Consensus 440 ~n~~~~~A~~e~gha~~~~~~~~~e~v-~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~~~~~v~ 518 (640)
.+++++||+.+..+....+.+.+.+.+ ++++.+++.+ +.... .+.+++||+|||+++.++...++++
T Consensus 1847 anLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~-------~~~~~-----~~~ia~yEiGhAvvq~~L~~~~pv~ 1914 (2281)
T CHL00206 1847 VALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ-------VRSVQ-----DHGILFYQIGRAVAQNVLLSNCPID 1914 (2281)
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhc-------ccCcc-----hhhhhhhHHhHHHHHHhccCCCCcc
Confidence 677777777777777666777767666 6665543321 11111 2247999999999999999999999
Q ss_pred eEeeec-----CCCCcccceeeccccccccChHhhhcchHHhhhcccCCcchHHhhHHHHHHHHHHhHh
Q psy10020 519 KVTIVP-----RTSLALGFAQYTPSEQKLYNKEETLDPKKEMTVNREQPPSHDKKKRKCLTEISVTTMV 582 (640)
Q Consensus 519 k~Tiip-----Rg~~alG~~~~~p~~~~~~t~~~~~~~i~~~~~~r~~~~~~~~~~r~~l~~l~~~ll~ 582 (640)
++||+| |++.++||++|.|.+ +++++.+++.+|.+|+|||+|+...-..-..+..+|+.++|.
T Consensus 1915 kISIy~~~~~~r~~~~yl~~wyle~~-~~mkk~tiL~~Il~cLAGraAedlwf~~~~~~~n~It~yg~v 1982 (2281)
T CHL00206 1915 PISIYMKKKSCKEGDSYLYKWYFELG-TSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLV 1982 (2281)
T ss_pred eEEEecCCccccCcccceeEeecCCc-ccCCHHHHHHHHHHHhhhhhhhhhccCcchhhhcCcccccch
Confidence 999964 233478999999877 899999999999999999999943333333344455555443
No 47
>KOG0735|consensus
Probab=99.74 E-value=1.9e-17 Score=181.90 Aligned_cols=312 Identities=15% Similarity=0.043 Sum_probs=188.9
Q ss_pred CceEEEcCCCchHHHHHHHHHhccC----CCeEEecCchhhhhhccchhhhHhhhhh----hcccccccchhhhhccchh
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEAN----VPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFLHEITIFDLETK 93 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~----~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ideid~l~~~r~ 93 (640)
..++|.||+|||||.|+++|+..+. .++..++|+.+.........+.+..+|. ++|+++++|++|.++...+
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 3488999999999999999999554 4556778887764444444445555655 8999999999999996221
Q ss_pred hhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHHhhhHHhhh
Q psy10020 94 IIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRH 173 (640)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (640)
.++ + ..+.. ...++
T Consensus 512 -~e~------------~------q~~~~----------------------------------~~rla------------- 525 (952)
T KOG0735|consen 512 -NEN------------G------QDGVV----------------------------------SERLA------------- 525 (952)
T ss_pred -ccC------------C------cchHH----------------------------------HHHHH-------------
Confidence 111 0 00111 12222
Q ss_pred hccchhhhhhHhhhc-ccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHHHHhhhhhhhhh
Q psy10020 174 KKELDLERQILLHEI-TKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETILLKNFAHQLIV 246 (640)
Q Consensus 174 ~~~~~~~~~~lL~~l-d~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~l~~~~~~~~~~ 246 (640)
.||+.+ +-+. +.+..+.| |++.+....|+|-|.. ++.++.|+.+.++.+| ..+....
T Consensus 526 ---------~flnqvi~~y~---~~~~~ia~-Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL-~~~~s~~-- 589 (952)
T KOG0735|consen 526 ---------AFLNQVIKIYL---KRNRKIAV-IATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEIL-TTIFSKN-- 589 (952)
T ss_pred ---------HHHHHHHHHHH---ccCcEEEE-EEechhhhhcChhhcCccceEEEEecCCcchhHHHHHH-HHHHHhh--
Confidence 344332 2222 23556788 9999999999999888 7788888844444444 2222100
Q ss_pred hcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhh------------------------------------
Q psy10020 247 KCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSH------------------------------------ 290 (640)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~------------------------------------ 290 (640)
+.+ ....+ ++.++..|+||...|++.++.
T Consensus 590 ---~~~----------~~~~d--Ld~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR 654 (952)
T KOG0735|consen 590 ---LSD----------ITMDD--LDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALR 654 (952)
T ss_pred ---hhh----------hhhHH--HHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhh
Confidence 000 00112 333666677766666665544
Q ss_pred --------------------------------------------------------------------------------
Q psy10020 291 -------------------------------------------------------------------------------- 290 (640)
Q Consensus 291 -------------------------------------------------------------------------------- 290 (640)
T Consensus 655 ~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKG 734 (952)
T KOG0735|consen 655 GIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKG 734 (952)
T ss_pred hccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecC
Confidence
Q ss_pred --------cchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhcc
Q psy10020 291 --------NIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAF 362 (640)
Q Consensus 291 --------~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~ 362 (640)
|...+.||..|..|+..+|||.+.++| +.+.+.+..-+--++...+||+|++|||-+..+++.|
T Consensus 735 PElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEf------dSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i-- 806 (952)
T KOG0735|consen 735 PELLSKYIGASEQNVRDLFERAQSAKPCILFFDEF------DSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI-- 806 (952)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccc------cccCcccCCCCCCchHHHHHHHHHhhccccccceEEE--
Confidence 222333333344455557788888888 4443433333333444578899999999999888876
Q ss_pred ccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec------cccchh
Q psy10020 363 HESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS------SLLTVN 436 (640)
Q Consensus 363 hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g------~~ttGA 436 (640)
++|+ .|+|-+|+|++||| +.+.-.--.+|+++ .|-+++..++..+ ..++.+.|. +..+||
T Consensus 807 ------~aaT--sRpdliDpALLRpG-RlD~~v~C~~P~~~---eRl~il~~ls~s~--~~~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 807 ------LAAT--SRPDLIDPALLRPG-RLDKLVYCPLPDEP---ERLEILQVLSNSL--LKDTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred ------EEec--CCccccCHhhcCCC-ccceeeeCCCCCcH---HHHHHHHHHhhcc--CCccccchHHHhhhcCCCchh
Confidence 5555 79999999999997 43333323344432 3455555544422 123344442 356889
Q ss_pred hhhH--HHHHHHHHHHhc
Q psy10020 437 KFAS--LVCRQVAFHESG 452 (640)
Q Consensus 437 ~l~~--n~~~~~A~~e~g 452 (640)
|+.. --|..+|+|+.-
T Consensus 873 Dlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 873 DLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 9865 346667777753
No 48
>KOG0743|consensus
Probab=99.67 E-value=5.6e-17 Score=172.42 Aligned_cols=159 Identities=20% Similarity=0.224 Sum_probs=119.3
Q ss_pred cccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh--hcccc
Q psy10020 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV--FLHCR 79 (640)
Q Consensus 2 eiv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--~~p~i 79 (640)
++..|.+....|+.+|....+|.||+||||||||+++-+||+.++..++.++.+.+.. ... ++.++. ...+|
T Consensus 216 Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-----n~d-Lr~LL~~t~~kSI 289 (457)
T KOG0743|consen 216 DLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-----DSD-LRHLLLATPNKSI 289 (457)
T ss_pred HHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----cHH-HHHHHHhCCCCcE
Confidence 4567888899999999999999999999999999999999999999999988776542 122 555555 55589
Q ss_pred cccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHh
Q psy10020 80 VFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCL 159 (640)
Q Consensus 80 l~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (640)
|+|++||+-...+.....- ..... + ....-++
T Consensus 290 ivIEDIDcs~~l~~~~~~~------------------~~~~~------------~------------------~~~~VTl 321 (457)
T KOG0743|consen 290 LLIEDIDCSFDLRERRKKK------------------KENFE------------G------------------DLSRVTL 321 (457)
T ss_pred EEEeecccccccccccccc------------------ccccc------------C------------------Ccceeeh
Confidence 9999999876544311110 00000 0 0001233
Q ss_pred hhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhcccc--ceeEEEeeccCCCcccHHHHh------HhccCcccHHH
Q psy10020 160 RKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRE--LHIVKMETQLRAYESDKKLAR------KQLIDSVNREI 231 (640)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~--~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i 231 (640)
+ +||+.+||+.+ .+ -.|+ |.|||+++.|||||+| +|+++..+-+.
T Consensus 322 S----------------------GLLNfiDGlwS----scg~ERIi-vFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~ 374 (457)
T KOG0743|consen 322 S----------------------GLLNFLDGLWS----SCGDERII-VFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEA 374 (457)
T ss_pred H----------------------Hhhhhhccccc----cCCCceEE-EEecCChhhcCHhhcCCCcceeEEEcCCCCHHH
Confidence 4 99999999998 44 5566 8999999999999999 99999999888
Q ss_pred HHHHHHhhhhh
Q psy10020 232 AETILLKNFAH 242 (640)
Q Consensus 232 ~~~~l~~~~~~ 242 (640)
|+.++ +++-.
T Consensus 375 fK~La-~nYL~ 384 (457)
T KOG0743|consen 375 FKTLA-SNYLG 384 (457)
T ss_pred HHHHH-HHhcC
Confidence 88887 55543
No 49
>KOG0744|consensus
Probab=99.62 E-value=1e-15 Score=155.45 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=129.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccC---------CCeEEecCchhhhhhccchhhhHhhhhh-------hcc--ccccc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEAN---------VPFLSMNGSEFIEMIGGLGAARVRTEVV-------FLH--CRVFL 82 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~---------~~~i~v~~~~l~~~~~~~~~~~l~~~f~-------~~p--~il~i 82 (640)
.+=+||+||||||||+|+|+||..+. ...+.++...++++|.++..+.+..+|+ ... ..++|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 44478999999999999999999653 3568899999999999999999999998 222 34679
Q ss_pred chhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhh
Q psy10020 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKE 162 (640)
Q Consensus 83 deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (640)
||+++++..|..... ++..++. -+++|
T Consensus 257 DEVESLa~aR~s~~S-----------------~~EpsDa----------------------------------IRvVN-- 283 (423)
T KOG0744|consen 257 DEVESLAAARTSASS-----------------RNEPSDA----------------------------------IRVVN-- 283 (423)
T ss_pred HHHHHHHHHHHhhhc-----------------CCCCchH----------------------------------HHHHH--
Confidence 999999988852211 0112222 46888
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHHHHh
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETILLK 238 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~l~~ 238 (640)
.+|++||.++. .++|++ .+|+|-.+.||.||+. +.+|+.|+.+.+..++..
T Consensus 284 --------------------alLTQlDrlK~----~~Nvli-L~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilks 338 (423)
T KOG0744|consen 284 --------------------ALLTQLDRLKR----YPNVLI-LATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKS 338 (423)
T ss_pred --------------------HHHHHHHHhcc----CCCEEE-EeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHH
Confidence 89999999999 999999 9999999999999998 899999994433333312
Q ss_pred hhhhhhhhhcccccccccccccCCCCc-----chhcHHHHHhh-CCCCCccchhhhhh
Q psy10020 239 NFAHQLIVKCPLMMTYSSEEGRNLNIP-----ASFKMMKKQNF-LPQTSTASNVNQSH 290 (640)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~LA~~-t~G~sgadi~~l~~ 290 (640)
.+.+ ++.. ...-... +...++ .+.....+++. +.|.||+-|..+--
T Consensus 339 cieE-L~~~-gIi~~~~----~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~ 390 (423)
T KOG0744|consen 339 CIEE-LISS-GIILFHQ----RSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPL 390 (423)
T ss_pred HHHH-HHhc-Ceeeeec----cchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhH
Confidence 2222 2221 1110000 011111 22233344444 48999999988766
No 50
>KOG0742|consensus
Probab=99.62 E-value=1.1e-15 Score=159.12 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=128.8
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh-----hcccccccchhhhhccchh
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV-----FLHCRVFLHEITIFDLETK 93 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~-----~~p~il~ideid~l~~~r~ 93 (640)
.+-+++++|||||||||+++|.||...|..+-...+.++.... .+....+..+|. ...-++||||.|+|...|.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG-~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG-AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc-hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 3456699999999999999999999999888888888775321 234456778887 3446899999999998776
Q ss_pred hhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHHhhhHHhhh
Q psy10020 94 IIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRH 173 (640)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (640)
...| +. ++...+|
T Consensus 461 --------------ktym-----SE-----------------------------------aqRsaLN------------- 473 (630)
T KOG0742|consen 461 --------------KTYM-----SE-----------------------------------AQRSALN------------- 473 (630)
T ss_pred --------------hhhh-----cH-----------------------------------HHHHHHH-------------
Confidence 1121 11 1245666
Q ss_pred hccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCccc----HHHHHHHHHhhhhhhhh
Q psy10020 174 KKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVN----REIAETILLKNFAHQLI 245 (640)
Q Consensus 174 ~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~----~~i~~~~l~~~~~~~~~ 245 (640)
.||-.- | ..+..+++ +-+||+|..+|.|+.. .++|+||. ..++..||.+.+..-..
T Consensus 474 ---------AlLfRT-G-----dqSrdivL-vlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 474 ---------ALLFRT-G-----DQSRDIVL-VLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred ---------HHHHHh-c-----ccccceEE-EeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 444221 1 11345555 7899999999999988 99999999 33455555222211111
Q ss_pred h-hcccccccccccccCCCCcc---hhcHHHHHhhCCCCCccchhhhhhcchHHHH
Q psy10020 246 V-KCPLMMTYSSEEGRNLNIPA---SFKMMKKQNFLPQTSTASNVNQSHNIPQEIY 297 (640)
Q Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~---~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~ 297 (640)
. ...+...+-+.+.+.+.+.. +--....|..|+||||.+|..|+.||-|.++
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavY 593 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVY 593 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Confidence 1 12223333333444454442 2335688999999999999999996655444
No 51
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.3e-14 Score=158.16 Aligned_cols=338 Identities=20% Similarity=0.197 Sum_probs=213.6
Q ss_pred ccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccccc
Q psy10020 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFL 82 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~i 82 (640)
+..+..++.++...++|++++||+|+|||++++.++.. ...+..+++..+...+.+......+..|. .+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677889999999999999999999999999999998 55557778888888888888888888877 77899999
Q ss_pred chhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhh
Q psy10020 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKE 162 (640)
Q Consensus 83 deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (640)
|+++.+.+.+.... ...+ ...++
T Consensus 83 d~~~~~~~~~~~~~----------------------~~~~---------------------------------~~v~~-- 105 (494)
T COG0464 83 DEIDALAPKRSSDQ----------------------GEVE---------------------------------RRVVA-- 105 (494)
T ss_pred chhhhcccCccccc----------------------cchh---------------------------------hHHHH--
Confidence 99999998887200 0110 34455
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccH----HHH
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNR----EIA 232 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~----~i~ 232 (640)
+++..+|++.. .. +++ ++.||++..+|+++.+ .+.+..|+. +|.
T Consensus 106 --------------------~l~~~~d~~~~----~~-v~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 106 --------------------QLLALMDGLKR----GQ-VIV-IGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred --------------------HHHHhcccccC----Cc-eEE-EeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 77788888774 56 888 9999999999999999 788888883 333
Q ss_pred HHHHHhhhhhh----------------------hhhhcccc--ccc----cccc---------------c-cCC-CCcch
Q psy10020 233 ETILLKNFAHQ----------------------LIVKCPLM--MTY----SSEE---------------G-RNL-NIPAS 267 (640)
Q Consensus 233 ~~~l~~~~~~~----------------------~~~~~~~~--~~~----~~~~---------------~-~~~-~~~~~ 267 (640)
..+. ..+... +....... ... .... + ..+ ...+.
T Consensus 160 ~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (494)
T COG0464 160 QIHT-RLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDED 238 (494)
T ss_pred HHHH-hcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccCCCC
Confidence 3332 111110 00000000 000 0000 0 000 00111
Q ss_pred hcHHHH----------------------------------------------------HhhCC----CCCccchhhhhhc
Q psy10020 268 FKMMKK----------------------------------------------------QNFLP----QTSTASNVNQSHN 291 (640)
Q Consensus 268 ~~~~~L----------------------------------------------------A~~t~----G~sgadi~~l~~~ 291 (640)
+.|..+ |..+. .+.++++...+.|
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vG 318 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVG 318 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccc
Confidence 122111 11110 1455577777777
Q ss_pred chHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhh
Q psy10020 292 IPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVG 371 (640)
Q Consensus 292 ~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a 371 (640)
-..+.++..|..|++.+++||+++++ +++. ...........+..++|+|.+|||.+....+. +.
T Consensus 319 esek~ir~~F~~A~~~~p~iiFiDEi---Ds~~---~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~----------vi 382 (494)
T COG0464 319 ESEKNIRELFEKARKLAPSIIFIDEI---DSLA---SGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL----------VI 382 (494)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEch---hhhh---ccCCCCCchHHHHHHHHHHHHhcCCCccCceE----------EE
Confidence 77888888899999999999999999 4433 33333222222455679999999999888754 44
Q ss_pred cccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec------cccchhhhhHHHHHH
Q psy10020 372 WLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS------SLLTVNKFASLVCRQ 445 (640)
Q Consensus 372 ~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g------~~ttGA~l~~n~~~~ 445 (640)
.++|+++.+|++.+||+ +++.-+.+.+|+. ..|..++..+.....-..++++.+. +..+|+++ .++++.
T Consensus 383 ~aTN~p~~ld~a~lR~g-Rfd~~i~v~~pd~---~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi-~~i~~e 457 (494)
T COG0464 383 AATNRPDDLDPALLRPG-RFDRLIYVPLPDL---EERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADI-AALVRE 457 (494)
T ss_pred ecCCCccccCHhhcccC-ccceEeecCCCCH---HHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHH-HHHHHH
Confidence 55688999999999995 6665555555542 2233333332221111122333332 23678888 444444
Q ss_pred HHHHH
Q psy10020 446 VAFHE 450 (640)
Q Consensus 446 ~A~~e 450 (640)
+++.+
T Consensus 458 a~~~~ 462 (494)
T COG0464 458 AALEA 462 (494)
T ss_pred HHHHH
Confidence 44433
No 52
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.55 E-value=9.9e-15 Score=133.42 Aligned_cols=115 Identities=30% Similarity=0.406 Sum_probs=91.5
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hc-ccccccchhhhhccchhhhhhh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FL-HCRVFLHEITIFDLETKIIENI 98 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~-p~il~ideid~l~~~r~~~~~~ 98 (640)
++|+||||||||++++.+|..++.+++.+++..+...+.+.....+..+|. .. |+++++||+|.+...... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~--~- 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQP--S- 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCST--S-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccc--c-
Confidence 589999999999999999999999999999999886666777777777776 45 899999999999966520 0
Q ss_pred hhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHHhhhHHhhhhccch
Q psy10020 99 FDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELD 178 (640)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (640)
.+... ...++
T Consensus 78 ------------------~~~~~----------------------------------~~~~~------------------ 87 (132)
T PF00004_consen 78 ------------------SSSFE----------------------------------QRLLN------------------ 87 (132)
T ss_dssp ------------------SSHHH----------------------------------HHHHH------------------
T ss_pred ------------------ccccc----------------------------------ccccc------------------
Confidence 11111 34455
Q ss_pred hhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHH
Q psy10020 179 LERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLA 219 (640)
Q Consensus 179 ~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~ 219 (640)
.|+..++.... ....++| |+|||+++.+|++++
T Consensus 88 ----~L~~~l~~~~~---~~~~~~v-I~ttn~~~~i~~~l~ 120 (132)
T PF00004_consen 88 ----QLLSLLDNPSS---KNSRVIV-IATTNSPDKIDPALL 120 (132)
T ss_dssp ----HHHHHHHTTTT---TSSSEEE-EEEESSGGGSCHHHH
T ss_pred ----eeeeccccccc---cccccee-EEeeCChhhCCHhHH
Confidence 67777777665 1356899 999999999999999
No 53
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.9e-15 Score=153.74 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=133.5
Q ss_pred HHHHhhCCC----CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCC-CCCCccchhhhHhhhhh
Q psy10020 271 MKKQNFLPQ----TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSP-IDTSRSHRVLRKWVLSS 345 (640)
Q Consensus 271 ~~LA~~t~G----~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~-g~~~~~~~~~~~~~~ql 345 (640)
..+|.+|.. ++|++|.+.|.|-|++.|+.+|..||+.+|+|||+++| ||+..-.- .....+.-+. -|+.||
T Consensus 203 kAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEI---DAIg~kR~d~~t~gDrEVQ-RTmleL 278 (406)
T COG1222 203 KAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEI---DAIGAKRFDSGTSGDREVQ-RTMLEL 278 (406)
T ss_pred HHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEech---hhhhcccccCCCCchHHHH-HHHHHH
Confidence 467777764 89999999999999999999999999999999999999 77754321 1112222333 367799
Q ss_pred hcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccc
Q psy10020 346 LLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLR 425 (640)
Q Consensus 346 L~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE 425 (640)
|++||||.+...+-| |+| |||+|.||+|++||| ++++-..+.+|+. .+|..++.-|+..| ..++
T Consensus 279 L~qlDGFD~~~nvKV--------I~A--TNR~D~LDPALLRPG-R~DRkIEfplPd~---~gR~~Il~IHtrkM--~l~~ 342 (406)
T COG1222 279 LNQLDGFDPRGNVKV--------IMA--TNRPDILDPALLRPG-RFDRKIEFPLPDE---EGRAEILKIHTRKM--NLAD 342 (406)
T ss_pred HHhccCCCCCCCeEE--------EEe--cCCccccChhhcCCC-cccceeecCCCCH---HHHHHHHHHHhhhc--cCcc
Confidence 999999998776655 544 599999999999996 7777777777664 46888998888877 5778
Q ss_pred eEEec------cccchhhhhHHHHHHHHHHHhchhhhcccCCCCccc-ceE
Q psy10020 426 KWVLS------SLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL-LKV 469 (640)
Q Consensus 426 ~ii~g------~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v-~kv 469 (640)
.+.|. ...+||++ .+++..+.|.+-+.....+.+.|+..+ .||
T Consensus 343 dvd~e~la~~~~g~sGAdl-kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 343 DVDLELLARLTEGFSGADL-KAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred CcCHHHHHHhcCCCchHHH-HHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 88885 34678888 566666655555555566667777655 444
No 54
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=99.33 E-value=3.5e-13 Score=134.73 Aligned_cols=108 Identities=31% Similarity=0.464 Sum_probs=85.7
Q ss_pred cceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccc-cccC
Q psy10020 466 LLKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQ-KLYN 544 (640)
Q Consensus 466 v~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~-~~~t 544 (640)
+++|.++++.. +...++++ ++..||||+|||+++++++..++|.++||+|||. ++||+.+.|+++ +..|
T Consensus 9 ~drv~~G~~~~-----~~~~~~~~----~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~-~~G~~~~~~~~~~~~~t 78 (213)
T PF01434_consen 9 IDRVLMGPEKK-----SRKLSEEE----KRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGS-ALGFTQFTPDEDRYIRT 78 (213)
T ss_dssp HHHHHCCSCCT-----TS---HHH----HHHHHHHHHHHHHHHHHSSS---EEEEESSTTCC-CCHCCEECHHTT-SS-B
T ss_pred HHHHhcCcCcC-----CCCCCHHH----HHHHHHHHHHHHHHHHHhcccccEEEEEEecCCC-cceeEEeccchhccccc
Confidence 36677766542 11223332 7889999999999999999999999999999997 999999999877 5899
Q ss_pred hHhhhcchHHhhhcccCC--------------cchHHhhHHHHHHHHHHhHhH
Q psy10020 545 KEETLDPKKEMTVNREQP--------------PSHDKKKRKCLTEISVTTMVL 583 (640)
Q Consensus 545 ~~~~~~~i~~~~~~r~~~--------------~~~~~~~r~~l~~l~~~ll~~ 583 (640)
+.++.+++.++++||++| .++..+++.+..++.+++|-.
T Consensus 79 ~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~ 131 (213)
T PF01434_consen 79 RSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGD 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TT
T ss_pred HHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999887 677777999999999999964
No 55
>CHL00181 cbbX CbbX; Provisional
Probab=99.27 E-value=2.3e-11 Score=127.01 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=60.6
Q ss_pred ccccccCcccCC-c--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhhhhhccchhhhHhhhhh-hcccc
Q psy10020 11 EYYQNLGAKVPK-G--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFIEMIGGLGAARVRTEVV-FLHCR 79 (640)
Q Consensus 11 ~~l~~l~l~~~~-G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~~~~~~~~~~~l~~~f~-~~p~i 79 (640)
.....+++..+. | ++|+||||||||++++++|..+ ..+++.++..++...+.+......+.+|. ..+++
T Consensus 46 ~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggV 125 (287)
T CHL00181 46 RLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGV 125 (287)
T ss_pred HHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCE
Confidence 344556665543 4 7899999999999999998843 23578888888877777776666666665 45689
Q ss_pred cccchhhhhccc
Q psy10020 80 VFLHEITIFDLE 91 (640)
Q Consensus 80 l~ideid~l~~~ 91 (640)
|||||++.+...
T Consensus 126 LfIDE~~~l~~~ 137 (287)
T CHL00181 126 LFIDEAYYLYKP 137 (287)
T ss_pred EEEEccchhccC
Confidence 999999998643
No 56
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.16 E-value=5.7e-11 Score=124.06 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=62.0
Q ss_pred cccccccccCcccC---CceEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchhhhhhccchhhhHhhhhh-hc
Q psy10020 8 KRPEYYQNLGAKVP---KGALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEFIEMIGGLGAARVRTEVV-FL 76 (640)
Q Consensus 8 ~~~~~l~~l~l~~~---~GiLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l~~~~~~~~~~~l~~~f~-~~ 76 (640)
..+......|+... .+++|+||||||||+++++++..+. .+++.+++.++...+.+.....++..|. ..
T Consensus 42 ~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~ 121 (284)
T TIGR02880 42 LVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM 121 (284)
T ss_pred HHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc
Confidence 33445555666642 2589999999999999998887432 3688888877777777766666667776 45
Q ss_pred ccccccchhhhhccc
Q psy10020 77 HCRVFLHEITIFDLE 91 (640)
Q Consensus 77 p~il~ideid~l~~~ 91 (640)
+++|||||++.+...
T Consensus 122 ~gvL~iDEi~~L~~~ 136 (284)
T TIGR02880 122 GGVLFIDEAYYLYRP 136 (284)
T ss_pred CcEEEEechhhhccC
Confidence 689999999998643
No 57
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.10 E-value=2e-10 Score=118.61 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=58.0
Q ss_pred cCcccCC---ceEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhhhhhccchhhhHhhhhh-hcccccccch
Q psy10020 16 LGAKVPK---GALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFIEMIGGLGAARVRTEVV-FLHCRVFLHE 84 (640)
Q Consensus 16 l~l~~~~---GiLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~~~~~~~~~~~l~~~f~-~~p~il~ide 84 (640)
.|...+. +++|+|||||||||+++++|..+ ...++.+++.++...+.++....++..|. ..+++||+||
T Consensus 34 ~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE 113 (261)
T TIGR02881 34 EGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDE 113 (261)
T ss_pred cCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhccCCEEEEec
Confidence 4444433 37899999999999999999742 24677788888888888887777777776 4468999999
Q ss_pred hhhhc
Q psy10020 85 ITIFD 89 (640)
Q Consensus 85 id~l~ 89 (640)
++.+.
T Consensus 114 ~~~L~ 118 (261)
T TIGR02881 114 AYSLA 118 (261)
T ss_pred hhhhc
Confidence 99986
No 58
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.04 E-value=7.7e-10 Score=130.67 Aligned_cols=69 Identities=26% Similarity=0.299 Sum_probs=49.6
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh---------hhhccchhhhHhhhhh---hcccccccchhhhhcc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI---------EMIGGLGAARVRTEVV---FLHCRVFLHEITIFDL 90 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~---------~~~~~~~~~~l~~~f~---~~p~il~ideid~l~~ 90 (640)
.++|+||||||||+++++||+.++.+++.++...+. ..+.+.....+...|. ..++++++||+|.+.+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~ 428 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS 428 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC
Confidence 488999999999999999999999999888654321 1233433334444443 2345899999999985
Q ss_pred c
Q psy10020 91 E 91 (640)
Q Consensus 91 ~ 91 (640)
.
T Consensus 429 ~ 429 (775)
T TIGR00763 429 S 429 (775)
T ss_pred c
Confidence 3
No 59
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.03 E-value=6.1e-10 Score=130.77 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=59.0
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhh--hhhccchhhhHhhhhh----hccccccc
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFI--EMIGGLGAARVRTEVV----FLHCRVFL 82 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~--~~~~~~~~~~l~~~f~----~~p~il~i 82 (640)
.-..+++|+||||||||++++.+|..+ +..++.++...+. ..+.|+.+.+++.+|. ..++||||
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfi 280 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFI 280 (731)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEE
Confidence 345569999999999999999999855 5567777776665 3566777888888886 45899999
Q ss_pred chhhhhccch
Q psy10020 83 HEITIFDLET 92 (640)
Q Consensus 83 deid~l~~~r 92 (640)
||++.+...+
T Consensus 281 DEih~l~~~g 290 (731)
T TIGR02639 281 DEIHTIVGAG 290 (731)
T ss_pred ecHHHHhccC
Confidence 9999998554
No 60
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.96 E-value=9.2e-09 Score=109.78 Aligned_cols=63 Identities=29% Similarity=0.389 Sum_probs=45.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh--hcccccccchhhhhc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV--FLHCRVFLHEITIFD 89 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--~~p~il~ideid~l~ 89 (640)
+..++|+||||||||++++++|..++..+..+++..+.. ...+...+. ..+.++||||++.+.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~l~~~~vl~IDEi~~l~ 115 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTNLEEGDVLFIDEIHRLS 115 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHhcccCCEEEEecHhhcc
Confidence 456899999999999999999999888776665543321 111222222 456899999999886
No 61
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.92 E-value=9.9e-09 Score=108.20 Aligned_cols=66 Identities=32% Similarity=0.365 Sum_probs=44.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhhcc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIFDL 90 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l~~ 90 (640)
+.+++|+||||||||+|++++|..++.++..+.+..... .+.....+.. ...+.++|+||++.+..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~~l~~~l~~--~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PGDLAAILTN--LEEGDVLFIDEIHRLSP 95 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--chhHHHHHHh--cccCCEEEEehHhhhCH
Confidence 345889999999999999999998887766655443221 0111111111 14567999999998863
No 62
>KOG0727|consensus
Probab=98.88 E-value=7.7e-10 Score=109.51 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=118.3
Q ss_pred HHHHhhCC----CCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhcc-CCCCCCccchhhhHhhhhh
Q psy10020 271 MKKQNFLP----QTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELG-SPIDTSRSHRVLRKWVLSS 345 (640)
Q Consensus 271 ~~LA~~t~----G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~-~~g~~~~~~~~~~~~~~ql 345 (640)
..+|..|. ...|++|.+-|-|-|.++|+..|+.|++++++||+++++ +++... .......+..+. .-+..|
T Consensus 207 kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifidei---daiatkrfdaqtgadrevq-ril~el 282 (408)
T KOG0727|consen 207 KAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEI---DAIATKRFDAQTGADREVQ-RILIEL 282 (408)
T ss_pred HHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehh---hhHhhhhccccccccHHHH-HHHHHH
Confidence 35566554 378999999999999999999999999999999999999 555432 111122121111 234699
Q ss_pred hcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccc
Q psy10020 346 LLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLR 425 (640)
Q Consensus 346 L~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE 425 (640)
|+.||||.+...+-| | +++|+.|.+|+++++|+ +-++-..+.+|+.+. +.-.+.-|+..| ...+
T Consensus 283 lnqmdgfdq~~nvkv--------i--matnradtldpallrpg-rldrkiefplpdrrq---krlvf~titskm--~ls~ 346 (408)
T KOG0727|consen 283 LNQMDGFDQTTNVKV--------I--MATNRADTLDPALLRPG-RLDRKIEFPLPDRRQ---KRLVFSTITSKM--NLSD 346 (408)
T ss_pred HHhccCcCcccceEE--------E--EecCcccccCHhhcCCc-cccccccCCCCchhh---hhhhHHhhhhcc--cCCc
Confidence 999999998776544 4 45599999999999997 656666677776321 222233333322 2233
Q ss_pred eEEec------cccchhhhhHHHHHHHHHHHhchhhhcccCCCCcccceEEE
Q psy10020 426 KWVLS------SLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTI 471 (640)
Q Consensus 426 ~ii~g------~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v~kvtI 471 (640)
++.+. .--+||++ +..+..+.+|+.+...-.+..+|++.+.+..+
T Consensus 347 ~vdle~~v~rpdkis~adi-~aicqeagm~avr~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 347 EVDLEDLVARPDKISGADI-NAICQEAGMLAVRENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred ccCHHHHhcCccccchhhH-HHHHHHHhHHHHHhcceeeeHHHHHHHHHhhc
Confidence 33332 23478998 65666666666665555566666776655544
No 63
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.88 E-value=5.4e-09 Score=121.98 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=52.2
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhh--hhhccchhhhHhhhhh----hcccccccc
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFI--EMIGGLGAARVRTEVV----FLHCRVFLH 83 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~--~~~~~~~~~~l~~~f~----~~p~il~id 83 (640)
-..+++|+||||||||++++.++... +..++.++...+. ..+.|+.+.+++.++. ..+++||||
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfID 285 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEec
Confidence 34568999999999999999999742 2334444444433 2345666666666654 567899999
Q ss_pred hhhhhccchh
Q psy10020 84 EITIFDLETK 93 (640)
Q Consensus 84 eid~l~~~r~ 93 (640)
|++.+...+.
T Consensus 286 EIh~L~g~g~ 295 (758)
T PRK11034 286 EIHTIIGAGA 295 (758)
T ss_pred cHHHHhccCC
Confidence 9999986543
No 64
>KOG0726|consensus
Probab=98.86 E-value=7.2e-10 Score=111.79 Aligned_cols=176 Identities=11% Similarity=0.058 Sum_probs=121.1
Q ss_pred HHHHhhCCC----CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCC-CCCCccchhhhHhhhhh
Q psy10020 271 MKKQNFLPQ----TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSP-IDTSRSHRVLRKWVLSS 345 (640)
Q Consensus 271 ~~LA~~t~G----~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~-g~~~~~~~~~~~~~~ql 345 (640)
..+|++|.. .+|+++.+-+.|-|++.|++.|+.|.+.+++|+|+++| +|+.--.- ......+.+. .|.+.|
T Consensus 237 KAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEI---dAiGtKRyds~SggerEiQ-rtmLEL 312 (440)
T KOG0726|consen 237 KAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEI---DAIGTKRYDSNSGGEREIQ-RTMLEL 312 (440)
T ss_pred HHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehh---hhhccccccCCCccHHHHH-HHHHHH
Confidence 356666664 78999999999999999999999999999999999999 77654321 1222222333 356699
Q ss_pred hcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccc
Q psy10020 346 LLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLR 425 (640)
Q Consensus 346 L~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE 425 (640)
|+.+|||.+...+-| .+++|+.+.+|+|+|||+ +-++-..+.+|++ .|+..++..++..+ ..++
T Consensus 313 LNQldGFdsrgDvKv----------imATnrie~LDPaLiRPG-rIDrKIef~~pDe---~TkkkIf~IHTs~M--tl~~ 376 (440)
T KOG0726|consen 313 LNQLDGFDSRGDVKV----------IMATNRIETLDPALIRPG-RIDRKIEFPLPDE---KTKKKIFQIHTSRM--TLAE 376 (440)
T ss_pred HHhccCccccCCeEE----------EEecccccccCHhhcCCC-ccccccccCCCch---hhhceeEEEeeccc--chhc
Confidence 999999987554433 445699999999999997 5565566666654 36667776666544 2344
Q ss_pred eEEec------cccchhhhhH--HHHHHHHHHHhchhhhcccCCCCcccceE
Q psy10020 426 KWVLS------SLLTVNKFAS--LVCRQVAFHESGHALVGWLLPHTDALLKV 469 (640)
Q Consensus 426 ~ii~g------~~ttGA~l~~--n~~~~~A~~e~gha~~~~~~~~~e~v~kv 469 (640)
.+.+. .-.+||++-. -++-..|++|.+ ..+.++||..+.+.
T Consensus 377 dVnle~li~~kddlSGAdIkAictEaGllAlRerR---m~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 377 DVNLEELIMTKDDLSGADIKAICTEAGLLALRERR---MKVTMEDFKKAKEK 425 (440)
T ss_pred cccHHHHhhcccccccccHHHHHHHHhHHHHHHHH---hhccHHHHHHHHHH
Confidence 44442 3468999833 344455555554 56667777766333
No 65
>KOG0728|consensus
Probab=98.86 E-value=6.9e-10 Score=109.71 Aligned_cols=176 Identities=12% Similarity=0.093 Sum_probs=113.6
Q ss_pred HHHhhCC----CCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCC-CCCccchhhhHhhhhhh
Q psy10020 272 KKQNFLP----QTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPI-DTSRSHRVLRKWVLSSL 346 (640)
Q Consensus 272 ~LA~~t~----G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g-~~~~~~~~~~~~~~qlL 346 (640)
.+|-.|+ ..||+++.+-|-|-|++.|+.+|-.||+.+|+|||+++| +++...... ....+..+. .|.+.||
T Consensus 200 aVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdei---dsigs~r~e~~~ggdsevq-rtmlell 275 (404)
T KOG0728|consen 200 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEI---DSIGSSRVESGSGGDSEVQ-RTMLELL 275 (404)
T ss_pred HHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecc---cccccccccCCCCccHHHH-HHHHHHH
Confidence 4444444 489999999999999999999999999999999999999 666543211 111121222 3566999
Q ss_pred cccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhh---cccc-
Q psy10020 347 LTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTS---RSHR- 422 (640)
Q Consensus 347 ~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~---l~G~- 422 (640)
+.+|||+....+-| |. ++||.|.+|+++++|+ +-++-..+..|++. .|.+++..+... +-|.
T Consensus 276 nqldgfeatknikv--------im--atnridild~allrpg-ridrkiefp~p~e~---ar~~ilkihsrkmnl~rgi~ 341 (404)
T KOG0728|consen 276 NQLDGFEATKNIKV--------IM--ATNRIDILDPALLRPG-RIDRKIEFPPPNEE---ARLDILKIHSRKMNLTRGIN 341 (404)
T ss_pred HhccccccccceEE--------EE--eccccccccHhhcCCC-cccccccCCCCCHH---HHHHHHHHhhhhhchhcccC
Confidence 99999987766544 44 5599999999999997 54555545444432 345555544432 2222
Q ss_pred ---ccceEEeccccchhhhhHHHHHHHHHHHhchhhhcccCCCCccc-ceE
Q psy10020 423 ---VLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL-LKV 469 (640)
Q Consensus 423 ---aAE~ii~g~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v-~kv 469 (640)
.||++ ...+||+. ..++..+.+.+-+...+.+..+|++-+ .||
T Consensus 342 l~kiaekm---~gasgaev-k~vcteagm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 342 LRKIAEKM---PGASGAEV-KGVCTEAGMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred HHHHHHhC---CCCccchh-hhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 22322 12355555 345555555555555577777777754 444
No 66
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.83 E-value=1.4e-08 Score=113.10 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=45.3
Q ss_pred CceEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCchhhhhhccchh----hhHhhhhhhcccccccchhhhhcc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGSEFIEMIGGLGA----ARVRTEVVFLHCRVFLHEITIFDL 90 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~~l~~~~~~~~~----~~l~~~f~~~p~il~ideid~l~~ 90 (640)
.+++|+||+|+|||+|+++++..+ +..++.+++.++...+..... ..+...+ ....+|++||++.+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAG 225 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcC
Confidence 348899999999999999999854 445677777665533322111 1111111 3467899999998863
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.83 E-value=8e-09 Score=122.57 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=53.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccC----------CCeEEecCchhh--hhhccchhhhHhhhhh-----hcccccccc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEAN----------VPFLSMNGSEFI--EMIGGLGAARVRTEVV-----FLHCRVFLH 83 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~----------~~~i~v~~~~l~--~~~~~~~~~~l~~~f~-----~~p~il~id 83 (640)
..+.+|+||||||||++++.+|..+. ..++.++...+. ..+.|+.+.+++.++. ..++|||||
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfID 287 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFID 287 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 34589999999999999999998542 335555555444 2455666777777776 346899999
Q ss_pred hhhhhccchh
Q psy10020 84 EITIFDLETK 93 (640)
Q Consensus 84 eid~l~~~r~ 93 (640)
|++.+...++
T Consensus 288 Eih~l~~~g~ 297 (852)
T TIGR03345 288 EAHTLIGAGG 297 (852)
T ss_pred ChHHhccCCC
Confidence 9999986554
No 68
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.80 E-value=2.3e-08 Score=105.62 Aligned_cols=60 Identities=32% Similarity=0.471 Sum_probs=47.0
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh--------hcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV--------FLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--------~~p~il~ideid~l~ 89 (640)
..+||||||||||||+++||+..+..|..++...-. .+.++.++. -...+||+||+..|.
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g-------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn 117 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG-------VKDLREIIEEARKNRLLGRRTILFLDEIHRFN 117 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc-------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcC
Confidence 378999999999999999999999999999875432 223333333 236899999999887
No 69
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.78 E-value=1.6e-08 Score=120.26 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=55.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhh--hhhccchhhhHhhhhh-----hcccccccc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFI--EMIGGLGAARVRTEVV-----FLHCRVFLH 83 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~--~~~~~~~~~~l~~~f~-----~~p~il~id 83 (640)
..+++|+||||||||++++.+|... +..++.++...+. ..+.|+.+.+++.+|. ..+++||||
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfID 278 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 278 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3458899999999999999999865 4566777666654 3455677777777765 357899999
Q ss_pred hhhhhccchh
Q psy10020 84 EITIFDLETK 93 (640)
Q Consensus 84 eid~l~~~r~ 93 (640)
|++.+...++
T Consensus 279 Eih~l~~~~~ 288 (857)
T PRK10865 279 ELHTMVGAGK 288 (857)
T ss_pred cHHHhccCCC
Confidence 9999985543
No 70
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.2e-08 Score=114.44 Aligned_cols=70 Identities=23% Similarity=0.305 Sum_probs=52.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh---------hhhccchhhhHhhhhh---hcccccccchhhhhccc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI---------EMIGGLGAARVRTEVV---FLHCRVFLHEITIFDLE 91 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~---------~~~~~~~~~~l~~~f~---~~p~il~ideid~l~~~ 91 (640)
++|+||||+|||+|.++||..++..|+.++..-+. ..|.|...-++-+.+. ....++++||+|.++..
T Consensus 353 LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss 432 (782)
T COG0466 353 LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSS 432 (782)
T ss_pred EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCC
Confidence 55999999999999999999999999998765443 3455655544444333 44578999999999854
Q ss_pred hh
Q psy10020 92 TK 93 (640)
Q Consensus 92 r~ 93 (640)
-.
T Consensus 433 ~r 434 (782)
T COG0466 433 FR 434 (782)
T ss_pred CC
Confidence 43
No 71
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.76 E-value=3.2e-08 Score=108.74 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=44.6
Q ss_pred CceEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCchhhhhhccch----hhhHhhhhhhcccccccchhhhhcc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGSEFIEMIGGLG----AARVRTEVVFLHCRVFLHEITIFDL 90 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~~l~~~~~~~~----~~~l~~~f~~~p~il~ideid~l~~ 90 (640)
.+++|+||+|+|||+|+++++..+ +..++.+++.++...+.... .......+ ....+|++||++.+..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAG 213 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcC
Confidence 347899999999999999999854 45677777766543322111 11111111 3356899999998763
No 72
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.75 E-value=2.3e-08 Score=99.17 Aligned_cols=64 Identities=33% Similarity=0.429 Sum_probs=41.3
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhhcc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIFDL 90 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l~~ 90 (640)
.++|+||||+|||||++.||..++.++..+++..+.. .++....+.. + ....+||+||+..|..
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--~~dl~~il~~-l-~~~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--AGDLAAILTN-L-KEGDILFIDEIHRLNK 115 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--CHHHHHHHHT----TT-EEEECTCCC--H
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--HHHHHHHHHh-c-CCCcEEEEechhhccH
Confidence 3889999999999999999999999999888865431 1111111111 1 4467999999998873
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=98.74 E-value=4e-08 Score=110.27 Aligned_cols=70 Identities=29% Similarity=0.254 Sum_probs=48.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhh-ccchh---hhHhhhhhhcccccccchhhhhcc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI-GGLGA---ARVRTEVVFLHCRVFLHEITIFDL 90 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~-~~~~~---~~l~~~f~~~p~il~ideid~l~~ 90 (640)
++.++|+|||||||||+++++|..++..++.++.++..... ..... .....+|...+.+|++||+|.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 56799999999999999999999999999999877643110 00000 001111112467899999998864
No 74
>KOG2004|consensus
Probab=98.74 E-value=2.3e-08 Score=111.45 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=50.5
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh---------hhhccchhhhHhhhhh---hcccccccchhhhhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI---------EMIGGLGAARVRTEVV---FLHCRVFLHEITIFD 89 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~---------~~~~~~~~~~l~~~f~---~~p~il~ideid~l~ 89 (640)
++|+||||.|||+++|+||..++..|+.++-.-+. ..|.|...-++-+.+. ..+.+++|||+|.++
T Consensus 441 lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG 518 (906)
T KOG2004|consen 441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLG 518 (906)
T ss_pred EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhC
Confidence 45999999999999999999999999888665432 2455555444444443 556789999999998
No 75
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.72 E-value=1.9e-08 Score=119.62 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=60.3
Q ss_pred cCcccCCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhh--hhhccchhhhHhhhhh----hcccc
Q psy10020 16 LGAKVPKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFI--EMIGGLGAARVRTEVV----FLHCR 79 (640)
Q Consensus 16 l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~--~~~~~~~~~~l~~~f~----~~p~i 79 (640)
++-..+.+++|+||||||||++++.+|... +..++.++...+. ..+.|+.+.+++.++. ..++|
T Consensus 195 L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~I 274 (821)
T CHL00095 195 LGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNII 274 (821)
T ss_pred HcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeE
Confidence 344556679999999999999999999854 3567888877665 3556777778888875 45789
Q ss_pred cccchhhhhccchh
Q psy10020 80 VFLHEITIFDLETK 93 (640)
Q Consensus 80 l~ideid~l~~~r~ 93 (640)
|||||++.+.....
T Consensus 275 LfiDEih~l~~~g~ 288 (821)
T CHL00095 275 LVIDEVHTLIGAGA 288 (821)
T ss_pred EEEecHHHHhcCCC
Confidence 99999999985543
No 76
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.72 E-value=3.4e-08 Score=117.83 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=53.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhh--hhhccchhhhHhhhhh-----hcccccccc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFI--EMIGGLGAARVRTEVV-----FLHCRVFLH 83 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~--~~~~~~~~~~l~~~f~-----~~p~il~id 83 (640)
..+.+|+||||+|||++++.++... +..++.++...+. ..+.++.+.+++.+|. ..+++||||
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfID 273 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFID 273 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEec
Confidence 4458899999999999999999854 4556666655553 3455666777777765 247899999
Q ss_pred hhhhhccch
Q psy10020 84 EITIFDLET 92 (640)
Q Consensus 84 eid~l~~~r 92 (640)
|++.+...+
T Consensus 274 Eih~l~~~g 282 (852)
T TIGR03346 274 ELHTLVGAG 282 (852)
T ss_pred cHHHhhcCC
Confidence 999998544
No 77
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.72 E-value=3.5e-08 Score=102.04 Aligned_cols=35 Identities=40% Similarity=0.560 Sum_probs=30.8
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGS 55 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~ 55 (640)
...++|+||||||||+++++||..++.+++.+++.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 34589999999999999999999889999888665
No 78
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.70 E-value=5.2e-08 Score=114.60 Aligned_cols=68 Identities=22% Similarity=0.327 Sum_probs=47.1
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh---------hhhccchhhhHhhhhh---hcccccccchhhhhccc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI---------EMIGGLGAARVRTEVV---FLHCRVFLHEITIFDLE 91 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~---------~~~~~~~~~~l~~~f~---~~p~il~ideid~l~~~ 91 (640)
++|+||||||||++++.+|+.++.+++.++..... ..+.|.....+...+. ....++++||+|.+...
T Consensus 352 i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~ 431 (784)
T PRK10787 352 LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSD 431 (784)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccc
Confidence 77999999999999999999999888777654332 1233333223332233 23458999999998754
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=9.1e-08 Score=106.50 Aligned_cols=37 Identities=5% Similarity=-0.013 Sum_probs=27.8
Q ss_pred cceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 199 ELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 199 ~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
..+++ |++|+.+..+++++.+ .+.|..|+.+-+..++
T Consensus 146 ~~vv~-Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L 185 (472)
T PRK14962 146 SHVVF-VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRL 185 (472)
T ss_pred CcEEE-EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHH
Confidence 35666 7788888999999987 7778888855555555
No 80
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.68 E-value=1.2e-07 Score=103.54 Aligned_cols=35 Identities=40% Similarity=0.654 Sum_probs=27.7
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGS 55 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~ 55 (640)
+..++|+||||+|||++++.++..+ +..++.+++.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 3458899999999999999998754 3556777664
No 81
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.66 E-value=1e-07 Score=105.63 Aligned_cols=68 Identities=12% Similarity=0.210 Sum_probs=45.1
Q ss_pred CceEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCchhhhhhccc----hhhhHhhhhhhcccccccchhhhhc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGSEFIEMIGGL----GAARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~~l~~~~~~~----~~~~l~~~f~~~p~il~ideid~l~ 89 (640)
.+++|+||+|+|||+|+++++..+ +..++++++.++....... ........+..++.+|++||++.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLI 207 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhc
Confidence 348899999999999999999853 3456777776654332211 1111222222357899999999875
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=1.3e-07 Score=103.03 Aligned_cols=78 Identities=5% Similarity=-0.009 Sum_probs=50.5
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccc
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEG 259 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (640)
.||..|+.- ..++++ |.+|++++.|.|++++ .+.|+.|+.+....+|.+...
T Consensus 136 aLLk~LEep------~~~~~f-IL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------------------ 190 (394)
T PRK07940 136 ALLKAVEEP------PPRTVW-LLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------------------ 190 (394)
T ss_pred HHHHHhhcC------CCCCeE-EEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------------------
Confidence 456666543 234555 5556669999999987 999999996666666621111
Q ss_pred cCCCCcchhcHHHHHhhCCCCCccchhhhhh
Q psy10020 260 RNLNIPASFKMMKKQNFLPQTSTASNVNQSH 290 (640)
Q Consensus 260 ~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~ 290 (640)
++ .-....++..+.|..+..+.-+..
T Consensus 191 ----~~-~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 191 ----VD-PETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred ----CC-HHHHHHHHHHcCCCHHHHHHHhcC
Confidence 11 223567889999988876655544
No 83
>KOG0729|consensus
Probab=98.65 E-value=4.4e-09 Score=104.94 Aligned_cols=175 Identities=15% Similarity=0.071 Sum_probs=119.0
Q ss_pred cHHHHHhhCCC----CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhcc-----CCCCCCccchhhh
Q psy10020 269 KMMKKQNFLPQ----TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELG-----SPIDTSRSHRVLR 339 (640)
Q Consensus 269 ~~~~LA~~t~G----~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~-----~~g~~~~~~~~~~ 339 (640)
--..+|++|.. .-|+++.+-|+|-||++|+.+|..||..+.|+|+.+++ +|+.-. .+|..+-..
T Consensus 227 ~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdei---daiggarfddg~ggdnevqr---- 299 (435)
T KOG0729|consen 227 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEI---DAIGGARFDDGAGGDNEVQR---- 299 (435)
T ss_pred HHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeecc---ccccCccccCCCCCcHHHHH----
Confidence 34577888875 68999999999999999999999999999999999999 666543 233332223
Q ss_pred HhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhc
Q psy10020 340 KWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSR 419 (640)
Q Consensus 340 ~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l 419 (640)
|.+.|+..+|||.+.-.+-| +. ++|++|.+|+++++|+ +-++-+.+-+|+ +..|..++..++..+
T Consensus 300 -tmleli~qldgfdprgnikv--------lm--atnrpdtldpallrpg-rldrkvef~lpd---legrt~i~kihaksm 364 (435)
T KOG0729|consen 300 -TMLELINQLDGFDPRGNIKV--------LM--ATNRPDTLDPALLRPG-RLDRKVEFGLPD---LEGRTHIFKIHAKSM 364 (435)
T ss_pred -HHHHHHHhccCCCCCCCeEE--------Ee--ecCCCCCcCHhhcCCc-ccccceeccCCc---ccccceeEEEecccc
Confidence 45599999999998766544 44 4589999999999997 666666777776 334444554444433
Q ss_pred cccccceEEec------cccchhhhhH--HHHHHHHHHHhchhhhcccCCCCcccceE
Q psy10020 420 SHRVLRKWVLS------SLLTVNKFAS--LVCRQVAFHESGHALVGWLLPHTDALLKV 469 (640)
Q Consensus 420 ~G~aAE~ii~g------~~ttGA~l~~--n~~~~~A~~e~gha~~~~~~~~~e~v~kv 469 (640)
. .-.+|-|. .-++||++-+ -++-+.|+++.+....- -...+.|.||
T Consensus 365 s--verdir~ellarlcpnstgaeirsvcteagmfairarrk~ate--kdfl~av~kv 418 (435)
T KOG0729|consen 365 S--VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATE--KDFLDAVNKV 418 (435)
T ss_pred c--cccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhH--HHHHHHHHHH
Confidence 1 11222221 2368998855 45666666665533322 2235666776
No 84
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.6e-07 Score=103.46 Aligned_cols=72 Identities=6% Similarity=0.009 Sum_probs=46.8
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccc
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEG 259 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (640)
.||..|+.- ...+++ |.+|+.++.|.+++++ .+.|..++.+....++ +.+... ++
T Consensus 140 ALLKtLEEP------p~~viF-ILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L-~~i~~~--------------Eg 197 (484)
T PRK14956 140 ALLKTLEEP------PAHIVF-ILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYS-EKLCKI--------------EN 197 (484)
T ss_pred HHHHHhhcC------CCceEE-EeecCChhhccHHHHhhhheeeecCCCHHHHHHHH-HHHHHH--------------cC
Confidence 455555432 347788 8999999999999988 5788877766566666 444330 11
Q ss_pred cCCCCcchhcHHHHHhhCCC
Q psy10020 260 RNLNIPASFKMMKKQNFLPQ 279 (640)
Q Consensus 260 ~~~~~~~~~~~~~LA~~t~G 279 (640)
+.+ .+-.+..||+.+.|
T Consensus 198 --i~~-e~eAL~~Ia~~S~G 214 (484)
T PRK14956 198 --VQY-DQEGLFWIAKKGDG 214 (484)
T ss_pred --CCC-CHHHHHHHHHHcCC
Confidence 111 23457788888766
No 85
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.59 E-value=2.5e-07 Score=104.78 Aligned_cols=93 Identities=17% Similarity=0.116 Sum_probs=54.7
Q ss_pred eeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhC
Q psy10020 201 HIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFL 277 (640)
Q Consensus 201 viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t 277 (640)
.++ ++|||.|+.|+|++++ .+.|+.++.+-+..++ +.... + .++.++ +-.++.|+..+
T Consensus 235 rlI-~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il-~~~a~----k------------~~i~is-~~al~~I~~y~ 295 (531)
T TIGR02902 235 RLI-GATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIA-KNAAE----K------------IGINLE-KHALELIVKYA 295 (531)
T ss_pred EEE-EEecCCcccCChHHhhhhheeeCCCCCHHHHHHHH-HHHHH----H------------cCCCcC-HHHHHHHHHhh
Confidence 455 6788899999999988 5556555533334444 32221 0 112222 22355677665
Q ss_pred CCCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhh
Q psy10020 278 PQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIE 324 (640)
Q Consensus 278 ~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~ 324 (640)
. +++++.+++. .++..+..+.... |+.+|+ ++.+.
T Consensus 296 ~--n~Rel~nll~-------~Aa~~A~~~~~~~-It~~dI--~~vl~ 330 (531)
T TIGR02902 296 S--NGREAVNIVQ-------LAAGIALGEGRKR-ILAEDI--EWVAE 330 (531)
T ss_pred h--hHHHHHHHHH-------HHHHHHhhCCCcE-EcHHHH--HHHhC
Confidence 3 7888888888 5554444444444 499999 55543
No 86
>PRK06893 DNA replication initiation factor; Validated
Probab=98.54 E-value=3.1e-07 Score=93.08 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=37.1
Q ss_pred eEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l~ 89 (640)
++|+||||||||+|+++++... +.....++....... ....+.. + .+..++++||++.+.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~----~~~~~~~-~-~~~dlLilDDi~~~~ 104 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF----SPAVLEN-L-EQQDLVCLDDLQAVI 104 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh----hHHHHhh-c-ccCCEEEEeChhhhc
Confidence 6799999999999999999853 233444433221100 0111111 1 345689999999876
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=3.8e-07 Score=103.12 Aligned_cols=47 Identities=6% Similarity=-0.022 Sum_probs=35.5
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+.- ...+++ |.+||.++.|.+.++. .+.|..++.+.+..+|
T Consensus 143 ALLKTLEEP------P~~v~F-ILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L 192 (700)
T PRK12323 143 AMLKTLEEP------PEHVKF-ILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHL 192 (700)
T ss_pred HHHHhhccC------CCCceE-EEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHH
Confidence 566666542 346777 8999999999999987 8888888866666666
No 88
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.52 E-value=9.3e-08 Score=93.65 Aligned_cols=57 Identities=21% Similarity=0.462 Sum_probs=49.2
Q ss_pred cccccccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhh
Q psy10020 2 EFVDYLKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFI 58 (640)
Q Consensus 2 eiv~~l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~ 58 (640)
++..+++..++++++++++.+| +.|+||||||||||+|||.+ .+..+.+.+++..+.
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~ 67 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVG 67 (240)
T ss_pred eeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEecc
Confidence 3456678889999999999999 55999999999999999998 667899999987654
No 89
>KOG0652|consensus
Probab=98.52 E-value=3.3e-08 Score=98.48 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=95.6
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccch
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQ 359 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~ 359 (640)
..|-++.++|-|-||+-|+.+|..|++.+|+|||++++ +|++.-.-..++.-.+-.-.|.+.||..+|||++++.+-
T Consensus 236 LAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDEl---DAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vK 312 (424)
T KOG0652|consen 236 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDEL---DAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVK 312 (424)
T ss_pred hcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEech---hhhccccccccccccHHHHHHHHHHHHhhcCCCCccceE
Confidence 57889999999999999999999999999999999999 777643322222111111236679999999999999876
Q ss_pred hccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec
Q psy10020 360 VAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS 430 (640)
Q Consensus 360 vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g 430 (640)
| |+| +||.|.+|++++|.+ +-++-..+..|++. .|..++..+...+ ...+++.|.
T Consensus 313 v--------iAA--TNRvDiLDPALlRSG-RLDRKIEfP~Pne~---aRarIlQIHsRKM--nv~~DvNfe 367 (424)
T KOG0652|consen 313 V--------IAA--TNRVDILDPALLRSG-RLDRKIEFPHPNEE---ARARILQIHSRKM--NVSDDVNFE 367 (424)
T ss_pred E--------Eee--cccccccCHHHhhcc-cccccccCCCCChH---HHHHHHHHhhhhc--CCCCCCCHH
Confidence 6 555 489999999999996 55555566666543 4555666555544 344556554
No 90
>KOG2028|consensus
Probab=98.51 E-value=6.9e-07 Score=93.08 Aligned_cols=60 Identities=30% Similarity=0.510 Sum_probs=43.0
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCC---eEEecCchhhhhhccchhhhHhhhhh---------hcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVP---FLSMNGSEFIEMIGGLGAARVRTEVV---------FLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~---~i~v~~~~l~~~~~~~~~~~l~~~f~---------~~p~il~ideid~l~ 89 (640)
.++|+||||||||||+|.|+.....+ |+.++...-. .+.++.+|. ....|||+||+..|.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~-------t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK-------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc-------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 37899999999999999999866555 6666554322 122333333 456899999999887
No 91
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=7.1e-07 Score=99.98 Aligned_cols=73 Identities=12% Similarity=-0.003 Sum_probs=45.6
Q ss_pred ccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHH
Q psy10020 198 RELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQ 274 (640)
Q Consensus 198 ~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA 274 (640)
...+++ |.+|+.++.+.+++.+ .+.|..++.+-+..++ +..... + ++.+ .+-.+..|+
T Consensus 156 p~~~vf-I~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L-~~i~~~--------------e--gi~i-e~eAL~~Ia 216 (507)
T PRK06645 156 PPHIIF-IFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLL-EYITKQ--------------E--NLKT-DIEALRIIA 216 (507)
T ss_pred CCCEEE-EEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHH-HHHHHH--------------c--CCCC-CHHHHHHHH
Confidence 346677 7788889999999886 6788888855555555 333220 1 1111 233467788
Q ss_pred hhCCCCCccchhhhhh
Q psy10020 275 NFLPQTSTASNVNQSH 290 (640)
Q Consensus 275 ~~t~G~sgadi~~l~~ 290 (640)
+.+.| +.++..+++.
T Consensus 217 ~~s~G-slR~al~~Ld 231 (507)
T PRK06645 217 YKSEG-SARDAVSILD 231 (507)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 88766 6666666655
No 92
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=6.3e-07 Score=102.67 Aligned_cols=47 Identities=4% Similarity=-0.049 Sum_probs=33.5
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|... ...+.+ |.+||+++.|.+.|+. ++.|..+..+.+..+|
T Consensus 138 ALLKtLEEP------P~~v~F-ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L 187 (830)
T PRK07003 138 AMLKTLEEP------PPHVKF-ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHL 187 (830)
T ss_pred HHHHHHHhc------CCCeEE-EEEECChhhccchhhhheEEEecCCcCHHHHHHHH
Confidence 455555442 336777 8899999999999887 7888877755555555
No 93
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.47 E-value=5.8e-07 Score=99.03 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=44.8
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhh----hhcccccccchhhhhc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEV----VFLHCRVFLHEITIFD 89 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f----~~~p~il~ideid~l~ 89 (640)
..++|+|||||||||++++|+...+..++.++....... .....+.... .....++|+||++.+.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~---~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~ 105 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVK---DLREVIEEARQRRSAGRRTILFIDEIHRFN 105 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHH---HHHHHHHHHHHhhhcCCceEEEEechhhhC
Confidence 358899999999999999999988888888876532111 0111111111 1256799999999775
No 94
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=5.2e-07 Score=102.10 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=45.6
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCchhhhhhccchhhhHhhhhh---hcccccccchhhhhcc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGSEFIEMIGGLGAARVRTEVV---FLHCRVFLHEITIFDL 90 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~~l~~~~~~~~~~~l~~~f~---~~p~il~ideid~l~~ 90 (640)
.++|+|++|||||.|+++|+..+ +..+++++..++...+...........|. ....+|+|||++.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED 391 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC
Confidence 38899999999999999999854 45667887776654432221111111122 3457899999998863
No 95
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.46 E-value=2.1e-07 Score=86.37 Aligned_cols=67 Identities=31% Similarity=0.319 Sum_probs=42.7
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh--hhhccchh-hhHhhhhh--------hcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI--EMIGGLGA-ARVRTEVV--------FLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~--~~~~~~~~-~~l~~~f~--------~~p~il~ideid~l~ 89 (640)
+++|+||||||||++++.+|..++.+++.+.+.... ....+... ......|. ..++++++||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC
Confidence 378999999999999999999998888777665432 11111110 00011111 467899999998654
No 96
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.45 E-value=7.3e-07 Score=96.34 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=27.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccC---------CCeEEecCch
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEAN---------VPFLSMNGSE 56 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~---------~~~i~v~~~~ 56 (640)
+..++|+||||||||++++.++..+. ..++.+++..
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 44588999999999999999987432 3456666543
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.44 E-value=1.5e-06 Score=87.70 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=42.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhhc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l~ 89 (640)
..+++|+||+|||||+|+++++... +..++.+++...... ..+.....++++||++.+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA----------FDFDPEAELYAVDDVERLD 103 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH----------HhhcccCCEEEEeChhhcC
Confidence 3458899999999999999999843 556777776554311 0122345689999998764
No 98
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=9.3e-07 Score=95.74 Aligned_cols=36 Identities=8% Similarity=-0.012 Sum_probs=27.4
Q ss_pred ceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 200 LHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 200 ~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.+.+ |.+|+.++.+.+++.. .+.|..|+.+.+..++
T Consensus 149 ~~~f-Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L 187 (363)
T PRK14961 149 HIKF-ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFL 187 (363)
T ss_pred CeEE-EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHH
Confidence 5556 6778888899998875 8888888866666666
No 99
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.42 E-value=1.5e-06 Score=87.25 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=43.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhhc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l~ 89 (640)
+..++|+||+|||||+++++++... +.+++.+++..+.... ...+ ..+ ....++++||++.+.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~~~-~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----PEVL-EGL-EQADLVCLDDVEAIA 103 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH----HHHH-hhc-ccCCEEEEeChhhhc
Confidence 4458899999999999999999744 4567777776654221 0111 111 234589999999875
No 100
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.2e-06 Score=99.44 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=23.9
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
++..+||+||+|+||||+++++|..+++
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556899999999999999999996654
No 101
>PLN03025 replication factor C subunit; Provisional
Probab=98.41 E-value=1.1e-06 Score=93.39 Aligned_cols=65 Identities=28% Similarity=0.299 Sum_probs=39.2
Q ss_pred ceEEEcCCCchHHHHHHHHHhccC-----CCeEEecCchhhhhhccchhhhHhhhhh-------hcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEAN-----VPFLSMNGSEFIEMIGGLGAARVRTEVV-------FLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~-----~~~i~v~~~~l~~~~~~~~~~~l~~~f~-------~~p~il~ideid~l~ 89 (640)
.++|+|||||||||+++++|..+. ..++.++.++.... ......++..-+ ...-++++||+|.+.
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~--~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt 112 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGI--DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT 112 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccH--HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC
Confidence 388999999999999999998652 23455555432210 001111111100 124589999999875
No 102
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.40 E-value=8.3e-07 Score=81.20 Aligned_cols=68 Identities=37% Similarity=0.523 Sum_probs=46.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhh-------Hhhhhhhcccccccchhhhh
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAAR-------VRTEVVFLHCRVFLHEITIF 88 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~-------l~~~f~~~p~il~ideid~l 88 (640)
...++|+||||||||++++.++... +..++.++............... ........+.++++||++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 3458899999999999999999976 67788887766543221111110 11111256789999999987
No 103
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.39 E-value=5.5e-07 Score=94.81 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=49.7
Q ss_pred cccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhh--hccchhhhHh-----hhhh--------hccccccc
Q psy10020 18 AKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM--IGGLGAARVR-----TEVV--------FLHCRVFL 82 (640)
Q Consensus 18 l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~--~~~~~~~~l~-----~~f~--------~~p~il~i 82 (640)
+...+.++|.||||||||++++.+|..++.+++.+++...... ..|.....++ ..|. ..++++++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illl 140 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCF 140 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEe
Confidence 3446669999999999999999999999999998877654322 2332111110 0111 45678999
Q ss_pred chhhhhc
Q psy10020 83 HEITIFD 89 (640)
Q Consensus 83 deid~l~ 89 (640)
||+|...
T Consensus 141 DEin~a~ 147 (327)
T TIGR01650 141 DEYDAGR 147 (327)
T ss_pred chhhccC
Confidence 9999764
No 104
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.39 E-value=8.8e-07 Score=93.86 Aligned_cols=65 Identities=26% Similarity=0.265 Sum_probs=42.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh-----hcccccccchhhhh
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV-----FLHCRVFLHEITIF 88 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~-----~~p~il~ideid~l 88 (640)
+..++|+||||+|||+++++++...+.+++.+++.+ .. .......+..... ..+.++++||+|.+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l 112 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRL 112 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc--HHHHHHHHHHHHHhhcccCCCeEEEEECcccc
Confidence 333556899999999999999998888888887765 11 1111111111111 24578999999876
No 105
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.38 E-value=4.9e-07 Score=98.96 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=53.9
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh-hhhccchhh-hHhhhhh--------hcccccccchhhhhccc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI-EMIGGLGAA-RVRTEVV--------FLHCRVFLHEITIFDLE 91 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~-~~~~~~~~~-~l~~~f~--------~~p~il~ideid~l~~~ 91 (640)
.++||+||||||||+++++||..++.+++.+++..+. ..|.|.... .+..++. .+++++|+||+|.+...
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 4489999999999999999999999999999887764 345554322 2232221 46789999999999866
Q ss_pred h
Q psy10020 92 T 92 (640)
Q Consensus 92 r 92 (640)
+
T Consensus 189 ~ 189 (412)
T PRK05342 189 S 189 (412)
T ss_pred c
Confidence 3
No 106
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.37 E-value=2.2e-06 Score=91.47 Aligned_cols=35 Identities=40% Similarity=0.628 Sum_probs=27.1
Q ss_pred ceEEEcCCCchHHHHHHHHHhccC-----CCeEEecCchh
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEAN-----VPFLSMNGSEF 57 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~-----~~~i~v~~~~l 57 (640)
.++|+||||||||+++++++..+. .+++.++..++
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 588999999999999999998553 23566666544
No 107
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.37 E-value=6e-07 Score=97.92 Aligned_cols=70 Identities=27% Similarity=0.392 Sum_probs=52.2
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh-hhhccch-hhhHhhhhh--------hcccccccchhhhhccch
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI-EMIGGLG-AARVRTEVV--------FLHCRVFLHEITIFDLET 92 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~-~~~~~~~-~~~l~~~f~--------~~p~il~ideid~l~~~r 92 (640)
.+||+||||||||+++++||..++.++..+++..+. ..|.|.. ...+...+. .+++++|+||+|.+.+++
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~ 197 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKS 197 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhh
Confidence 488999999999999999999999999888877654 2354543 222222222 456899999999998754
No 108
>PRK06620 hypothetical protein; Validated
Probab=98.37 E-value=1.4e-06 Score=87.23 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.4
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
+.++|+||+|||||+|+++++...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 44889999999999999999986653
No 109
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.8e-06 Score=98.96 Aligned_cols=47 Identities=11% Similarity=0.064 Sum_probs=34.2
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|..- .+.+++ |.+|+.+..|.+.++. .+.|..++.+.+..+|
T Consensus 138 ALLKtLEEP------p~~v~F-IL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L 187 (647)
T PRK07994 138 ALLKTLEEP------PEHVKF-LLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQL 187 (647)
T ss_pred HHHHHHHcC------CCCeEE-EEecCCccccchHHHhhheEeeCCCCCHHHHHHHH
Confidence 555655542 346667 7788899999988876 8888888866666666
No 110
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.35 E-value=3.3e-07 Score=93.39 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=59.5
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhhhhhccchhhhHhhhhhh--ccccc
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFIEMIGGLGAARVRTEVVF--LHCRV 80 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~--~p~il 80 (640)
++...+++++++++++| +.|+||||||||||+|+|++.+ ..+.+.+++.++......+.++.+..+-|. .|.-+
T Consensus 12 y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 12 YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred ECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 45678999999999999 4499999999999999999944 478999999998765544444444444442 23333
Q ss_pred ccchhhhhc
Q psy10020 81 FLHEITIFD 89 (640)
Q Consensus 81 ~ideid~l~ 89 (640)
..-|+-.++
T Consensus 92 tV~d~V~~G 100 (258)
T COG1120 92 TVYELVLLG 100 (258)
T ss_pred EEeehHhhc
Confidence 343444444
No 111
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=3.3e-06 Score=94.07 Aligned_cols=82 Identities=7% Similarity=-0.012 Sum_probs=49.6
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccc
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEG 259 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (640)
.||..|+.. .+.+++ |.+|+.++.|.+.++. .+.|..++.+-+..++ ..+... ++
T Consensus 135 aLLK~LEeP------p~~v~f-Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L-~~ia~~--------------Eg 192 (491)
T PRK14964 135 ALLKTLEEP------APHVKF-ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHL-VDIAKK--------------EN 192 (491)
T ss_pred HHHHHHhCC------CCCeEE-EEEeCChHHHHHHHHHhheeeecccccHHHHHHHH-HHHHHH--------------cC
Confidence 455555543 335677 7888888999988877 7888777755555555 333320 11
Q ss_pred cCCCCcchhcHHHHHhhCCCCCccchhhhhh
Q psy10020 260 RNLNIPASFKMMKKQNFLPQTSTASNVNQSH 290 (640)
Q Consensus 260 ~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~ 290 (640)
+.+ ++-.+..|++.+.| +..++.+++.
T Consensus 193 --i~i-~~eAL~lIa~~s~G-slR~alslLd 219 (491)
T PRK14964 193 --IEH-DEESLKLIAENSSG-SMRNALFLLE 219 (491)
T ss_pred --CCC-CHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 111 23456788888865 5555555554
No 112
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.32 E-value=6.1e-07 Score=86.70 Aligned_cols=66 Identities=35% Similarity=0.295 Sum_probs=46.2
Q ss_pred eEEEcCCCchHHHHHHHHHhccCC----CeEEecCchhhhhhccchhhhHhhhhh--------hcccccccchhhhhccc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANV----PFLSMNGSEFIEMIGGLGAARVRTEVV--------FLHCRVFLHEITIFDLE 91 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~----~~i~v~~~~l~~~~~~~~~~~l~~~f~--------~~p~il~ideid~l~~~ 91 (640)
++|+||+|||||.++++||..+.. +++.++.+.+.... .....+..... .+..++++||+|...++
T Consensus 6 ~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~ 83 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS 83 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc
Confidence 679999999999999999998774 78888887765410 00111111111 33469999999999876
No 113
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.32 E-value=2.9e-06 Score=94.06 Aligned_cols=67 Identities=25% Similarity=0.339 Sum_probs=44.1
Q ss_pred CceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccc----hhhhHhhhhhhcccccccchhhhhc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGL----GAARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~----~~~~l~~~f~~~p~il~ideid~l~ 89 (640)
.+++|+||+|+|||+|+++++..+ +..+++++...+....... .....+..+ ....++++||++.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFS 215 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhc
Confidence 458899999999999999999844 4667777766554322111 111122222 345689999998875
No 114
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=3.1e-06 Score=95.25 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.6
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
++..+||+||+|+||||+++++|..+.+
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555789999999999999999996643
No 115
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=6.6e-06 Score=93.19 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=33.4
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+.. ...+++ |.+|+.+..|.+++++ .+.|..|+.+.+..++
T Consensus 138 aLLKtLEEP------p~~tvf-IL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L 187 (605)
T PRK05896 138 ALLKTLEEP------PKHVVF-IFATTEFQKIPLTIISRCQRYNFKKLNNSELQELL 187 (605)
T ss_pred HHHHHHHhC------CCcEEE-EEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHH
Confidence 455555542 335677 7888899999999876 8888888855555555
No 116
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.30 E-value=3.1e-06 Score=86.07 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=37.1
Q ss_pred CceEEEcCCCchHHHHHHHHHhccC---CCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhhc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEAN---VPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~---~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l~ 89 (640)
..++|+||+|||||+|+++++.... .....++....... ...+...+. +..++++||++.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~-----~~~~~~~~~-~~dlliiDdi~~~~ 110 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF-----VPEVLEGME-QLSLVCIDNIECIA 110 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh-----hHHHHHHhh-hCCEEEEeChhhhc
Confidence 3578999999999999999997432 23344433322110 011111121 22478999999875
No 117
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=3.7e-06 Score=96.23 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=24.5
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
.++.++||+||+|+||||++++++..+.+
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 44566899999999999999999996543
No 118
>PRK08727 hypothetical protein; Validated
Probab=98.29 E-value=5.6e-06 Score=84.13 Aligned_cols=59 Identities=25% Similarity=0.194 Sum_probs=38.2
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhhHhhhhh--hcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAARVRTEVV--FLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--~~p~il~ideid~l~ 89 (640)
.++|+||+|||||+|+.+++..+ +...+.++..+... .+...+. .+..++++||++.+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALEGRSLVALDGLESIA 106 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHhcCCEEEEeCccccc
Confidence 37899999999999999997742 33445554333221 1112222 344689999998776
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=2.3e-06 Score=101.02 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=33.5
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||+.|+... ..+++ |.+|+.++.|-+.|+. ++.|..++.+.+..+|
T Consensus 139 aLLK~LEEpP------~~~~f-Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L 188 (824)
T PRK07764 139 ALLKIVEEPP------EHLKF-IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYL 188 (824)
T ss_pred HHHHHHhCCC------CCeEE-EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHH
Confidence 5666665533 36666 7788888888888876 7888888866666666
No 120
>KOG0989|consensus
Probab=98.29 E-value=3.5e-06 Score=86.50 Aligned_cols=25 Identities=48% Similarity=0.624 Sum_probs=22.0
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
..|+|||||||||+.++++|..+..
T Consensus 59 ~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred eEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 3789999999999999999996654
No 121
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=3.7e-06 Score=98.16 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=32.3
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|... ...+.+ |.+|+.+..|-+.|+. .+.|..++.+....+|
T Consensus 138 ALLKtLEEP------P~~vrF-ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L 187 (944)
T PRK14949 138 ALLKTLEEP------PEHVKF-LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQL 187 (944)
T ss_pred HHHHHHhcc------CCCeEE-EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHH
Confidence 556666543 235666 7788888999888775 7778877755555555
No 122
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.26 E-value=6.1e-06 Score=95.30 Aligned_cols=38 Identities=5% Similarity=0.050 Sum_probs=27.7
Q ss_pred ccceeEEEeeccC---CCcccHHHHh-----HhccCcccHHHHHHHH
Q psy10020 198 RELHIVKMETQLR---AYESDKKLAR-----KQLIDSVNREIAETIL 236 (640)
Q Consensus 198 ~~~viv~I~aTn~---~~~lD~al~r-----~i~i~~P~~~i~~~~l 236 (640)
...++| ||++|. ++.|+|.+.. .+.|++++.+.+..+|
T Consensus 900 ~SKLiL-IGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dIL 945 (1164)
T PTZ00112 900 NSKLVL-IAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKII 945 (1164)
T ss_pred CCeEEE-EEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHH
Confidence 346778 999986 6677787766 5778888866666666
No 123
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.5e-06 Score=94.73 Aligned_cols=37 Identities=11% Similarity=0.009 Sum_probs=28.3
Q ss_pred cceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 199 ELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 199 ~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
..+++ |.+||.+..+.+++.+ .+.|..|+.+-...++
T Consensus 145 ~~t~~-Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L 184 (504)
T PRK14963 145 EHVIF-ILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKL 184 (504)
T ss_pred CCEEE-EEEcCChhhCChHHhcceEEEEecCCCHHHHHHHH
Confidence 35666 7788999999999877 8888888855555555
No 124
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.25 E-value=3.4e-06 Score=82.57 Aligned_cols=47 Identities=9% Similarity=-0.015 Sum_probs=33.0
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+.. .+.+++ |.+||.+..|.+++.+ .+.|..|+.+-+..++
T Consensus 115 ~Ll~~le~~------~~~~~~-il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l 164 (188)
T TIGR00678 115 ALLKTLEEP------PPNTLF-ILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWL 164 (188)
T ss_pred HHHHHhcCC------CCCeEE-EEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHH
Confidence 455555542 234555 6678888999999987 8888888866566666
No 125
>PHA02244 ATPase-like protein
Probab=98.24 E-value=2.5e-06 Score=91.01 Aligned_cols=69 Identities=20% Similarity=0.129 Sum_probs=44.8
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhcc---chhhhH-hhhh--hhcccccccchhhhhc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGG---LGAARV-RTEV--VFLHCRVFLHEITIFD 89 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~---~~~~~l-~~~f--~~~p~il~ideid~l~ 89 (640)
...++|+||+|||||+++++||..++.+++.++...-.....+ ...... ..++ .....++++||++.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASI 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCC
Confidence 4459999999999999999999999999998874311100001 000000 0011 1456899999998765
No 126
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=6.7e-06 Score=93.13 Aligned_cols=47 Identities=6% Similarity=0.015 Sum_probs=33.0
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+.. .+.+++ |.+|+++..+.+.++. .+.|..|+.+.+..++
T Consensus 138 aLLK~LEep------p~~~~f-IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L 187 (527)
T PRK14969 138 AMLKTLEEP------PEHVKF-ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHL 187 (527)
T ss_pred HHHHHHhCC------CCCEEE-EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHH
Confidence 455555542 345666 7788888889888765 8899888866555556
No 127
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.23 E-value=3.5e-06 Score=98.23 Aligned_cols=67 Identities=27% Similarity=0.360 Sum_probs=42.9
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh--hcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV--FLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--~~p~il~ideid~l~ 89 (640)
.++|+|||||||||++++++...+..++.+++.................... ....++|+||++.|.
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln 122 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN 122 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC
Confidence 4889999999999999999998888887776542211000000011111111 245689999998875
No 128
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.23 E-value=8.8e-07 Score=94.22 Aligned_cols=68 Identities=21% Similarity=0.380 Sum_probs=52.7
Q ss_pred ccccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhhhccchhhhHhhhhh
Q psy10020 5 DYLKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEMIGGLGAARVRTEVV 74 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~ 74 (640)
..+++..+++++++++.+| +.|.|||||||||++|+||| .+..+.+.+++.++....+ ....+..+||
T Consensus 13 k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~ig~VFQ 84 (352)
T COG3842 13 KSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPIGMVFQ 84 (352)
T ss_pred eecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhcccceeec
Confidence 3345678999999999999 44899999999999999999 5678899999998864222 1223455555
No 129
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.22 E-value=3.5e-06 Score=84.80 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=43.0
Q ss_pred eEEEcCCCchHHHHHHHHHhc-----cCCCeEEecCchhhhhhccchh----hhHhhhhhhcccccccchhhhhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE-----ANVPFLSMNGSEFIEMIGGLGA----ARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~-----~~~~~i~v~~~~l~~~~~~~~~----~~l~~~f~~~p~il~ideid~l~ 89 (640)
++|+||+|+|||.|+++++.. .+..+++++..++...+..... ..+...+ ...-++++|+++.+.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~ 110 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLA 110 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhc
Confidence 789999999999999999873 3456777877776543322111 1111222 234689999999886
No 130
>PRK05642 DNA replication initiation factor; Validated
Probab=98.22 E-value=6.7e-06 Score=83.61 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=40.5
Q ss_pred CceEEEcCCCchHHHHHHHHHhc---cCCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhhc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l~ 89 (640)
..++|+||+|+|||.|+++++.. .+...++++..++.... . .+...+.. .-++++|+++.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~----~-~~~~~~~~-~d~LiiDDi~~~~ 110 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG----P-ELLDNLEQ-YELVCLDDLDVIA 110 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh----H-HHHHhhhh-CCEEEEechhhhc
Confidence 45789999999999999999863 24556677666554221 1 11111222 2478899998775
No 131
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=5.5e-06 Score=93.51 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=31.9
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|... .+.+++ |.+|+.+..+.++++. .+.|..++.+-+..++
T Consensus 138 aLLK~LEep------p~~v~f-IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L 187 (546)
T PRK14957 138 ALLKTLEEP------PEYVKF-ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQL 187 (546)
T ss_pred HHHHHHhcC------CCCceE-EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHH
Confidence 455555542 235666 7777888889888765 8888888855555555
No 132
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.21 E-value=3.9e-06 Score=89.65 Aligned_cols=37 Identities=43% Similarity=0.688 Sum_probs=32.5
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchh
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF 57 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l 57 (640)
...++|.||||+|||++++.+|..++.+++.+.+..-
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~ 79 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPD 79 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCC
Confidence 4448999999999999999999999999998887643
No 133
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.2e-06 Score=85.62 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=54.9
Q ss_pred ccccccccccccccCcccCCceE--EEcCCCchHHHHHHHHHhccC-------CCeEEecCchhhhhhcc--chhhhHhh
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGAL--LLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEFIEMIGG--LGAARVRT 71 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiL--L~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l~~~~~~--~~~~~l~~ 71 (640)
+-.|++...+++++++.++++-+ |+||||||||||+|++..... .+.+.+++.++...... +..+++..
T Consensus 13 l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGM 92 (253)
T COG1117 13 LNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGM 92 (253)
T ss_pred eeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHhee
Confidence 44567888999999999999944 999999999999999988432 26678888888755333 33445666
Q ss_pred hhh
Q psy10020 72 EVV 74 (640)
Q Consensus 72 ~f~ 74 (640)
+||
T Consensus 93 VFQ 95 (253)
T COG1117 93 VFQ 95 (253)
T ss_pred ecc
Confidence 777
No 134
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=8e-07 Score=89.28 Aligned_cols=51 Identities=27% Similarity=0.541 Sum_probs=43.6
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEF 57 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l 57 (640)
+....+++++++++.+| +.|+||||||||||+|.||| .+..+.+.+++..+
T Consensus 13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v 67 (248)
T COG1116 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67 (248)
T ss_pred eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence 34478999999999999 45999999999999999999 45577888888766
No 135
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.20 E-value=4.7e-06 Score=84.75 Aligned_cols=63 Identities=30% Similarity=0.409 Sum_probs=46.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh--hcccccccchhhhhccch
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV--FLHCRVFLHEITIFDLET 92 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--~~p~il~ideid~l~~~r 92 (640)
+||+||||.|||||++.||.+++..+-..++.-+.+ .+. +-.++. ...-++||||+..+.+.-
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--~gD----laaiLt~Le~~DVLFIDEIHrl~~~v 119 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--PGD----LAAILTNLEEGDVLFIDEIHRLSPAV 119 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--hhh----HHHHHhcCCcCCeEEEehhhhcChhH
Confidence 889999999999999999999999888877765531 111 122222 445799999999887433
No 136
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=7.2e-06 Score=91.18 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=44.6
Q ss_pred CceEEEcCCCchHHHHHHHHHhc-----cCCCeEEecCchhhhhhccchh---hhHhhhhh--hcccccccchhhhhc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATE-----ANVPFLSMNGSEFIEMIGGLGA---ARVRTEVV--FLHCRVFLHEITIFD 89 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~-----~~~~~i~v~~~~l~~~~~~~~~---~~l~~~f~--~~p~il~ideid~l~ 89 (640)
.+++|+|++|+|||+|+++++.. .+..+++++..++......... ..+..... ....+|++||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc
Confidence 45889999999999999999883 3456677777776544322111 11111111 345689999998775
No 137
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.19 E-value=9.7e-07 Score=93.39 Aligned_cols=48 Identities=27% Similarity=0.627 Sum_probs=43.0
Q ss_pred cccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhh
Q psy10020 12 YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIE 59 (640)
Q Consensus 12 ~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~ 59 (640)
+++++++.+..| +.|+|||||||||++|+||| .+..+.+.+++.++..
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 899999999999 55999999999999999999 5568899999988764
No 138
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=8.4e-06 Score=92.78 Aligned_cols=47 Identities=9% Similarity=0.003 Sum_probs=32.4
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+.. ...+++ |.+||.+..+.+.|++ .+.|..++.+.+..+|
T Consensus 138 aLLk~LEEP------~~~~if-ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L 187 (624)
T PRK14959 138 ALLKTLEEP------PARVTF-VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHL 187 (624)
T ss_pred HHHHHhhcc------CCCEEE-EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHH
Confidence 455555442 235677 8889999999888776 7888877755555555
No 139
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=9.5e-06 Score=92.93 Aligned_cols=47 Identities=6% Similarity=-0.051 Sum_probs=32.9
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+.. .+.+++ |.+|+.++.|.+.++. .+.|..++.+-+..++
T Consensus 138 aLLk~LEep------p~~~~f-Il~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L 187 (576)
T PRK14965 138 ALLKTLEEP------PPHVKF-IFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRL 187 (576)
T ss_pred HHHHHHHcC------CCCeEE-EEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHH
Confidence 556666543 346777 8888999999999886 7888877744444445
No 140
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=9.5e-06 Score=92.82 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.3
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
++..+||+||+|+||||+++++|..+.+
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455789999999999999999986643
No 141
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=1.8e-05 Score=90.27 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=32.4
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+.. ...+++ |.+|+.++.|.+.+++ .+.|..|+.+-+..++
T Consensus 138 aLLKtLEep------p~~~if-Ilatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L 187 (559)
T PRK05563 138 ALLKTLEEP------PAHVIF-ILATTEPHKIPATILSRCQRFDFKRISVEDIVERL 187 (559)
T ss_pred HHHHHhcCC------CCCeEE-EEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHH
Confidence 455555542 335666 7778889999999876 7888888855455555
No 142
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.15 E-value=1.6e-05 Score=85.50 Aligned_cols=37 Identities=8% Similarity=-0.032 Sum_probs=27.2
Q ss_pred cceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 199 ELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 199 ~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
..+++ |.+||+++.+.+++.+ .+.|+.|+.+-+..++
T Consensus 146 ~~~~l-Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l 185 (355)
T TIGR02397 146 EHVVF-ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERL 185 (355)
T ss_pred cceeE-EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHH
Confidence 35666 7788999988888887 7788888755455555
No 143
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.13 E-value=2.7e-06 Score=80.25 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=54.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhhhccchhhhHhhhhhhcccccccc
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLH 83 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~id 83 (640)
.+..+++++++.+.+| ++|+||||||||||+|.+|. .+..+.+.+.|.++....+... +-+..+..|.+-+|-|
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~--Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAY--RQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHH--HHHHHHHHcCcccccc
Confidence 4568999999999999 67999999999999999998 4567889999888764333222 2223333444445555
Q ss_pred hh
Q psy10020 84 EI 85 (640)
Q Consensus 84 ei 85 (640)
-+
T Consensus 92 tV 93 (223)
T COG4619 92 TV 93 (223)
T ss_pred ch
Confidence 43
No 144
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.8e-06 Score=87.47 Aligned_cols=75 Identities=27% Similarity=0.402 Sum_probs=60.1
Q ss_pred cccCCc-eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh-hhhccchhhh-Hhhhhh--------hcccccccchhh
Q psy10020 18 AKVPKG-ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI-EMIGGLGAAR-VRTEVV--------FLHCRVFLHEIT 86 (640)
Q Consensus 18 l~~~~G-iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~-~~~~~~~~~~-l~~~f~--------~~p~il~ideid 86 (640)
+.+.+. +||+||.|||||.|+..||..++.||-.-+...+. ..|.|+...+ +-.+.+ -+..|++|||+|
T Consensus 93 vEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEID 172 (408)
T COG1219 93 VELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEID 172 (408)
T ss_pred eeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechh
Confidence 555544 99999999999999999999999999998888876 5677776544 444444 456899999999
Q ss_pred hhccch
Q psy10020 87 IFDLET 92 (640)
Q Consensus 87 ~l~~~r 92 (640)
.+..+.
T Consensus 173 KIarkS 178 (408)
T COG1219 173 KIARKS 178 (408)
T ss_pred hhhccC
Confidence 998554
No 145
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.5e-05 Score=87.55 Aligned_cols=27 Identities=37% Similarity=0.603 Sum_probs=22.8
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccC
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++..+||+||+|+||||+++.+|..+.
T Consensus 37 i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 37 VSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344478999999999999999999664
No 146
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.09 E-value=1.1e-05 Score=94.69 Aligned_cols=69 Identities=28% Similarity=0.459 Sum_probs=47.9
Q ss_pred CCc-eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhh-----hhccch--------hhhHhhhhh-hcccccccchh
Q psy10020 21 PKG-ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE-----MIGGLG--------AARVRTEVV-FLHCRVFLHEI 85 (640)
Q Consensus 21 ~~G-iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~-----~~~~~~--------~~~l~~~f~-~~p~il~idei 85 (640)
|.| ++|+||||||||++++.+|..++.+++.++++.+.. ...|.. ...+..... ...+++++||+
T Consensus 487 p~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEi 566 (758)
T PRK11034 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccH
Confidence 344 779999999999999999999999999888776532 111110 011222222 44589999999
Q ss_pred hhhc
Q psy10020 86 TIFD 89 (640)
Q Consensus 86 d~l~ 89 (640)
|.+.
T Consensus 567 eka~ 570 (758)
T PRK11034 567 EKAH 570 (758)
T ss_pred hhhh
Confidence 9875
No 147
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=2.8e-05 Score=88.65 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=33.5
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|... ...+++ |.+|+.++.|.++++. ++.|..++.+....++
T Consensus 137 ALLK~LEEp------p~~~~f-IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L 186 (584)
T PRK14952 137 ALLKIVEEP------PEHLIF-IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALI 186 (584)
T ss_pred HHHHHHhcC------CCCeEE-EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHH
Confidence 455555542 346777 8888999999999886 7888888755555555
No 148
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.09 E-value=2.9e-06 Score=85.11 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=48.6
Q ss_pred ccccccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhh
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIE 59 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~ 59 (640)
+.+.+.+..++++++++++.| ++|+|||||||||++|.|.+ ++..+.+.+++.++..
T Consensus 7 vsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~ 67 (309)
T COG1125 7 VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67 (309)
T ss_pred eehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence 344456789999999999999 44899999999999999998 5678899999988764
No 149
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=1.7e-05 Score=91.38 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=23.9
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
+...+||+||+|+|||++++++|..+.+
T Consensus 37 l~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 37 IAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 3456899999999999999999996654
No 150
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.08 E-value=4.3e-05 Score=88.18 Aligned_cols=37 Identities=41% Similarity=0.840 Sum_probs=29.4
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchh
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEF 57 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l 57 (640)
+..++|+|||||||||+++++.+.. +.+++.+++..+
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 4558999999999999999998633 356788887654
No 151
>PRK09087 hypothetical protein; Validated
Probab=98.07 E-value=8.4e-06 Score=82.44 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++|+||+|||||+|+++++...+
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~ 69 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSD 69 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999997654
No 152
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=1.9e-05 Score=85.69 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=23.9
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhccC
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
.++..++|+||+|+|||+++++++..+.
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456788999999999999999998654
No 153
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.04 E-value=4.4e-06 Score=83.52 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=58.0
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEIT 86 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid 86 (640)
.+++++++++.+| +-|+|+||||||||+|+|++ .+..+.+.+++..+...... ..|...--.+|.|..-
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~-------~~~~~~VQmVFQDp~~ 93 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRA-------KAFYRPVQMVFQDPYS 93 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccc-------hhhccceeEEecCCcc
Confidence 3999999999999 33999999999999999999 55678899988766432111 1233334567778888
Q ss_pred hhccchhhh
Q psy10020 87 IFDLETKII 95 (640)
Q Consensus 87 ~l~~~r~~~ 95 (640)
++.|++...
T Consensus 94 SLnP~~tv~ 102 (252)
T COG1124 94 SLNPRRTVG 102 (252)
T ss_pred ccCcchhHH
Confidence 888877643
No 154
>KOG0745|consensus
Probab=98.03 E-value=5e-06 Score=88.60 Aligned_cols=76 Identities=29% Similarity=0.414 Sum_probs=60.7
Q ss_pred CcccCC-ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh-hhhccchhh-hHhhhhh--------hcccccccchh
Q psy10020 17 GAKVPK-GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI-EMIGGLGAA-RVRTEVV--------FLHCRVFLHEI 85 (640)
Q Consensus 17 ~l~~~~-GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~-~~~~~~~~~-~l~~~f~--------~~p~il~idei 85 (640)
++.+.+ ++||.||+|||||.|++.||..++.|+...++..+. ..|+|+... .+..+++ .|..|+|+||+
T Consensus 221 dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 221 DVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred ceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 445544 499999999999999999999999999999999886 567776543 3455554 56789999999
Q ss_pred hhhccch
Q psy10020 86 TIFDLET 92 (640)
Q Consensus 86 d~l~~~r 92 (640)
|.+....
T Consensus 301 DKi~~~~ 307 (564)
T KOG0745|consen 301 DKITKKA 307 (564)
T ss_pred hhhcccC
Confidence 9998443
No 155
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=2.8e-05 Score=89.91 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=33.6
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+.. ...+++ |.+|+.++.|.+.+++ .+.|..|+.+.+..+|
T Consensus 137 ALLKtLEEP------P~~tif-ILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L 186 (725)
T PRK07133 137 ALLKTLEEP------PKHVIF-ILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRL 186 (725)
T ss_pred HHHHHhhcC------CCceEE-EEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHH
Confidence 455555542 336677 7888899999999876 8888888855555555
No 156
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=2.9e-05 Score=85.16 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=24.2
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
.++..++|+||+|+||||+++++|..+.+
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34556889999999999999999986644
No 157
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.01 E-value=2.5e-05 Score=80.65 Aligned_cols=47 Identities=11% Similarity=-0.027 Sum_probs=33.3
Q ss_pred hhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhh
Q psy10020 267 SFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIE 324 (640)
Q Consensus 267 ~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~ 324 (640)
+-.++.|++.|.|.... |..+|. .+...+...+...| +.+++ ..++.
T Consensus 218 ~~~~~~i~~~s~G~p~~-i~~l~~-------~~~~~a~~~~~~~i-~~~~v--~~~~~ 264 (269)
T TIGR03015 218 EGAFDAIHRFSRGIPRL-INILCD-------RLLLSAFLEEKREI-GGEEV--REVIA 264 (269)
T ss_pred HHHHHHHHHHcCCcccH-HHHHHH-------HHHHHHHHcCCCCC-CHHHH--HHHHH
Confidence 34678999999998655 988888 55555555555555 88888 55444
No 158
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.99 E-value=5.9e-06 Score=79.54 Aligned_cols=56 Identities=27% Similarity=0.491 Sum_probs=47.9
Q ss_pred ccccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhh
Q psy10020 5 DYLKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEM 60 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~ 60 (640)
.|...+++++++++++++| +.|+||||+|||||+|.|.+ .+..+.+.+++.++...
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l 69 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRL 69 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccc
Confidence 4555678999999999999 55899999999999999998 56788999999888643
No 159
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.99 E-value=4.3e-05 Score=90.21 Aligned_cols=69 Identities=35% Similarity=0.510 Sum_probs=47.5
Q ss_pred CCc-eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhh------------hccch-hhhHhhhhh-hcccccccchh
Q psy10020 21 PKG-ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM------------IGGLG-AARVRTEVV-FLHCRVFLHEI 85 (640)
Q Consensus 21 ~~G-iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~------------~~~~~-~~~l~~~f~-~~p~il~idei 85 (640)
|.| ++|+||+|||||+++++||..++.+++.++.+++... +.|.. ...+...+. ...+++++||+
T Consensus 483 p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEi 562 (731)
T TIGR02639 483 PVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEI 562 (731)
T ss_pred CceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEech
Confidence 444 6799999999999999999999988999887765421 11111 011222222 44589999999
Q ss_pred hhhc
Q psy10020 86 TIFD 89 (640)
Q Consensus 86 d~l~ 89 (640)
|.+.
T Consensus 563 eka~ 566 (731)
T TIGR02639 563 EKAH 566 (731)
T ss_pred hhcC
Confidence 8664
No 160
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=3.1e-05 Score=86.14 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=32.5
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.|+..|+.. .+.+++ |.+||++..|.+++++ .+.|..++.+-+..++
T Consensus 140 ~LLk~lEep------~~~~~~-Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L 189 (451)
T PRK06305 140 SLLKTLEEP------PQHVKF-FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKL 189 (451)
T ss_pred HHHHHhhcC------CCCceE-EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHH
Confidence 455555542 346667 7788999999999887 7888878744444455
No 161
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.98 E-value=8.2e-06 Score=73.70 Aligned_cols=71 Identities=34% Similarity=0.557 Sum_probs=47.2
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCC---eEEecCchhhhhh--------------ccchhhhHhhhhh----hcccccc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVP---FLSMNGSEFIEMI--------------GGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~---~i~v~~~~l~~~~--------------~~~~~~~l~~~f~----~~p~il~ 81 (640)
.++|+|||||||||+++.++..+... ++.++........ ........+..+. ..+.+++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 47899999999999999999977654 7777766433110 0111222223332 3459999
Q ss_pred cchhhhhccchh
Q psy10020 82 LHEITIFDLETK 93 (640)
Q Consensus 82 ideid~l~~~r~ 93 (640)
+||++.+.....
T Consensus 84 iDei~~~~~~~~ 95 (148)
T smart00382 84 LDEITSLLDAEQ 95 (148)
T ss_pred EECCcccCCHHH
Confidence 999999885443
No 162
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.98 E-value=7e-06 Score=78.64 Aligned_cols=80 Identities=19% Similarity=0.115 Sum_probs=54.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhhhh--------hc-------cchhhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFIEM--------IG-------GLGAAR 68 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~~~--------~~-------~~~~~~ 68 (640)
.+..+++++++.+++| +.|+||||||||||+++|++.. ..+.+.+++.++... .. +...++
T Consensus 11 ~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qr 90 (163)
T cd03216 11 GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQM 90 (163)
T ss_pred CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHH
Confidence 3446899999999999 5599999999999999999953 466777766543210 00 001111
Q ss_pred --Hhhhhhhcccccccchhhh
Q psy10020 69 --VRTEVVFLHCRVFLHEITI 87 (640)
Q Consensus 69 --l~~~f~~~p~il~ideid~ 87 (640)
+...+...|.++++||...
T Consensus 91 l~laral~~~p~illlDEP~~ 111 (163)
T cd03216 91 VEIARALARNARLLILDEPTA 111 (163)
T ss_pred HHHHHHHhcCCCEEEEECCCc
Confidence 2223347889999999754
No 163
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.97 E-value=7.2e-06 Score=82.12 Aligned_cols=50 Identities=20% Similarity=0.442 Sum_probs=43.0
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIE 59 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~ 59 (640)
..+++++++.+++| +.|+||||||||||+++|++ .+..+.+.+.+.++..
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~ 71 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTK 71 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCc
Confidence 36899999999999 55999999999999999998 5567888998877653
No 164
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=3.3e-05 Score=88.00 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=33.5
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..++.. ...+++ |.+|+.++.|.++++. .+.|..|+.+-+..++
T Consensus 138 aLLK~LEep------p~~~vf-I~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L 187 (563)
T PRK06647 138 ALLKTIEEP------PPYIVF-IFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNML 187 (563)
T ss_pred HHHHhhccC------CCCEEE-EEecCChHHhHHHHHHhceEEEecCCCHHHHHHHH
Confidence 555555542 346677 7888889999998877 6888888865556666
No 165
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.96 E-value=7.5e-06 Score=81.64 Aligned_cols=55 Identities=18% Similarity=0.401 Sum_probs=47.2
Q ss_pred ccccccccccccCcccCCceE--EEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhh
Q psy10020 5 DYLKRPEYYQNLGAKVPKGAL--LLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIE 59 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiL--L~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~ 59 (640)
.-+++..+++++++++++|-+ ++||||||||||+|+|.+ .+..+.+.+.+.++..
T Consensus 16 ~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ 74 (263)
T COG1127 16 KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74 (263)
T ss_pred eecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhc
Confidence 335778999999999999933 899999999999999999 4567899999988763
No 166
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.93 E-value=3.3e-05 Score=84.59 Aligned_cols=26 Identities=42% Similarity=0.708 Sum_probs=22.7
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccC
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
.+.++|+||||||||++++.+|..+.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 45699999999999999999998653
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=4.9e-05 Score=81.08 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=36.7
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|..- .+++++ |.+|++++.|.|.++. .+.|+.|+.+....+|
T Consensus 125 aLLK~LEEP------p~~~~f-iL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 125 ALLKSLEEP------SGDTVL-LLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred HHHHHHhCC------CCCeEE-EEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 666666552 346777 8899999999999987 8899999866666666
No 168
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.92 E-value=2.1e-05 Score=76.19 Aligned_cols=86 Identities=16% Similarity=0.313 Sum_probs=61.6
Q ss_pred cccccccccccccCcccCCceE--EEcCCCchHHHHHHHHHhc--cCCCeEEecCchhhhhhccchhhhHhhhhh--hcc
Q psy10020 4 VDYLKRPEYYQNLGAKVPKGAL--LLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFIEMIGGLGAARVRTEVV--FLH 77 (640)
Q Consensus 4 v~~l~~~~~l~~l~l~~~~GiL--L~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--~~p 77 (640)
...++...+++++++.+|+|-+ |+||+|+|||||+..++.. .+.+.+.+++.++.+......++.+..+-+ +-.
T Consensus 8 ~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 8 SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 3445677899999999999944 9999999999999999984 457889999988875444444444444433 222
Q ss_pred cccccchhhhhc
Q psy10020 78 CRVFLHEITIFD 89 (640)
Q Consensus 78 ~il~ideid~l~ 89 (640)
+-+-..++-.|+
T Consensus 88 ~rlTV~dLv~FG 99 (252)
T COG4604 88 SRLTVRDLVGFG 99 (252)
T ss_pred heeEHHHHhhcC
Confidence 445556666665
No 169
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7.4e-06 Score=81.17 Aligned_cols=59 Identities=20% Similarity=0.412 Sum_probs=48.5
Q ss_pred ccc-cccccccCcccCCceE--EEcCCCchHHHHHHHHHhccC----CCeEEecCchhhhhhccch
Q psy10020 7 LKR-PEYYQNLGAKVPKGAL--LLGPPGCGKTLLAKAVATEAN----VPFLSMNGSEFIEMIGGLG 65 (640)
Q Consensus 7 l~~-~~~l~~l~l~~~~GiL--L~Gp~GsGKTtL~r~la~~~~----~~~i~v~~~~l~~~~~~~~ 65 (640)
..+ .++++.+|+.+..|.+ |.||||||||||+++|++.++ .+-+.+++.++....+.+.
T Consensus 13 v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ER 78 (251)
T COG0396 13 VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78 (251)
T ss_pred ecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHH
Confidence 344 4899999999999944 999999999999999999665 4678899998876655443
No 170
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.91 E-value=8.5e-06 Score=76.46 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=53.4
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh----hhhccchhhh--Hhhhhhhccc
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI----EMIGGLGAAR--VRTEVVFLHC 78 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~----~~~~~~~~~~--l~~~f~~~p~ 78 (640)
...+++++++.+.+| +.|.||||+|||||+++|++.. ..+.+.+++.... ....|+ .++ +...+...|.
T Consensus 12 ~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~-~~rv~laral~~~p~ 90 (144)
T cd03221 12 GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGE-KMRLALAKLLLENPN 90 (144)
T ss_pred CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHH-HHHHHHHHHHhcCCC
Confidence 346899999999999 4599999999999999999954 4565665543111 111121 222 3344458889
Q ss_pred ccccchhhh
Q psy10020 79 RVFLHEITI 87 (640)
Q Consensus 79 il~ideid~ 87 (640)
++++||...
T Consensus 91 illlDEP~~ 99 (144)
T cd03221 91 LLLLDEPTN 99 (144)
T ss_pred EEEEeCCcc
Confidence 999999754
No 171
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=5e-05 Score=87.19 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=24.7
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
.++..+||+||+|+||||+++++|..+.+
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45566889999999999999999996654
No 172
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.90 E-value=5.2e-05 Score=80.12 Aligned_cols=23 Identities=52% Similarity=0.710 Sum_probs=20.9
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.++|+||+|||||+++++++..+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999864
No 173
>KOG0058|consensus
Probab=97.90 E-value=2.6e-05 Score=88.44 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=42.6
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~ 58 (640)
.+++++++++++| +.|+||||+||||++..|-. .+..+.+.+++.++.
T Consensus 482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPIS 533 (716)
T ss_pred hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehh
Confidence 5999999999999 55999999999999999988 556788999998875
No 174
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.88 E-value=1.4e-05 Score=79.54 Aligned_cols=55 Identities=18% Similarity=0.428 Sum_probs=45.8
Q ss_pred cccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhhhh
Q psy10020 6 YLKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFIEM 60 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~~~ 60 (640)
|.+....++++++.++.| +.|+||||+|||||+|+|++. +..+.+.+++.++...
T Consensus 13 yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 13 YPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL 71 (258)
T ss_pred cCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhcc
Confidence 336678999999999999 559999999999999999994 4467888888776643
No 175
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.88 E-value=9.8e-06 Score=83.43 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=43.8
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFI 58 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~ 58 (640)
+.....+.++++.++.| +.|.|||||||||++|+||| .+..+.+.+++..+.
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~ 67 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLF 67 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEecc
Confidence 45567788999999999 44999999999999999999 556889999998444
No 176
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=7e-05 Score=86.17 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccC
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+..+||+||+|+||||+++++|..+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33478999999999999999998654
No 177
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.84 E-value=1.9e-05 Score=76.84 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=52.3
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh---hh--hccchhhh--Hhhhhhh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI---EM--IGGLGAAR--VRTEVVF 75 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~---~~--~~~~~~~~--l~~~f~~ 75 (640)
++...++.+. +.+++| +.|+||||+|||||+++|++. +..+.+.+++..+. .. ..+...++ +...+..
T Consensus 10 ~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~ 88 (177)
T cd03222 10 YGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLR 88 (177)
T ss_pred ECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhc
Confidence 3445666664 788888 449999999999999999994 44677777664321 10 11111222 3334447
Q ss_pred cccccccchhhh
Q psy10020 76 LHCRVFLHEITI 87 (640)
Q Consensus 76 ~p~il~ideid~ 87 (640)
.|.++++||...
T Consensus 89 ~p~lllLDEPts 100 (177)
T cd03222 89 NATFYLFDEPSA 100 (177)
T ss_pred CCCEEEEECCcc
Confidence 889999999754
No 178
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.84 E-value=1.4e-05 Score=78.29 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
++..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 56 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL 56 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEc
Confidence 4457899999999999 4499999999999999999954 467777777654
No 179
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=1.8e-05 Score=75.14 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=54.4
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhhh---------------hhccchhhh--
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFIE---------------MIGGLGAAR-- 68 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~~---------------~~~~~~~~~-- 68 (640)
..+++++++.+++| +.|+||||+|||||+++|++.. ..+.+.+++..+.. ...|+ .++
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~ 90 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVA 90 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHH
Confidence 46899999999998 5599999999999999999954 35667776654321 11121 222
Q ss_pred Hhhhhhhcccccccchhhhh
Q psy10020 69 VRTEVVFLHCRVFLHEITIF 88 (640)
Q Consensus 69 l~~~f~~~p~il~ideid~l 88 (640)
+...+..+|.++++||...=
T Consensus 91 l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 91 LARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred HHHHHhcCCCEEEEeCCCcC
Confidence 23334477899999997643
No 180
>KOG1969|consensus
Probab=97.83 E-value=7.8e-05 Score=84.26 Aligned_cols=64 Identities=28% Similarity=0.358 Sum_probs=46.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh--------hcccccccchhhhhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV--------FLHCRVFLHEITIFD 89 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--------~~p~il~ideid~l~ 89 (640)
.||+||||-||||||+.||...|+.++.++.++-.... ....++..+.+ .+|..+++||||--.
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 56999999999999999999999999999998743211 11112222221 678889999998543
No 181
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=1.2e-05 Score=77.76 Aligned_cols=48 Identities=27% Similarity=0.561 Sum_probs=41.7
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~ 58 (640)
.+++++++.+.+| +++.||||||||||++.+|+ .+..+.+.+++..+.
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~ 70 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc
Confidence 5899999999999 55889999999999999999 455788888887765
No 182
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.0001 Score=83.08 Aligned_cols=82 Identities=9% Similarity=0.023 Sum_probs=48.9
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccc
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEG 259 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (640)
.||..|.... +.+.+ |.+|+.+..|.++++. ++.|..++.+-+..++ ..+... +|
T Consensus 136 ALLK~LEEpp------~~t~F-IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L-~~Il~~--------------EG 193 (535)
T PRK08451 136 ALLKTLEEPP------SYVKF-ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHL-KTILEK--------------EG 193 (535)
T ss_pred HHHHHHhhcC------CceEE-EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHH-HHHHHH--------------cC
Confidence 4555555432 34556 6677888999999887 8888888855555556 333220 11
Q ss_pred cCCCCcchhcHHHHHhhCCCCCccchhhhhh
Q psy10020 260 RNLNIPASFKMMKKQNFLPQTSTASNVNQSH 290 (640)
Q Consensus 260 ~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~ 290 (640)
+.+ .+-.+..|+..+.| +.+++.+++.
T Consensus 194 --i~i-~~~Al~~Ia~~s~G-dlR~alnlLd 220 (535)
T PRK08451 194 --VSY-EPEALEILARSGNG-SLRDTLTLLD 220 (535)
T ss_pred --CCC-CHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 111 23456778887765 4555555544
No 183
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.81 E-value=1.6e-05 Score=79.51 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=41.3
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 69 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIS 69 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehh
Confidence 46899999999999 4599999999999999999954 4677888776553
No 184
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.80 E-value=1.7e-05 Score=78.84 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=48.8
Q ss_pred ccccccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC--CCeEEecCchhhhh
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN--VPFLSMNGSEFIEM 60 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~~~l~~~ 60 (640)
+..+++..++++++++.+++| +.|+||||+||||++|+|++... .+.+.+.+.++...
T Consensus 9 l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~ 70 (237)
T COG0410 9 LSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL 70 (237)
T ss_pred EeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC
Confidence 344567789999999999999 44999999999999999999554 58899999988643
No 185
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=7.6e-05 Score=85.53 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=24.6
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
.++..+||+||+|+||||+++++|..+.+
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 34566899999999999999999996654
No 186
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.80 E-value=2e-05 Score=76.64 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|.||||+|||||+++|++. +..+.+.+++.++
T Consensus 10 ~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~ 63 (180)
T cd03214 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL 63 (180)
T ss_pred CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 3456899999999999 559999999999999999995 4567788877655
No 187
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.78 E-value=2.3e-05 Score=78.16 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++++++| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 10 ~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 63 (213)
T cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL 63 (213)
T ss_pred CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccH
Confidence 3456899999999999 559999999999999999995 3467788877654
No 188
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.77 E-value=2.2e-05 Score=77.90 Aligned_cols=48 Identities=31% Similarity=0.402 Sum_probs=40.8
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
..+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 64 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI 64 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh
Confidence 56899999999999 559999999999999999994 4567777777655
No 189
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.77 E-value=2.3e-05 Score=79.80 Aligned_cols=50 Identities=18% Similarity=0.450 Sum_probs=41.8
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT 67 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh
Confidence 456999999999999 5599999999999999999954 4677888776553
No 190
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.77 E-value=1.6e-05 Score=80.61 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=52.3
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhhh-hhccchhhhHhhhhhhcccccccc
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFIE-MIGGLGAARVRTEVVFLHCRVFLH 83 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~~-~~~~~~~~~l~~~f~~~p~il~id 83 (640)
..+++++++.+++| ++|+||||||||||++.+++. +..+.+.+++.++.. .......+++..+||+....+|-+
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 47899999999999 669999999999999999994 446788888876542 222233344555566544444433
No 191
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=2.1e-05 Score=79.80 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 64 (235)
T cd03261 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI 64 (235)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 3456899999999999 5599999999999999999954 467777877654
No 192
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=2.2e-05 Score=78.12 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 11 ~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (210)
T cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL 64 (210)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCch
Confidence 3456899999999999 459999999999999999995 3467778877655
No 193
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.75 E-value=2.2e-05 Score=78.23 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~ 64 (213)
T cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV 64 (213)
T ss_pred CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 4457899999999999 5599999999999999999953 467777777654
No 194
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=2.4e-05 Score=78.03 Aligned_cols=50 Identities=30% Similarity=0.507 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 64 (213)
T cd03259 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV 64 (213)
T ss_pred CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 3456899999999999 5599999999999999999953 467777777654
No 195
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.74 E-value=1.8e-05 Score=79.85 Aligned_cols=50 Identities=30% Similarity=0.537 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++++++| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 71 (225)
T PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDI 71 (225)
T ss_pred CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEc
Confidence 3456999999999999 559999999999999999994 4567777777654
No 196
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.73 E-value=2.7e-05 Score=77.58 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 11 ~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (213)
T cd03262 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKL 64 (213)
T ss_pred CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 3456899999999999 5599999999999999999954 567788877654
No 197
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.72 E-value=2.8e-05 Score=79.12 Aligned_cols=51 Identities=25% Similarity=0.431 Sum_probs=41.4
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEF 57 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l 57 (640)
+.+..+++++++++++| +.|+||||+|||||+|+|.+ .+..+.+.+.+...
T Consensus 14 y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~ 68 (254)
T COG1121 14 YGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPV 68 (254)
T ss_pred ECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccc
Confidence 34336999999999999 44999999999999999999 34567788776654
No 198
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.72 E-value=2.9e-05 Score=76.99 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=41.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 9 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 62 (206)
T TIGR03608 9 GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKET 62 (206)
T ss_pred CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 4457999999999999 4599999999999999999954 457777777654
No 199
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=2.8e-05 Score=79.00 Aligned_cols=49 Identities=18% Similarity=0.416 Sum_probs=41.2
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 66 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDIN 66 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecc
Confidence 56899999999999 4599999999999999999954 4677888776543
No 200
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.72 E-value=2.9e-05 Score=77.32 Aligned_cols=48 Identities=21% Similarity=0.443 Sum_probs=40.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
..+++++++++++| +.|+||||+|||||+++|++. +..+.+.+++.++
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 65 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL 65 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEc
Confidence 56899999999999 459999999999999999995 3467788877654
No 201
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.71 E-value=2.9e-05 Score=77.93 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=41.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 64 (222)
T cd03224 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI 64 (222)
T ss_pred CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 3446899999999999 5599999999999999999954 467788877654
No 202
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.71 E-value=3e-05 Score=78.88 Aligned_cols=50 Identities=26% Similarity=0.511 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc----cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE----ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~----~~~~~i~v~~~~l 57 (640)
....+++++++.+++| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 66 (243)
T TIGR01978 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL 66 (243)
T ss_pred CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEec
Confidence 3457899999999999 559999999999999999996 3467778877654
No 203
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.71 E-value=2.9e-05 Score=78.70 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=41.2
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 64 (236)
T cd03219 11 GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDI 64 (236)
T ss_pred CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEEC
Confidence 3456899999999999 4599999999999999999954 467777777654
No 204
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.71 E-value=3.1e-05 Score=77.63 Aligned_cols=48 Identities=31% Similarity=0.326 Sum_probs=40.8
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
..+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI 66 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 56899999999999 559999999999999999995 4467777877654
No 205
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=2.8e-05 Score=78.06 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=40.2
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
..+++++++.+++| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 68 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV 68 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 46899999999999 4599999999999999999953 467777776554
No 206
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.71 E-value=3.2e-05 Score=77.21 Aligned_cols=50 Identities=24% Similarity=0.372 Sum_probs=41.5
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN 67 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 356899999999999 5599999999999999999954 4677777776553
No 207
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=3.2e-05 Score=78.32 Aligned_cols=48 Identities=21% Similarity=0.428 Sum_probs=40.8
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
.+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 70 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLT 70 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 6899999999999 5599999999999999999954 4677888776653
No 208
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=3e-05 Score=78.91 Aligned_cols=50 Identities=26% Similarity=0.435 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+..+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 13 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (239)
T cd03296 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA 66 (239)
T ss_pred CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 4457999999999999 5599999999999999999954 467777777654
No 209
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.70 E-value=3.2e-05 Score=78.17 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 64 (232)
T cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI 64 (232)
T ss_pred CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 4456899999999999 559999999999999999995 3467788877654
No 210
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=3.2e-05 Score=77.60 Aligned_cols=50 Identities=28% Similarity=0.351 Sum_probs=41.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+..+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 64 (220)
T cd03265 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV 64 (220)
T ss_pred CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 4457999999999999 559999999999999999995 3467777777554
No 211
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=3.2e-05 Score=79.67 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+..+++++++.+++| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 12 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 65 (255)
T PRK11248 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65 (255)
T ss_pred CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 3456899999999999 5599999999999999999953 467777777654
No 212
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=3.3e-05 Score=75.02 Aligned_cols=50 Identities=22% Similarity=0.478 Sum_probs=41.0
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 11 ~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (178)
T cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDL 64 (178)
T ss_pred CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 3456899999999999 4499999999999999999954 356777777654
No 213
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.69 E-value=3.6e-05 Score=76.18 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=41.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~ 65 (200)
T PRK13540 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65 (200)
T ss_pred CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcc
Confidence 4457999999999999 559999999999999999995 4467778877655
No 214
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.69 E-value=4.2e-05 Score=75.01 Aligned_cols=56 Identities=25% Similarity=0.400 Sum_probs=46.5
Q ss_pred ccccccccccCcccCCceE--EEcCCCchHHHHHHHHHhccC--CCeEEecCchhhhhhc
Q psy10020 7 LKRPEYYQNLGAKVPKGAL--LLGPPGCGKTLLAKAVATEAN--VPFLSMNGSEFIEMIG 62 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiL--L~Gp~GsGKTtL~r~la~~~~--~~~i~v~~~~l~~~~~ 62 (640)
+..+.+++++++++..|.. |+||||+|||||+|+|++++. .+.+.+++..+.++..
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCH
Confidence 5567899999999999933 999999999999999999654 6788888887765443
No 215
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=3.5e-05 Score=76.79 Aligned_cols=50 Identities=26% Similarity=0.460 Sum_probs=41.1
Q ss_pred cccccccccCcccCCceE-EEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKGAL-LLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~GiL-L~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++++.+|++ |+||||||||||+++|++. +..+.+.+++.++
T Consensus 11 ~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 63 (211)
T cd03264 11 GKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV 63 (211)
T ss_pred CCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCcc
Confidence 344689999999999944 8999999999999999994 3467788877654
No 216
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.68 E-value=3.5e-05 Score=77.82 Aligned_cols=50 Identities=26% Similarity=0.460 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (230)
T TIGR03410 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDI 64 (230)
T ss_pred CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence 3456899999999999 5599999999999999999954 467788877654
No 217
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.68 E-value=3.4e-05 Score=76.94 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=40.5
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 65 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDV 65 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence 46999999999999 4599999999999999999953 467777777654
No 218
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=4.2e-05 Score=73.72 Aligned_cols=50 Identities=22% Similarity=0.384 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l 57 (640)
....+|.+++|.+..| +.+.||||+|||||+|.||+ .+..+.+.+++..+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i 66 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPI 66 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCC
Confidence 3457999999999999 44889999999999999999 45567788776554
No 219
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.66 E-value=4.1e-05 Score=77.05 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=40.3
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+++++++++++| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 69 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDL 69 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 6899999999999 559999999999999999995 3567778877654
No 220
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=3.2e-05 Score=78.03 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=41.3
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++..+.
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 68 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR 68 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHH
Confidence 35899999999999 5599999999999999999954 4677888776553
No 221
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.66 E-value=3.6e-05 Score=78.16 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+..+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i 65 (236)
T TIGR03864 12 GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDL 65 (236)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc
Confidence 3457899999999999 559999999999999999995 4567788877654
No 222
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.66 E-value=0.00022 Score=72.03 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=40.4
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhhHhhhhh-hcccccccchhh
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAARVRTEVV-FLHCRVFLHEIT 86 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~l~~~f~-~~p~il~ideid 86 (640)
...+||+|++|||||+++|++...+ +.-++.+...++.. ....+..+-. ....|||+|++.
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~-----l~~l~~~l~~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD-----LPELLDLLRDRPYKFILFCDDLS 116 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc-----HHHHHHHHhcCCCCEEEEecCCC
Confidence 4459999999999999999999844 34566666555531 1112222111 456899999853
No 223
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=3.9e-05 Score=78.23 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=42.2
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
....+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++.
T Consensus 14 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 68 (241)
T PRK14250 14 FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIK 68 (241)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence 3456899999999999 559999999999999999995 45677888776653
No 224
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=3.7e-05 Score=78.89 Aligned_cols=50 Identities=22% Similarity=0.438 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||||||||+++|++... .+.+.+++.++
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 3456899999999999 44999999999999999999643 67788877655
No 225
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.65 E-value=2.1e-05 Score=84.95 Aligned_cols=52 Identities=13% Similarity=0.283 Sum_probs=43.9
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
++...+++++++++++| +.|+||||||||||+++|++. +..+.+.+++.++.
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~ 58 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM 58 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 34567899999999999 449999999999999999994 45688888887765
No 226
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=3.9e-05 Score=78.20 Aligned_cols=50 Identities=26% Similarity=0.488 Sum_probs=41.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 13 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (242)
T PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 3457999999999999 5599999999999999999954 467788877654
No 227
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.65 E-value=4.2e-05 Score=76.00 Aligned_cols=50 Identities=24% Similarity=0.427 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+..+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 11 ~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 64 (208)
T cd03268 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY 64 (208)
T ss_pred CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcc
Confidence 3457999999999999 559999999999999999995 3467788877654
No 228
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00013 Score=77.19 Aligned_cols=27 Identities=48% Similarity=0.739 Sum_probs=23.1
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccC
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
.+..+||+||||+|||+++.++|..+.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 444688999999999999999999654
No 229
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.65 E-value=2.2e-05 Score=72.30 Aligned_cols=46 Identities=28% Similarity=0.504 Sum_probs=37.4
Q ss_pred ccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 13 YQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 13 l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
++++++.+++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~ 50 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDIS 50 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccc
Confidence 46788899998 5599999999999999999954 4567777776654
No 230
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=3.7e-05 Score=79.78 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=41.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
+...+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~ 88 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDI 88 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 4556899999999999 5599999999999999999954 467788877654
No 231
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.65 E-value=3.9e-05 Score=76.70 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=41.2
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT 68 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh
Confidence 35899999999999 4599999999999999999954 4677888877653
No 232
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=4.3e-05 Score=73.85 Aligned_cols=49 Identities=29% Similarity=0.423 Sum_probs=40.9
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
...+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 12 ~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~ 64 (173)
T cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI 64 (173)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 346899999999999 559999999999999999995 3567777777654
No 233
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.64 E-value=4.3e-05 Score=76.47 Aligned_cols=47 Identities=28% Similarity=0.434 Sum_probs=40.2
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 69 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV 69 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEc
Confidence 6899999999999 5599999999999999999953 467777877655
No 234
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.64 E-value=7e-05 Score=82.74 Aligned_cols=23 Identities=39% Similarity=0.746 Sum_probs=21.0
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++|.||||||||+++++|+...+
T Consensus 42 VLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 42 VFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred EEEECCCChhHHHHHHHHHHHhc
Confidence 89999999999999999998543
No 235
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.64 E-value=4.6e-05 Score=75.62 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=41.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++++++| +.|.||||||||||+++|++. +..+.+.+++.++
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~ 65 (204)
T PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI 65 (204)
T ss_pred CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence 3456899999999999 559999999999999999994 3467777777654
No 236
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.64 E-value=3.9e-05 Score=78.04 Aligned_cols=51 Identities=20% Similarity=0.419 Sum_probs=42.1
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
.+..+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 66 (240)
T PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN 66 (240)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 4457899999999999 4499999999999999999954 4677888776553
No 237
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=4.3e-05 Score=78.25 Aligned_cols=50 Identities=20% Similarity=0.435 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
.+..+++++++++++| +.|+||||||||||+++|++... .+.+.+++.++
T Consensus 14 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 72 (250)
T PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI 72 (250)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEEC
Confidence 3456899999999999 55999999999999999999642 67777777654
No 238
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.64 E-value=4.5e-05 Score=78.08 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (250)
T PRK11264 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI 67 (250)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 4457999999999999 5599999999999999999954 457777777654
No 239
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.63 E-value=4.2e-05 Score=77.10 Aligned_cols=51 Identities=24% Similarity=0.546 Sum_probs=41.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~ 58 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 70 (227)
T cd03260 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70 (227)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh
Confidence 3456899999999999 4599999999999999999965 3567777776553
No 240
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=4.6e-05 Score=77.57 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++++| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 14 ~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (241)
T PRK10895 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI 67 (241)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 3457899999999999 5599999999999999999953 467778877654
No 241
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.63 E-value=4.7e-05 Score=74.79 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=66.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhhhccchhhhHhhhhhhcc----cccc
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLH----CRVF 81 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p----~il~ 81 (640)
..++..++++++.| +.++|.||+|||||+++||+ .+..+.+.+++.++........+..+..+||..- .-+-
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 57899999999999 45899999999999999999 4568999999999987776677777888888211 2355
Q ss_pred cchhhhhccchh
Q psy10020 82 LHEITIFDLETK 93 (640)
Q Consensus 82 ideid~l~~~r~ 93 (640)
+.|.-.++..|+
T Consensus 99 ieENl~la~~Rg 110 (263)
T COG1101 99 IEENLALAESRG 110 (263)
T ss_pred HHHHHHHHHhcC
Confidence 666666666664
No 242
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.63 E-value=4.7e-05 Score=76.36 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=41.1
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS 70 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence 35899999999999 4499999999999999999953 4677888776654
No 243
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=4.5e-05 Score=78.31 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=41.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++... .+.+.+++.++
T Consensus 18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (254)
T PRK14273 18 TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNI 76 (254)
T ss_pred CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEec
Confidence 4456899999999999 44999999999999999999543 56777877654
No 244
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=3.9e-05 Score=73.99 Aligned_cols=47 Identities=19% Similarity=0.401 Sum_probs=39.7
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+++++++++++| +.|.||||+|||||+++|++.. ..+.+.+++..+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~ 66 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL 66 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh
Confidence 6899999999999 5599999999999999999954 456777777654
No 245
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.62 E-value=4.8e-05 Score=75.73 Aligned_cols=50 Identities=24% Similarity=0.444 Sum_probs=41.1
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++++++| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 13 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (207)
T PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66 (207)
T ss_pred CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeC
Confidence 4456899999999999 459999999999999999995 3467777776543
No 246
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.62 E-value=3.7e-05 Score=79.53 Aligned_cols=50 Identities=24% Similarity=0.547 Sum_probs=41.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+..+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 18 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 71 (265)
T PRK10253 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71 (265)
T ss_pred CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEh
Confidence 4457999999999999 5599999999999999999954 467777877655
No 247
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.62 E-value=1.2e-05 Score=80.47 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=48.7
Q ss_pred ccccccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhhh
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEMI 61 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~~ 61 (640)
+...++.-.+++++++++.+| +.|+||||+||||+.++|.+ .+..+.+.+.+.++....
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~ 72 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP 72 (250)
T ss_pred ceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCC
Confidence 344556678899999999999 44999999999999999999 456789999999886443
No 248
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=4.6e-05 Score=79.16 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=41.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 12 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 65 (271)
T PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65 (271)
T ss_pred CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEc
Confidence 3456999999999999 5599999999999999999954 467788877665
No 249
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.61 E-value=3.8e-05 Score=74.21 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=40.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
..+++++++.+++| +.|+||||+|||||+++|++. +..+.+.+++.++.
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS 67 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc
Confidence 35899999999999 559999999999999999995 34677888776553
No 250
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.61 E-value=5.1e-05 Score=75.95 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=41.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i 75 (214)
T PRK13543 22 NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA 75 (214)
T ss_pred CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc
Confidence 3456899999999999 559999999999999999994 3467777777654
No 251
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.61 E-value=4.9e-05 Score=75.01 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||+|||||+++|++. +..+.+.+++.++
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (198)
T TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL 64 (198)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc
Confidence 4457899999999999 559999999999999999995 3466777777654
No 252
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=4.5e-05 Score=82.22 Aligned_cols=51 Identities=29% Similarity=0.507 Sum_probs=42.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
....+++++++++.+| +.|+||||||||||+|+|++. +..+.+.+++.++.
T Consensus 17 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~ 71 (351)
T PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT 71 (351)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC
Confidence 4456899999999999 459999999999999999994 45788888887664
No 253
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.61 E-value=4.9e-05 Score=78.36 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 13 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~ 66 (258)
T PRK13548 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL 66 (258)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence 4457999999999999 459999999999999999995 3467777777654
No 254
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.61 E-value=3.7e-05 Score=79.99 Aligned_cols=51 Identities=27% Similarity=0.475 Sum_probs=41.8
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC----------CCeEEecCchh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN----------VPFLSMNGSEF 57 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~----------~~~i~v~~~~l 57 (640)
+.+..+++++++.+.+| +.|+||||||||||+++|++... .+.+.+++..+
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEc
Confidence 34567999999999999 55999999999999999999542 56777777654
No 255
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.61 E-value=4.6e-05 Score=79.06 Aligned_cols=50 Identities=24% Similarity=0.524 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 18 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (269)
T PRK11831 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENI 71 (269)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 3456899999999999 5599999999999999999954 467777777654
No 256
>PRK09183 transposase/IS protein; Provisional
Probab=97.61 E-value=9.8e-05 Score=76.27 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=41.2
Q ss_pred ceEEEcCCCchHHHHHHHHHhc---cCCCeEEecCchhhhhhcc-chhhhHhhhhh---hcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGSEFIEMIGG-LGAARVRTEVV---FLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~~l~~~~~~-~~~~~l~~~f~---~~p~il~ideid~l~ 89 (640)
+++|+||||||||+|+.+|+.. .+..+..++..++...... .....+...++ ..+.++++||+....
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLP 177 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCC
Confidence 3789999999999999999764 3445556665555422211 01111222332 456789999996543
No 257
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.60 E-value=4.9e-05 Score=77.95 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 64 (252)
T TIGR03005 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQL 64 (252)
T ss_pred CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 3457899999999999 5599999999999999999953 467777777655
No 258
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00026 Score=76.60 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=29.8
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCC-----CeEEecCchh
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANV-----PFLSMNGSEF 57 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~-----~~i~v~~~~l 57 (640)
.|.+++++||||||||.+++-++.++.. .++.++|...
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC
Confidence 3556899999999999999999985532 2788887654
No 259
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.60 E-value=5.2e-05 Score=77.21 Aligned_cols=50 Identities=20% Similarity=0.420 Sum_probs=41.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||+|||||+++|++. +..+.+.+++.++
T Consensus 13 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 66 (242)
T TIGR03411 13 DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL 66 (242)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec
Confidence 3456899999999999 449999999999999999995 4567788877654
No 260
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.60 E-value=8.8e-05 Score=67.64 Aligned_cols=68 Identities=28% Similarity=0.280 Sum_probs=36.1
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCc-hhh-hhhccchhhhH-hhhhh--hc---ccccccchhhhhccc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGS-EFI-EMIGGLGAARV-RTEVV--FL---HCRVFLHEITIFDLE 91 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~-~l~-~~~~~~~~~~l-~~~f~--~~---p~il~ideid~l~~~ 91 (640)
+||.|+||+|||++++++|...+..+..+.+. ++. ++..|...... ...|. .. ..++++||+....++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappk 77 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPK 77 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HH
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHH
Confidence 68999999999999999999999888777654 232 22222211110 11222 11 247889998765533
No 261
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.60 E-value=5.5e-05 Score=73.42 Aligned_cols=48 Identities=23% Similarity=0.433 Sum_probs=40.7
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+++++++++++| +.|.||||||||||+++|++. +..+.+.+++..+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS 67 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH
Confidence 5899999999999 559999999999999999995 34677888776553
No 262
>PRK10908 cell division protein FtsE; Provisional
Probab=97.60 E-value=5e-05 Score=76.31 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=41.1
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
...+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 66 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI 66 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 357899999999999 5599999999999999999954 467777777655
No 263
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.60 E-value=4.8e-05 Score=78.01 Aligned_cols=50 Identities=16% Similarity=0.395 Sum_probs=41.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
.+..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 17 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 3456899999999999 5599999999999999999853 357778877654
No 264
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=4.7e-05 Score=82.25 Aligned_cols=51 Identities=25% Similarity=0.459 Sum_probs=42.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
....+++++++++++| +.|+||||||||||+|+||+. +..+.+.+++.++.
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~ 69 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVN 69 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC
Confidence 3456899999999999 449999999999999999994 45688888887764
No 265
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=4.6e-05 Score=78.02 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=41.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 14 ~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 3457899999999999 5599999999999999999853 357777877654
No 266
>PRK04132 replication factor C small subunit; Provisional
Probab=97.60 E-value=0.0002 Score=84.55 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=41.8
Q ss_pred EEEc--CCCchHHHHHHHHHhcc-----CCCeEEecCchhhhhhccchhhhHhhhhhhc------ccccccchhhhhc
Q psy10020 25 LLLG--PPGCGKTLLAKAVATEA-----NVPFLSMNGSEFIEMIGGLGAARVRTEVVFL------HCRVFLHEITIFD 89 (640)
Q Consensus 25 LL~G--p~GsGKTtL~r~la~~~-----~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~------p~il~ideid~l~ 89 (640)
+..| |++.||||++++||..+ +..++.+++++..+. ......+....... .-++++||+|.+.
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi--d~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt 643 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT 643 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH--HHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC
Confidence 3568 99999999999999976 457899998874211 11111222222211 2489999999885
No 267
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.60 E-value=5e-05 Score=80.23 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+..+++++++++++| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (303)
T TIGR01288 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPV 68 (303)
T ss_pred CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 4456899999999999 5599999999999999999953 467777777654
No 268
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.59 E-value=6.1e-05 Score=75.50 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=40.9
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
...+++++++.+++| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 65 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNE 65 (218)
T ss_pred CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccc
Confidence 356899999999999 459999999999999999995 4567777777654
No 269
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.59 E-value=5.5e-05 Score=82.03 Aligned_cols=71 Identities=27% Similarity=0.376 Sum_probs=55.3
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh-hhhcc-chhhhHhhhhhhcccccccchhhhhccchh
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI-EMIGG-LGAARVRTEVVFLHCRVFLHEITIFDLETK 93 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~-~~~~~-~~~~~l~~~f~~~p~il~ideid~l~~~r~ 93 (640)
.|++++|+||||||||+++++||..++.+++.++...+. ..|.+ ..+..++.+|..+-. ++ +.|.+.+.+.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~--~i-~~d~i~~~r~ 118 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVK--LV-KEEAIEKVRD 118 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHH--HH-HHHHHhHHHH
Confidence 357799999999999999999999999999999988765 35666 456677777774422 23 4688887775
No 270
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=4.9e-05 Score=78.33 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=41.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
....+++++++.+++| +.|+||||||||||+++|++... .+.+.+++.++
T Consensus 23 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence 3456899999999999 55999999999999999999542 57777877655
No 271
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.59 E-value=4.8e-05 Score=82.10 Aligned_cols=51 Identities=29% Similarity=0.482 Sum_probs=42.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+..++++++++++.| +.|+||||||||||+++||+. +..+.+.+++.++.
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~ 69 (353)
T TIGR03265 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT 69 (353)
T ss_pred CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECC
Confidence 4456899999999999 459999999999999999994 45688888887664
No 272
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.59 E-value=5.4e-05 Score=78.08 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=39.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCch
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSE 56 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~ 56 (640)
....+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++..
T Consensus 23 ~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~ 75 (257)
T PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP 75 (257)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence 3457899999999999 5599999999999999999954 45666665544
No 273
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=5.6e-05 Score=78.23 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=42.2
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
.+..+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 76 (265)
T PRK10575 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE 76 (265)
T ss_pred CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehh
Confidence 3457899999999999 4599999999999999999953 4677888776653
No 274
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=5e-05 Score=76.95 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=41.0
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMS 74 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 35899999999999 5599999999999999999953 4677888776553
No 275
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=5.8e-05 Score=76.96 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=40.3
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
..+++++++.+.+| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 65 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI 65 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEc
Confidence 46899999999999 4499999999999999999953 457777777654
No 276
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=6.1e-05 Score=77.19 Aligned_cols=51 Identities=18% Similarity=0.382 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~ 58 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++..+.
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence 3457899999999999 4499999999999999999964 2677778776553
No 277
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.58 E-value=5.7e-05 Score=79.77 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=42.0
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
++..+++++++++++| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 57 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV 57 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 4457899999999999 449999999999999999995 4567888887665
No 278
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.57 E-value=6.6e-05 Score=74.35 Aligned_cols=51 Identities=25% Similarity=0.448 Sum_probs=42.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc----cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE----ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~----~~~~~i~v~~~~l~ 58 (640)
....+++++++++.+| +.|+||||+|||||+++|++. +..+.+.+++.++.
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 3457999999999999 559999999999999999996 35677888877653
No 279
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.57 E-value=5.6e-05 Score=76.26 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=40.0
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~ 74 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL 74 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEc
Confidence 4899999999999 559999999999999999995 3567777777654
No 280
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=5.8e-05 Score=77.46 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 69 (255)
T PRK11300 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69 (255)
T ss_pred CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEEC
Confidence 3457999999999999 559999999999999999995 3467777877654
No 281
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=5.6e-05 Score=77.55 Aligned_cols=50 Identities=14% Similarity=0.488 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
....+++++++++++| +.|+||||||||||+++|++... .+.+.+++.++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 73 (252)
T PRK14256 15 GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 (252)
T ss_pred CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEc
Confidence 3457999999999999 55999999999999999999642 57777877655
No 282
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.57 E-value=8.5e-05 Score=75.80 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=40.9
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~ 58 (640)
.+++++++++.+| +-|+|.|||||||+.|+|.+ .+..+.+.+++.++.
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~ 78 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT 78 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh
Confidence 6788999999999 44999999999999999999 445788888887653
No 283
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.57 E-value=5.6e-05 Score=77.86 Aligned_cols=50 Identities=14% Similarity=0.365 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence 3456899999999999 5599999999999999999954 267788877654
No 284
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.57 E-value=5.5e-05 Score=78.59 Aligned_cols=50 Identities=16% Similarity=0.381 Sum_probs=41.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
.+..+++++++++.+| +.|+|+||||||||+++|++.. ..+.+.+++.++
T Consensus 35 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 93 (271)
T PRK14238 35 GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93 (271)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEc
Confidence 3456899999999999 5599999999999999999954 457777877655
No 285
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.56 E-value=5e-05 Score=77.16 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=40.7
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
.+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 68 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR 68 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehh
Confidence 5899999999999 5599999999999999999953 5677888876553
No 286
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.56 E-value=6e-05 Score=77.75 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=41.2
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
.+..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 24 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 24 GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 4456899999999999 5599999999999999999964 357777777654
No 287
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.56 E-value=5.8e-05 Score=78.21 Aligned_cols=50 Identities=16% Similarity=0.484 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 30 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i 88 (267)
T PRK14235 30 GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88 (267)
T ss_pred CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEC
Confidence 3456899999999999 5599999999999999999954 357788877655
No 288
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.56 E-value=6.5e-05 Score=77.06 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=39.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCch
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSE 56 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~ 56 (640)
....+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++..
T Consensus 14 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 66 (253)
T TIGR02323 14 GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS 66 (253)
T ss_pred CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccc
Confidence 3446899999999999 5599999999999999999953 45667776543
No 289
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=6e-05 Score=77.38 Aligned_cols=51 Identities=24% Similarity=0.501 Sum_probs=41.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l~ 58 (640)
.+..+++++++.+++| +.|+||||||||||+++|++... .+.+.+++.++.
T Consensus 17 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 76 (253)
T PRK14261 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76 (253)
T ss_pred CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence 4557999999999999 55999999999999999998532 467777776553
No 290
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.56 E-value=0.00015 Score=77.30 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.8
Q ss_pred ceEEEcCCCchHHHHHHHHHhccC
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++||.||||+||||++|+++..++
T Consensus 31 ~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 31 GVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Confidence 499999999999999999999663
No 291
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.56 E-value=6.3e-05 Score=78.17 Aligned_cols=49 Identities=29% Similarity=0.316 Sum_probs=40.8
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
...+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT 71 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh
Confidence 356899999999999 5599999999999999999953 457777777654
No 292
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=5.3e-05 Score=76.69 Aligned_cols=48 Identities=21% Similarity=0.481 Sum_probs=40.7
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+++++++++++| +.|+||||||||||+++|++. +..+.+.+++..+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR 67 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhh
Confidence 6899999999999 559999999999999999995 44677888776553
No 293
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=6.2e-05 Score=78.38 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l~ 58 (640)
....+++++++.+.+| +.|+||||||||||+++|++... .+.+.+++.++.
T Consensus 31 ~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 3446899999999999 55999999999999999998542 577778776553
No 294
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.00043 Score=73.48 Aligned_cols=47 Identities=9% Similarity=0.050 Sum_probs=33.5
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|... .+++++ |.+|++++.|-|.++. .+.|..|+.+....++
T Consensus 112 aLLK~LEep------p~~t~~-il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 112 AFLKTIEEP------PKGVFI-ILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFI 161 (313)
T ss_pred HHHHHhcCC------CCCeEE-EEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 566666653 335566 6667889999999887 8888888866666666
No 295
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.55 E-value=6e-05 Score=81.88 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=42.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+..+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~ 68 (369)
T PRK11000 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMN 68 (369)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 4456899999999999 559999999999999999995 45678888877653
No 296
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=6e-05 Score=74.78 Aligned_cols=49 Identities=29% Similarity=0.471 Sum_probs=41.1
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-----CCeEEecCchh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-----VPFLSMNGSEF 57 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-----~~~i~v~~~~l 57 (640)
...+++++++.+++| +.|+||||||||||+++|++... .+.+.+++.++
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~ 74 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEEC
Confidence 447899999999999 55999999999999999999643 67778877654
No 297
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.55 E-value=0.0004 Score=74.27 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=45.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHhc---cCCCeEEecCchhhhhhc-----cch-------hhhHhhhhh-hcccccccch
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGSEFIEMIG-----GLG-------AARVRTEVV-FLHCRVFLHE 84 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~~l~~~~~-----~~~-------~~~l~~~f~-~~p~il~ide 84 (640)
...++|+|++||||++++++|... ...+|+.++|..+..... |.. .....-.|. .....||+||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Lde 101 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDE 101 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCC
Confidence 445999999999999999999763 347899999876532111 100 000001122 3457899999
Q ss_pred hhhhc
Q psy10020 85 ITIFD 89 (640)
Q Consensus 85 id~l~ 89 (640)
++.+.
T Consensus 102 i~~L~ 106 (329)
T TIGR02974 102 LATAS 106 (329)
T ss_pred hHhCC
Confidence 99876
No 298
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=6.6e-05 Score=76.90 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=41.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 15 ~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI 73 (251)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEc
Confidence 3457899999999999 5599999999999999999964 366777777654
No 299
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.55 E-value=5.8e-05 Score=82.05 Aligned_cols=51 Identities=29% Similarity=0.537 Sum_probs=42.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
....+++++++++.+| +.|+||||||||||+++||+. +..+.+.+++.++.
T Consensus 25 ~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~ 79 (375)
T PRK09452 25 DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT 79 (375)
T ss_pred CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 3446899999999999 459999999999999999994 45688888887764
No 300
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.55 E-value=5.5e-05 Score=75.81 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=40.3
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 68 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI 68 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEh
Confidence 35899999999999 4599999999999999999953 467777777654
No 301
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.55 E-value=6.4e-05 Score=77.91 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 31 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 31 GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 3457899999999999 5599999999999999999964 367777777655
No 302
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.55 E-value=6.2e-05 Score=80.80 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=43.3
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
+++..+++++++++++| +.|+||||+|||||+++|++. +..+.+.+++.++.
T Consensus 51 y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~ 106 (340)
T PRK13536 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP 106 (340)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECC
Confidence 34557999999999999 449999999999999999994 45778888887653
No 303
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.55 E-value=7e-05 Score=74.19 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=41.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++++| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (201)
T cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL 64 (201)
T ss_pred CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 4457899999999999 5599999999999999999954 467777776654
No 304
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=5.7e-05 Score=77.63 Aligned_cols=51 Identities=25% Similarity=0.465 Sum_probs=42.1
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+..+++++++.+.+| +.|+||||||||||+++|++. +..+.+.+++.++.
T Consensus 13 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (255)
T PRK11231 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS 67 (255)
T ss_pred CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhH
Confidence 4457999999999999 459999999999999999995 34677788776553
No 305
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.00041 Score=75.08 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=33.5
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..+... ...+++ |.+|++++.+.|.++. .+.|+.|+.+....+|
T Consensus 160 aLLK~LEep------p~~~~~-IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L 209 (365)
T PRK07471 160 ALLKVLEEP------PARSLF-LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDAL 209 (365)
T ss_pred HHHHHHhcC------CCCeEE-EEEECCchhchHHhhccceEEECCCCCHHHHHHHH
Confidence 555555442 235566 7789999999998876 8889888866555555
No 306
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=6.7e-05 Score=76.19 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=41.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 69 (237)
T PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI 69 (237)
T ss_pred CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEec
Confidence 3456899999999999 5599999999999999999953 567788877654
No 307
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.54 E-value=7e-05 Score=78.73 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=44.8
Q ss_pred cccc-ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 5 DYLK-RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 5 ~~l~-~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
..++ ...+++++++.+++| +.|.||||+|||||+|+|++. +..+.+.+.+.+..
T Consensus 12 k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~ 70 (293)
T COG1131 12 KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVV 70 (293)
T ss_pred EEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCc
Confidence 3455 578999999999999 449999999999999999994 45678888886654
No 308
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.54 E-value=6.5e-05 Score=75.78 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=40.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCch
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSE 56 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~ 56 (640)
....+++++++++.+| +.|.||||||||||+++|++. +..+.+.+++..
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 85 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV 85 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 4567999999999999 559999999999999999994 345667776654
No 309
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.54 E-value=6.6e-05 Score=79.47 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=43.2
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
+.+..+++++++++++| +.|+||||+|||||+++|++. +..+.+.+.+.++.
T Consensus 17 ~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~ 72 (306)
T PRK13537 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72 (306)
T ss_pred ECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecc
Confidence 34567999999999999 449999999999999999995 45678888877653
No 310
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=6.9e-05 Score=76.61 Aligned_cols=51 Identities=14% Similarity=0.387 Sum_probs=42.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~~l~ 58 (640)
....+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 13 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~ 70 (246)
T PRK14269 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK 70 (246)
T ss_pred CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecc
Confidence 4457899999999999 5599999999999999999963 4677888777653
No 311
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.54 E-value=7e-05 Score=76.58 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=41.1
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--C-----CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--N-----VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~-----~~~i~v~~~~l 57 (640)
....+++++++++++| +.|+||||||||||+++|++.. . .+.+.+++.++
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEc
Confidence 3446899999999999 4499999999999999999954 2 56777777654
No 312
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.53 E-value=7.3e-05 Score=76.91 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=42.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
....+++++++.+.+| +.|+||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66 (256)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcc
Confidence 4457999999999999 5599999999999999999953 4677888776543
No 313
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=7.1e-05 Score=76.73 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=41.0
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++... .+.+.+++..+
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 74 (252)
T PRK14255 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI 74 (252)
T ss_pred CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEc
Confidence 3457899999999999 55999999999999999999532 57777777654
No 314
>KOG0651|consensus
Probab=97.53 E-value=4.8e-05 Score=78.29 Aligned_cols=108 Identities=13% Similarity=0.152 Sum_probs=82.0
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhc-cCCCCCCccchhhhHhhhhhhcccccccccccc
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIEL-GSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCR 358 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~-~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~ 358 (640)
++.+.|+.-+.|-.++.++.-++.|++..+|+++++|| +|+.- ....-...++.+. -||..||.+||||....++
T Consensus 197 v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdei---DAigGRr~se~Ts~dreiq-rTLMeLlnqmdgfd~l~rV 272 (388)
T KOG0651|consen 197 VVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEI---DAIGGRRFSEGTSSDREIQ-RTLMELLNQMDGFDTLHRV 272 (388)
T ss_pred eeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhh---hhhccEEeccccchhHHHH-HHHHHHHHhhccchhcccc
Confidence 67788899999999999999999999999999999999 55432 2111122233444 4888999999999988776
Q ss_pred hhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCc
Q psy10020 359 QVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSE 402 (640)
Q Consensus 359 ~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~ 402 (640)
-+ |++ +|++|.|++++|||| +.+.-+...+|++
T Consensus 273 k~--------Ima--tNrpdtLdpaLlRpG-Rldrk~~iPlpne 305 (388)
T KOG0651|consen 273 KT--------IMA--TNRPDTLDPALLRPG-RLDRKVEIPLPNE 305 (388)
T ss_pred cE--------EEe--cCCccccchhhcCCc-cccceeccCCcch
Confidence 55 444 589999999999997 6565555556654
No 315
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=7.6e-05 Score=76.51 Aligned_cols=51 Identities=16% Similarity=0.383 Sum_probs=41.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~ 58 (640)
.+..+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 3456899999999999 4599999999999999999953 3577888776653
No 316
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=8.3e-05 Score=75.36 Aligned_cols=49 Identities=16% Similarity=0.397 Sum_probs=40.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++.+++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~ 66 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR 66 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh
Confidence 45899999999999 4599999999999999999953 4677778776553
No 317
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=7.5e-05 Score=76.39 Aligned_cols=50 Identities=24% Similarity=0.565 Sum_probs=40.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||+|||||+++|++... .+.+.+++.++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 72 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEc
Confidence 3457899999999999 44999999999999999999543 56677776554
No 318
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.52 E-value=7.3e-05 Score=72.82 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=39.8
Q ss_pred cccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 12 YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 12 ~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+++++++++++| +.|+||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 789999999999 5599999999999999999954 4677888776553
No 319
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=6.3e-05 Score=77.09 Aligned_cols=50 Identities=20% Similarity=0.515 Sum_probs=41.2
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++... .+.+.+++.++
T Consensus 15 ~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 15 HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI 73 (251)
T ss_pred CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEc
Confidence 3456999999999999 55999999999999999999653 36777777654
No 320
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.52 E-value=7.4e-05 Score=77.13 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=41.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-----CCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-----VPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-----~~~i~v~~~~l~ 58 (640)
.+..+++++++++.+| +.|+||||||||||+++|++... .+.+.+++..+.
T Consensus 15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQ 72 (262)
T ss_pred CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecc
Confidence 4457899999999999 55999999999999999999653 267778776553
No 321
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.52 E-value=0.00031 Score=84.13 Aligned_cols=35 Identities=43% Similarity=0.644 Sum_probs=28.4
Q ss_pred eEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFI 58 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~ 58 (640)
++|+||+|||||+++++|+..+ +.+++.++++.+.
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 6799999999999999999854 3467777776653
No 322
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.52 E-value=6e-05 Score=75.60 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=40.7
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
..+++++++.+++| +.|+||||+|||||+++|++. +..+.+.+++..+.
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 69 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS 69 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhH
Confidence 36999999999999 449999999999999999994 44677777776553
No 323
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=5e-05 Score=79.06 Aligned_cols=48 Identities=27% Similarity=0.444 Sum_probs=41.2
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
..+++++++.+.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 69 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV 69 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 46899999999999 559999999999999999995 3567888887665
No 324
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00044 Score=79.74 Aligned_cols=27 Identities=37% Similarity=0.552 Sum_probs=23.2
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccC
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++..+||+||+|+||||+++++|..+.
T Consensus 38 l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 38 LAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 455588999999999999999999654
No 325
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00076 Score=73.31 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=44.0
Q ss_pred eEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCchhhhhhccc----hhhhHhhhhhhcccccccchhhhhccch
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGSEFIEMIGGL----GAARVRTEVVFLHCRVFLHEITIFDLET 92 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~~l~~~~~~~----~~~~l~~~f~~~p~il~ideid~l~~~r 92 (640)
++|+||+|+|||.|+++++... +..++.++...+...+... .....+..+ +--+++||+++.+..+.
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE 191 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh
Confidence 7899999999999999999832 2346666666654333221 112233333 34578999999987544
No 326
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.52 E-value=9.9e-05 Score=70.90 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=36.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecC
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNG 54 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~ 54 (640)
..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~ 62 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE 62 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 46899999999999 5599999999999999999954 345555543
No 327
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.51 E-value=7.2e-05 Score=80.71 Aligned_cols=51 Identities=27% Similarity=0.554 Sum_probs=42.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
....+++++++++..| +.|+||||||||||+|+|++. +..+.+.+++.++.
T Consensus 13 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~ 67 (353)
T PRK10851 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS 67 (353)
T ss_pred CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 3456899999999999 449999999999999999994 45688888887664
No 328
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.51 E-value=7.7e-05 Score=76.40 Aligned_cols=51 Identities=16% Similarity=0.391 Sum_probs=41.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~ 58 (640)
.+..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73 (250)
T ss_pred CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3456899999999999 4599999999999999999953 2577777776553
No 329
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=7.3e-05 Score=77.26 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=42.8
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFI 58 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~ 58 (640)
++...+++++++.+++| +.|+||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 34557899999999999 5599999999999999999965 3577788777653
No 330
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.51 E-value=8.3e-05 Score=76.97 Aligned_cols=48 Identities=27% Similarity=0.475 Sum_probs=40.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 75 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDL 75 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence 46899999999999 4499999999999999999954 467777777654
No 331
>PRK08181 transposase; Validated
Probab=97.51 E-value=0.00014 Score=75.31 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=44.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHhc---cCCCeEEecCchhhhhhccc-hhhhHhhhhh--hcccccccchhhhhc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGSEFIEMIGGL-GAARVRTEVV--FLHCRVFLHEITIFD 89 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~~l~~~~~~~-~~~~l~~~f~--~~p~il~ideid~l~ 89 (640)
..+++|+||||||||.|+.+|+.. .+..++.++..++....... ........+. ..+.+|+|||+....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 345899999999999999999863 35566777666665332111 1111222222 456789999987654
No 332
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=8.1e-05 Score=77.14 Aligned_cols=50 Identities=18% Similarity=0.409 Sum_probs=41.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
.+..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 32 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 32 GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 3457899999999999 5599999999999999999942 457777877655
No 333
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.51 E-value=8.6e-05 Score=76.48 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=40.5
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCch
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSE 56 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~ 56 (640)
...+++++++++.+| +.|.||||||||||+++|++. +..+.+.+++.+
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence 456899999999999 559999999999999999995 346777777765
No 334
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.50 E-value=8.5e-05 Score=75.88 Aligned_cols=49 Identities=22% Similarity=0.443 Sum_probs=40.9
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc----cCCCeEEecCchh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE----ANVPFLSMNGSEF 57 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~----~~~~~i~v~~~~l 57 (640)
...+++++++.+.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 67 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCcc
Confidence 446899999999999 559999999999999999996 3467777777654
No 335
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.50 E-value=5.9e-05 Score=82.51 Aligned_cols=166 Identities=13% Similarity=0.166 Sum_probs=101.7
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccC-CCCCCccchhhhHhhhhhhcccccccccccc
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGS-PIDTSRSHRVLRKWVLSSLLTVNKFASLVCR 358 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~-~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~ 358 (640)
++++++...+.|-+...++..|..++...++++++||+ +++.... ......+.. ...++.++|..+|+|......
T Consensus 210 i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEI---D~i~~~r~~~~~~~d~~-~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 210 VVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEV---DSIATKRFDAQTGADRE-VQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred EehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECH---hhhccccccccCCccHH-HHHHHHHHHHHhhccCCCCCE
Confidence 34667777778888888999999999999999999999 4443211 111111112 235678999999999776554
Q ss_pred hhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec------cc
Q psy10020 359 QVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS------SL 432 (640)
Q Consensus 359 ~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g------~~ 432 (640)
.+ |+ ++|+++.+|++.++|+ +++.-+.+.+|+.. .|..++..+...+ ..++++.+. ..
T Consensus 286 ~V--------I~--aTN~~d~LDpAllR~G-Rfd~~I~~~~P~~~---~R~~Il~~~~~~~--~l~~dvd~~~la~~t~g 349 (398)
T PTZ00454 286 KV--------IM--ATNRADTLDPALLRPG-RLDRKIEFPLPDRR---QKRLIFQTITSKM--NLSEEVDLEDFVSRPEK 349 (398)
T ss_pred EE--------EE--ecCCchhCCHHHcCCC-cccEEEEeCCcCHH---HHHHHHHHHHhcC--CCCcccCHHHHHHHcCC
Confidence 43 43 4588999999999996 55544444455432 3445555443322 123333332 34
Q ss_pred cchhhhhHHHHHHHHHHHhchhhhcccCCCCccc
Q psy10020 433 LTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL 466 (640)
Q Consensus 433 ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v 466 (640)
.+|+++ .++++.+++.+.+.....+.+.|++.+
T Consensus 350 ~sgaDI-~~l~~eA~~~A~r~~~~~i~~~df~~A 382 (398)
T PTZ00454 350 ISAADI-AAICQEAGMQAVRKNRYVILPKDFEKG 382 (398)
T ss_pred CCHHHH-HHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 578888 566666665555443334444444443
No 336
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.50 E-value=9.3e-05 Score=75.08 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=41.0
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA 67 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH
Confidence 45899999999999 5599999999999999999953 4677888776553
No 337
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.50 E-value=6.1e-05 Score=82.49 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=43.2
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+..+++++++.+.+| +.|+||||+|||||+|+|++. +..+.+.+++.++.
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~ 68 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVE 68 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcC
Confidence 4567999999999999 449999999999999999994 45678888887654
No 338
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=7.3e-05 Score=81.36 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=42.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+..+++++++++..| +.|+||||||||||+|+||+. +..+.+.+++.++.
T Consensus 30 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~ 84 (377)
T PRK11607 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS 84 (377)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 3446889999999999 459999999999999999994 45678888887653
No 339
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.00054 Score=73.79 Aligned_cols=47 Identities=4% Similarity=0.028 Sum_probs=33.4
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|.... ..+++ |..|++++.+.|.++. .+.|+.|+.+....+|
T Consensus 160 aLLk~LEEpp------~~~~f-iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L 209 (351)
T PRK09112 160 AILKTLEEPP------ARALF-ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKAL 209 (351)
T ss_pred HHHHHHhcCC------CCceE-EEEECChhhccHHHHhhccEEEecCCCHHHHHHHH
Confidence 5666665432 24455 5567889999999887 8889888877777777
No 340
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=8.6e-05 Score=76.07 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=41.2
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||+|||||+++|++... .+.+.+++.++
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73 (252)
T ss_pred CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEc
Confidence 3457999999999999 45999999999999999999642 47777777654
No 341
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=8.2e-05 Score=77.20 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=40.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 24 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i 82 (269)
T PRK14259 24 GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDL 82 (269)
T ss_pred CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 3456899999999999 4599999999999999999953 356677776654
No 342
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=7.4e-05 Score=76.54 Aligned_cols=51 Identities=14% Similarity=0.340 Sum_probs=41.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~ 58 (640)
....+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++..+.
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence 4456899999999999 5599999999999999999842 1577778776553
No 343
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.49 E-value=9.5e-05 Score=73.28 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=37.2
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecC
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNG 54 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~ 54 (640)
.+++++++.+++| +.|.||||||||||+++|++. +..+.+.+++
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g 66 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG 66 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC
Confidence 6999999999999 559999999999999999994 3456666654
No 344
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.49 E-value=7.1e-05 Score=85.20 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=43.4
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFIE 59 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~~ 59 (640)
+.+++++++++++| +.|+||+|||||||++.|++. +..|.+.+++.++..
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~ 401 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS 401 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 45899999999999 669999999999999999994 456889999887753
No 345
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.49 E-value=8.5e-05 Score=76.45 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=41.2
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||+|||||+++|++.. ..+.+.+++..+
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 69 (257)
T PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI 69 (257)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 3456899999999999 4599999999999999999954 457777777654
No 346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.49 E-value=0.0005 Score=82.55 Aligned_cols=66 Identities=30% Similarity=0.397 Sum_probs=41.7
Q ss_pred eEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhh-----h-------ccchh-hhHhhhhh-hcccccccchhh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEM-----I-------GGLGA-ARVRTEVV-FLHCRVFLHEIT 86 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~-----~-------~~~~~-~~l~~~f~-~~p~il~ideid 86 (640)
++|+||+|+|||+++++|+..+ +.+++.++.+.+... . .|... ..+..... ...+++++||++
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeie 677 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVE 677 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccc
Confidence 6799999999999999999854 356777777654321 1 11100 11111122 334689999998
Q ss_pred hhc
Q psy10020 87 IFD 89 (640)
Q Consensus 87 ~l~ 89 (640)
...
T Consensus 678 ka~ 680 (852)
T TIGR03346 678 KAH 680 (852)
T ss_pred cCC
Confidence 654
No 347
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.49 E-value=7.7e-05 Score=75.14 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=40.8
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
.+++++++.+++| +.|+||||||||||+++|++.. ..+.+.+++..+.
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 79 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS 79 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchH
Confidence 5899999999999 5599999999999999999953 4677888776653
No 348
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.49 E-value=9.1e-05 Score=74.50 Aligned_cols=50 Identities=28% Similarity=0.423 Sum_probs=40.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|.||||+|||||+++|++.. ..+.+.+++..+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~ 64 (223)
T TIGR03740 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPW 64 (223)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 3456899999999999 4599999999999999999953 466777776543
No 349
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=8.6e-05 Score=76.56 Aligned_cols=50 Identities=16% Similarity=0.447 Sum_probs=41.1
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++... .+.+.+++.++
T Consensus 18 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (259)
T PRK14260 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI 76 (259)
T ss_pred CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEec
Confidence 4456899999999999 55999999999999999999543 46777777654
No 350
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=8.4e-05 Score=77.46 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=41.7
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
+....+++++++++++| +.|+||||+|||||+++|++... .+.+.+++..+
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 90 (276)
T PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI 90 (276)
T ss_pred ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEc
Confidence 34557899999999999 55999999999999999999643 56777776554
No 351
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.49 E-value=9.5e-05 Score=76.64 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=40.2
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 77 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL 77 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence 5899999999999 5599999999999999999954 467788877654
No 352
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=8.9e-05 Score=72.90 Aligned_cols=48 Identities=27% Similarity=0.418 Sum_probs=40.4
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc----cCCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE----ANVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~----~~~~~i~v~~~~l 57 (640)
..+++++++.+.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 46899999999999 559999999999999999984 3467777777655
No 353
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.48 E-value=8.2e-05 Score=78.55 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=42.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
++..+++++++.+++| +.|+||||+|||||+++|++. +..+.+.+++.++.
T Consensus 13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVL 67 (301)
T ss_pred CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4567999999999999 449999999999999999994 45677888776553
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.00036 Score=74.71 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=38.5
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+. . .+++++ |.+|++++.|.|.+++ .+.|++|+.+....+|
T Consensus 151 aLLKtLEE--P----p~~t~f-iL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L 200 (342)
T PRK06964 151 ALLKTLEE--P----PPGTVF-LLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWL 200 (342)
T ss_pred HHHHHhcC--C----CcCcEE-EEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHH
Confidence 67777775 3 557888 8999999999999987 8999999877677666
No 355
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.48 E-value=9.2e-05 Score=75.25 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=40.0
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCch
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSE 56 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~ 56 (640)
...+++++++.+.+| +.|+||||+|||||+++|++. +..+.+.+++..
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 84 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE
Confidence 456899999999999 459999999999999999995 346777777654
No 356
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00015 Score=83.94 Aligned_cols=68 Identities=34% Similarity=0.451 Sum_probs=45.2
Q ss_pred CCc-eEEEcCCCchHHHHHHHHHhccC---CCeEEecCchhhhh------------hccchh-hhHhhhh-hhccccccc
Q psy10020 21 PKG-ALLLGPPGCGKTLLAKAVATEAN---VPFLSMNGSEFIEM------------IGGLGA-ARVRTEV-VFLHCRVFL 82 (640)
Q Consensus 21 ~~G-iLL~Gp~GsGKTtL~r~la~~~~---~~~i~v~~~~l~~~------------~~~~~~-~~l~~~f-~~~p~il~i 82 (640)
|-| .++.||+|+|||-|+|+||..+. ..++.++.+++... |+|..+ -.+.... ....|++++
T Consensus 520 PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLl 599 (786)
T COG0542 520 PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILL 599 (786)
T ss_pred CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEe
Confidence 444 56899999999999999999765 67889988887531 222111 0111111 144589999
Q ss_pred chhhhh
Q psy10020 83 HEITIF 88 (640)
Q Consensus 83 deid~l 88 (640)
||++.-
T Consensus 600 DEIEKA 605 (786)
T COG0542 600 DEIEKA 605 (786)
T ss_pred chhhhc
Confidence 998754
No 357
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.48 E-value=9.1e-05 Score=76.63 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=40.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
.+..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 21 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 79 (264)
T PRK14243 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL 79 (264)
T ss_pred CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEc
Confidence 4457899999999999 5599999999999999999853 356777777654
No 358
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.48 E-value=7.4e-05 Score=74.24 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=40.9
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+++++++.+++| +.|.||||||||||+++|++. +..+.+.+++..+.
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 73 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIS 73 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhH
Confidence 6899999999999 559999999999999999995 45677888877653
No 359
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.48 E-value=0.0001 Score=72.66 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=38.6
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
...+++ +++++++| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 13 ~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 64 (195)
T PRK13541 13 QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI 64 (195)
T ss_pred CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCccc
Confidence 344555 99999999 559999999999999999994 4567788877654
No 360
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=9.5e-05 Score=76.97 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=40.4
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
..+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++..+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 66 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDT 66 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEC
Confidence 45999999999999 4499999999999999999953 467777777654
No 361
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.0001 Score=74.66 Aligned_cols=50 Identities=26% Similarity=0.445 Sum_probs=41.5
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
...+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 65 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT 65 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 447999999999999 5599999999999999999954 4677777776543
No 362
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.47 E-value=8.5e-05 Score=71.16 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=47.3
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhhhccchhhhHhhhhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEMIGGLGAARVRTEVV 74 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~ 74 (640)
...+.+++.+.+| +.++|.+|||||||+|.|++ .+..+.+.+++..+.-.......+.++.+|+
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQ 94 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQ 94 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeec
Confidence 5667788999888 55999999999999999999 4557888888887752222233445555555
No 363
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.46 E-value=9.8e-05 Score=74.76 Aligned_cols=45 Identities=22% Similarity=0.466 Sum_probs=36.9
Q ss_pred ccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 13 YQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 13 l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 49 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI 49 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 45778899999 5599999999999999999954 467778877654
No 364
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.46 E-value=9.1e-05 Score=76.99 Aligned_cols=50 Identities=20% Similarity=0.487 Sum_probs=41.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 36 ~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i 94 (272)
T PRK14236 36 GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNI 94 (272)
T ss_pred CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEEC
Confidence 3457899999999999 4599999999999999999964 357777777655
No 365
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.46 E-value=2.2e-05 Score=78.81 Aligned_cols=103 Identities=9% Similarity=0.014 Sum_probs=74.4
Q ss_pred ccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhc
Q psy10020 282 TASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVA 361 (640)
Q Consensus 282 gadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA 361 (640)
..++-.-.+|-|+++++.++..|++.+|||++++++ +|+..-.. .+.....++ ..+|-||++|||..+++++.+
T Consensus 184 at~liGehVGdgar~Ihely~rA~~~aPcivFiDE~---DAiaLdRr-yQelRGDVs-EiVNALLTelDgi~eneGVvt- 257 (368)
T COG1223 184 ATELIGEHVGDGARRIHELYERARKAAPCIVFIDEL---DAIALDRR-YQELRGDVS-EIVNALLTELDGIKENEGVVT- 257 (368)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhh---hhhhhhhh-HHHhcccHH-HHHHHHHHhccCcccCCceEE-
Confidence 344555567999999999999999999999999999 66653211 111122233 568899999999999999876
Q ss_pred cccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCc
Q psy10020 362 FHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSE 402 (640)
Q Consensus 362 ~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~ 402 (640)
|+++ |+++.||++ ||. +|.--..+.+|++
T Consensus 258 -------IaaT--N~p~~LD~a-iRs--RFEeEIEF~LP~~ 286 (368)
T COG1223 258 -------IAAT--NRPELLDPA-IRS--RFEEEIEFKLPND 286 (368)
T ss_pred -------Eeec--CChhhcCHH-HHh--hhhheeeeeCCCh
Confidence 6555 888888877 333 3444556788874
No 366
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.46 E-value=9.4e-05 Score=75.78 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=40.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 16 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74 (252)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence 3456899999999999 5599999999999999999852 257777777654
No 367
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=9.4e-05 Score=75.73 Aligned_cols=51 Identities=22% Similarity=0.561 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~ 58 (640)
.+..+++++++++++| +.|+||||+|||||+++|++.. ..+.+.+++.++.
T Consensus 14 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 73 (250)
T PRK14266 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73 (250)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence 3456999999999999 5599999999999999999853 3577788776553
No 368
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=6.1e-05 Score=78.63 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=41.4
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
..+++++++++.+| +.|+||||+|||||+++|++. +..+.+.+++.++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~ 72 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLS 72 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECC
Confidence 35999999999999 459999999999999999994 45677888887653
No 369
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=9.5e-05 Score=77.47 Aligned_cols=50 Identities=22% Similarity=0.473 Sum_probs=41.2
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~ 58 (640)
...+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++..+.
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 346899999999999 4599999999999999999942 5677888776553
No 370
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.0001 Score=76.58 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=40.7
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i 73 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI 73 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Confidence 46899999999999 4599999999999999999954 467788877655
No 371
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.46 E-value=0.00011 Score=75.65 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=40.6
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc------CCCeEEecCchh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA------NVPFLSMNGSEF 57 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~------~~~~i~v~~~~l 57 (640)
...+++++++.+.+| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV 71 (254)
T ss_pred ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeec
Confidence 346899999999999 5599999999999999999954 347777777654
No 372
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.45 E-value=0.00011 Score=74.22 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=39.8
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~~l 57 (640)
..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 57899999999999 5599999999999999999954 356677766543
No 373
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.45 E-value=9.4e-05 Score=80.07 Aligned_cols=51 Identities=25% Similarity=0.425 Sum_probs=42.2
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCC--CeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANV--PFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~--~~i~v~~~~l~ 58 (640)
....+++++++++..| +.|+||||||||||+++|++. +.. +.+.+++.++.
T Consensus 16 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~ 72 (362)
T TIGR03258 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT 72 (362)
T ss_pred CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECC
Confidence 3456899999999999 459999999999999999994 445 78888887653
No 374
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=9.5e-05 Score=79.54 Aligned_cols=49 Identities=18% Similarity=0.376 Sum_probs=41.7
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~ 70 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT 70 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 46899999999999 4599999999999999999954 5678888877653
No 375
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=9.9e-05 Score=76.03 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=41.0
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 23 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i 81 (258)
T PRK14268 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81 (258)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEc
Confidence 3456899999999999 5599999999999999999954 357777777654
No 376
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.0001 Score=77.38 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=39.5
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 75 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAI 75 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEc
Confidence 4899999999999 5599999999999999999954 457777777654
No 377
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.45 E-value=0.0001 Score=74.49 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=37.9
Q ss_pred cccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc------CCCeEEecCchh
Q psy10020 12 YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA------NVPFLSMNGSEF 57 (640)
Q Consensus 12 ~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~------~~~~i~v~~~~l 57 (640)
+++++++++.+| +.|.||||+|||||+++|++.. ..+.+.+++.++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~ 54 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL 54 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEec
Confidence 367889999999 5599999999999999999954 357777777655
No 378
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.45 E-value=0.00011 Score=75.43 Aligned_cols=49 Identities=27% Similarity=0.448 Sum_probs=40.3
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc----cCCCeEEecCchh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE----ANVPFLSMNGSEF 57 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~----~~~~~i~v~~~~l 57 (640)
...+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 19 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 446999999999999 449999999999999999995 3456777776554
No 379
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.45 E-value=0.00038 Score=80.04 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=41.4
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCC--CeEEecCchhhhhhccch--hhhHh---------hhhhhcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANV--PFLSMNGSEFIEMIGGLG--AARVR---------TEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~--~~i~v~~~~l~~~~~~~~--~~~l~---------~~f~~~p~il~ideid~l~ 89 (640)
|+||.|++|+|||+++++|+..++. +|+.+..........|.. ...+. .++.....++|+||++.+.
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~ 97 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLD 97 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCC
Confidence 4899999999999999999986553 577766432222222211 00000 1111333689999998876
No 380
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00011 Score=76.73 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=40.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
..+++++++++.+| +.|+||||+|||||+++|++. +..+.+.+++.++
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI 68 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 35899999999999 459999999999999999995 3567788877654
No 381
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0001 Score=77.30 Aligned_cols=48 Identities=13% Similarity=0.321 Sum_probs=41.4
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIT 72 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 5999999999999 559999999999999999994 45688888877653
No 382
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=9.5e-05 Score=77.12 Aligned_cols=47 Identities=11% Similarity=0.251 Sum_probs=39.7
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+++++++++++| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i 71 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI 71 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 5899999999999 449999999999999999995 3467777777654
No 383
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=7.1e-05 Score=78.12 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=40.8
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+++++++.+.+| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL 71 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 4899999999999 559999999999999999995 4577888887765
No 384
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=9.6e-05 Score=80.90 Aligned_cols=50 Identities=12% Similarity=0.261 Sum_probs=41.7
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
....++++++++++| +.|+||||||||||+++|++. +..+.+.+++.++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~ 93 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIA 93 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECC
Confidence 334789999999999 559999999999999999995 45678888887653
No 385
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.44 E-value=0.001 Score=75.85 Aligned_cols=69 Identities=32% Similarity=0.364 Sum_probs=45.4
Q ss_pred CCceEEEcCCCchHHHHHHHHHhc---cCCCeEEecCchhhhhhc-----cch--------hhhHhhhhhhcccccccch
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGSEFIEMIG-----GLG--------AARVRTEVVFLHCRVFLHE 84 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~~l~~~~~-----~~~--------~~~l~~~f~~~p~il~ide 84 (640)
...++|+|++||||++++++|... .+.+++.++|..+..... |.. ..............||+||
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~lde 298 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDE 298 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEec
Confidence 345899999999999999999874 356899999976642111 100 0000011123457899999
Q ss_pred hhhhc
Q psy10020 85 ITIFD 89 (640)
Q Consensus 85 id~l~ 89 (640)
++.+.
T Consensus 299 i~~L~ 303 (534)
T TIGR01817 299 IGEIS 303 (534)
T ss_pred hhhCC
Confidence 99876
No 386
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00011 Score=76.58 Aligned_cols=48 Identities=27% Similarity=0.363 Sum_probs=40.7
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
..+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 66 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI 66 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEC
Confidence 45899999999999 4499999999999999999954 467788877665
No 387
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.44 E-value=0.00012 Score=79.60 Aligned_cols=54 Identities=37% Similarity=0.591 Sum_probs=45.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhh-hhcc-chhhhHhhhhh
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE-MIGG-LGAARVRTEVV 74 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~-~~~~-~~~~~l~~~f~ 74 (640)
+.+++|+||||||||++++.||..++.+++.++...+.. .|.| ..+..++.+|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~ 105 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVE 105 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHH
Confidence 467999999999999999999999999999999887763 5777 44566666665
No 388
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.44 E-value=0.0001 Score=74.88 Aligned_cols=50 Identities=28% Similarity=0.499 Sum_probs=41.1
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 11 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~ 64 (237)
T TIGR00968 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA 64 (237)
T ss_pred CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence 3457999999999999 4499999999999999999954 456777776554
No 389
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00011 Score=76.35 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=40.1
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+++++++.+.+| +.|.||||||||||+++|++.. ..+.+.+++.++
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 73 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 4899999999999 4599999999999999999953 467788877655
No 390
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.43 E-value=0.00022 Score=85.31 Aligned_cols=69 Identities=35% Similarity=0.419 Sum_probs=44.6
Q ss_pred CCc-eEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhh------------hccchh-hhHhhhh-hhccccccc
Q psy10020 21 PKG-ALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEM------------IGGLGA-ARVRTEV-VFLHCRVFL 82 (640)
Q Consensus 21 ~~G-iLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~------------~~~~~~-~~l~~~f-~~~p~il~i 82 (640)
|.| ++|+||+|+|||.++++||..+ ...++.++.+.+... |.|... ..+...+ ....+++++
T Consensus 595 p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvll 674 (852)
T TIGR03345 595 PLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLL 674 (852)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEE
Confidence 455 6799999999999999999866 346677776655321 222111 0111222 256689999
Q ss_pred chhhhhc
Q psy10020 83 HEITIFD 89 (640)
Q Consensus 83 deid~l~ 89 (640)
||++...
T Consensus 675 DEieka~ 681 (852)
T TIGR03345 675 DEVEKAH 681 (852)
T ss_pred echhhcC
Confidence 9998544
No 391
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.43 E-value=0.00011 Score=79.04 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=41.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||+|+|++. +..+.+.+++.++.
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLT 70 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 36899999999999 449999999999999999994 45688888887664
No 392
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.42 E-value=0.00012 Score=75.89 Aligned_cols=48 Identities=27% Similarity=0.457 Sum_probs=40.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
..+++++++.+.+| +.|.||||||||||+++|++. +..+.+.+++..+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~ 76 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL 76 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 56899999999999 559999999999999999995 3467777777654
No 393
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.42 E-value=0.00012 Score=72.03 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=40.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc----CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA----NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~----~~~~i~v~~~~l~ 58 (640)
..+++++++.+.+| +.|.||||||||||+++|++.. ..+.+.+++.++.
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~ 76 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc
Confidence 46999999999999 5599999999999999999965 3567777776553
No 394
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00012 Score=76.71 Aligned_cols=50 Identities=18% Similarity=0.484 Sum_probs=41.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 50 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i 108 (285)
T PRK14254 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV 108 (285)
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 3456899999999999 5599999999999999999964 367777877654
No 395
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.41 E-value=0.00013 Score=74.98 Aligned_cols=46 Identities=24% Similarity=0.404 Sum_probs=37.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEec
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMN 53 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~ 53 (640)
.+..+++++++.+++| +.|+||||+|||||+++|++.. ..+.+.++
T Consensus 15 ~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~ 64 (251)
T PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN 64 (251)
T ss_pred CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 3456899999999999 5599999999999999999954 34555554
No 396
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.41 E-value=0.00034 Score=74.82 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.0
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+++|.|+||+||||++|++++.+
T Consensus 27 ~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 27 GVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred eEEEEcCCCCCHHHHHHHHHHhh
Confidence 48899999999999999999855
No 397
>PRK06526 transposase; Provisional
Probab=97.41 E-value=0.00016 Score=74.44 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=40.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccc-hhhhHhhhhh--hcccccccchhhhhc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGL-GAARVRTEVV--FLHCRVFLHEITIFD 89 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~-~~~~l~~~f~--~~p~il~ideid~l~ 89 (640)
..+++|+||||||||+|+.+|+..+ +..++.++..++....... ........+. ..+.+|++||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 3468999999999999999998743 4444444444443221100 0001111111 345688899987654
No 398
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.00059 Score=73.00 Aligned_cols=47 Identities=9% Similarity=-0.118 Sum_probs=34.6
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+.- .+.+++ |.+|+.++.|-|+++. .++|..|+.+-...+|
T Consensus 129 aLLK~LEEP------p~~~~~-Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 129 SLLKFLEEP------SGGTTA-ILLTENKHQILPTILSRCQVVEFRPLPPESLIQRL 178 (329)
T ss_pred HHHHHhcCC------CCCceE-EEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHH
Confidence 566666653 336666 7788899999999888 8889888855555555
No 399
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.00051 Score=73.27 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=34.1
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.|+..|..... ++.+ |.+|++++.+.+.+.+ .+.|+.|+.+....+|
T Consensus 132 aLLk~LEep~~------~~~~-Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L 181 (325)
T PRK08699 132 SLLKVLEEPPP------QVVF-LLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYL 181 (325)
T ss_pred HHHHHHHhCcC------CCEE-EEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHH
Confidence 45555554322 3555 6789999999999887 8999999877777666
No 400
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00013 Score=76.65 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=40.9
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+++++++++++| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 70 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 4899999999999 559999999999999999995 4567888887765
No 401
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00013 Score=76.13 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=40.8
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
..+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i 74 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT 74 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEec
Confidence 35999999999999 459999999999999999995 3467788887655
No 402
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00012 Score=76.65 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=40.5
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+++++++++.+| +.|+||||+|||||+++|++. +..+.+.+++.++
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 71 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 5899999999999 449999999999999999994 3567888887665
No 403
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00014 Score=76.05 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=41.5
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
...+++++++.+.+| +.|+||||+|||||+++|++. +..+.+.+++.++
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~ 70 (283)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI 70 (283)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 346999999999999 559999999999999999995 4567788887665
No 404
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00013 Score=76.52 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=41.1
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++.
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 72 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDIT 72 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECC
Confidence 5899999999999 559999999999999999995 45678888876653
No 405
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.39 E-value=0.00015 Score=72.87 Aligned_cols=49 Identities=24% Similarity=0.399 Sum_probs=41.4
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++.+++| +.|+||||+|||||+++|++.. ..+.+.+++..+.
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY 70 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH
Confidence 46899999999999 5599999999999999999953 4677888777653
No 406
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=8.6e-05 Score=77.62 Aligned_cols=48 Identities=19% Similarity=0.402 Sum_probs=40.4
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC--C---CeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN--V---PFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~---~~i~v~~~~l~ 58 (640)
.+++++++++++| +.|+||||||||||+++|++... . +.+.+++.++.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~ 75 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT 75 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECC
Confidence 5899999999999 55999999999999999999643 2 67888877653
No 407
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.37 E-value=0.00013 Score=79.44 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=43.5
Q ss_pred ccccccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGS 55 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~ 55 (640)
+...++....++++++++++| +.|+||||||||||+|+|++. +..+.+.+++.
T Consensus 30 ~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~ 86 (382)
T TIGR03415 30 ILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDG 86 (382)
T ss_pred HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCE
Confidence 344456667899999999999 459999999999999999994 45678888774
No 408
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.37 E-value=0.00015 Score=72.67 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=32.7
Q ss_pred cccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEE
Q psy10020 12 YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLS 51 (640)
Q Consensus 12 ~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~ 51 (640)
+++++++.++.| +.|+||||||||||+++|++.. ..+.+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~ 45 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence 578899999999 4499999999999999999943 344443
No 409
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00013 Score=82.65 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=42.5
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
+.+..+++++++++..| +.|+||||||||||+|+|++.. ..+.+.+++.++
T Consensus 15 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i 69 (510)
T PRK09700 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINY 69 (510)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEEC
Confidence 34456899999999999 4599999999999999999954 467788877665
No 410
>KOG0057|consensus
Probab=97.36 E-value=0.0002 Score=78.94 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=56.9
Q ss_pred cccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-CCCeEEecCchhhhhhccchhhhHhhhhh--hccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-NVPFLSMNGSEFIEMIGGLGAARVRTEVV--FLHCRV 80 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--~~p~il 80 (640)
|...+.+++.+++.+|+| +-++|+|||||||++|+|-+.. ..+-+.++|.++..-. ...+|.... .|.+.|
T Consensus 361 y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~----~~SlR~~Ig~VPQd~~L 436 (591)
T KOG0057|consen 361 YGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVS----LESLRQSIGVVPQDSVL 436 (591)
T ss_pred eCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhC----hHHhhhheeEeCCcccc
Confidence 444556999999999999 7799999999999999999844 4688999999886332 223444433 666777
Q ss_pred ccchh
Q psy10020 81 FLHEI 85 (640)
Q Consensus 81 ~idei 85 (640)
|=|-+
T Consensus 437 FndTI 441 (591)
T KOG0057|consen 437 FNDTI 441 (591)
T ss_pred cchhH
Confidence 65543
No 411
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00015 Score=76.22 Aligned_cols=47 Identities=15% Similarity=0.333 Sum_probs=40.5
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++..+
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVI 71 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 5899999999999 559999999999999999995 4467788887765
No 412
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.35 E-value=0.00014 Score=82.25 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=42.1
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+..+++++++++..| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 68 (501)
T PRK10762 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV 68 (501)
T ss_pred CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 4457899999999999 4599999999999999999954 567888877665
No 413
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.35 E-value=0.0013 Score=76.39 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.7
Q ss_pred CceEEEcCCCchHHHHHHHHHhcc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.|+||.|++|||||+++|+|+..+
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhC
Confidence 359999999999999999999865
No 414
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.00015 Score=77.56 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=40.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc------CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA------NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~------~~~~i~v~~~~l~ 58 (640)
..+++++++++.+| +.|+|+||||||||+++|++.. ..+.+.+++.++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL 76 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence 46899999999999 4599999999999999999964 3467777776653
No 415
>PRK08116 hypothetical protein; Validated
Probab=97.35 E-value=0.00039 Score=72.21 Aligned_cols=38 Identities=39% Similarity=0.590 Sum_probs=30.8
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhh
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFI 58 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~ 58 (640)
..|++|+|++|||||.|+.+|+..+ +.+++.++..++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll 154 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL 154 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 3469999999999999999999853 5677777766654
No 416
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.35 E-value=0.00088 Score=71.57 Aligned_cols=69 Identities=25% Similarity=0.259 Sum_probs=44.5
Q ss_pred CCceEEEcCCCchHHHHHHHHHhc---cCCCeEEecCchhhhh-----hccch--------hhhHhhhhhhcccccccch
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGSEFIEM-----IGGLG--------AARVRTEVVFLHCRVFLHE 84 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~~l~~~-----~~~~~--------~~~l~~~f~~~p~il~ide 84 (640)
...++|+|++||||++++++|... .+.+++.++|..+... ..|.. ......+.......||+||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~ 108 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCC
Confidence 445999999999999999999763 3468999998876321 11100 0001111123456788899
Q ss_pred hhhhc
Q psy10020 85 ITIFD 89 (640)
Q Consensus 85 id~l~ 89 (640)
++.+.
T Consensus 109 i~~L~ 113 (326)
T PRK11608 109 LATAP 113 (326)
T ss_pred hhhCC
Confidence 88876
No 417
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00018 Score=74.59 Aligned_cols=47 Identities=26% Similarity=0.308 Sum_probs=38.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecC
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNG 54 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~ 54 (640)
....+++++++.+++| +.|+||||||||||+++|++.. ..+.+.+++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g 85 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 3456889999999999 5599999999999999999953 456666655
No 418
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.34 E-value=0.00065 Score=76.24 Aligned_cols=39 Identities=33% Similarity=0.523 Sum_probs=31.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+...+++.+.+....| ++|+||||||||++++.|++.+.
T Consensus 195 Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 195 GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 3445677777777777 77999999999999999998543
No 419
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.34 E-value=0.00018 Score=72.23 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=40.7
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCch
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSE 56 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~ 56 (640)
...+++++++.+.+| +-|+|+||+|||||+|.||+ .+..+.+.+++.-
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v 90 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV 90 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE
Confidence 347899999999999 55999999999999999999 5567778777653
No 420
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.34 E-value=0.00019 Score=72.22 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=37.5
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEec
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMN 53 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~ 53 (640)
..+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.++
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 68 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVR 68 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEe
Confidence 36899999999999 5599999999999999999954 45667775
No 421
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.33 E-value=0.00034 Score=83.73 Aligned_cols=66 Identities=29% Similarity=0.362 Sum_probs=41.9
Q ss_pred eEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhh-----h-------hccchh-hhHhhhhh-hcccccccchhh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIE-----M-------IGGLGA-ARVRTEVV-FLHCRVFLHEIT 86 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~-----~-------~~~~~~-~~l~~~f~-~~p~il~ideid 86 (640)
++|+||+|+|||+++++||..+ ..+++.++.+.+.. . +.|... ..+..... ...+++++||+|
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeie 621 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIE 621 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChh
Confidence 6799999999999999999855 34677776655421 1 111111 11222222 334799999998
Q ss_pred hhc
Q psy10020 87 IFD 89 (640)
Q Consensus 87 ~l~ 89 (640)
...
T Consensus 622 ka~ 624 (821)
T CHL00095 622 KAH 624 (821)
T ss_pred hCC
Confidence 664
No 422
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.33 E-value=0.00014 Score=74.96 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=41.2
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
..+++++++.+.+| +.|+||||+|||||+++|++. +..+.+.+++.++.
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~ 86 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS 86 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhh
Confidence 46899999999999 559999999999999999995 34677888777654
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.33 E-value=0.00018 Score=63.76 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=35.4
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~ 58 (640)
..++++++.+..| +.|.||||||||||++++. .+.+.+.+.++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~----~G~i~~~g~di~ 48 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI----KRKHRLVGDDNV 48 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh----CCeEEEeeEeHH
Confidence 4577888888887 6699999999999999987 455677776664
No 424
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.33 E-value=0.00019 Score=80.13 Aligned_cols=78 Identities=19% Similarity=0.321 Sum_probs=55.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEI 85 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~idei 85 (640)
..+++++++++.+| +-|+|+|||||||++|+|++ .+..+.+.+++.+ .....+. .+. +....-++|.|..
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~----~~~-~r~~~QmvFQdp~ 377 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGE----LRR-LRRRIQMVFQDPY 377 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccccch----hhh-hhhheEEEEeCcc
Confidence 36789999999999 33999999999999999999 3457788888877 2111111 111 1123456788888
Q ss_pred hhhccchh
Q psy10020 86 TIFDLETK 93 (640)
Q Consensus 86 d~l~~~r~ 93 (640)
.++.++.+
T Consensus 378 ~SLnPr~t 385 (539)
T COG1123 378 SSLNPRMT 385 (539)
T ss_pred cccCcccc
Confidence 88888776
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00017 Score=83.91 Aligned_cols=49 Identities=27% Similarity=0.362 Sum_probs=40.7
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCc
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGS 55 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~ 55 (640)
++...+|+++++.+.+| +.|+||||||||||+|+|++. +..|.+.+++.
T Consensus 11 ~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~ 63 (638)
T PRK10636 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN 63 (638)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence 45567999999999999 569999999999999999995 34666766553
No 426
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.32 E-value=0.00013 Score=70.95 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.3
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~ 43 (640)
..+++++++++++| +.|+||||||||||++++..
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 46789999999999 45999999999999999964
No 427
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00018 Score=76.86 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=40.3
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC------CCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN------VPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~------~~~i~v~~~~l~ 58 (640)
.+++++++++.+| +.|+||||||||||+++|++.+. .+.+.+++.++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~ 76 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQ 76 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECC
Confidence 5899999999999 44999999999999999999653 466777777653
No 428
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00016 Score=81.96 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=42.0
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC----CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN----VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~----~~~i~v~~~~l 57 (640)
.+..+++++++++..| +.|+||||||||||+|+|++... .+.+.+++.++
T Consensus 16 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 4456899999999999 55999999999999999999543 67788877665
No 429
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00019 Score=74.22 Aligned_cols=48 Identities=19% Similarity=0.348 Sum_probs=39.3
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCch
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSE 56 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~ 56 (640)
...+++++++++.+| +.|+||||||||||+++|++.. ..+.+.+++..
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~ 84 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN 84 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcc
Confidence 457899999999999 5599999999999999999954 24567776544
No 430
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00018 Score=76.68 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=40.3
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l 57 (640)
.+++++++.+++| +.|+||||||||||+++|++. +..+.+.+++.++
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~ 90 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYI 90 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEc
Confidence 4899999999999 559999999999999999995 4567888877654
No 431
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.31 E-value=0.00016 Score=81.54 Aligned_cols=50 Identities=24% Similarity=0.189 Sum_probs=40.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+|+|++.. ..+.+.+++..+
T Consensus 14 ~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~ 67 (490)
T PRK10938 14 SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI 67 (490)
T ss_pred CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccc
Confidence 4456899999999999 5599999999999999999954 456666665443
No 432
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.31 E-value=0.002 Score=67.10 Aligned_cols=38 Identities=8% Similarity=-0.077 Sum_probs=29.6
Q ss_pred HHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccccccccc
Q psy10020 271 MKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKL 317 (640)
Q Consensus 271 ~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di 317 (640)
.+|-..|+|..| ++..+++ .+|..+.+.+...| +.+.|
T Consensus 245 ~~i~~~s~G~iG-~l~~ll~-------~aA~~AI~sG~E~I-t~~~l 282 (302)
T PF05621_consen 245 RRIHERSEGLIG-ELSRLLN-------AAAIAAIRSGEERI-TREIL 282 (302)
T ss_pred HHHHHHcCCchH-HHHHHHH-------HHHHHHHhcCCcee-cHHHH
Confidence 466688888777 4666666 68888888888887 88888
No 433
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00019 Score=73.92 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=38.3
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecC
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNG 54 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~ 54 (640)
+++..+++++++.+.+| +.|+||||+|||||+++|++.. ..+.+.+++
T Consensus 20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G 71 (257)
T PRK14246 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71 (257)
T ss_pred cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcC
Confidence 35667999999999999 5599999999999999999954 344444444
No 434
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00018 Score=76.04 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=38.6
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCch
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSE 56 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~ 56 (640)
.+++++++.+.+| +.|+||||||||||+++|++. +..+.+.+++.+
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~ 70 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKD 70 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEecee
Confidence 4899999999999 559999999999999999995 346777776543
No 435
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.0002 Score=73.88 Aligned_cols=50 Identities=14% Similarity=0.373 Sum_probs=39.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l 57 (640)
..+.+++++++.+++| +.|+||||||||||+++|++... .+.+.+++.++
T Consensus 18 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i 76 (261)
T PRK14258 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNI 76 (261)
T ss_pred CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEh
Confidence 3456899999999999 55999999999999999999543 34555655443
No 436
>PF13173 AAA_14: AAA domain
Probab=97.30 E-value=0.0003 Score=64.46 Aligned_cols=66 Identities=23% Similarity=0.162 Sum_probs=42.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccC--CCeEEecCchhhhhhccc--hhhhHhhhhhhcccccccchhhhhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN--VPFLSMNGSEFIEMIGGL--GAARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~~~l~~~~~~~--~~~~l~~~f~~~p~il~ideid~l~ 89 (640)
++|+||.||||||+++.++..+. ...+.++..+........ ....+...+...+.++||||+..+.
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhc
Confidence 67999999999999999998654 566677666554221111 1111111122356899999998774
No 437
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.0002 Score=75.80 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=41.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l 57 (640)
....+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 56 ~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 (305)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 3456899999999999 5599999999999999999964 367777777654
No 438
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.29 E-value=0.00016 Score=65.02 Aligned_cols=29 Identities=45% Similarity=0.823 Sum_probs=24.5
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|.|||||||||+++.|+..++...+.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 57899999999999999999876655544
No 439
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.00022 Score=74.32 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=59.2
Q ss_pred cccccccCcccCCc-eE-EEcCCCchHHHHHHHHHhccCC-------CeEEecCchhhhhhccchhhhHhhhhhhccccc
Q psy10020 10 PEYYQNLGAKVPKG-AL-LLGPPGCGKTLLAKAVATEANV-------PFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRV 80 (640)
Q Consensus 10 ~~~l~~l~l~~~~G-iL-L~Gp~GsGKTtL~r~la~~~~~-------~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il 80 (640)
-.+++++++++.+| ++ |+|.||||||+++++|.+.++. +.+.+++.++... .+..++.+....-+.|
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l----~~~~~~~iRG~~I~mI 93 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL----SEKELRKIRGKEIAMI 93 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC----CHHHHHhhcCceEEEE
Confidence 36899999999999 33 9999999999999999997752 2345555554422 2233445555667889
Q ss_pred ccchhhhhccchh
Q psy10020 81 FLHEITIFDLETK 93 (640)
Q Consensus 81 ~ideid~l~~~r~ 93 (640)
|.|...+|.|-..
T Consensus 94 fQ~p~~sLnPv~~ 106 (316)
T COG0444 94 FQDPMTSLNPVMT 106 (316)
T ss_pred EcCchhhcCChhh
Confidence 9999998887765
No 440
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.29 E-value=0.00018 Score=81.52 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=41.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+..+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++..+
T Consensus 22 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 75 (510)
T PRK15439 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPC 75 (510)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 4457899999999999 4599999999999999999954 467788877654
No 441
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.28 E-value=0.00011 Score=81.24 Aligned_cols=166 Identities=10% Similarity=0.109 Sum_probs=100.0
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccC-CCCCCccchhhhHhhhhhhcccccccccccc
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGS-PIDTSRSHRVLRKWVLSSLLTVNKFASLVCR 358 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~-~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~ 358 (640)
++++++...+.|-+...++..|..|+...+++++++++ +++..-. ......+..+ ..+++++|..+|+|......
T Consensus 248 V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEI---D~l~~kR~~~~sgg~~e~-qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 248 VVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEI---DAIGTKRYDATSGGEKEI-QRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred EecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHH---HHHhccCCCCCCcccHHH-HHHHHHHHHHHhhhcccCCe
Confidence 46677777788888888999999999999999999999 4432211 1111111122 24677999999999765544
Q ss_pred hhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec------cc
Q psy10020 359 QVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS------SL 432 (640)
Q Consensus 359 ~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g------~~ 432 (640)
.+ |+ ++|+.+.++++.++|+ +++.-+.+..|+. ..+..++..+...+. ..+.+.+. ..
T Consensus 324 ~V--------I~--ATNr~d~LDpaLlRpG-Rfd~~I~~~~Pd~---~~R~~Il~~~~~k~~--l~~dvdl~~la~~t~g 387 (438)
T PTZ00361 324 KV--------IM--ATNRIESLDPALIRPG-RIDRKIEFPNPDE---KTKRRIFEIHTSKMT--LAEDVDLEEFIMAKDE 387 (438)
T ss_pred EE--------EE--ecCChHHhhHHhccCC-eeEEEEEeCCCCH---HHHHHHHHHHHhcCC--CCcCcCHHHHHHhcCC
Confidence 43 43 4588999999999996 4444443444432 244555554332221 22333332 24
Q ss_pred cchhhhhHHHHHHHHHHHhchhhhcccCCCCccc
Q psy10020 433 LTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL 466 (640)
Q Consensus 433 ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v 466 (640)
.+||++ .++++.+++.+.+.....+...|++.+
T Consensus 388 ~sgAdI-~~i~~eA~~~Alr~~r~~Vt~~D~~~A 420 (438)
T PTZ00361 388 LSGADI-KAICTEAGLLALRERRMKVTQADFRKA 420 (438)
T ss_pred CCHHHH-HHHHHHHHHHHHHhcCCccCHHHHHHH
Confidence 578888 456666665555444344444445443
No 442
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.28 E-value=0.00031 Score=75.12 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=41.5
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-----CCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-----VPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-----~~~i~v~~~~l~ 58 (640)
..+++++++++.+| +.|+|+||||||||+++|++... .+.+.+++.++.
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~ 84 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREIL 84 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECC
Confidence 46899999999999 55999999999999999999653 577888887664
No 443
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.28 E-value=0.00021 Score=71.32 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=38.3
Q ss_pred cccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 12 YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 12 ~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+.++++.+.+| +.|.||||+|||||+++|++.. ..+.+.+++.++
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 62 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH 62 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 467889999999 5599999999999999999954 467788877655
No 444
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00018 Score=76.87 Aligned_cols=49 Identities=16% Similarity=0.400 Sum_probs=41.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-------CCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-------VPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-------~~~i~v~~~~l~ 58 (640)
+.+++++++++++| +.|+||+|||||||+++|++... .+.+.+++.++.
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 35899999999999 55999999999999999999653 677888887663
No 445
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.0002 Score=80.75 Aligned_cols=51 Identities=24% Similarity=0.297 Sum_probs=42.6
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
+.+..+++++++.+++| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 62 (491)
T PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI 62 (491)
T ss_pred eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEEC
Confidence 34557899999999999 4599999999999999999954 567788887665
No 446
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.27 E-value=0.0002 Score=82.51 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=43.0
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
+.+++++++++++| +.|+||||||||||++.|++. +..|.+.+++.++.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~ 408 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLR 408 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhh
Confidence 46899999999999 679999999999999999995 44688999888764
No 447
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.25 E-value=0.00022 Score=82.99 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=39.5
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecC
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNG 54 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~ 54 (640)
+....+|+++++.+++| +.|+||||||||||+|+|++.. ..+.+.+.+
T Consensus 13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 34567999999999999 5599999999999999999954 456666654
No 448
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.24 E-value=0.00024 Score=75.99 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=41.4
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++.+| +.|+|+||||||||+++|++.. ..+.+.+++.++.
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46899999999999 5599999999999999999954 4677888887654
No 449
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00026 Score=75.66 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=41.2
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++.+| +.|+|+||||||||+++|++.. ..+.+.+++.++.
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~ 80 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL 80 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcC
Confidence 36899999999999 4599999999999999999954 4577888777654
No 450
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00025 Score=72.01 Aligned_cols=48 Identities=27% Similarity=0.507 Sum_probs=39.9
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+++++++++.+| +.|+||||||||||+++|++. +..+.+.+++.++.
T Consensus 13 ~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~ 64 (235)
T cd03299 13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT 64 (235)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcC
Confidence 3799999999999 559999999999999999994 34577778776553
No 451
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00035 Score=77.92 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=51.5
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhhhhhccchhhhHhhhhhhccccccc
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFL 82 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~i 82 (640)
.+..++++++++++| +.|+|+||||||||++.|+|.+ ..+.+.+++.+...... ...+-+..+..|.+.+|-
T Consensus 333 g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~--~~~~k~i~~v~Q~p~lf~ 408 (559)
T COG4988 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP--EAWRKQISWVSQNPYLFA 408 (559)
T ss_pred CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCH--HHHHhHeeeeCCCCcccc
Confidence 347899999999999 5599999999999999999944 57889999887653221 111222334455555654
No 452
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00026 Score=73.82 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=39.9
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+++++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i 71 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence 4899999999999 5599999999999999999943 467788877654
No 453
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00027 Score=70.42 Aligned_cols=43 Identities=23% Similarity=0.452 Sum_probs=36.0
Q ss_pred ccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 15 NLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 15 ~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
++++++.+| +.|+||||+|||||+++|++.. ..+.+.+++.++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 62 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV 62 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 788999999 5599999999999999999954 467777777654
No 454
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.23 E-value=0.00022 Score=78.40 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=44.6
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccCCC-eEEecCchhhhhhccchhhhHhhhhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEANVP-FLSMNGSEFIEMIGGLGAARVRTEVV 74 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~~-~i~v~~~~l~~~~~~~~~~~l~~~f~ 74 (640)
.+++++++++++| +.|+||||||||||++.....+..+ .+.+++.++.... ......++.+|+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~~l~~~~sGg~I~ldg~~~~~~~-~~ai~~LR~VFQ 85 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILAENKRKFSEGYEFFLDATHSFSPN-KNAMETLDEIFD 85 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHhcCCCCCCCCCEEEECCEECCCCC-HHHHHHHHHHHH
Confidence 5688999999999 5599999999999999222244455 5888888775422 223344567777
No 455
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.22 E-value=0.00028 Score=81.01 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=51.9
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC--CCeEEecCchhhhhhccchhhhHhhhhhhcccccccc
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN--VPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLH 83 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~id 83 (640)
++.+++++++.+++| +.|+||+||||||+++.|.+.+. .+.+.+++.++.......-... ..+..|...+|-+
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~--I~~V~Qd~~LF~~ 417 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR--IGIVSQDPLLFSG 417 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh--ccEEcccceeecc
Confidence 457999999999999 55999999999999999999554 5888888887763322221112 2233555555543
No 456
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.22 E-value=0.00023 Score=80.41 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC----CCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN----VPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~----~~~i~v~~~~l 57 (640)
....+++++++++.+| +.|+||||||||||+++|++... .+.+.+++.++
T Consensus 12 ~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~ 67 (500)
T TIGR02633 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPL 67 (500)
T ss_pred CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 4456899999999999 45999999999999999999643 57777877654
No 457
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00025 Score=80.29 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=42.0
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
....+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 15 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i 68 (501)
T PRK11288 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM 68 (501)
T ss_pred CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence 4456899999999999 5599999999999999999954 567888877655
No 458
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.22 E-value=0.0003 Score=73.56 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=37.7
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecC
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNG 54 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~ 54 (640)
+..+++++++.+.+| +.|+||||+|||||+++|++.. ..+.+.+++
T Consensus 49 ~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g 98 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98 (282)
T ss_pred cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 346899999999999 5599999999999999999954 356666544
No 459
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.00025 Score=73.45 Aligned_cols=50 Identities=18% Similarity=0.444 Sum_probs=43.9
Q ss_pred cccccccCcccCCceE--EEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhh
Q psy10020 10 PEYYQNLGAKVPKGAL--LLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIE 59 (640)
Q Consensus 10 ~~~l~~l~l~~~~GiL--L~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~ 59 (640)
..+++++++.+++|-+ ++|.||+|||||+|++.. .+..+.+.+++.++..
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~ 72 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA 72 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEeccc
Confidence 4789999999999933 999999999999999998 6778999999977753
No 460
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.22 E-value=0.00023 Score=84.05 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=43.8
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+.+++++++++++| +.|+||||||||||++.|++. +..|.+.+++.++.
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK 539 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHH
Confidence 356899999999999 669999999999999999994 45788999998775
No 461
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.21 E-value=0.00071 Score=77.86 Aligned_cols=26 Identities=35% Similarity=0.719 Sum_probs=22.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPF 49 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~ 49 (640)
++|+|||||||||+++++|+.++..+
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 67999999999999999999776443
No 462
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.00028 Score=80.35 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=38.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecC
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNG 54 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~ 54 (640)
....+++++++++.+| +.|+||||||||||+|+|++.. ..+.+.+++
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 62 (530)
T PRK15064 12 GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP 62 (530)
T ss_pred CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 4457999999999999 5599999999999999999954 456666654
No 463
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.20 E-value=0.00025 Score=82.77 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=44.3
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~ 58 (640)
+.++++++++++.| +.|+|+||||||||+|.|.+ .+..|.+.+++.++.
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 57999999999999 88999999999999999999 455789999998875
No 464
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0021 Score=68.86 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=37.6
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|+. . .+.+++ |-+|++++.|-|.++. .+.|+.|+.+....+|
T Consensus 127 aLLKtLEE--P----p~~t~f-iL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L 176 (334)
T PRK07993 127 ALLKTLEE--P----PENTWF-FLACREPARLLATLRSRCRLHYLAPPPEQYALTWL 176 (334)
T ss_pred HHHHHhcC--C----CCCeEE-EEEECChhhChHHHHhccccccCCCCCHHHHHHHH
Confidence 67777765 2 457788 8899999999999887 8899999877777777
No 465
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00029 Score=71.26 Aligned_cols=44 Identities=30% Similarity=0.511 Sum_probs=36.4
Q ss_pred cccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 14 QNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 14 ~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 63 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDH 63 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeec
Confidence 4788999999 5599999999999999999954 467788877654
No 466
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.19 E-value=0.00028 Score=72.35 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=38.4
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-CCCeEEecCchh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-NVPFLSMNGSEF 57 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-~~~~i~v~~~~l 57 (640)
..++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 10 ~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i 59 (248)
T PRK03695 10 TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPL 59 (248)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEec
Confidence 3789999999999 4499999999999999999954 356677776654
No 467
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.19 E-value=0.00024 Score=81.99 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=42.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
+.+++++++++++| +.|+|++|||||||++.|++. +..|.+.+++.++.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 46899999999999 669999999999999999994 45688999988775
No 468
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.19 E-value=0.00036 Score=80.50 Aligned_cols=51 Identities=31% Similarity=0.391 Sum_probs=42.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-~~~~i~v~~~~l~ 58 (640)
.++.+++++++.+++| +.|+||||||||||++.|++.. ..|.+.+++.++.
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~ 414 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELR 414 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecc
Confidence 3456899999999999 6699999999999999999954 3567888887664
No 469
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.18 E-value=0.00021 Score=84.03 Aligned_cols=50 Identities=18% Similarity=0.398 Sum_probs=43.7
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+.+++++++++++| +.|+||||||||||++.|++. +..|.+.+++.++.
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 356899999999999 669999999999999999994 45788999988765
No 470
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0021 Score=68.34 Aligned_cols=47 Identities=15% Similarity=0.025 Sum_probs=37.2
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|..- .+.+++ |-+|++++.|-|.++. .+.|..|+.+....+|
T Consensus 126 aLLKtLEEP------p~~~~f-iL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L 175 (325)
T PRK06871 126 ALLKTLEEP------RPNTYF-LLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWL 175 (325)
T ss_pred HHHHHhcCC------CCCeEE-EEEECChHhCchHHHhhceEEeCCCCCHHHHHHHH
Confidence 666776652 457777 8899999999999887 8999999877777777
No 471
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.18 E-value=0.00024 Score=81.98 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=42.7
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
+.+++++++++++| +.|+|+||||||||++.|++. +..+.+.+++.++.
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~ 400 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR 400 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhh
Confidence 46899999999999 669999999999999999994 45678999888765
No 472
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.17 E-value=0.00026 Score=83.56 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=43.3
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
+.+++++++++++| +.|+||+|||||||++.|++. +..|.+.+++.++.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 544 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPRE 544 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHH
Confidence 46899999999999 669999999999999999994 45788999988775
No 473
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0012 Score=73.75 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=51.0
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccc
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEG 259 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (640)
.||..|..- ...|++ |.||-.++.+++.++. ++.|..-+.+-...+| ..+..+ |+
T Consensus 138 ALLKTLEEP------P~hV~F-IlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L-~~i~~~--------------E~ 195 (515)
T COG2812 138 ALLKTLEEP------PSHVKF-ILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHL-AAILDK--------------EG 195 (515)
T ss_pred HHhcccccC------ccCeEE-EEecCCcCcCchhhhhccccccccCCCHHHHHHHH-HHHHHh--------------cC
Confidence 666666542 447788 9999999999999988 6777666655455555 444430 11
Q ss_pred cCCCCcchhcHHHHHhhCCCCCccchhhhhh
Q psy10020 260 RNLNIPASFKMMKKQNFLPQTSTASNVNQSH 290 (640)
Q Consensus 260 ~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~ 290 (640)
... .+-.+..+|+..+| |-+|-..+..
T Consensus 196 I~~---e~~aL~~ia~~a~G-s~RDalslLD 222 (515)
T COG2812 196 INI---EEDALSLIARAAEG-SLRDALSLLD 222 (515)
T ss_pred Ccc---CHHHHHHHHHHcCC-ChhhHHHHHH
Confidence 111 23446677777777 4455555554
No 474
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.16 E-value=0.00031 Score=71.42 Aligned_cols=48 Identities=27% Similarity=0.415 Sum_probs=41.8
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~ 58 (640)
+..+++++++|+| +.++||||+||||++|.|.| .+..+.+.+.+.+-+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf 89 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPF 89 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcc
Confidence 5788999999999 55999999999999999999 456788999887654
No 475
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.16 E-value=0.0016 Score=73.78 Aligned_cols=68 Identities=28% Similarity=0.380 Sum_probs=45.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHhc---cCCCeEEecCchhhhhh-----ccch--------hhhHhhhhh-hcccccccc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGSEFIEMI-----GGLG--------AARVRTEVV-FLHCRVFLH 83 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~~l~~~~-----~~~~--------~~~l~~~f~-~~p~il~id 83 (640)
+..++|+|++||||++++++|... .+.+++.++|..+.... .|.. ..... .|. .....||+|
T Consensus 210 ~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g-~~~~a~gGtL~ld 288 (509)
T PRK05022 210 DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSG-KFELADGGTLFLD 288 (509)
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCc-chhhcCCCEEEec
Confidence 445899999999999999999874 45689999988764211 1100 00001 122 344678999
Q ss_pred hhhhhc
Q psy10020 84 EITIFD 89 (640)
Q Consensus 84 eid~l~ 89 (640)
|++.+.
T Consensus 289 eI~~L~ 294 (509)
T PRK05022 289 EIGELP 294 (509)
T ss_pred ChhhCC
Confidence 999876
No 476
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.16 E-value=0.00028 Score=73.51 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=41.4
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-~~~~i~v~~~~l~ 58 (640)
+.+++++++.+.+| +.|+||+|+|||||+++|++.. ..+.+.+++.++.
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~ 68 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWN 68 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhh
Confidence 46899999999999 5599999999999999999943 4577888877654
No 477
>PRK08118 topology modulation protein; Reviewed
Probab=97.16 E-value=0.0003 Score=67.77 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=28.2
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecC
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNG 54 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~ 54 (640)
.++++|||||||||+++.|+..++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 47899999999999999999998888877753
No 478
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.15 E-value=0.00031 Score=70.42 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=47.4
Q ss_pred ccccccccccccccCcccCCc-eE-EEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKG-AL-LLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~G-iL-L~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
+...+++..+++++++.++.| ++ |.||||+||||..|.|.+. +..+.+.+++..+.
T Consensus 8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~ 67 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS 67 (300)
T ss_pred chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh
Confidence 445678889999999999999 33 9999999999999999994 45688999887764
No 479
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00032 Score=75.78 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=36.6
Q ss_pred ccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 15 NLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 15 ~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~ 63 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF 63 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 789999999 5599999999999999999953 4677888776653
No 480
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.15 E-value=0.00033 Score=75.74 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=36.9
Q ss_pred ccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 15 NLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 15 ~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
++++++.+| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~ 62 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLF 62 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 789999998 4599999999999999999954 4677888877653
No 481
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.15 E-value=0.00036 Score=80.02 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=37.5
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEec
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMN 53 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~ 53 (640)
+..+++++++.++.| +.|+||||||||||+++|++.. ..|.+.++
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~ 67 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA 67 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec
Confidence 457999999999999 5599999999999999999954 34555554
No 482
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.15 E-value=0.00036 Score=66.42 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=43.7
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEM 60 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~ 60 (640)
-.+++++++.+.+| +-|+||||||||||+-.+|+ .+..+.+.+-+..+...
T Consensus 23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~l 77 (228)
T COG4181 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL 77 (228)
T ss_pred eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhc
Confidence 36788899999999 66999999999999999999 56778899988887643
No 483
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.15 E-value=0.00023 Score=81.40 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=42.1
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
+.+++++++.+++| +.|+||||||||||++.|++. +..+.+.+++.++.
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~ 388 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT 388 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC
Confidence 45899999999999 669999999999999999994 45678888887654
No 484
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.14 E-value=0.00084 Score=71.98 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.2
Q ss_pred CceEEEcCCCchHHHHHHHHHhcc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.|++|.||+||||||++|.++..+
T Consensus 39 ~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 39 GGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999999998744
No 485
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.13 E-value=0.00038 Score=78.55 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=39.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC---CCeEEecCch
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN---VPFLSMNGSE 56 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~---~~~i~v~~~~ 56 (640)
+...+++++++.+.+| +.|+||||||||||+++|++... .+.+.+++..
T Consensus 271 ~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~ 324 (490)
T PRK10938 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR 324 (490)
T ss_pred CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc
Confidence 3456899999999999 44999999999999999999543 4677777654
No 486
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.12 E-value=0.00033 Score=82.67 Aligned_cols=49 Identities=20% Similarity=0.355 Sum_probs=43.0
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||++.|++. +..+.+.+++.++.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLV 546 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence 36899999999999 669999999999999999994 45688999988775
No 487
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.12 E-value=0.0007 Score=61.55 Aligned_cols=22 Identities=45% Similarity=0.774 Sum_probs=19.0
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
++++||+|+|||++++.++...
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999855
No 488
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.12 E-value=0.00032 Score=79.90 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=42.0
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
.+++++++.+++| +.|+||+|||||||++.|++. +..+.+.+++.++.
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLA 387 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehh
Confidence 5899999999999 669999999999999999994 45678888888765
No 489
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.11 E-value=0.00033 Score=80.61 Aligned_cols=49 Identities=24% Similarity=0.459 Sum_probs=42.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
+.+++++++++++| +.|+||||||||||++.|++. +..+.+.+++.++.
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA 405 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 35899999999999 669999999999999999994 45788999887764
No 490
>KOG0055|consensus
Probab=97.10 E-value=0.00094 Score=80.40 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=43.4
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFIE 59 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~~ 59 (640)
..+|++++++++.| +-|+|||||||||+...|-..+ ..+.+.+++.++.+
T Consensus 1003 ~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ 1056 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKD 1056 (1228)
T ss_pred chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccccc
Confidence 37999999999999 6699999999999999998855 57889999888753
No 491
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.10 E-value=0.00038 Score=76.22 Aligned_cols=52 Identities=17% Similarity=0.407 Sum_probs=44.8
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEM 60 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~ 60 (640)
...++++++|.++.| +-++||||||||||+|.|.+ .+..+.+.+++.++..+
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qW 403 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQW 403 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcC
Confidence 457899999999999 44999999999999999999 45678999999988644
No 492
>KOG0055|consensus
Probab=97.09 E-value=0.00039 Score=83.61 Aligned_cols=54 Identities=28% Similarity=0.592 Sum_probs=46.2
Q ss_pred ccccc--ccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhh
Q psy10020 6 YLKRP--EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIE 59 (640)
Q Consensus 6 ~l~~~--~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~ 59 (640)
|..+| .+++++++.+|.| +.|+|||||||||++..|.+ .+..+.+.+++.++..
T Consensus 360 YPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~ 419 (1228)
T KOG0055|consen 360 YPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRN 419 (1228)
T ss_pred CCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchh
Confidence 44444 7999999999999 66999999999999999999 4557889999988864
No 493
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.09 E-value=0.0016 Score=71.79 Aligned_cols=68 Identities=26% Similarity=0.399 Sum_probs=47.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhh-------------ccchhhhHhhhhh-hcccccccc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMI-------------GGLGAARVRTEVV-FLHCRVFLH 83 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~-------------~~~~~~~l~~~f~-~~p~il~id 83 (640)
...++|+|++||||-+++|+|-... +.||+.++|..+.... .|....+. -.|+ -....||+|
T Consensus 164 ~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~-G~fE~A~GGTLfLD 242 (464)
T COG2204 164 DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRI-GRFEQANGGTLFLD 242 (464)
T ss_pred CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccC-cceeEcCCceEEee
Confidence 3449999999999999999998844 4699999998765221 11111111 1344 344789999
Q ss_pred hhhhhc
Q psy10020 84 EITIFD 89 (640)
Q Consensus 84 eid~l~ 89 (640)
||..+.
T Consensus 243 EI~~mp 248 (464)
T COG2204 243 EIGEMP 248 (464)
T ss_pred ccccCC
Confidence 998776
No 494
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.09 E-value=0.00046 Score=79.07 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=37.3
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEec
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMN 53 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~ 53 (640)
...+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.++
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~ 65 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPA 65 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec
Confidence 456999999999999 5599999999999999999954 35555554
No 495
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.09 E-value=0.00037 Score=76.27 Aligned_cols=166 Identities=10% Similarity=0.057 Sum_probs=99.6
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCC-CCccchhhhHhhhhhhcccccccccccc
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPID-TSRSHRVLRKWVLSSLLTVNKFASLVCR 358 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~-~~~~~~~~~~~~~qlL~~~d~f~~~~~~ 358 (640)
++++++...+.|-+...++..|..++...+++++++|+ +++....... ...+..+ ..+++++|.++|+|......
T Consensus 196 v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEi---D~l~~~r~~~~~~~~~~~-~~~l~~lL~~ld~~~~~~~v 271 (389)
T PRK03992 196 VVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEI---DAIAAKRTDSGTSGDREV-QRTLMQLLAEMDGFDPRGNV 271 (389)
T ss_pred eehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEech---hhhhcccccCCCCccHHH-HHHHHHHHHhccccCCCCCE
Confidence 46677777777777888899999999999999999999 4443221111 1111122 24677999999999765544
Q ss_pred hhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec------cc
Q psy10020 359 QVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS------SL 432 (640)
Q Consensus 359 ~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g------~~ 432 (640)
. +...+|+.+.++++.++|+ +++.-+.+..|+. ..|.+++..+...+ ...+.+.+. ..
T Consensus 272 ~----------VI~aTn~~~~ld~allRpg-Rfd~~I~v~~P~~---~~R~~Il~~~~~~~--~~~~~~~~~~la~~t~g 335 (389)
T PRK03992 272 K----------IIAATNRIDILDPAILRPG-RFDRIIEVPLPDE---EGRLEILKIHTRKM--NLADDVDLEELAELTEG 335 (389)
T ss_pred E----------EEEecCChhhCCHHHcCCc-cCceEEEECCCCH---HHHHHHHHHHhccC--CCCCcCCHHHHHHHcCC
Confidence 3 3344578899999999996 5554444444442 23444444332211 112223332 24
Q ss_pred cchhhhhHHHHHHHHHHHhchhhhcccCCCCccc
Q psy10020 433 LTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL 466 (640)
Q Consensus 433 ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v 466 (640)
.+|+++ .+.++.+++.+.++....+.+.|+..+
T Consensus 336 ~sgadl-~~l~~eA~~~a~~~~~~~i~~~d~~~A 368 (389)
T PRK03992 336 ASGADL-KAICTEAGMFAIRDDRTEVTMEDFLKA 368 (389)
T ss_pred CCHHHH-HHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 567888 567777776666654444444444444
No 496
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00053 Score=68.95 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=39.1
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC--CCeEEecCc
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN--VPFLSMNGS 55 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~~ 55 (640)
...+.++++++..+..| ..|+||||+|||||++.+++... .+.+.+-+.
T Consensus 41 r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~ 93 (257)
T COG1119 41 RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93 (257)
T ss_pred ECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeee
Confidence 35678999999999999 77999999999999999999443 344444443
No 497
>KOG0056|consensus
Probab=97.08 E-value=0.00066 Score=73.76 Aligned_cols=74 Identities=18% Similarity=0.358 Sum_probs=55.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh--ccCCCeEEecCchhhhhhccchhhhHhhhhh--hcccccc
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT--EANVPFLSMNGSEFIEMIGGLGAARVRTEVV--FLHCRVF 81 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~--~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--~~p~il~ 81 (640)
...++++++++.++.| +.|+||||+||||++|.+-. ..+.+.+.+++.++..- +...++.... .|.+++|
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv----t~~SLRs~IGVVPQDtvLF 624 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV----TQSSLRSSIGVVPQDTVLF 624 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHH----HHHHHHHhcCcccCcceee
Confidence 3468999999999999 56999999999999999998 44578899999988632 1223333332 6678887
Q ss_pred cchh
Q psy10020 82 LHEI 85 (640)
Q Consensus 82 idei 85 (640)
-|-+
T Consensus 625 NdTI 628 (790)
T KOG0056|consen 625 NDTI 628 (790)
T ss_pred ccee
Confidence 7644
No 498
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.07 E-value=0.00043 Score=78.71 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=38.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc----cCCCeEEec
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE----ANVPFLSMN 53 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~----~~~~~i~v~ 53 (640)
....+++++++.+.+| +.|+||||||||||+++|++. +..+.+.++
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 4457999999999999 559999999999999999996 345666664
No 499
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.00045 Score=78.76 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=37.6
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecC
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNG 54 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~ 54 (640)
.+..+++++++.+.+| +.|+||||||||||+++|++.. ..+.+.+++
T Consensus 330 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~ 380 (530)
T PRK15064 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE 380 (530)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 3446899999999999 5599999999999999999954 345555543
No 500
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.0049 Score=65.50 Aligned_cols=47 Identities=9% Similarity=-0.041 Sum_probs=35.7
Q ss_pred hHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 183 ILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 183 ~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
.||..|..- ...+++ |-+|++++.|-|.++. .+.|+.|+.+....+|
T Consensus 132 aLLKtLEEP------p~~~~f-iL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L 181 (319)
T PRK08769 132 ALLKTLEEP------SPGRYL-WLISAQPARLPATIRSRCQRLEFKLPPAHEALAWL 181 (319)
T ss_pred HHHHHhhCC------CCCCeE-EEEECChhhCchHHHhhheEeeCCCcCHHHHHHHH
Confidence 666666553 336666 7789999999999988 8899989866666666
Done!