Query psy10020
Match_columns 640
No_of_seqs 559 out of 4283
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 15:50:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.8E-48 6.1E-53 429.9 17.7 415 3-597 31-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 8.9E-47 3E-51 418.6 19.4 412 3-600 46-471 (499)
3 4b4t_J 26S protease regulatory 100.0 1.4E-36 4.7E-41 325.9 9.4 216 5-332 166-395 (405)
4 3cf2_A TER ATPase, transitiona 100.0 2.9E-35 1E-39 340.8 13.5 327 6-453 223-701 (806)
5 4b4t_M 26S protease regulatory 100.0 4.2E-35 1.4E-39 318.7 10.9 217 3-331 197-427 (434)
6 4b4t_I 26S protease regulatory 100.0 1.9E-35 6.5E-40 317.9 6.9 215 5-331 200-428 (437)
7 4b4t_H 26S protease regulatory 100.0 7.3E-35 2.5E-39 316.1 8.7 218 5-334 227-458 (467)
8 4b4t_L 26S protease subunit RP 100.0 1.2E-34 4.2E-39 315.3 8.5 213 5-329 199-425 (437)
9 4b4t_K 26S protease regulatory 100.0 1.1E-33 3.9E-38 307.2 11.2 217 4-328 189-416 (428)
10 3cf2_A TER ATPase, transitiona 100.0 1.5E-30 5.1E-35 301.5 9.4 221 4-332 494-749 (806)
11 2x8a_A Nuclear valosin-contain 99.9 1.6E-26 5.6E-31 238.4 11.0 224 3-333 26-271 (274)
12 1lv7_A FTSH; alpha/beta domain 99.9 3.4E-24 1.2E-28 218.2 13.1 219 4-330 28-256 (257)
13 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.5E-23 5.3E-28 221.1 13.5 194 6-306 31-233 (322)
14 3cf0_A Transitional endoplasmi 99.9 4.5E-24 1.5E-28 223.0 9.2 186 7-290 35-230 (301)
15 1ixz_A ATP-dependent metallopr 99.9 1.4E-23 4.9E-28 213.1 11.9 209 6-322 34-252 (254)
16 3eie_A Vacuolar protein sortin 99.9 5.5E-23 1.9E-27 216.7 13.1 193 7-306 38-238 (322)
17 2qp9_X Vacuolar protein sortin 99.9 1.6E-22 5.4E-27 216.2 14.2 192 8-306 72-271 (355)
18 1iy2_A ATP-dependent metallopr 99.9 1.4E-22 4.8E-27 208.9 13.3 210 6-323 58-277 (278)
19 2di4_A Zinc protease, cell div 99.9 1.4E-23 4.9E-28 209.6 4.8 196 328-598 2-202 (238)
20 3h4m_A Proteasome-activating n 99.9 9.5E-23 3.3E-27 210.2 10.6 214 7-328 37-260 (285)
21 2qz4_A Paraplegin; AAA+, SPG7, 99.9 3E-23 1E-27 210.8 6.8 228 5-337 23-260 (262)
22 2zan_A Vacuolar protein sortin 99.9 4.2E-22 1.4E-26 219.1 11.0 192 8-306 155-355 (444)
23 2ce7_A Cell division protein F 99.9 6.9E-23 2.4E-27 225.9 2.9 275 280-583 80-374 (476)
24 3t15_A Ribulose bisphosphate c 99.8 5.7E-22 1.9E-26 206.3 7.7 175 15-288 30-223 (293)
25 2r62_A Cell division protease 99.8 6.2E-23 2.1E-27 209.9 0.1 222 6-333 29-260 (268)
26 1ypw_A Transitional endoplasmi 99.8 2E-21 6.8E-26 228.1 12.9 148 7-236 224-381 (806)
27 3hu3_A Transitional endoplasmi 99.8 1.8E-21 6.3E-26 215.9 11.4 195 7-309 224-428 (489)
28 1ypw_A Transitional endoplasmi 99.8 2.3E-22 7.7E-27 236.1 4.1 196 7-307 497-702 (806)
29 3d8b_A Fidgetin-like protein 1 99.8 5.1E-20 1.7E-24 196.9 13.5 215 10-332 107-340 (357)
30 3b9p_A CG5977-PA, isoform A; A 99.8 7.4E-20 2.5E-24 189.8 13.1 214 10-330 44-276 (297)
31 3vfd_A Spastin; ATPase, microt 99.8 4.7E-19 1.6E-23 191.4 13.0 212 10-329 138-368 (389)
32 2dhr_A FTSH; AAA+ protein, hex 99.8 6.4E-20 2.2E-24 203.4 1.5 272 280-583 95-387 (499)
33 2di4_A Zinc protease, cell div 99.7 2.4E-17 8.2E-22 164.6 3.8 89 494-583 16-119 (238)
34 2c9o_A RUVB-like 1; hexameric 99.5 1.5E-16 5.3E-21 175.3 -3.0 76 17-93 59-143 (456)
35 1g41_A Heat shock protein HSLU 99.4 1.5E-13 5.2E-18 149.6 7.1 124 20-229 49-180 (444)
36 3m6a_A ATP-dependent protease 99.4 2.8E-13 9.6E-18 152.4 8.6 80 13-92 99-191 (543)
37 1d2n_A N-ethylmaleimide-sensit 99.3 5.6E-12 1.9E-16 128.8 8.3 76 18-93 61-141 (272)
38 3syl_A Protein CBBX; photosynt 99.3 4E-12 1.4E-16 132.0 7.1 71 23-93 69-147 (309)
39 3uk6_A RUVB-like 2; hexameric 99.2 2.9E-11 9.9E-16 128.6 11.1 90 209-326 238-330 (368)
40 3pfi_A Holliday junction ATP-d 99.2 1.5E-10 5E-15 121.9 13.0 63 21-89 55-119 (338)
41 2z4s_A Chromosomal replication 99.1 1.8E-10 6E-15 126.3 13.4 70 21-90 130-208 (440)
42 1ofh_A ATP-dependent HSL prote 99.1 1.9E-10 6.6E-15 118.7 11.8 74 20-93 49-133 (310)
43 3hws_A ATP-dependent CLP prote 99.1 5.9E-10 2E-14 118.8 12.3 74 20-93 50-133 (363)
44 1jbk_A CLPB protein; beta barr 99.0 8.4E-11 2.9E-15 111.6 3.5 73 20-92 42-131 (195)
45 2v1u_A Cell division control p 99.0 5.5E-10 1.9E-14 118.6 9.5 37 20-56 43-88 (387)
46 1l8q_A Chromosomal replication 99.0 1.6E-09 5.5E-14 113.4 12.6 70 21-90 37-112 (324)
47 1hqc_A RUVB; extended AAA-ATPa 99.0 4.8E-10 1.7E-14 116.8 7.7 64 20-89 37-103 (324)
48 3bos_A Putative DNA replicatio 99.0 1.9E-09 6.6E-14 106.6 11.7 64 21-90 52-118 (242)
49 1in4_A RUVB, holliday junction 99.0 1.1E-09 3.9E-14 115.4 10.3 78 7-90 28-116 (334)
50 2p65_A Hypothetical protein PF 98.9 3.9E-10 1.3E-14 106.8 3.8 72 21-92 43-131 (187)
51 1njg_A DNA polymerase III subu 98.9 5.5E-09 1.9E-13 102.5 12.1 72 199-290 155-229 (250)
52 3pvs_A Replication-associated 98.9 2.1E-09 7.1E-14 117.9 9.7 68 22-89 51-119 (447)
53 3u61_B DNA polymerase accessor 98.9 2.8E-09 9.7E-14 111.4 10.0 67 20-89 47-118 (324)
54 4b4t_J 26S protease regulatory 98.9 3.4E-10 1.2E-14 121.4 1.3 176 271-466 200-385 (405)
55 2chg_A Replication factor C sm 98.8 1.1E-08 3.9E-13 99.1 10.9 65 23-89 40-115 (226)
56 4fcw_A Chaperone protein CLPB; 98.8 3.9E-09 1.3E-13 109.3 7.9 67 23-89 49-132 (311)
57 2r44_A Uncharacterized protein 98.8 7E-09 2.4E-13 108.8 9.8 69 21-89 46-122 (331)
58 1sxj_A Activator 1 95 kDa subu 98.8 7.3E-09 2.5E-13 115.7 9.9 71 20-90 76-162 (516)
59 3pxg_A Negative regulator of g 98.8 6.4E-09 2.2E-13 114.8 8.7 60 21-83 201-274 (468)
60 2qby_A CDC6 homolog 1, cell di 98.8 4.2E-09 1.4E-13 111.6 7.0 35 21-55 45-85 (386)
61 1r6b_X CLPA protein; AAA+, N-t 98.8 4.6E-09 1.6E-13 122.7 7.7 74 20-93 206-295 (758)
62 1g8p_A Magnesium-chelatase 38 98.8 1.5E-08 5.2E-13 106.5 9.6 26 21-46 45-70 (350)
63 1sxj_D Activator 1 41 kDa subu 98.8 3.5E-08 1.2E-12 103.7 12.3 34 23-56 60-99 (353)
64 1qvr_A CLPB protein; coiled co 98.7 4.7E-09 1.6E-13 124.2 5.1 73 21-93 191-280 (854)
65 3pxi_A Negative regulator of g 98.7 3.3E-08 1.1E-12 115.4 12.2 67 23-89 523-592 (758)
66 2qby_B CDC6 homolog 3, cell di 98.7 1.1E-08 3.8E-13 108.9 7.4 36 21-56 45-91 (384)
67 4b4t_I 26S protease regulatory 98.7 1.2E-09 3.9E-14 117.8 -0.4 167 280-466 247-419 (437)
68 1um8_A ATP-dependent CLP prote 98.7 1.2E-08 3.9E-13 109.2 7.3 73 21-93 72-154 (376)
69 3kw6_A 26S protease regulatory 98.7 6.9E-09 2.4E-13 85.6 3.4 54 265-328 22-75 (78)
70 3n70_A Transport activator; si 98.7 2.9E-08 9.8E-13 91.6 7.5 62 21-89 24-89 (145)
71 3vlf_B 26S protease regulatory 98.7 1.1E-08 3.6E-13 86.7 3.9 62 265-336 20-81 (88)
72 1fnn_A CDC6P, cell division co 98.7 4.9E-08 1.7E-12 103.8 10.0 34 23-56 46-83 (389)
73 4b4t_M 26S protease regulatory 98.7 3.1E-09 1.1E-13 115.5 0.4 176 271-466 233-418 (434)
74 3nbx_X ATPase RAVA; AAA+ ATPas 98.7 8.6E-08 2.9E-12 106.3 11.8 26 21-46 41-66 (500)
75 2krk_A 26S protease regulatory 98.6 7.8E-09 2.7E-13 87.0 2.5 55 265-329 30-84 (86)
76 4b4t_H 26S protease regulatory 98.6 4.5E-09 1.5E-13 114.3 0.7 167 280-466 274-446 (467)
77 3pxi_A Negative regulator of g 98.6 7.4E-08 2.5E-12 112.5 10.5 61 20-83 200-274 (758)
78 4b4t_K 26S protease regulatory 98.6 5.8E-09 2E-13 113.2 1.0 177 271-466 224-410 (428)
79 2chq_A Replication factor C sm 98.6 9.4E-08 3.2E-12 98.7 9.4 37 199-236 131-170 (319)
80 1r6b_X CLPA protein; AAA+, N-t 98.6 7.3E-08 2.5E-12 112.5 9.5 67 23-89 490-570 (758)
81 3te6_A Regulatory protein SIR3 98.6 7E-08 2.4E-12 100.8 8.2 71 19-89 43-145 (318)
82 1ojl_A Transcriptional regulat 98.6 1.2E-07 4E-12 98.7 9.7 70 20-89 24-109 (304)
83 2bjv_A PSP operon transcriptio 98.6 1.9E-07 6.5E-12 94.6 11.0 69 21-89 29-113 (265)
84 4b4t_L 26S protease subunit RP 98.6 6.3E-09 2.1E-13 113.2 -0.2 166 280-465 246-417 (437)
85 1jr3_A DNA polymerase III subu 98.6 2.6E-07 8.9E-12 97.8 12.1 72 199-290 148-222 (373)
86 3f9v_A Minichromosome maintena 98.6 3.6E-08 1.2E-12 111.9 5.4 68 23-90 329-405 (595)
87 1sxj_E Activator 1 40 kDa subu 98.5 1.8E-07 6E-12 98.6 9.7 36 200-236 164-202 (354)
88 3co5_A Putative two-component 98.5 7.3E-08 2.5E-12 88.7 5.2 62 20-89 26-88 (143)
89 3k1j_A LON protease, ATP-depen 98.5 1.2E-07 4.2E-12 107.8 7.8 40 7-46 44-85 (604)
90 1a5t_A Delta prime, HOLB; zinc 98.5 5.1E-07 1.7E-11 95.0 11.1 38 198-236 136-176 (334)
91 1sxj_B Activator 1 37 kDa subu 98.4 2.3E-07 8E-12 95.9 7.7 37 199-236 136-175 (323)
92 1iqp_A RFCS; clamp loader, ext 98.4 7.3E-07 2.5E-11 92.3 11.0 65 23-89 48-123 (327)
93 1qvr_A CLPB protein; coiled co 98.4 5.1E-07 1.8E-11 106.8 10.2 67 23-89 590-673 (854)
94 1sxj_C Activator 1 40 kDa subu 98.4 4.8E-07 1.6E-11 95.2 8.6 80 8-89 29-123 (340)
95 3aji_B S6C, proteasome (prosom 98.4 1.4E-07 4.6E-12 78.7 2.7 57 265-331 20-76 (83)
96 3cmw_A Protein RECA, recombina 98.4 2E-07 6.8E-12 115.4 5.1 74 20-93 1079-1177(1706)
97 2dzn_B 26S protease regulatory 98.3 1E-07 3.5E-12 79.4 0.9 57 265-331 17-73 (82)
98 4akg_A Glutathione S-transfera 98.3 7.2E-07 2.5E-11 115.1 8.1 37 199-236 1383-1431(2695)
99 3ec2_A DNA replication protein 98.3 4.3E-07 1.5E-11 86.4 4.5 75 14-88 31-112 (180)
100 2kjq_A DNAA-related protein; s 98.2 1.7E-06 5.6E-11 80.4 5.6 56 23-89 38-96 (149)
101 3fvq_A Fe(3+) IONS import ATP- 98.0 1.3E-06 4.6E-11 92.5 2.2 52 7-58 14-69 (359)
102 2vhj_A Ntpase P4, P4; non- hyd 98.0 1.9E-06 6.4E-11 89.7 3.1 68 24-92 126-198 (331)
103 4g1u_C Hemin import ATP-bindin 98.0 1.8E-06 6.3E-11 88.0 2.3 52 7-58 21-76 (266)
104 3gfo_A Cobalt import ATP-bindi 97.9 2E-06 7E-11 88.0 1.9 48 10-57 21-72 (275)
105 2gno_A DNA polymerase III, gam 97.9 1.2E-05 4.3E-10 83.4 7.4 62 23-89 20-95 (305)
106 2pcj_A ABC transporter, lipopr 97.9 3.6E-06 1.2E-10 83.5 2.4 50 8-57 15-68 (224)
107 1w5s_A Origin recognition comp 97.9 1.2E-05 4E-10 86.1 6.5 23 23-45 52-76 (412)
108 1svm_A Large T antigen; AAA+ f 97.9 3.5E-06 1.2E-10 90.0 2.4 72 11-90 157-230 (377)
109 1mv5_A LMRA, multidrug resista 97.9 4.1E-06 1.4E-10 84.2 2.6 50 9-58 14-67 (243)
110 1g6h_A High-affinity branched- 97.9 4.9E-06 1.7E-10 84.3 3.1 50 8-57 18-71 (257)
111 3rlf_A Maltose/maltodextrin im 97.9 3.2E-06 1.1E-10 90.3 1.8 52 7-58 13-68 (381)
112 1b0u_A Histidine permease; ABC 97.9 4.8E-06 1.6E-10 84.6 3.0 50 8-57 17-70 (262)
113 3tif_A Uncharacterized ABC tra 97.9 5.8E-06 2E-10 82.6 3.3 48 11-58 19-70 (235)
114 2olj_A Amino acid ABC transpor 97.8 5.5E-06 1.9E-10 84.2 3.0 50 8-57 35-88 (263)
115 2ff7_A Alpha-hemolysin translo 97.8 3.6E-06 1.2E-10 84.8 1.5 50 9-58 21-74 (247)
116 2ixe_A Antigen peptide transpo 97.8 4.8E-06 1.6E-10 85.1 2.4 49 10-58 32-84 (271)
117 1ji0_A ABC transporter; ATP bi 97.8 5.6E-06 1.9E-10 83.0 2.6 51 8-58 17-71 (240)
118 1sgw_A Putative ABC transporte 97.8 6.6E-06 2.3E-10 81.1 2.9 49 8-57 21-73 (214)
119 3nh6_A ATP-binding cassette SU 97.8 4.7E-06 1.6E-10 86.6 1.6 50 9-58 66-119 (306)
120 1vpl_A ABC transporter, ATP-bi 97.8 7.8E-06 2.7E-10 82.8 3.1 51 8-58 26-80 (256)
121 2ihy_A ABC transporter, ATP-bi 97.8 7.1E-06 2.4E-10 84.2 2.8 50 8-57 32-85 (279)
122 2yyz_A Sugar ABC transporter, 97.8 9.6E-06 3.3E-10 86.1 3.2 51 8-58 14-68 (359)
123 2it1_A 362AA long hypothetical 97.7 1E-05 3.5E-10 85.9 3.3 51 8-58 14-68 (362)
124 2zu0_C Probable ATP-dependent 97.7 9.3E-06 3.2E-10 82.7 2.8 51 8-58 31-87 (267)
125 1z47_A CYSA, putative ABC-tran 97.7 9.8E-06 3.3E-10 85.9 3.0 51 8-58 26-80 (355)
126 1v43_A Sugar-binding transport 97.7 1.1E-05 3.8E-10 86.0 3.2 51 8-58 22-76 (372)
127 3d31_A Sulfate/molybdate ABC t 97.7 1.2E-05 4.1E-10 85.0 3.2 50 8-58 12-65 (348)
128 1g29_1 MALK, maltose transport 97.7 1.1E-05 3.8E-10 86.1 2.8 51 8-58 14-68 (372)
129 1oxx_K GLCV, glucose, ABC tran 97.7 1E-05 3.5E-10 85.7 2.5 51 8-58 14-70 (353)
130 3gd7_A Fusion complex of cysti 97.7 7.5E-06 2.6E-10 87.9 1.3 50 9-58 33-85 (390)
131 2d2e_A SUFC protein; ABC-ATPas 97.7 1E-05 3.6E-10 81.5 2.2 51 8-58 14-70 (250)
132 2qi9_C Vitamin B12 import ATP- 97.7 9.2E-06 3.1E-10 81.9 1.6 48 11-58 14-64 (249)
133 2yz2_A Putative ABC transporte 97.7 1.6E-05 5.3E-10 81.0 3.0 48 10-57 20-71 (266)
134 2cbz_A Multidrug resistance-as 97.7 1.5E-05 5.1E-10 79.7 2.7 45 10-54 18-66 (237)
135 2w58_A DNAI, primosome compone 97.6 1.7E-05 5.9E-10 76.4 2.7 68 22-89 55-128 (202)
136 2pze_A Cystic fibrosis transme 97.6 1.9E-05 6.6E-10 78.5 3.0 46 9-54 20-69 (229)
137 2ghi_A Transport protein; mult 97.6 1.5E-05 5E-10 80.9 2.0 48 11-58 34-84 (260)
138 3tui_C Methionine import ATP-b 97.6 2.4E-05 8.3E-10 83.0 3.1 48 11-58 42-93 (366)
139 1zp6_A Hypothetical protein AT 97.6 4.8E-05 1.6E-09 72.5 4.8 39 20-58 6-46 (191)
140 3vaa_A Shikimate kinase, SK; s 97.5 3.7E-05 1.3E-09 74.2 3.3 43 10-52 12-56 (199)
141 2pjz_A Hypothetical protein ST 97.5 3.4E-05 1.2E-09 78.4 2.9 48 10-58 18-68 (263)
142 1z6g_A Guanylate kinase; struc 97.5 4.5E-05 1.5E-09 75.0 3.7 43 9-52 9-53 (218)
143 2nq2_C Hypothetical ABC transp 97.5 5.8E-05 2E-09 76.2 3.7 38 9-46 17-56 (253)
144 1htw_A HI0065; nucleotide-bind 97.4 2.5E-05 8.5E-10 73.2 0.7 48 10-57 20-70 (158)
145 2bbs_A Cystic fibrosis transme 97.4 5E-05 1.7E-09 78.3 2.3 45 10-54 51-99 (290)
146 2onk_A Molybdate/tungstate ABC 97.4 6.5E-05 2.2E-09 75.3 2.8 47 12-58 14-63 (240)
147 2r2a_A Uncharacterized protein 97.3 0.00021 7.1E-09 69.5 5.8 70 23-92 7-103 (199)
148 3b5x_A Lipid A export ATP-bind 97.3 9.2E-05 3.2E-09 83.7 3.5 49 10-58 356-408 (582)
149 2eyu_A Twitching motility prot 97.3 0.00012 4.2E-09 74.1 3.9 75 10-86 14-108 (261)
150 3qf4_B Uncharacterized ABC tra 97.3 6.5E-05 2.2E-09 85.2 1.8 51 9-59 367-421 (598)
151 4akg_A Glutathione S-transfera 97.3 0.00046 1.6E-08 89.4 9.5 65 19-89 643-710 (2695)
152 2jeo_A Uridine-cytidine kinase 97.2 0.00011 3.8E-09 73.4 3.0 38 9-46 11-50 (245)
153 3b60_A Lipid A export ATP-bind 97.2 8.3E-05 2.8E-09 84.0 1.8 49 10-58 356-408 (582)
154 1ny5_A Transcriptional regulat 97.2 0.00072 2.5E-08 72.4 9.0 67 22-89 161-244 (387)
155 4a82_A Cystic fibrosis transme 97.2 7.5E-05 2.6E-09 84.3 0.7 49 10-58 354-406 (578)
156 2qgz_A Helicase loader, putati 97.1 0.00014 4.8E-09 75.5 2.6 68 21-88 152-226 (308)
157 3cmu_A Protein RECA, recombina 97.1 0.00066 2.3E-08 85.4 8.9 76 18-93 1424-1522(2050)
158 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00011 3.7E-09 77.2 1.6 76 12-87 160-251 (330)
159 2v9p_A Replication protein E1; 97.1 0.00014 5E-09 75.2 2.5 40 10-50 113-154 (305)
160 3qf4_A ABC transporter, ATP-bi 97.1 0.00011 3.8E-09 83.1 1.5 51 9-59 355-409 (587)
161 4gp7_A Metallophosphoesterase; 97.1 0.00015 5.2E-09 68.3 2.0 28 15-42 1-30 (171)
162 2yl4_A ATP-binding cassette SU 97.1 9.1E-05 3.1E-09 83.9 0.4 48 11-58 358-409 (595)
163 3nwj_A ATSK2; P loop, shikimat 97.1 0.0001 3.4E-09 74.3 0.6 45 8-52 30-79 (250)
164 1qhx_A CPT, protein (chloramph 97.1 0.00031 1E-08 65.9 3.9 34 24-57 6-39 (178)
165 3uie_A Adenylyl-sulfate kinase 97.0 0.00023 8E-09 68.6 2.6 33 13-45 15-49 (200)
166 4eun_A Thermoresistant glucoki 97.0 0.0004 1.4E-08 66.9 3.7 32 24-57 32-63 (200)
167 1kag_A SKI, shikimate kinase I 96.9 0.00039 1.3E-08 64.9 3.4 28 23-50 6-33 (173)
168 3tr0_A Guanylate kinase, GMP k 96.9 0.00045 1.5E-08 66.3 3.7 36 19-56 3-40 (205)
169 3b9q_A Chloroplast SRP recepto 96.9 0.00044 1.5E-08 71.6 3.7 45 14-58 91-139 (302)
170 3trf_A Shikimate kinase, SK; a 96.9 0.00045 1.5E-08 65.3 3.3 31 22-52 6-36 (185)
171 1y63_A LMAJ004144AAA protein; 96.9 0.00042 1.4E-08 65.9 3.0 36 17-52 4-42 (184)
172 1znw_A Guanylate kinase, GMP k 96.8 0.00047 1.6E-08 66.9 3.1 29 18-46 15-45 (207)
173 3dzd_A Transcriptional regulat 96.8 0.0021 7.3E-08 68.3 8.4 67 22-89 153-235 (368)
174 3kb2_A SPBC2 prophage-derived 96.8 0.00062 2.1E-08 63.2 3.7 30 24-53 4-33 (173)
175 3vkg_A Dynein heavy chain, cyt 96.8 0.0013 4.5E-08 86.0 7.5 38 198-236 1420-1469(3245)
176 3kta_A Chromosome segregation 96.7 0.00076 2.6E-08 63.6 3.6 37 10-46 12-51 (182)
177 3lnc_A Guanylate kinase, GMP k 96.7 0.00044 1.5E-08 68.2 1.8 35 11-45 15-52 (231)
178 1via_A Shikimate kinase; struc 96.7 0.00067 2.3E-08 63.7 2.6 29 23-51 6-34 (175)
179 2og2_A Putative signal recogni 96.6 0.00089 3E-08 70.9 3.7 45 14-58 148-196 (359)
180 1knq_A Gluconate kinase; ALFA/ 96.6 0.00086 3E-08 62.8 3.0 31 24-56 11-41 (175)
181 2gza_A Type IV secretion syste 96.6 0.00054 1.9E-08 72.7 1.8 41 14-54 166-210 (361)
182 2dpy_A FLII, flagellum-specifi 96.6 0.00098 3.4E-08 72.5 3.8 46 9-55 144-193 (438)
183 1tf7_A KAIC; homohexamer, hexa 96.6 0.001 3.5E-08 74.1 4.0 51 7-57 22-79 (525)
184 2rhm_A Putative kinase; P-loop 96.6 0.00092 3.2E-08 63.3 3.1 28 24-51 8-35 (193)
185 3euj_A Chromosome partition pr 96.6 0.00081 2.8E-08 73.8 3.0 49 10-58 17-68 (483)
186 1ye8_A Protein THEP1, hypothet 96.6 0.00091 3.1E-08 63.6 2.9 23 24-46 3-25 (178)
187 3c8u_A Fructokinase; YP_612366 96.6 0.00059 2E-08 66.2 1.6 27 20-46 19-47 (208)
188 3iij_A Coilin-interacting nucl 96.6 0.0011 3.8E-08 62.4 3.5 31 22-52 12-42 (180)
189 3t61_A Gluconokinase; PSI-biol 96.6 0.0013 4.5E-08 63.2 3.9 30 22-51 19-48 (202)
190 2yhs_A FTSY, cell division pro 96.5 0.0014 4.7E-08 72.0 4.5 45 13-57 283-331 (503)
191 4f4c_A Multidrug resistance pr 96.5 0.0009 3.1E-08 82.5 3.3 49 11-59 1093-1145(1321)
192 2iyv_A Shikimate kinase, SK; t 96.5 0.0011 3.7E-08 62.6 3.2 30 23-52 4-33 (184)
193 2ze6_A Isopentenyl transferase 96.5 0.0013 4.4E-08 66.1 3.8 32 24-55 4-35 (253)
194 2bdt_A BH3686; alpha-beta prot 96.5 0.0012 4E-08 62.8 3.3 32 24-56 5-36 (189)
195 2j41_A Guanylate kinase; GMP, 96.5 0.0012 4.1E-08 63.3 3.4 26 20-45 3-30 (207)
196 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0017 5.7E-08 72.6 4.8 34 11-45 36-71 (538)
197 1zuh_A Shikimate kinase; alpha 96.5 0.0013 4.3E-08 61.2 3.2 30 23-52 9-38 (168)
198 3g5u_A MCG1178, multidrug resi 96.5 0.0007 2.4E-08 83.3 1.7 49 11-59 404-456 (1284)
199 3lw7_A Adenylate kinase relate 96.5 0.0011 3.9E-08 61.1 2.8 28 24-52 4-31 (179)
200 2obl_A ESCN; ATPase, hydrolase 96.5 0.0015 5E-08 69.0 3.8 38 9-47 58-97 (347)
201 2p5t_B PEZT; postsegregational 96.4 0.0013 4.6E-08 65.8 3.4 34 24-57 35-68 (253)
202 4a74_A DNA repair and recombin 96.4 0.0016 5.4E-08 63.4 3.7 25 19-43 21-47 (231)
203 1s96_A Guanylate kinase, GMP k 96.4 0.0015 5E-08 64.3 3.2 28 19-46 12-41 (219)
204 1cke_A CK, MSSA, protein (cyti 96.4 0.0014 4.9E-08 63.8 3.1 28 24-51 8-35 (227)
205 1jjv_A Dephospho-COA kinase; P 96.4 0.0018 6.1E-08 62.4 3.6 27 24-51 5-31 (206)
206 2iw3_A Elongation factor 3A; a 96.4 0.0011 3.8E-08 78.4 2.6 36 8-43 446-483 (986)
207 2pez_A Bifunctional 3'-phospho 96.4 0.0016 5.5E-08 61.2 3.2 32 24-55 8-42 (179)
208 2ehv_A Hypothetical protein PH 96.4 0.0019 6.4E-08 63.7 3.8 38 19-56 26-69 (251)
209 3cm0_A Adenylate kinase; ATP-b 96.4 0.0012 4E-08 62.4 2.2 27 24-50 7-33 (186)
210 3crm_A TRNA delta(2)-isopenten 96.4 0.0034 1.1E-07 65.4 5.8 35 23-57 7-41 (323)
211 2if2_A Dephospho-COA kinase; a 96.3 0.0015 5.1E-08 62.7 2.9 28 24-52 4-31 (204)
212 1e6c_A Shikimate kinase; phosp 96.3 0.0014 4.9E-08 60.9 2.6 29 23-51 4-32 (173)
213 1gvn_B Zeta; postsegregational 96.3 0.0018 6.3E-08 66.3 3.6 34 24-57 36-69 (287)
214 3dl0_A Adenylate kinase; phosp 96.3 0.0019 6.4E-08 62.7 3.5 29 24-52 3-31 (216)
215 4f4c_A Multidrug resistance pr 96.3 0.00095 3.2E-08 82.3 1.7 49 10-58 431-483 (1321)
216 2iw3_A Elongation factor 3A; a 96.3 0.0012 4.2E-08 78.1 2.4 44 10-53 686-733 (986)
217 2cdn_A Adenylate kinase; phosp 96.3 0.0018 6.1E-08 62.1 3.1 29 24-52 23-51 (201)
218 3fb4_A Adenylate kinase; psych 96.3 0.0019 6.4E-08 62.6 3.2 29 24-52 3-31 (216)
219 1cr0_A DNA primase/helicase; R 96.3 0.0015 5E-08 66.9 2.5 34 11-44 23-58 (296)
220 1lvg_A Guanylate kinase, GMP k 96.3 0.0018 6E-08 62.5 2.9 22 24-45 7-28 (198)
221 2pt5_A Shikimate kinase, SK; a 96.3 0.002 6.7E-08 59.7 3.1 29 24-52 3-31 (168)
222 3g5u_A MCG1178, multidrug resi 96.2 0.0012 4.1E-08 81.2 1.9 48 11-58 1047-1098(1284)
223 3a00_A Guanylate kinase, GMP k 96.2 0.0021 7.3E-08 61.0 3.3 23 24-46 4-26 (186)
224 2c95_A Adenylate kinase 1; tra 96.2 0.0017 5.8E-08 61.6 2.5 29 24-52 12-40 (196)
225 1tev_A UMP-CMP kinase; ploop, 96.2 0.0018 6.2E-08 61.2 2.7 28 24-51 6-33 (196)
226 1ly1_A Polynucleotide kinase; 96.2 0.002 6.8E-08 60.1 2.9 20 24-43 5-24 (181)
227 1kgd_A CASK, peripheral plasma 96.2 0.002 6.8E-08 61.0 2.9 23 24-46 8-30 (180)
228 1tue_A Replication protein E1; 96.2 0.002 6.8E-08 62.7 2.9 26 22-47 59-84 (212)
229 1kht_A Adenylate kinase; phosp 96.2 0.0014 5E-08 61.7 1.9 23 24-46 6-28 (192)
230 3tau_A Guanylate kinase, GMP k 96.2 0.0032 1.1E-07 61.0 4.2 24 24-47 11-34 (208)
231 2vli_A Antibiotic resistance p 96.1 0.002 6.9E-08 60.4 2.6 27 24-50 8-34 (183)
232 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0015 5.1E-08 71.5 1.9 42 13-54 128-175 (460)
233 2qt1_A Nicotinamide riboside k 96.1 0.0029 1E-07 60.9 3.7 29 17-45 15-45 (207)
234 3hr8_A Protein RECA; alpha and 96.1 0.0064 2.2E-07 64.2 6.6 38 19-56 57-99 (356)
235 3asz_A Uridine kinase; cytidin 96.1 0.0017 5.8E-08 62.7 2.0 23 24-46 9-31 (211)
236 2bbw_A Adenylate kinase 4, AK4 96.1 0.0026 8.8E-08 63.3 3.4 26 23-48 29-54 (246)
237 3bk7_A ABC transporter ATP-bin 96.1 0.0032 1.1E-07 71.4 4.4 33 12-45 107-141 (607)
238 2bwj_A Adenylate kinase 5; pho 96.1 0.0021 7.1E-08 61.1 2.5 29 23-51 14-42 (199)
239 2qm8_A GTPase/ATPase; G protei 96.1 0.0024 8.1E-08 67.0 3.1 49 10-58 42-94 (337)
240 1aky_A Adenylate kinase; ATP:A 96.1 0.0024 8.1E-08 62.3 2.7 29 24-52 7-35 (220)
241 1qf9_A UMP/CMP kinase, protein 96.1 0.0024 8.4E-08 60.1 2.7 30 23-52 8-37 (194)
242 1zd8_A GTP:AMP phosphotransfer 96.1 0.0024 8.2E-08 62.6 2.7 30 23-52 9-38 (227)
243 3j16_B RLI1P; ribosome recycli 96.0 0.0025 8.6E-08 72.1 3.2 35 11-45 361-402 (608)
244 3sop_A Neuronal-specific septi 96.0 0.0023 8E-08 64.9 2.7 33 24-56 5-39 (270)
245 3ozx_A RNAse L inhibitor; ATP 96.0 0.0026 8.9E-08 71.0 3.2 41 13-53 284-328 (538)
246 2oap_1 GSPE-2, type II secreti 96.0 0.002 6.9E-08 71.4 2.3 45 11-55 248-296 (511)
247 3sr0_A Adenylate kinase; phosp 96.0 0.0029 1E-07 61.6 3.1 33 24-58 3-35 (206)
248 2cvh_A DNA repair and recombin 96.0 0.0037 1.3E-07 60.3 3.8 37 19-55 16-54 (220)
249 1p9r_A General secretion pathw 96.0 0.0036 1.2E-07 67.6 4.1 42 12-54 158-202 (418)
250 1ukz_A Uridylate kinase; trans 96.0 0.0029 9.8E-08 60.6 3.0 29 24-52 18-46 (203)
251 3ney_A 55 kDa erythrocyte memb 96.0 0.0033 1.1E-07 60.8 3.4 30 17-46 13-44 (197)
252 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0034 1.2E-07 57.7 3.3 31 13-43 14-45 (149)
253 4aby_A DNA repair protein RECN 96.0 0.0015 5.1E-08 70.2 0.9 39 8-46 46-85 (415)
254 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0028 9.7E-08 61.5 2.7 33 12-44 11-46 (235)
255 1e4v_A Adenylate kinase; trans 96.0 0.0031 1.1E-07 61.2 3.0 29 24-52 3-31 (214)
256 4e22_A Cytidylate kinase; P-lo 96.0 0.0035 1.2E-07 62.8 3.4 27 24-50 30-56 (252)
257 3b85_A Phosphate starvation-in 96.0 0.0022 7.5E-08 62.6 1.9 31 10-44 13-45 (208)
258 2x8a_A Nuclear valosin-contain 95.9 0.0017 5.8E-08 66.1 1.1 151 282-453 77-236 (274)
259 2jaq_A Deoxyguanosine kinase; 95.9 0.0031 1.1E-07 60.0 2.8 27 24-50 3-29 (205)
260 1zak_A Adenylate kinase; ATP:A 95.9 0.0023 7.9E-08 62.4 1.9 28 22-49 6-33 (222)
261 1lw7_A Transcriptional regulat 95.9 0.0044 1.5E-07 65.6 4.1 34 14-47 159-196 (365)
262 1sq5_A Pantothenate kinase; P- 95.9 0.0023 8E-08 66.1 1.9 26 21-46 78-105 (308)
263 3be4_A Adenylate kinase; malar 95.9 0.0029 1E-07 61.6 2.5 29 24-52 8-36 (217)
264 2pbr_A DTMP kinase, thymidylat 95.9 0.0046 1.6E-07 58.3 3.7 30 24-53 3-35 (195)
265 3vkg_A Dynein heavy chain, cyt 95.9 0.015 5.1E-07 76.4 9.4 65 19-89 602-669 (3245)
266 1n0w_A DNA repair protein RAD5 95.9 0.005 1.7E-07 60.4 4.1 38 19-56 20-68 (243)
267 2qag_B Septin-6, protein NEDD5 95.9 0.0021 7.3E-08 69.4 1.5 32 13-44 30-65 (427)
268 3umf_A Adenylate kinase; rossm 95.9 0.0036 1.2E-07 61.5 2.9 33 24-58 32-64 (217)
269 2fna_A Conserved hypothetical 95.9 0.0055 1.9E-07 63.4 4.6 34 22-55 31-64 (357)
270 3lda_A DNA repair protein RAD5 95.8 0.014 4.7E-07 62.7 7.7 38 19-56 174-222 (400)
271 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0054 1.9E-07 61.6 4.2 32 24-55 7-41 (260)
272 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0037 1.3E-07 69.8 3.1 34 12-45 301-336 (538)
273 3tlx_A Adenylate kinase 2; str 95.8 0.0036 1.2E-07 62.4 2.7 28 24-51 32-59 (243)
274 1rj9_A FTSY, signal recognitio 95.8 0.005 1.7E-07 63.7 3.8 35 24-58 105-141 (304)
275 3f8t_A Predicted ATPase involv 95.8 0.0039 1.3E-07 67.9 3.0 26 23-49 241-267 (506)
276 2z0h_A DTMP kinase, thymidylat 95.8 0.0054 1.9E-07 58.1 3.7 29 24-52 3-34 (197)
277 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0011 3.7E-08 69.9 -1.4 38 12-49 11-52 (359)
278 1ak2_A Adenylate kinase isoenz 95.7 0.0038 1.3E-07 61.5 2.6 29 24-52 19-47 (233)
279 2zr9_A Protein RECA, recombina 95.7 0.014 4.9E-07 61.4 7.1 37 19-55 57-98 (349)
280 3aez_A Pantothenate kinase; tr 95.7 0.0049 1.7E-07 63.9 3.4 26 20-45 87-114 (312)
281 3ake_A Cytidylate kinase; CMP 95.7 0.0057 1.9E-07 58.5 3.6 29 24-52 5-33 (208)
282 1u0j_A DNA replication protein 95.7 0.0046 1.6E-07 62.6 3.0 25 21-45 104-128 (267)
283 3bk7_A ABC transporter ATP-bin 95.7 0.0043 1.5E-07 70.2 3.1 34 12-45 371-406 (607)
284 1qhl_A Protein (cell division 95.7 0.0019 6.5E-08 64.0 0.2 40 18-57 23-65 (227)
285 3jvv_A Twitching mobility prot 95.7 0.0037 1.3E-07 66.1 2.4 25 21-45 122-147 (356)
286 2v54_A DTMP kinase, thymidylat 95.7 0.0053 1.8E-07 58.6 3.3 29 24-52 7-36 (204)
287 2qor_A Guanylate kinase; phosp 95.6 0.0049 1.7E-07 59.3 2.9 23 24-46 15-37 (204)
288 3r20_A Cytidylate kinase; stru 95.6 0.0051 1.8E-07 61.1 3.1 28 24-51 12-39 (233)
289 2i3b_A HCR-ntpase, human cance 95.6 0.005 1.7E-07 59.1 2.9 22 24-45 4-25 (189)
290 1uf9_A TT1252 protein; P-loop, 95.6 0.0058 2E-07 58.2 3.4 27 24-51 11-37 (203)
291 1nks_A Adenylate kinase; therm 95.6 0.0035 1.2E-07 59.0 1.7 23 24-46 4-26 (194)
292 1pzn_A RAD51, DNA repair and r 95.6 0.0058 2E-07 64.4 3.5 30 16-45 124-155 (349)
293 2xb4_A Adenylate kinase; ATP-b 95.6 0.0053 1.8E-07 60.1 3.1 28 24-51 3-30 (223)
294 2o5v_A DNA replication and rep 95.6 0.0055 1.9E-07 64.8 3.4 36 9-44 13-49 (359)
295 1m7g_A Adenylylsulfate kinase; 95.5 0.0052 1.8E-07 59.5 2.7 37 18-54 20-62 (211)
296 1ex7_A Guanylate kinase; subst 95.5 0.0088 3E-07 57.3 4.2 26 22-47 2-27 (186)
297 2ewv_A Twitching motility prot 95.5 0.0048 1.7E-07 65.6 2.6 33 11-45 126-160 (372)
298 1vht_A Dephospho-COA kinase; s 95.5 0.0062 2.1E-07 59.1 3.1 27 24-51 7-33 (218)
299 2grj_A Dephospho-COA kinase; T 95.5 0.0056 1.9E-07 58.9 2.7 29 24-52 15-43 (192)
300 2qen_A Walker-type ATPase; unk 95.5 0.0092 3.2E-07 61.6 4.4 31 22-54 32-62 (350)
301 4eaq_A DTMP kinase, thymidylat 95.4 0.0065 2.2E-07 60.0 3.0 34 13-46 13-51 (229)
302 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0055 1.9E-07 65.0 2.6 33 11-43 12-45 (365)
303 3ozx_A RNAse L inhibitor; ATP 95.4 0.0083 2.8E-07 66.9 4.2 36 10-45 11-49 (538)
304 3e70_C DPA, signal recognition 95.4 0.0071 2.4E-07 63.2 3.4 37 21-57 127-167 (328)
305 1tq4_A IIGP1, interferon-induc 95.4 0.0026 8.8E-08 68.6 -0.0 45 11-55 37-105 (413)
306 2plr_A DTMP kinase, probable t 95.4 0.0061 2.1E-07 58.3 2.6 24 24-47 7-30 (213)
307 3j16_B RLI1P; ribosome recycli 95.3 0.011 3.8E-07 66.8 4.6 27 19-45 99-127 (608)
308 3qks_A DNA double-strand break 95.3 0.0088 3E-07 57.9 3.3 33 13-45 14-47 (203)
309 2yvu_A Probable adenylyl-sulfa 95.2 0.0088 3E-07 56.4 3.1 22 24-45 16-37 (186)
310 3ux8_A Excinuclease ABC, A sub 95.2 0.0056 1.9E-07 70.2 2.0 29 10-38 31-61 (670)
311 3ux8_A Excinuclease ABC, A sub 95.2 0.0045 1.5E-07 71.0 1.1 32 11-42 336-369 (670)
312 1rz3_A Hypothetical protein rb 95.2 0.012 4.1E-07 56.5 3.8 26 20-45 19-46 (201)
313 1pui_A ENGB, probable GTP-bind 95.2 0.0058 2E-07 58.4 1.6 32 11-44 16-49 (210)
314 2wwf_A Thymidilate kinase, put 95.2 0.0043 1.5E-07 59.6 0.7 23 24-46 13-35 (212)
315 2f1r_A Molybdopterin-guanine d 95.1 0.0065 2.2E-07 57.3 1.7 35 24-58 5-44 (171)
316 2vp4_A Deoxynucleoside kinase; 95.1 0.011 3.8E-07 58.1 3.5 37 18-56 15-53 (230)
317 3szr_A Interferon-induced GTP- 95.1 0.0067 2.3E-07 68.8 2.0 38 18-56 43-83 (608)
318 2qnr_A Septin-2, protein NEDD5 95.1 0.0071 2.4E-07 62.3 2.0 34 7-44 8-41 (301)
319 1u94_A RECA protein, recombina 95.0 0.035 1.2E-06 58.6 7.3 35 20-54 60-99 (356)
320 2qag_C Septin-7; cell cycle, c 95.0 0.011 3.6E-07 63.9 3.3 33 9-45 23-55 (418)
321 1q3t_A Cytidylate kinase; nucl 95.0 0.011 3.7E-07 58.3 3.1 28 24-51 19-46 (236)
322 3thx_B DNA mismatch repair pro 95.0 0.01 3.5E-07 70.1 3.2 34 10-43 660-695 (918)
323 1nlf_A Regulatory protein REPA 95.0 0.0096 3.3E-07 60.3 2.6 26 19-44 26-53 (279)
324 1uj2_A Uridine-cytidine kinase 94.9 0.012 4.1E-07 58.6 3.2 25 24-48 25-49 (252)
325 3cr8_A Sulfate adenylyltranfer 94.9 0.011 3.8E-07 66.0 3.3 39 19-57 365-409 (552)
326 1wb9_A DNA mismatch repair pro 94.9 0.011 3.9E-07 68.9 3.3 33 10-43 595-629 (800)
327 1xp8_A RECA protein, recombina 94.9 0.04 1.4E-06 58.3 7.3 36 20-55 71-111 (366)
328 2dr3_A UPF0273 protein PH0284; 94.8 0.018 6.3E-07 56.3 4.3 39 17-55 17-60 (247)
329 1nn5_A Similar to deoxythymidy 94.8 0.006 2.1E-07 58.6 0.7 23 24-46 12-34 (215)
330 2h92_A Cytidylate kinase; ross 94.8 0.014 4.8E-07 56.4 3.3 30 23-52 5-34 (219)
331 3a8t_A Adenylate isopentenyltr 94.8 0.014 4.8E-07 61.0 3.3 34 24-57 43-76 (339)
332 3io5_A Recombination and repai 94.7 0.028 9.7E-07 58.2 5.4 37 19-55 25-67 (333)
333 3tqc_A Pantothenate kinase; bi 94.7 0.012 4.3E-07 61.1 2.6 23 24-46 95-117 (321)
334 1lv7_A FTSH; alpha/beta domain 94.6 0.0031 1.1E-07 62.9 -2.0 106 282-401 78-183 (257)
335 2f6r_A COA synthase, bifunctio 94.5 0.013 4.5E-07 59.6 2.4 27 24-51 78-104 (281)
336 3d3q_A TRNA delta(2)-isopenten 94.5 0.017 5.6E-07 60.6 3.1 31 24-54 10-40 (340)
337 3qkt_A DNA double-strand break 94.5 0.015 5.1E-07 60.9 2.7 31 13-43 14-45 (339)
338 1ltq_A Polynucleotide kinase; 94.5 0.012 4.2E-07 59.9 2.0 21 24-44 5-25 (301)
339 1u0l_A Probable GTPase ENGC; p 94.5 0.016 5.3E-07 59.7 2.7 29 24-52 172-202 (301)
340 1oix_A RAS-related protein RAB 94.4 0.017 5.7E-07 54.7 2.7 21 24-44 32-52 (191)
341 1vma_A Cell division protein F 94.4 0.019 6.6E-07 59.3 3.3 30 16-45 97-128 (306)
342 1nij_A Hypothetical protein YJ 94.4 0.011 3.7E-07 61.4 1.4 22 24-45 7-28 (318)
343 2f9l_A RAB11B, member RAS onco 94.4 0.019 6.4E-07 54.6 2.9 21 24-44 8-28 (199)
344 3foz_A TRNA delta(2)-isopenten 94.4 0.017 5.8E-07 59.7 2.8 36 23-58 12-47 (316)
345 3zvl_A Bifunctional polynucleo 94.4 0.015 5.1E-07 62.7 2.5 25 24-48 261-285 (416)
346 1gtv_A TMK, thymidylate kinase 94.3 0.01 3.5E-07 57.0 0.9 23 24-46 3-25 (214)
347 1e69_A Chromosome segregation 94.3 0.017 5.7E-07 60.0 2.6 32 14-45 16-48 (322)
348 3exa_A TRNA delta(2)-isopenten 94.3 0.021 7.1E-07 59.1 3.3 34 24-57 6-39 (322)
349 1ewq_A DNA mismatch repair pro 94.2 0.019 6.4E-07 66.7 3.1 32 11-43 567-598 (765)
350 3thx_A DNA mismatch repair pro 94.2 0.02 6.8E-07 67.8 3.1 33 11-43 650-684 (934)
351 2qmh_A HPR kinase/phosphorylas 94.1 0.022 7.6E-07 55.0 2.8 26 21-46 34-59 (205)
352 1f6b_A SAR1; gtpases, N-termin 94.0 0.016 5.4E-07 55.2 1.6 33 11-43 14-47 (198)
353 1zu4_A FTSY; GTPase, signal re 94.0 0.031 1.1E-06 58.0 3.8 32 14-45 96-129 (320)
354 3cmu_A Protein RECA, recombina 93.8 0.083 2.8E-06 66.8 7.9 73 18-90 729-824 (2050)
355 1m2o_B GTP-binding protein SAR 93.8 0.028 9.4E-07 53.1 2.9 33 11-43 12-45 (190)
356 3fdi_A Uncharacterized protein 93.8 0.034 1.2E-06 53.6 3.5 28 24-51 9-36 (201)
357 3cf0_A Transitional endoplasmi 93.8 0.018 6.1E-07 59.1 1.6 147 289-455 89-241 (301)
358 1t9h_A YLOQ, probable GTPase E 93.7 0.017 5.7E-07 59.8 1.1 27 19-45 169-197 (307)
359 1c9k_A COBU, adenosylcobinamid 93.6 0.044 1.5E-06 52.1 3.8 31 24-55 2-32 (180)
360 2rcn_A Probable GTPase ENGC; Y 93.6 0.032 1.1E-06 58.9 3.0 23 24-46 218-240 (358)
361 1tf7_A KAIC; homohexamer, hexa 93.6 0.03 1E-06 62.2 3.0 28 17-44 275-304 (525)
362 2wji_A Ferrous iron transport 93.5 0.034 1.1E-06 51.1 2.8 21 24-44 6-26 (165)
363 3gmt_A Adenylate kinase; ssgci 93.5 0.032 1.1E-06 55.2 2.7 29 24-52 11-39 (230)
364 1x6v_B Bifunctional 3'-phospho 93.5 0.035 1.2E-06 62.7 3.4 34 24-57 55-91 (630)
365 1odf_A YGR205W, hypothetical 3 93.4 0.034 1.2E-06 56.9 2.9 23 24-46 34-56 (290)
366 1v5w_A DMC1, meiotic recombina 93.4 0.056 1.9E-06 56.6 4.7 26 19-44 118-145 (343)
367 2zej_A Dardarin, leucine-rich 93.4 0.033 1.1E-06 52.1 2.6 21 24-44 5-25 (184)
368 3ice_A Transcription terminati 93.3 0.039 1.3E-06 58.7 3.2 30 15-44 166-197 (422)
369 3e1s_A Exodeoxyribonuclease V, 93.3 0.059 2E-06 60.5 4.9 31 24-54 207-240 (574)
370 3auy_A DNA double-strand break 93.2 0.033 1.1E-06 58.9 2.5 33 11-43 14-47 (371)
371 2o8b_B DNA mismatch repair pro 93.2 0.038 1.3E-06 66.1 3.2 33 10-43 769-810 (1022)
372 2z43_A DNA repair and recombin 93.1 0.051 1.7E-06 56.3 3.7 26 19-44 103-130 (324)
373 1np6_A Molybdopterin-guanine d 93.0 0.048 1.6E-06 51.4 3.1 22 23-44 8-29 (174)
374 1udx_A The GTP-binding protein 92.9 0.034 1.2E-06 59.9 2.1 33 12-44 146-180 (416)
375 2yv5_A YJEQ protein; hydrolase 92.9 0.044 1.5E-06 56.3 2.9 28 24-52 168-197 (302)
376 2wjg_A FEOB, ferrous iron tran 92.9 0.049 1.7E-06 50.7 2.9 20 24-43 10-29 (188)
377 3tqf_A HPR(Ser) kinase; transf 92.8 0.043 1.5E-06 51.8 2.4 23 21-43 16-38 (181)
378 3cmw_A Protein RECA, recombina 92.7 0.14 4.9E-06 63.8 7.5 69 22-90 733-824 (1706)
379 1svi_A GTP-binding protein YSX 92.7 0.064 2.2E-06 50.2 3.4 22 23-44 25-46 (195)
380 2gj8_A MNME, tRNA modification 92.7 0.052 1.8E-06 50.3 2.7 21 24-44 7-27 (172)
381 3eph_A TRNA isopentenyltransfe 92.6 0.045 1.5E-06 58.5 2.5 31 24-54 5-35 (409)
382 4ad8_A DNA repair protein RECN 92.6 0.032 1.1E-06 61.8 1.4 38 8-45 46-84 (517)
383 2ygr_A Uvrabc system protein A 92.6 0.029 9.8E-07 66.4 1.0 32 11-42 656-689 (993)
384 2p67_A LAO/AO transport system 92.6 0.047 1.6E-06 57.1 2.5 34 11-44 44-79 (341)
385 1a7j_A Phosphoribulokinase; tr 92.5 0.02 6.7E-07 58.7 -0.4 23 24-46 8-30 (290)
386 2vf7_A UVRA2, excinuclease ABC 92.5 0.019 6.5E-07 67.1 -0.6 33 11-43 511-546 (842)
387 1w1w_A Structural maintenance 92.5 0.062 2.1E-06 58.0 3.5 29 18-46 21-51 (430)
388 1z2a_A RAS-related protein RAB 92.3 0.067 2.3E-06 48.4 2.9 20 24-43 8-27 (168)
389 1xjc_A MOBB protein homolog; s 92.2 0.059 2E-06 50.6 2.5 22 24-45 7-28 (169)
390 2px0_A Flagellar biosynthesis 92.2 0.059 2E-06 55.3 2.7 22 24-45 108-129 (296)
391 2dyk_A GTP-binding protein; GT 92.2 0.071 2.4E-06 47.9 2.9 21 24-44 4-24 (161)
392 2r6f_A Excinuclease ABC subuni 92.1 0.027 9.3E-07 66.4 -0.1 32 11-42 638-671 (972)
393 2ged_A SR-beta, signal recogni 92.0 0.073 2.5E-06 49.8 2.9 22 23-44 50-71 (193)
394 2ce2_X GTPase HRAS; signaling 92.0 0.071 2.4E-06 47.8 2.7 21 24-44 6-26 (166)
395 1kao_A RAP2A; GTP-binding prot 92.0 0.076 2.6E-06 47.8 2.9 20 24-43 6-25 (167)
396 2nzj_A GTP-binding protein REM 91.9 0.075 2.5E-06 48.5 2.8 20 24-43 7-26 (175)
397 1xwi_A SKD1 protein; VPS4B, AA 91.9 0.071 2.4E-06 55.2 2.9 83 288-386 85-168 (322)
398 1u8z_A RAS-related protein RAL 91.8 0.082 2.8E-06 47.6 2.9 20 24-43 7-26 (168)
399 3pqc_A Probable GTP-binding pr 91.8 0.089 3E-06 48.9 3.2 22 23-44 25-46 (195)
400 3t34_A Dynamin-related protein 91.8 0.079 2.7E-06 55.6 3.2 32 11-43 25-56 (360)
401 2erx_A GTP-binding protein DI- 91.8 0.083 2.8E-06 47.9 2.9 20 24-43 6-25 (172)
402 1ek0_A Protein (GTP-binding pr 91.7 0.084 2.9E-06 47.7 2.9 20 24-43 6-25 (170)
403 2zts_A Putative uncharacterize 91.7 0.075 2.6E-06 51.9 2.7 35 20-54 27-67 (251)
404 1m8p_A Sulfate adenylyltransfe 91.7 0.065 2.2E-06 60.1 2.5 32 24-55 399-434 (573)
405 3q72_A GTP-binding protein RAD 91.7 0.068 2.3E-06 48.4 2.2 20 24-43 5-24 (166)
406 1z0j_A RAB-22, RAS-related pro 91.7 0.086 2.9E-06 47.7 2.9 21 24-44 9-29 (170)
407 2iut_A DNA translocase FTSK; n 91.7 0.39 1.3E-05 53.5 8.7 38 198-236 376-419 (574)
408 1ls1_A Signal recognition part 91.6 0.1 3.5E-06 53.4 3.7 30 14-45 91-122 (295)
409 3q85_A GTP-binding protein REM 91.6 0.085 2.9E-06 47.9 2.8 20 24-43 5-24 (169)
410 3hdt_A Putative kinase; struct 91.6 0.078 2.7E-06 52.1 2.6 28 24-51 17-44 (223)
411 1wms_A RAB-9, RAB9, RAS-relate 91.6 0.089 3E-06 48.2 2.9 20 24-43 10-29 (177)
412 1g16_A RAS-related protein SEC 91.5 0.086 3E-06 47.7 2.7 20 24-43 6-25 (170)
413 2r8r_A Sensor protein; KDPD, P 91.5 0.16 5.6E-06 49.9 4.9 28 24-51 9-39 (228)
414 1z08_A RAS-related protein RAB 91.5 0.09 3.1E-06 47.7 2.9 20 24-43 9-28 (170)
415 2www_A Methylmalonic aciduria 91.5 0.083 2.8E-06 55.4 2.9 21 24-44 77-97 (349)
416 1ky3_A GTP-binding protein YPT 91.4 0.093 3.2E-06 48.1 2.9 20 24-43 11-30 (182)
417 1nrj_B SR-beta, signal recogni 91.4 0.093 3.2E-06 50.2 2.9 22 23-44 14-35 (218)
418 1c1y_A RAS-related protein RAP 91.3 0.099 3.4E-06 47.2 2.9 20 24-43 6-25 (167)
419 2axn_A 6-phosphofructo-2-kinas 91.3 0.1 3.6E-06 57.8 3.6 23 24-46 38-60 (520)
420 3lxx_A GTPase IMAP family memb 91.3 0.094 3.2E-06 51.4 2.9 21 24-44 32-52 (239)
421 1r2q_A RAS-related protein RAB 91.2 0.1 3.5E-06 47.1 2.9 20 24-43 9-28 (170)
422 2lkc_A Translation initiation 91.2 0.1 3.6E-06 47.7 3.0 20 24-43 11-30 (178)
423 3tw8_B RAS-related protein RAB 91.2 0.087 3E-06 48.3 2.4 20 24-43 12-31 (181)
424 1g8f_A Sulfate adenylyltransfe 91.1 0.11 3.6E-06 57.5 3.4 24 24-47 398-421 (511)
425 3k53_A Ferrous iron transport 91.1 0.092 3.2E-06 52.7 2.7 21 24-44 6-26 (271)
426 2hxs_A RAB-26, RAS-related pro 91.1 0.11 3.7E-06 47.6 3.0 20 24-43 9-28 (178)
427 1ega_A Protein (GTP-binding pr 91.1 0.095 3.3E-06 53.7 2.8 21 24-44 11-31 (301)
428 3tmk_A Thymidylate kinase; pho 91.0 0.14 4.8E-06 50.0 3.8 25 24-48 8-32 (216)
429 3bc1_A RAS-related protein RAB 91.0 0.11 3.7E-06 48.2 2.9 21 23-43 13-33 (195)
430 1p5z_B DCK, deoxycytidine kina 91.0 0.068 2.3E-06 53.4 1.6 23 24-46 27-49 (263)
431 1r8s_A ADP-ribosylation factor 90.9 0.11 3.9E-06 46.8 2.9 20 24-43 3-22 (164)
432 4i1u_A Dephospho-COA kinase; s 90.9 0.12 4E-06 50.4 3.1 28 24-52 12-39 (210)
433 2ocp_A DGK, deoxyguanosine kin 90.9 0.15 5.2E-06 50.0 4.1 23 24-46 5-27 (241)
434 2fn4_A P23, RAS-related protei 90.9 0.11 3.6E-06 47.7 2.7 21 24-44 12-32 (181)
435 1upt_A ARL1, ADP-ribosylation 90.9 0.12 3.9E-06 47.0 2.9 20 24-43 10-29 (171)
436 4dsu_A GTPase KRAS, isoform 2B 90.9 0.11 3.9E-06 47.9 2.9 20 24-43 7-26 (189)
437 1ni3_A YCHF GTPase, YCHF GTP-b 90.9 0.12 4E-06 55.3 3.3 25 19-43 16-42 (392)
438 2y8e_A RAB-protein 6, GH09086P 90.8 0.11 3.8E-06 47.5 2.7 20 24-43 17-36 (179)
439 2i1q_A DNA repair and recombin 90.8 0.096 3.3E-06 54.0 2.6 26 19-44 94-121 (322)
440 3clv_A RAB5 protein, putative; 90.8 0.11 3.9E-06 48.3 2.9 21 24-44 10-30 (208)
441 3v9p_A DTMP kinase, thymidylat 90.8 0.082 2.8E-06 52.1 1.9 25 21-45 23-49 (227)
442 2vf7_A UVRA2, excinuclease ABC 90.8 0.075 2.6E-06 62.2 1.9 29 10-38 23-53 (842)
443 1z0f_A RAB14, member RAS oncog 90.7 0.12 4.1E-06 47.2 2.9 20 24-43 18-37 (179)
444 2cxx_A Probable GTP-binding pr 90.7 0.11 3.6E-06 48.2 2.6 20 24-43 4-23 (190)
445 2oil_A CATX-8, RAS-related pro 90.7 0.12 4.1E-06 48.3 2.9 20 24-43 28-47 (193)
446 3con_A GTPase NRAS; structural 90.7 0.12 4.1E-06 48.1 2.9 21 24-44 24-44 (190)
447 2a9k_A RAS-related protein RAL 90.7 0.12 4.2E-06 47.5 2.9 20 24-43 21-40 (187)
448 4edh_A DTMP kinase, thymidylat 90.6 0.11 3.7E-06 50.6 2.5 22 24-45 9-30 (213)
449 3t1o_A Gliding protein MGLA; G 90.6 0.12 4.3E-06 47.9 2.9 22 24-45 17-38 (198)
450 3pih_A Uvrabc system protein A 90.5 0.086 2.9E-06 62.2 2.1 28 11-38 598-627 (916)
451 2efe_B Small GTP-binding prote 90.5 0.13 4.4E-06 47.3 2.9 20 24-43 15-34 (181)
452 2r6a_A DNAB helicase, replicat 90.5 0.1 3.6E-06 56.7 2.6 41 14-54 194-240 (454)
453 1fzq_A ADP-ribosylation factor 90.5 0.1 3.5E-06 48.6 2.2 21 24-44 19-39 (181)
454 3bh0_A DNAB-like replicative h 90.5 0.13 4.6E-06 53.0 3.3 25 19-43 64-90 (315)
455 4ag6_A VIRB4 ATPase, type IV s 90.4 0.26 9E-06 52.1 5.6 34 21-54 35-71 (392)
456 2bme_A RAB4A, RAS-related prot 90.4 0.13 4.3E-06 47.6 2.7 20 24-43 13-32 (186)
457 2g6b_A RAS-related protein RAB 90.4 0.14 4.6E-06 47.0 2.9 20 24-43 13-32 (180)
458 1m7b_A RND3/RHOE small GTP-bin 90.3 0.13 4.4E-06 47.8 2.7 20 24-43 10-29 (184)
459 3pih_A Uvrabc system protein A 90.2 0.083 2.8E-06 62.3 1.6 29 10-38 11-41 (916)
460 2gf9_A RAS-related protein RAB 90.1 0.15 5E-06 47.6 2.9 20 24-43 25-44 (189)
461 3kkq_A RAS-related protein M-R 90.0 0.15 5.1E-06 47.0 2.9 20 24-43 21-40 (183)
462 2ygr_A Uvrabc system protein A 90.0 0.091 3.1E-06 62.2 1.7 29 10-38 33-63 (993)
463 3ihw_A Centg3; RAS, centaurin, 90.0 0.15 5E-06 47.7 2.9 20 24-43 23-42 (184)
464 3tkl_A RAS-related protein RAB 90.0 0.15 5.1E-06 47.5 2.9 20 24-43 19-38 (196)
465 1mh1_A RAC1; GTP-binding, GTPa 90.0 0.15 5.2E-06 46.9 2.9 20 24-43 8-27 (186)
466 4dhe_A Probable GTP-binding pr 89.9 0.14 4.6E-06 49.1 2.6 22 23-44 31-52 (223)
467 2r6f_A Excinuclease ABC subuni 89.9 0.093 3.2E-06 61.9 1.6 29 10-38 31-61 (972)
468 2bov_A RAla, RAS-related prote 89.9 0.15 5.2E-06 47.9 2.9 20 24-43 17-36 (206)
469 1ixz_A ATP-dependent metallopr 89.8 0.044 1.5E-06 54.3 -1.0 148 284-451 84-237 (254)
470 1ksh_A ARF-like protein 2; sma 89.8 0.15 5.1E-06 47.2 2.7 20 24-43 21-40 (186)
471 1zbd_A Rabphilin-3A; G protein 89.7 0.16 5.5E-06 47.8 2.9 21 23-43 10-30 (203)
472 1vg8_A RAS-related protein RAB 89.7 0.16 5.5E-06 47.9 2.9 21 24-44 11-31 (207)
473 3t15_A Ribulose bisphosphate c 89.7 0.052 1.8E-06 55.4 -0.6 90 294-388 81-176 (293)
474 3lv8_A DTMP kinase, thymidylat 89.7 0.13 4.5E-06 50.9 2.3 22 24-45 30-51 (236)
475 2fg5_A RAB-22B, RAS-related pr 89.7 0.15 5.3E-06 47.7 2.7 20 24-43 26-45 (192)
476 3dz8_A RAS-related protein RAB 89.7 0.16 5.3E-06 47.6 2.7 21 24-44 26-46 (191)
477 2ffh_A Protein (FFH); SRP54, s 89.6 0.22 7.6E-06 53.7 4.2 31 14-45 91-122 (425)
478 3bwd_D RAC-like GTP-binding pr 89.6 0.17 5.8E-06 46.4 2.9 21 23-43 10-30 (182)
479 1z06_A RAS-related protein RAB 89.6 0.17 5.7E-06 47.2 2.9 20 24-43 23-42 (189)
480 1moz_A ARL1, ADP-ribosylation 89.6 0.1 3.4E-06 48.2 1.3 21 23-43 20-40 (183)
481 3b1v_A Ferrous iron uptake tra 89.6 0.15 5.3E-06 51.4 2.8 21 24-44 6-26 (272)
482 2iwr_A Centaurin gamma 1; ANK 89.6 0.14 4.9E-06 46.9 2.4 20 24-43 10-29 (178)
483 2wsm_A Hydrogenase expression/ 89.5 0.16 5.4E-06 48.7 2.7 22 24-45 33-54 (221)
484 1x3s_A RAS-related protein RAB 89.5 0.18 6E-06 46.9 2.9 20 24-43 18-37 (195)
485 1j8m_F SRP54, signal recogniti 89.5 0.13 4.5E-06 52.7 2.2 30 16-45 92-122 (297)
486 2a5j_A RAS-related protein RAB 89.4 0.18 6E-06 47.2 2.9 20 24-43 24-43 (191)
487 3t5g_A GTP-binding protein RHE 89.4 0.17 5.7E-06 46.6 2.7 20 24-43 9-28 (181)
488 1zd9_A ADP-ribosylation factor 89.4 0.18 6E-06 47.1 2.9 20 24-43 25-44 (188)
489 2atv_A RERG, RAS-like estrogen 89.4 0.17 6E-06 47.4 2.9 21 23-43 30-50 (196)
490 2gf0_A GTP-binding protein DI- 89.4 0.17 5.7E-06 47.3 2.7 20 24-43 11-30 (199)
491 3oes_A GTPase rhebl1; small GT 89.4 0.17 5.7E-06 47.8 2.7 20 24-43 27-46 (201)
492 3c5c_A RAS-like protein 12; GD 89.3 0.18 6.2E-06 47.1 2.9 20 24-43 24-43 (187)
493 3reg_A RHO-like small GTPase; 89.3 0.18 6.2E-06 47.1 2.9 20 24-43 26-45 (194)
494 2bcg_Y Protein YP2, GTP-bindin 89.3 0.17 5.9E-06 47.8 2.7 20 24-43 11-30 (206)
495 2p5s_A RAS and EF-hand domain 89.2 0.19 6.3E-06 47.4 2.9 22 23-44 30-51 (199)
496 2b6h_A ADP-ribosylation factor 89.2 0.19 6.6E-06 47.2 3.0 20 24-43 32-51 (192)
497 3cph_A RAS-related protein SEC 89.1 0.19 6.4E-06 47.6 2.9 20 24-43 23-42 (213)
498 2c9o_A RUVB-like 1; hexameric 89.1 0.6 2.1E-05 50.6 7.3 88 211-327 347-438 (456)
499 3cbq_A GTP-binding protein REM 89.1 0.14 4.7E-06 48.5 1.9 20 24-43 26-45 (195)
500 2fz4_A DNA repair protein RAD2 89.1 0.32 1.1E-05 47.8 4.7 33 23-55 110-142 (237)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.8e-48 Score=429.89 Aligned_cols=415 Identities=26% Similarity=0.339 Sum_probs=291.1
Q ss_pred ccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
++.+++++..|.++++.+|+|++|+||||||||+++++|++..+.+++.+++.++...+.+....+++.+|. .+||
T Consensus 31 ~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ 110 (476)
T 2ce7_A 31 VVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPC 110 (476)
T ss_dssp HHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCC
Confidence 455667788899999999999999999999999999999999999999999999887777777777777776 5799
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
+|||||+|.+...+... .++.+.+. .++
T Consensus 111 ILfIDEid~l~~~r~~~------------------~~g~~~~~----------------------------------~~~ 138 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAG------------------LGGGHDER----------------------------------EQT 138 (476)
T ss_dssp EEEEETGGGTCCC---------------------------CHH----------------------------------HHH
T ss_pred EEEEechhhhhhhcccc------------------cCcCcHHH----------------------------------HHH
Confidence 99999999999776511 01133333 456
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHH
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIA 232 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~ 232 (640)
++ +||..||++.. +.+|+| |+|||+++.||++++| .+.|++|+.+-+
T Consensus 139 l~----------------------~LL~~ld~~~~----~~~viV-IaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R 191 (476)
T 2ce7_A 139 LN----------------------QLLVEMDGFDS----KEGIIV-MAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191 (476)
T ss_dssp HH----------------------HHHHHHHHSCG----GGTEEE-EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred HH----------------------HHHHHHhccCC----CCCEEE-EEecCChhhhchhhcccCcceeEeecCCCCHHHH
Confidence 67 88889998876 778999 9999999999999997 789999994444
Q ss_pred HHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccc
Q psy10020 233 ETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVM 312 (640)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii 312 (640)
..++ +.... ...+..++|+..+|..|+||+|+||.++|+ ++++.+++.....|
T Consensus 192 ~~Il-~~~~~------------------~~~l~~~v~l~~la~~t~G~sgadL~~lv~-------~Aal~A~~~~~~~I- 244 (476)
T 2ce7_A 192 KKIL-EIHTR------------------NKPLAEDVNLEIIAKRTPGFVGADLENLVN-------EAALLAAREGRDKI- 244 (476)
T ss_dssp HHHH-HHHHT------------------TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH-------HHHHHHHHTTCSSB-
T ss_pred HHHH-HHHHH------------------hCCCcchhhHHHHHHhcCCCcHHHHHHHHH-------HHHHHHHHcCCCee-
Confidence 4444 22111 112345778999999999999999999999 88888888776666
Q ss_pred cccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCc
Q psy10020 313 LRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLA 392 (640)
Q Consensus 313 ~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~ 392 (640)
+.++| ..+++++..+..++...++ +.++.+++|||+||+++++.+++.+++.+++|.|+|..+
T Consensus 245 ~~~dl--~~al~~v~~~~~~~~~~~~---------------~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~a 307 (476)
T 2ce7_A 245 TMKDF--EEAIDRVIAGPARKSLLIS---------------PAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKA 307 (476)
T ss_dssp CHHHH--HHHHHHHC--------CCC---------------HHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC------
T ss_pred cHHHH--HHHHHHHhcCccccchhhh---------------cchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccc
Confidence 99999 9999999988877766666 668899999999999999999999999999999998679
Q ss_pred cceEEEcCC-ccccCCHHHHhhhhhhhccccccceEEeccccchhhhhHHHHHHHHHHHhchhhhcccCCCCcccceEEE
Q psy10020 393 LGFAQYTPS-EQKLYNKEEIFSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTI 471 (640)
Q Consensus 393 ~g~~~~l~~-~~~~~t~~~l~~~i~~~l~G~aAE~ii~g~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v~kvtI 471 (640)
+||++++|. +.++.|+.+++++|+++|+|||||+++||.+++||..+-..++.+|+.- +..+.| ++.+..+.+
T Consensus 308 lg~~~~~p~~~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~m----v~~~gm--~~~~g~~~~ 381 (476)
T 2ce7_A 308 LGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNM----VCQLGM--SEELGPLAW 381 (476)
T ss_dssp -----------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHH----HHTSCC--CTTTCSCCC
T ss_pred cceEEEcCcccccccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHH----HHHhCC--CCcCCceee
Confidence 999999997 5678999999999999999999999999999999976556666666332 223335 333333322
Q ss_pred eecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccccccChHhhhcc
Q psy10020 472 VPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEETLDP 551 (640)
Q Consensus 472 ~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~~~~t~~~~~~~ 551 (640)
. +.+.. .. +.|. ++. ...++....+.+++
T Consensus 382 ~-------------~~~~~------~~------------------------~~~~---~~~-----~~~~s~~~~~~~~~ 410 (476)
T 2ce7_A 382 G-------------KEEQE------VF------------------------LGKE---ITR-----LRNYSEEVASKIDE 410 (476)
T ss_dssp C-------------C---------------------------------------------------CCCSCHHHHHHHHH
T ss_pred c-------------CCCcc------cc------------------------cccc---ccc-----cccccHHHHHHHHH
Confidence 1 11110 00 0000 000 00011111222222
Q ss_pred hHHhhhcccCC--cchHHhhHHHHHHHHHHhHhHhcCCHHHHHHHhcC
Q psy10020 552 KKEMTVNREQP--PSHDKKKRKCLTEISVTTMVLSSLNRREKEDRIGE 597 (640)
Q Consensus 552 i~~~~~~r~~~--~~~~~~~r~~l~~l~~~ll~~ETL~~~ei~~i~~~ 597 (640)
-...+....++ ..+..+||..++.||+.|+++|||+++|+++|+++
T Consensus 411 ~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 411 EVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 22222222222 66778899999999999999999999999999986
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=8.9e-47 Score=418.62 Aligned_cols=412 Identities=28% Similarity=0.366 Sum_probs=314.9
Q ss_pred ccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
++.++.++..|.++++.+++|++|+||||||||+|+++|++..+.+++.+++.++...+.+.....++.+|+ ..|+
T Consensus 46 lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 46 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 455667788999999999999999999999999999999999999999999999887777777777888887 3579
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
++|+||+|.+...+.... ++.+.+. .++
T Consensus 126 il~IDEId~l~~~r~~~~------------------~~~~~e~----------------------------------~~~ 153 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGV------------------GGGNDER----------------------------------EQT 153 (499)
T ss_dssp EEEEECGGGTCCCSSSST------------------TTSSHHH----------------------------------HHH
T ss_pred EEEEehHHHHHHhhccCc------------------CCCcHHH----------------------------------HHH
Confidence 999999999987664100 0123333 456
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHH
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIA 232 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~ 232 (640)
++ ++|..|++... +..++| +++||+|+.||++++| .+.|++|+.+.+
T Consensus 154 l~----------------------~LL~~Ldg~~~----~~~viv-iAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R 206 (499)
T 2dhr_A 154 LN----------------------QLLVEMDGFEK----DTAIVV-MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 206 (499)
T ss_dssp HH----------------------HHHHHGGGCCS----SCCCEE-EECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHH
T ss_pred HH----------------------HHHHHhccccc----CccEEE-EEecCChhhcCcccccccccceEEecCCCCHHHH
Confidence 67 78889998876 778899 9999999999999997 789999996666
Q ss_pred HHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccc
Q psy10020 233 ETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVM 312 (640)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii 312 (640)
..+| +.... .+.++.++++..+|..|+||+|+||.++|+ ++++.+++.....|
T Consensus 207 ~~IL-~~~~~------------------~~~l~~dv~l~~lA~~t~G~~gadL~~lv~-------~Aa~~A~~~~~~~I- 259 (499)
T 2dhr_A 207 EQIL-RIHAR------------------GKPLAEDVDLALLAKRTPGFVGADLENLLN-------EAALLAAREGRRKI- 259 (499)
T ss_dssp HHHH-HHTTS------------------SSCCCCSSTTHHHHTTSCSCCHHHHHHHHH-------HHHHHHTTTCCSSC-
T ss_pred HHHH-HHHHh------------------cCCCChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHHHHHhCCCcc-
Confidence 6665 32211 233456888999999999999999999999 88888887776666
Q ss_pred cccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCc
Q psy10020 313 LRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLA 392 (640)
Q Consensus 313 ~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~ 392 (640)
+.+|| +++++++..+.++++..++ +.++.+++|||+||+++++.+++.+++.+++|+|++ .+
T Consensus 260 t~~dl--~~al~~v~~~~~~~~~~~~---------------~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~-~~ 321 (499)
T 2dhr_A 260 TMKDL--EEAADRVMMLPAKKSLVLS---------------PRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRG-RA 321 (499)
T ss_dssp CSHHH--HHHHHHHTTCSSSSCCCCC---------------TTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSS-CT
T ss_pred CHHHH--HHHHHHHhcccccccchhh---------------HHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCC-Cc
Confidence 99999 9999999999887776666 788899999999999999999999999999999996 48
Q ss_pred cceEEEcCC--ccccCCHHHHhhhhhhhccccccceEEeccccchhhhhHHHHHHHHHHHhchhhhcccCCCCcccceEE
Q psy10020 393 LGFAQYTPS--EQKLYNKEEIFSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVT 470 (640)
Q Consensus 393 ~g~~~~l~~--~~~~~t~~~l~~~i~~~l~G~aAE~ii~g~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v~kvt 470 (640)
+||++ |. +.++.|+.+++++|.++++||+||+++||.+++||..+-..++.+|+.- +..+.| ++.+..+.
T Consensus 322 ~g~~~--p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~m----v~~~gm--~~~~g~~~ 393 (499)
T 2dhr_A 322 LGFMM--PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRM----ITEWGM--HPEFGPVA 393 (499)
T ss_dssp TCSSH--HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHH----HTTSCC--CSSSCSCC
T ss_pred Ccccc--cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHH----HHHhCC--CCCCCcee
Confidence 89988 54 5677899999999999999999999999999999976666666666432 223345 33333332
Q ss_pred EeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccccccChHhhhc
Q psy10020 471 IVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEETLD 550 (640)
Q Consensus 471 I~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~~~~t~~~~~~ 550 (640)
+. +.++. -+| .+. ...++....+.++
T Consensus 394 ~~-------------~~~~~--------------------------------------~~~--~~~-~~~~s~~~~~~i~ 419 (499)
T 2dhr_A 394 YA-------------VREDT--------------------------------------YLG--GYD-VRQYSEETAKRID 419 (499)
T ss_dssp CC-------------CCCCC--------------------------------------SSC--CCC-CCCCCHHHHHHHH
T ss_pred ec-------------CCCcc--------------------------------------ccc--ccc-ccccCHHHHHHHH
Confidence 21 11100 011 000 0001111122222
Q ss_pred chHHhhhcccCC--cchHHhhHHHHHHHHHHhHhHhcCCHHHHHHHhcCCCC
Q psy10020 551 PKKEMTVNREQP--PSHDKKKRKCLTEISVTTMVLSSLNRREKEDRIGESQP 600 (640)
Q Consensus 551 ~i~~~~~~r~~~--~~~~~~~r~~l~~l~~~ll~~ETL~~~ei~~i~~~~~~ 600 (640)
.-...+....++ ..+..+||..++.||+.|+++|||+++|++.|+++..+
T Consensus 420 ~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~ 471 (499)
T 2dhr_A 420 EAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPL 471 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCC
Confidence 222222222222 66778899999999999999999999999999987543
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=325.88 Aligned_cols=216 Identities=23% Similarity=0.291 Sum_probs=186.7
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
.++.+|+.|+.+|+.+|+|+||+||||||||++++++|+.++.+++.++++++.+.|.|+.+..++.+|. .+||+|
T Consensus 166 ~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~II 245 (405)
T 4b4t_J 166 LPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSII 245 (405)
T ss_dssp HHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceE
Confidence 4488999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
||||+|+++++|..... +++.+. .++++
T Consensus 246 FiDEiDai~~~R~~~~~------------------~~~~~~----------------------------------~~~l~ 273 (405)
T 4b4t_J 246 FMDEIDSIGSTRVEGSG------------------GGDSEV----------------------------------QRTML 273 (405)
T ss_dssp EEESSSCCTTSCSCSSS------------------GGGGHH----------------------------------HHHHH
T ss_pred eeecchhhccCCCCCCC------------------CCcHHH----------------------------------HHHHH
Confidence 99999999988762221 122222 45677
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----HH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN----RE 230 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~----~~ 230 (640)
+||++||++.. +.+|+| |||||+|+.|||||+| +|+|++|| .+
T Consensus 274 ----------------------~lL~~lDg~~~----~~~V~v-IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~ 326 (405)
T 4b4t_J 274 ----------------------ELLNQLDGFET----SKNIKI-IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAE 326 (405)
T ss_dssp ----------------------HHHHHHHTTTC----CCCEEE-EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHH
T ss_pred ----------------------HHHHhhhccCC----CCCeEE-EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHH
Confidence 89999999988 899999 9999999999999997 99999999 44
Q ss_pred HHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcc
Q psy10020 231 IAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKE 310 (640)
Q Consensus 231 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ 310 (640)
||+.|+ ++ +++..++|++.||+.|+|||||||.++|+ ++++.+.|+....
T Consensus 327 Il~~~~-~~----------------------~~l~~dvdl~~lA~~t~G~SGADi~~l~~-------eA~~~Air~~~~~ 376 (405)
T 4b4t_J 327 ILRIHS-RK----------------------MNLTRGINLRKVAEKMNGCSGADVKGVCT-------EAGMYALRERRIH 376 (405)
T ss_dssp HHHHHH-TT----------------------SBCCSSCCHHHHHHHCCSCCHHHHHHHHH-------HHHHHHHHTTCSB
T ss_pred HHHHHh-cC----------------------CCCCccCCHHHHHHHCCCCCHHHHHHHHH-------HHHHHHHHcCCCC
Confidence 555555 22 23356889999999999999999999999 9999999998887
Q ss_pred cccccccchhhhhhccCCCCCC
Q psy10020 311 VMLRKKLEEEYSIELGSPIDTS 332 (640)
Q Consensus 311 ii~~~di~~~~ai~~~~~g~~~ 332 (640)
| +.+|| +.|++++.+...+
T Consensus 377 v-t~~Df--~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 377 V-TQEDF--ELAVGKVMNKNQE 395 (405)
T ss_dssp C-CHHHH--HHHHHHHHHHHTC
T ss_pred c-CHHHH--HHHHHHHhCcccc
Confidence 7 99999 9999987655443
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.9e-35 Score=340.76 Aligned_cols=327 Identities=19% Similarity=0.228 Sum_probs=224.9
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++.+|+.|..+++.+|+|+||+||||||||+|+|++|+.++.+++.+++.++.+.+.++.+..++.+|. .+|||||
T Consensus 223 pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIf 302 (806)
T 3cf2_A 223 PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIF 302 (806)
T ss_dssp HHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEE
T ss_pred HccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEE
Confidence 378899999999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
|||+|++++.++... +... .++++
T Consensus 303 IDEiDal~~~r~~~~---------------------~~~~----------------------------------~riv~- 326 (806)
T 3cf2_A 303 IDELDAIAPKREKTH---------------------GEVE----------------------------------RRIVS- 326 (806)
T ss_dssp EESGGGTCCTTTTCC---------------------CTTH----------------------------------HHHHH-
T ss_pred EehhcccccccCCCC---------------------ChHH----------------------------------HHHHH-
Confidence 999999998876211 1111 45677
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETI 235 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~ 235 (640)
+||.+||++.. +.+|+| |||||+++.|||+|+| .|+|++||.+.+..+
T Consensus 327 ---------------------~LL~~mdg~~~----~~~V~V-IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 327 ---------------------QLLTLMDGLKQ----RAHVIV-MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp ---------------------HHHTHHHHCCG----GGCEEE-EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHH
T ss_pred ---------------------HHHHHHhcccc----cCCEEE-EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHH
Confidence 89999999988 889999 9999999999999998 899999996666665
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhc------------------------
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHN------------------------ 291 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~------------------------ 291 (640)
| +.+.. +..+..++|+..||.+|+||+|+||..+|+.
T Consensus 381 L-~~~l~------------------~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~ 441 (806)
T 3cf2_A 381 L-QIHTK------------------NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEV 441 (806)
T ss_dssp H-HHTCS------------------SSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHH
T ss_pred H-HHHhc------------------CCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhh
Confidence 5 32221 2223467889999999999999998877651
Q ss_pred --------------------------------------------------------------------------------
Q psy10020 292 -------------------------------------------------------------------------------- 291 (640)
Q Consensus 292 -------------------------------------------------------------------------------- 291 (640)
T Consensus 442 ~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPG 521 (806)
T 3cf2_A 442 MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521 (806)
T ss_dssp HHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTT
T ss_pred hccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCC
Confidence
Q ss_pred --------------------------------chHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhh
Q psy10020 292 --------------------------------IPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLR 339 (640)
Q Consensus 292 --------------------------------~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~ 339 (640)
-+.+.++.+|..||+..++||+++++ +++-...+..........+
T Consensus 522 tGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEi---Dsl~~~R~~~~~~~~~~~~ 598 (806)
T 3cf2_A 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDEL---DSIAKARGGNIGDGGGAAD 598 (806)
T ss_dssp SSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCG---GGCC--------------C
T ss_pred CCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhh---hHHhhccCCCCCCCchHHH
Confidence 11223344455556666777788888 4443222211111222334
Q ss_pred HhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhc
Q psy10020 340 KWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSR 419 (640)
Q Consensus 340 ~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l 419 (640)
..++|||++|||+.....++| | .++|+++.+|++.+||+ +|+..+-+.+|+. ..|..++..+...+
T Consensus 599 rv~~~lL~~mdg~~~~~~V~v--------i--~aTN~p~~lD~AllRpg-Rfd~~i~v~lPd~---~~R~~il~~~l~~~ 664 (806)
T 3cf2_A 599 RVINQILTEMDGMSTKKNVFI--------I--GATNRPDIIDPAILRPG-RLDQLIYIPLPDE---KSRVAILKANLRKS 664 (806)
T ss_dssp HHHHHHHHHHHSSCSSSSEEE--------E--CC-CCSSSSCHHHHSTT-TSCCEEEC--------CHHHHTTTTTSSCC
T ss_pred HHHHHHHHHHhCCCCCCCEEE--------E--EeCCCchhCCHhHcCCC-cceEEEEECCcCH---HHHHHHHHHHhcCC
Confidence 567899999999988766544 4 45588999999999996 6666665555542 23455554433211
Q ss_pred cccccceEEec------cccchhhhhHHHHHHHHHHHhch
Q psy10020 420 SHRVLRKWVLS------SLLTVNKFASLVCRQVAFHESGH 453 (640)
Q Consensus 420 ~G~aAE~ii~g------~~ttGA~l~~n~~~~~A~~e~gh 453 (640)
..+.++.+. +..+||++ .++++.+|+.+.+.
T Consensus 665 --~~~~~~dl~~la~~t~g~SGadi-~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 665 --PVAKDVDLEFLAKMTNGFSGADL-TEICQRACKLAIRE 701 (806)
T ss_dssp ----CCC----------------CH-HHHHHHHHHHHHHH
T ss_pred --CCCCCCCHHHHHHhCCCCCHHHH-HHHHHHHHHHHHHH
Confidence 122333332 34688999 55555555544443
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-35 Score=318.67 Aligned_cols=217 Identities=22% Similarity=0.272 Sum_probs=187.5
Q ss_pred ccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
++.++.+|+.|..+|+.+|+|+|||||||||||++++++|+.++.+++.++++++.+.|.|+.++.++.+|. .+||
T Consensus 197 v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~ 276 (434)
T 4b4t_M 197 IVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPT 276 (434)
T ss_dssp THHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCe
Confidence 456688999999999999999999999999999999999999999999999999999999999999999997 7899
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
||||||+|+++..|..... +++.+. .++
T Consensus 277 IifiDEiDal~~~R~~~~~------------------~~~~~~----------------------------------~~~ 304 (434)
T 4b4t_M 277 IIFIDELDAIGTKRFDSEK------------------SGDREV----------------------------------QRT 304 (434)
T ss_dssp EEEEECTHHHHCCCSSGGG------------------GTTHHH----------------------------------HHH
T ss_pred EEeecchhhhhhccCCCCC------------------CCchHH----------------------------------HHH
Confidence 9999999999988862221 112222 455
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN---- 228 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~---- 228 (640)
++ .||++||++.+ +.+|+| |||||+|+.|||||+| +|+|++||
T Consensus 305 ~~----------------------~lL~~ldg~~~----~~~ViV-IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R 357 (434)
T 4b4t_M 305 ML----------------------ELLNQLDGFSS----DDRVKV-LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSR 357 (434)
T ss_dssp HH----------------------HHHHHHTTSCS----SCSSEE-EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHH
T ss_pred HH----------------------HHHHHhhccCC----CCCEEE-EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHH
Confidence 66 89999999988 889999 9999999999999998 89999999
Q ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccC
Q psy10020 229 REIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLE 308 (640)
Q Consensus 229 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~ 308 (640)
.+||+.|+ +++. +..++||+.||..|+||||+||.++|+ ++++.+.|+..
T Consensus 358 ~~Il~~~~-~~~~----------------------~~~dvdl~~lA~~t~G~sGADi~~l~~-------eA~~~a~r~~~ 407 (434)
T 4b4t_M 358 AQILQIHS-RKMT----------------------TDDDINWQELARSTDEFNGAQLKAVTV-------EAGMIALRNGQ 407 (434)
T ss_dssp HHHHHHHH-HHSC----------------------BCSCCCHHHHHHHCSSCCHHHHHHHHH-------HHHHHHHHHTC
T ss_pred HHHHHHHh-cCCC----------------------CCCcCCHHHHHHhCCCCCHHHHHHHHH-------HHHHHHHHcCC
Confidence 45555555 3332 245789999999999999999999999 99999999888
Q ss_pred cccccccccchhhhhhccCCCCC
Q psy10020 309 KEVMLRKKLEEEYSIELGSPIDT 331 (640)
Q Consensus 309 ~~ii~~~di~~~~ai~~~~~g~~ 331 (640)
..| +.+|| ..|+.++.+...
T Consensus 408 ~~i-~~~Df--~~Al~~v~~~~~ 427 (434)
T 4b4t_M 408 SSV-KHEDF--VEGISEVQARKS 427 (434)
T ss_dssp SSB-CHHHH--HHHHHSCSSSCC
T ss_pred CCc-CHHHH--HHHHHHHhCCCC
Confidence 877 99999 999998876543
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=317.87 Aligned_cols=215 Identities=25% Similarity=0.270 Sum_probs=185.2
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
.++.+++.|..+++.+|+|+||+||||||||+++++||+.++.+++.++++++.+.|.|+.+..++.+|. .+||||
T Consensus 200 ~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~II 279 (437)
T 4b4t_I 200 LPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIV 279 (437)
T ss_dssp HHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
||||+|+++..|...+. +++.+. .++++
T Consensus 280 fiDEiDai~~~R~~~~~------------------~~~~~~----------------------------------~~~l~ 307 (437)
T 4b4t_I 280 FIDEIDAIGTKRYDSNS------------------GGEREI----------------------------------QRTML 307 (437)
T ss_dssp EEEEESSSSCCCSCSSC------------------SSCCHH----------------------------------HHHHH
T ss_pred EEehhhhhcccCCCCCC------------------CccHHH----------------------------------HHHHH
Confidence 99999999988862221 112222 45666
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----HH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN----RE 230 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~----~~ 230 (640)
+||+++|++.. +.+|+| |||||+|+.|||||+| +|+|++|| .+
T Consensus 308 ----------------------~LL~~lDg~~~----~~~ViV-IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~ 360 (437)
T 4b4t_I 308 ----------------------ELLNQLDGFDD----RGDVKV-IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKK 360 (437)
T ss_dssp ----------------------HHHHHHHHCCC----SSSEEE-EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHH
T ss_pred ----------------------HHHHHhhCcCC----CCCEEE-EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHH
Confidence 89999999888 889999 9999999999999998 89999999 44
Q ss_pred HHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcc
Q psy10020 231 IAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKE 310 (640)
Q Consensus 231 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ 310 (640)
||+.|+ ++ +.+..++|++.||..|+|||||||.++|+ ++++.+.++....
T Consensus 361 Il~~~l-~~----------------------~~l~~dvdl~~LA~~T~GfSGADI~~l~~-------eA~~~Air~~~~~ 410 (437)
T 4b4t_I 361 ILGIHT-SK----------------------MNLSEDVNLETLVTTKDDLSGADIQAMCT-------EAGLLALRERRMQ 410 (437)
T ss_dssp HHHHHH-TT----------------------SCBCSCCCHHHHHHHCCSCCHHHHHHHHH-------HHHHHHHHTTCSC
T ss_pred HHHHHh-cC----------------------CCCCCcCCHHHHHHhCCCCCHHHHHHHHH-------HHHHHHHHcCCCc
Confidence 555555 22 23356889999999999999999999999 9999999998887
Q ss_pred cccccccchhhhhhccCCCCC
Q psy10020 311 VMLRKKLEEEYSIELGSPIDT 331 (640)
Q Consensus 311 ii~~~di~~~~ai~~~~~g~~ 331 (640)
| +.+|| +.|++++..+..
T Consensus 411 I-t~eDf--~~Al~rv~~~~~ 428 (437)
T 4b4t_I 411 V-TAEDF--KQAKERVMKNKV 428 (437)
T ss_dssp B-CHHHH--HHHHHHHHHHHC
T ss_pred c-CHHHH--HHHHHHHhCCCC
Confidence 7 99999 999988765433
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-35 Score=316.14 Aligned_cols=218 Identities=24% Similarity=0.242 Sum_probs=186.3
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
.++.+++.|..+|+.+|+|+||+||||||||+++++||+.++.+++.+++..+.+.|.|+.++.++.+|. .+||||
T Consensus 227 ~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~II 306 (467)
T 4b4t_H 227 LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACII 306 (467)
T ss_dssp HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceE
Confidence 4578899999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
||||+|+++..|..... +..... .++++
T Consensus 307 fiDEiDai~~~R~~~~~------------------~~~~~~----------------------------------~~~l~ 334 (467)
T 4b4t_H 307 FFDEIDAVGGARFDDGA------------------GGDNEV----------------------------------QRTML 334 (467)
T ss_dssp EEECCTTTSBCCSSSSC------------------GGGGHH----------------------------------HHHHH
T ss_pred eecccccccccccCcCC------------------CccHHH----------------------------------HHHHH
Confidence 99999999988863221 011112 44556
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----HH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN----RE 230 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~----~~ 230 (640)
.||++||++.. +.+|+| |||||+|+.|||||+| +|+|++|| .+
T Consensus 335 ----------------------~lL~~lDg~~~----~~~ViV-IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~ 387 (467)
T 4b4t_H 335 ----------------------ELITQLDGFDP----RGNIKV-MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRAN 387 (467)
T ss_dssp ----------------------HHHHHHHSSCC----TTTEEE-EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHH
T ss_pred ----------------------HHHHHhhccCC----CCcEEE-EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHH
Confidence 89999999888 889999 9999999999999997 99999999 44
Q ss_pred HHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcc
Q psy10020 231 IAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKE 310 (640)
Q Consensus 231 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ 310 (640)
||+.|+ +++ .+..++|++.||+.|+|||||||.++|+ ++++.++|+....
T Consensus 388 Ilk~~l-~~~----------------------~l~~dvdl~~LA~~T~GfSGADI~~l~~-------eAa~~Air~~~~~ 437 (467)
T 4b4t_H 388 IFRIHS-KSM----------------------SVERGIRWELISRLCPNSTGAELRSVCT-------EAGMFAIRARRKV 437 (467)
T ss_dssp HHHHHH-TTS----------------------CBCSSCCHHHHHHHCCSCCHHHHHHHHH-------HHHHHHHHHTCSS
T ss_pred HHHHHh-cCC----------------------CCCCCCCHHHHHHHCCCCCHHHHHHHHH-------HHHHHHHHcCCCc
Confidence 555555 322 3356789999999999999999999999 9999999988877
Q ss_pred cccccccchhhhhhccCCCCCCcc
Q psy10020 311 VMLRKKLEEEYSIELGSPIDTSRS 334 (640)
Q Consensus 311 ii~~~di~~~~ai~~~~~g~~~~~ 334 (640)
+ +.+|| +.|++++..+.++++
T Consensus 438 i-t~~Df--~~Al~kV~~g~~k~s 458 (467)
T 4b4t_H 438 A-TEKDF--LKAVDKVISGYKKFS 458 (467)
T ss_dssp B-CHHHH--HHHHHHHHHHHCC--
T ss_pred c-CHHHH--HHHHHHHhcCcccch
Confidence 6 99999 999999887766543
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=315.28 Aligned_cols=213 Identities=24% Similarity=0.256 Sum_probs=184.3
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
.++.+|+.|..+|+.+|+|+||+||||||||+++++||+.++.+++.++++++.+.|.|+.+..++.+|. .+||||
T Consensus 199 ~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~Ii 278 (437)
T 4b4t_L 199 LPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCII 278 (437)
T ss_dssp HHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEE
T ss_pred HHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCcee
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
||||+|+++.+|...+. +.+.+. .++++
T Consensus 279 fiDEiDai~~~R~~~~~------------------~~~~~~----------------------------------~~~l~ 306 (437)
T 4b4t_L 279 FMDEVDAIGGRRFSEGT------------------SADREI----------------------------------QRTLM 306 (437)
T ss_dssp EEECCCSSSCCCSSSCC------------------SSTTHH----------------------------------HHHHH
T ss_pred eeecccccccccccCCC------------------CcchHH----------------------------------HHHHH
Confidence 99999999988863221 012222 45666
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCccc----HH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVN----RE 230 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~----~~ 230 (640)
.||++||++.. ..+|+| |||||+|+.|||||+| +|+|++|| .+
T Consensus 307 ----------------------~lL~~lDg~~~----~~~viv-I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~ 359 (437)
T 4b4t_L 307 ----------------------ELLTQMDGFDN----LGQTKI-IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLE 359 (437)
T ss_dssp ----------------------HHHHHHHSSSC----TTSSEE-EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHH
T ss_pred ----------------------HHHHHhhcccC----CCCeEE-EEecCCchhhCHHHhCCCccceeeecCCcCHHHHHH
Confidence 89999999988 889999 9999999999999998 89999999 45
Q ss_pred HHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcc
Q psy10020 231 IAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKE 310 (640)
Q Consensus 231 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ 310 (640)
||+.|+ +++. +..++||+.||..|+||||+||.++|+ ++++.+.++....
T Consensus 360 Il~~~~-~~~~----------------------~~~d~dl~~lA~~t~G~sGADi~~l~~-------eA~~~air~~~~~ 409 (437)
T 4b4t_L 360 IFKIHT-AKVK----------------------KTGEFDFEAAVKMSDGFNGADIRNCAT-------EAGFFAIRDDRDH 409 (437)
T ss_dssp HHHHHH-HTSC----------------------BCSCCCHHHHHHTCCSCCHHHHHHHHH-------HHHHHHHHTTCSS
T ss_pred HHHHHh-cCCC----------------------CCcccCHHHHHHhCCCCCHHHHHHHHH-------HHHHHHHHcCCCC
Confidence 566555 3332 346789999999999999999999999 9999999998887
Q ss_pred cccccccchhhhhhccCCC
Q psy10020 311 VMLRKKLEEEYSIELGSPI 329 (640)
Q Consensus 311 ii~~~di~~~~ai~~~~~g 329 (640)
| +.+|| ..|++++.+.
T Consensus 410 i-~~~d~--~~Al~~v~~~ 425 (437)
T 4b4t_L 410 I-NPDDL--MKAVRKVAEV 425 (437)
T ss_dssp B-CHHHH--HHHHHHHHHT
T ss_pred C-CHHHH--HHHHHHHHhc
Confidence 7 99999 9999877543
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=307.23 Aligned_cols=217 Identities=24% Similarity=0.260 Sum_probs=182.4
Q ss_pred cccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccc
Q psy10020 4 VDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCR 79 (640)
Q Consensus 4 v~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~i 79 (640)
..++.+++.|..+|+.+|+|+||+||||||||+++++||+.++.+++.+++..+.+.|.|+.+..++.+|. .+||+
T Consensus 189 ~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~I 268 (428)
T 4b4t_K 189 ELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSI 268 (428)
T ss_dssp HHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCe
Confidence 34578899999999999999999999999999999999999999999999999999999999999999997 78999
Q ss_pred cccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHh
Q psy10020 80 VFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCL 159 (640)
Q Consensus 80 l~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (640)
+|+||+|+++..|..... +++.+. .+++
T Consensus 269 ifiDEiD~i~~~R~~~~~------------------~~~~~~----------------------------------~r~l 296 (428)
T 4b4t_K 269 IFIDEVDSIATKRFDAQT------------------GSDREV----------------------------------QRIL 296 (428)
T ss_dssp EEEECTHHHHCSCSSSCS------------------CCCCHH----------------------------------HHHH
T ss_pred eechhhhhhhccccCCCC------------------CCChHH----------------------------------HHHH
Confidence 999999999988862221 122222 4667
Q ss_pred hhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccC-cccHHHH
Q psy10020 160 RKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLID-SVNREIA 232 (640)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~-~P~~~i~ 232 (640)
+ +||++|||+.. ..+|+| |||||+|+.|||||+| +|+|+ +|+.+.+
T Consensus 297 ~----------------------~lL~~ldg~~~----~~~v~v-I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R 349 (428)
T 4b4t_K 297 I----------------------ELLTQMDGFDQ----STNVKV-IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRER 349 (428)
T ss_dssp H----------------------HHHHHHHHSCS----SCSEEE-EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHH
T ss_pred H----------------------HHHHHhhCCCC----CCCEEE-EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHH
Confidence 7 89999999988 889999 9999999999999998 78895 8994444
Q ss_pred HHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccc
Q psy10020 233 ETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVM 312 (640)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii 312 (640)
..+| +.+.. .+.+..++|++.||..|+|||||||.++|+ ++++.+.|+....|
T Consensus 350 ~~Il-~~~~~------------------~~~l~~~~dl~~lA~~t~G~sgadi~~l~~-------eA~~~a~r~~~~~i- 402 (428)
T 4b4t_K 350 RLIF-GTIAS------------------KMSLAPEADLDSLIIRNDSLSGAVIAAIMQ-------EAGLRAVRKNRYVI- 402 (428)
T ss_dssp HHHH-HHHHH------------------SSCBCTTCCHHHHHHHTTTCCHHHHHHHHH-------HHHHHHHHTTCSSB-
T ss_pred HHHH-HHHhc------------------CCCCCcccCHHHHHHHCCCCCHHHHHHHHH-------HHHHHHHHCCCCCC-
Confidence 4333 22211 122356789999999999999999999999 99999999988777
Q ss_pred cccccchhhhhhccCC
Q psy10020 313 LRKKLEEEYSIELGSP 328 (640)
Q Consensus 313 ~~~di~~~~ai~~~~~ 328 (640)
+.+|| +.|+.++..
T Consensus 403 ~~~d~--~~A~~~~~~ 416 (428)
T 4b4t_K 403 LQSDL--EEAYATQVK 416 (428)
T ss_dssp CHHHH--HHHHHHHSC
T ss_pred CHHHH--HHHHHHhhC
Confidence 99999 888876543
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=1.5e-30 Score=301.47 Aligned_cols=221 Identities=21% Similarity=0.265 Sum_probs=146.3
Q ss_pred cccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccc
Q psy10020 4 VDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCR 79 (640)
Q Consensus 4 v~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~i 79 (640)
..++++++.|..+++..++|+||+||||||||++++++|.+++.+++.+++.++.+.|.|+.++.++.+|. .+|||
T Consensus 494 ~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~I 573 (806)
T 3cf2_A 494 QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 (806)
T ss_dssp TTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEE
T ss_pred HhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCce
Confidence 34478899999999999999999999999999999999999999999999999999999999999999998 67999
Q ss_pred cccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHh
Q psy10020 80 VFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCL 159 (640)
Q Consensus 80 l~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (640)
|||||+|++++.|+.... +++... ++++
T Consensus 574 ifiDEiDsl~~~R~~~~~------------------~~~~~~----------------------------------~rv~ 601 (806)
T 3cf2_A 574 LFFDELDSIAKARGGNIG------------------DGGGAA----------------------------------DRVI 601 (806)
T ss_dssp EECSCGGGCC------------------------------------------------------------------CHHH
T ss_pred eechhhhHHhhccCCCCC------------------CCchHH----------------------------------HHHH
Confidence 999999999988862111 011222 5677
Q ss_pred hhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHH
Q psy10020 160 RKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAE 233 (640)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~ 233 (640)
+ +||.+||++.. +.+|+| |||||+|+.||||++| +++|++||.+-+.
T Consensus 602 ~----------------------~lL~~mdg~~~----~~~V~v-i~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~ 654 (806)
T 3cf2_A 602 N----------------------QILTEMDGMST----KKNVFI-IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654 (806)
T ss_dssp H----------------------HHHHHHHSSCS----SSSEEE-ECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHH
T ss_pred H----------------------HHHHHHhCCCC----CCCEEE-EEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHH
Confidence 8 99999999988 889999 9999999999999997 8999999955555
Q ss_pred HHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccC-----
Q psy10020 234 TILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLE----- 308 (640)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~----- 308 (640)
.+| +.... ...+..++|++.||+.|+||||+||.++|+ ++++.+.|+.-
T Consensus 655 ~il-~~~l~------------------~~~~~~~~dl~~la~~t~g~SGadi~~l~~-------~A~~~a~r~~~~~~~~ 708 (806)
T 3cf2_A 655 AIL-KANLR------------------KSPVAKDVDLEFLAKMTNGFSGADLTEICQ-------RACKLAIRESIESEIR 708 (806)
T ss_dssp HTT-TTTSS------------------CC--CCC----------------CHHHHHH-------HHHHHHHHHHHC----
T ss_pred HHH-HHHhc------------------CCCCCCCCCHHHHHHhCCCCCHHHHHHHHH-------HHHHHHHHHHHHhhhh
Confidence 555 22211 223356889999999999999999999999 77777666521
Q ss_pred --------------------cccccccccchhhhhhccCCCCCC
Q psy10020 309 --------------------KEVMLRKKLEEEYSIELGSPIDTS 332 (640)
Q Consensus 309 --------------------~~ii~~~di~~~~ai~~~~~g~~~ 332 (640)
+. |+++|| +.|+.++.++...
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~-i~~~df--~~al~~~~pSvs~ 749 (806)
T 3cf2_A 709 RERERQTNPSAMEVEEDDPVPE-IRRDHF--EEAMRFARRSVSD 749 (806)
T ss_dssp -------------------CCC-----CC--TTTC---------
T ss_pred hhhhhccCccccccccccccCc-cCHHHH--HHHHHhCCCCCCH
Confidence 23 488999 8888888776554
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.6e-26 Score=238.42 Aligned_cols=224 Identities=24% Similarity=0.321 Sum_probs=170.1
Q ss_pred ccccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccc
Q psy10020 3 FVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHC 78 (640)
Q Consensus 3 iv~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~ 78 (640)
++.+++++.+|+++++.+++|++|+||||||||||+++||+.++.+++.+++.++...+.+.....++.+|+ ..|+
T Consensus 26 i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 26 ILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 345677889999999999999999999999999999999999999999999998877777777777888887 4689
Q ss_pred ccccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHH
Q psy10020 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQC 158 (640)
Q Consensus 79 il~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (640)
++|+||+|.+...++.... ... .+.
T Consensus 106 i~~~Deid~~~~~r~~~~~---------------------~~~----------------------------------~~~ 130 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRET---------------------GAS----------------------------------VRV 130 (274)
T ss_dssp EEEEETCTTTCC------------------------------C----------------------------------TTH
T ss_pred eEeeehhhhhhcccCCCcc---------------------hHH----------------------------------HHH
Confidence 9999999998765431000 000 233
Q ss_pred hhhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHH
Q psy10020 159 LRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIA 232 (640)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~ 232 (640)
++ +++.+|++... ...+++ +++||+|+.||++++| .++|++|+.+.+
T Consensus 131 ~~----------------------~~l~~Lsgg~~----~~~~i~-ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 131 VN----------------------QLLTEMDGLEA----RQQVFI-MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp HH----------------------HHHHHHHTCCS----TTCEEE-EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred HH----------------------HHHHhhhcccc----cCCEEE-EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 45 78889998877 778899 9999999999999996 789999996666
Q ss_pred HHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhC--CCCCccchhhhhhcchHHHHHHHHHHHhcc---
Q psy10020 233 ETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFL--PQTSTASNVNQSHNIPQEIYDDILNLKLNL--- 307 (640)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t--~G~sgadi~~l~~~~~a~~~~a~~~~ar~~--- 307 (640)
..+| +.+.. .+.......++|++.+|..| +||||+||..+|+ ++++.+.++.
T Consensus 184 ~~il-~~~~~---------------~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~-------~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 184 LAIL-KTITK---------------NGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR-------EASICALRQEMAR 240 (274)
T ss_dssp HHHH-HHHTT---------------TTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH-------HHHHHHHHHHC--
T ss_pred HHHH-HHHHh---------------cccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 6666 33322 01122335688999999975 4999999999999 7777766542
Q ss_pred -------CcccccccccchhhhhhccCCCCCCc
Q psy10020 308 -------EKEVMLRKKLEEEYSIELGSPIDTSR 333 (640)
Q Consensus 308 -------~~~ii~~~di~~~~ai~~~~~g~~~~ 333 (640)
....|+.+|| +.|+.++.+...+.
T Consensus 241 ~~~~~~~~~~~i~~~df--~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHF--EEAFKKVRSSISKK 271 (274)
T ss_dssp ---------CCBCHHHH--HHHHTTCCCCC---
T ss_pred ccccccccCCeecHHHH--HHHHHHhcCCCChh
Confidence 1223499999 99999888765543
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.91 E-value=3.4e-24 Score=218.18 Aligned_cols=219 Identities=32% Similarity=0.405 Sum_probs=166.1
Q ss_pred cccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccc
Q psy10020 4 VDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCR 79 (640)
Q Consensus 4 v~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~i 79 (640)
+.++.++..++.++..+++|++|+|||||||||++++|++.++.+++.+++.++...+.+.....++.+|+ ..|++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 107 (257)
T 1lv7_A 28 VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCI 107 (257)
T ss_dssp HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEE
T ss_pred HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCee
Confidence 34455677888889999999999999999999999999999999999999998877777766667777776 45789
Q ss_pred cccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHh
Q psy10020 80 VFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCL 159 (640)
Q Consensus 80 l~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (640)
+|+||+|.+...+...- +++..+. .+.+
T Consensus 108 l~iDeid~l~~~~~~~~------------------~~~~~~~----------------------------------~~~~ 135 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGL------------------GGGHDER----------------------------------EQTL 135 (257)
T ss_dssp EEETTHHHHTCCCSTTS------------------CCTTCHH----------------------------------HHHH
T ss_pred ehhhhhhhhccCCCCCc------------------CCCchHH----------------------------------HHHH
Confidence 99999999987654110 0111222 3455
Q ss_pred hhhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHH
Q psy10020 160 RKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAE 233 (640)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~ 233 (640)
+ .+|..++++.. +.+++| |+|||+++.+|++++| .++|++|+.+.+.
T Consensus 136 ~----------------------~ll~~l~~~~~----~~~~~v-I~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~ 188 (257)
T 1lv7_A 136 N----------------------QMLVEMDGFEG----NEGIIV-IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 188 (257)
T ss_dssp H----------------------HHHHHHHTCCS----SSCEEE-EEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred H----------------------HHHHHhhCccc----CCCEEE-EEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHH
Confidence 5 78888888776 778999 9999999999999986 6789999955555
Q ss_pred HHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccccc
Q psy10020 234 TILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVML 313 (640)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~ 313 (640)
.++ +.+.. ...+.++.++..+|..|+||+++|+.++|. ++++.+.++....| +
T Consensus 189 ~il-~~~~~------------------~~~l~~~~~~~~la~~~~G~~~~dl~~l~~-------~a~~~a~~~~~~~i-~ 241 (257)
T 1lv7_A 189 QIL-KVHMR------------------RVPLAPDIDAAIIARGTPGFSGADLANLVN-------EAALFAARGNKRVV-S 241 (257)
T ss_dssp HHH-HHHHT------------------TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH-------HHHHHHHHTTCSSB-C
T ss_pred HHH-HHHHh------------------cCCCCccccHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHhCCCcc-c
Confidence 555 33221 122345678899999999999999999999 88887777776666 9
Q ss_pred ccccchhhhhhccCCCC
Q psy10020 314 RKKLEEEYSIELGSPID 330 (640)
Q Consensus 314 ~~di~~~~ai~~~~~g~ 330 (640)
.+++ +.++..+..|.
T Consensus 242 ~~~~--~~a~~~~~~~~ 256 (257)
T 1lv7_A 242 MVEF--EKAKDKIMMGL 256 (257)
T ss_dssp HHHH--HHHHHHHTTCC
T ss_pred HHHH--HHHHHHHhcCC
Confidence 9999 88888776553
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=221.09 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=148.7
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhcc-CCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEA-NVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~-~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
+++++..|.. +...++|+||+||||||||++++++|..+ +.+++.+++.++...+.+..+..++.+|. .+|++|
T Consensus 31 p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl 109 (322)
T 1xwi_A 31 PIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSII 109 (322)
T ss_dssp HHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEE
T ss_pred HHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 3455666664 35667899999999999999999999988 78899999998888888888888888876 678999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
||||+|.+.+.+.... .... .++++
T Consensus 110 ~iDEid~l~~~~~~~~---------------------~~~~----------------------------------~~~~~ 134 (322)
T 1xwi_A 110 FIDEIDSLCGSRSENE---------------------SEAA----------------------------------RRIKT 134 (322)
T ss_dssp EEETTTGGGCCSSSCC---------------------TTHH----------------------------------HHHHH
T ss_pred EeecHHHhcccccccc---------------------chHH----------------------------------HHHHH
Confidence 9999999987765111 0111 34556
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHHH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETIL 236 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~l 236 (640)
+||..++++.. ...+|+| |+|||+|+.||++++| .++|++|+.+.+..++
T Consensus 135 ----------------------~ll~~ld~~~~---~~~~v~v-I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il 188 (322)
T 1xwi_A 135 ----------------------EFLVQMQGVGV---DNDGILV-LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMF 188 (322)
T ss_dssp ----------------------HHHHHHHCSSS---CCTTEEE-EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred ----------------------HHHHHHhcccc---cCCCEEE-EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHH
Confidence 78888988753 2568999 9999999999999998 7889999966565555
Q ss_pred HhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhc
Q psy10020 237 LKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLN 306 (640)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~ 306 (640)
+.+.. . .... ..+.++..||+.|+||||+||..+|+ ++++.+.|+
T Consensus 189 -~~~l~----~------------~~~~-l~~~~l~~la~~t~G~sgadl~~l~~-------~A~~~a~r~ 233 (322)
T 1xwi_A 189 -KLHLG----T------------TQNS-LTEADFRELGRKTDGYSGADISIIVR-------DALMQPVRK 233 (322)
T ss_dssp -HHHHT----T------------CCBC-CCHHHHHHHHHTCTTCCHHHHHHHHH-------HHHTHHHHH
T ss_pred -HHHHh----c------------CCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHH
Confidence 33221 0 0011 14678999999999999999999999 666555543
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.89 E-value=4.5e-24 Score=222.98 Aligned_cols=186 Identities=23% Similarity=0.330 Sum_probs=145.3
Q ss_pred ccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccccc
Q psy10020 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFL 82 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~i 82 (640)
+.+++.|..+++..++|++|+||||||||+++++||+.++.+++.+++.++...+.+.....++.+|. .+|+++|+
T Consensus 35 ~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~i 114 (301)
T 3cf0_A 35 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 114 (301)
T ss_dssp HHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEE
T ss_pred hhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEE
Confidence 45667788888889999999999999999999999999999999999999888887877777777776 56899999
Q ss_pred chhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhh
Q psy10020 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKE 162 (640)
Q Consensus 83 deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (640)
||+|.+...+..... ...... .++++
T Consensus 115 DEid~l~~~~~~~~~------------------~~~~~~----------------------------------~~~~~-- 140 (301)
T 3cf0_A 115 DELDSIAKARGGNIG------------------DGGGAA----------------------------------DRVIN-- 140 (301)
T ss_dssp CSTTHHHHHHTTTTC------------------CSSCSC----------------------------------CHHHH--
T ss_pred EChHHHhhccCCCcC------------------CcchHH----------------------------------HHHHH--
Confidence 999999876642111 000000 23445
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHHH
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETIL 236 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~l 236 (640)
.||..++++.. ..+|+| |+|||+++.||++++| .++|++|+.+.+..++
T Consensus 141 --------------------~lL~~l~~~~~----~~~v~v-i~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il 195 (301)
T 3cf0_A 141 --------------------QILTEMDGMST----KKNVFI-IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAIL 195 (301)
T ss_dssp --------------------HHHHHHHSSCT----TSSEEE-EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred --------------------HHHHHhhcccC----CCCEEE-EEecCCccccChHHhcCCccceEEecCCcCHHHHHHHH
Confidence 78888888776 678999 9999999999999986 7899999955555554
Q ss_pred HhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhh
Q psy10020 237 LKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSH 290 (640)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~ 290 (640)
+.+.. ...+..+++++.+|..|.||||+||.++|+
T Consensus 196 -~~~l~------------------~~~~~~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 196 -KANLR------------------KSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp -HHHHT------------------TSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred -HHHHc------------------cCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence 22221 011234688999999999999999999999
No 15
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.89 E-value=1.4e-23 Score=213.14 Aligned_cols=209 Identities=34% Similarity=0.459 Sum_probs=158.9
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++..+..++++++.+++|++|+||||||||||+++|++..+.+++.+++.++...+.+.....+..+|+ ..|++++
T Consensus 34 ~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 345667889999999999999999999999999999999999999999888776666655666777776 3578999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
+||+|.+...+..... ..+.+. .+.++
T Consensus 114 ~Deid~l~~~~~~~~~------------------~~~~~~----------------------------------~~~~~- 140 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVG------------------GGNDER----------------------------------EQTLN- 140 (254)
T ss_dssp EETHHHHHC---------------------------CHHH----------------------------------HHHHH-
T ss_pred ehhhhhhhcccCcccc------------------ccchHH----------------------------------HHHHH-
Confidence 9999999865541000 011122 34455
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETI 235 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~ 235 (640)
.++..|++... ...+++ +++||+|+.||++++| .++|++|+.+.+..+
T Consensus 141 ---------------------~ll~~l~g~~~----~~~~i~-~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i 194 (254)
T 1ixz_A 141 ---------------------QLLVEMDGFEK----DTAIVV-MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 194 (254)
T ss_dssp ---------------------HHHHHHHTCCT----TCCEEE-EEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHH
T ss_pred ---------------------HHHHHHhCCCC----CCCEEE-EEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHH
Confidence 77788888766 667888 9999999999999997 789999996666665
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccccccc
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRK 315 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~ 315 (640)
+ +.+.. ...+..+.++..+|..|+||+|+|+.++|+ ++++.+.++....| +.+
T Consensus 195 l-~~~~~------------------~~~~~~~~~~~~la~~~~G~~~~dl~~~~~-------~a~~~a~~~~~~~I-~~~ 247 (254)
T 1ixz_A 195 L-RIHAR------------------GKPLAEDVDLALLAKRTPGFVGADLENLLN-------EAALLAAREGRRKI-TMK 247 (254)
T ss_dssp H-HHHHT------------------TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH-------HHHHHHHHTTCSSB-CHH
T ss_pred H-HHHHc------------------CCCCCcccCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHhcCCCc-CHH
Confidence 5 33221 123356788999999999999999999999 88877777766666 888
Q ss_pred ccchhhh
Q psy10020 316 KLEEEYS 322 (640)
Q Consensus 316 di~~~~a 322 (640)
|+ +++
T Consensus 248 dl--~~a 252 (254)
T 1ixz_A 248 DL--EEA 252 (254)
T ss_dssp HH--HHH
T ss_pred HH--HHH
Confidence 88 444
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.88 E-value=5.5e-23 Score=216.69 Aligned_cols=193 Identities=20% Similarity=0.224 Sum_probs=145.7
Q ss_pred ccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccccc
Q psy10020 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFL 82 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~i 82 (640)
+..+..+.. +...++|+||+||||||||++++++|..++.+++.+++.++...+.+.....++.+|. .+|++|||
T Consensus 38 ~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~i 116 (322)
T 3eie_A 38 VKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 116 (322)
T ss_dssp HHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEE
T ss_pred HhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEe
Confidence 344555555 4466788999999999999999999999999999999999988888888888888876 67899999
Q ss_pred chhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhh
Q psy10020 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKE 162 (640)
Q Consensus 83 deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (640)
||+|.+...+..... ... .++.+
T Consensus 117 DEid~l~~~~~~~~~---------------------~~~----------------------------------~~~~~-- 139 (322)
T 3eie_A 117 DQVDALTGTRGEGES---------------------EAS----------------------------------RRIKT-- 139 (322)
T ss_dssp ECGGGGSCC---------------------------CCT----------------------------------HHHHH--
T ss_pred chhhhhhccCCCCcc---------------------hHH----------------------------------HHHHH--
Confidence 999999977641110 000 23445
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHHHHh
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETILLK 238 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~l~~ 238 (640)
.|+..++++.. ...+|+| |+|||+++.||++++| .++|++|+.+.+..++ +
T Consensus 140 --------------------~ll~~l~~~~~---~~~~v~v-i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il-~ 194 (322)
T 3eie_A 140 --------------------ELLVQMNGVGN---DSQGVLV-LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF-E 194 (322)
T ss_dssp --------------------HHHHHHGGGGT---SCCCEEE-EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHH-H
T ss_pred --------------------HHHHHhccccc---cCCceEE-EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHH-H
Confidence 78888888753 2567899 9999999999999999 7889999966666655 3
Q ss_pred hhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhc
Q psy10020 239 NFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLN 306 (640)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~ 306 (640)
.+.. . .... ..+.++..||..|+||||+||..+|+ ++++.+.++
T Consensus 195 ~~~~----~------------~~~~-~~~~~l~~la~~t~g~sg~di~~l~~-------~a~~~a~r~ 238 (322)
T 3eie_A 195 INVG----D------------TPCV-LTKEDYRTLGAMTEGYSGSDIAVVVK-------DALMQPIRK 238 (322)
T ss_dssp HHHT----T------------CCCC-CCHHHHHHHHHTTTTCCHHHHHHHHH-------HHTTHHHHH
T ss_pred HHhc----c------------CCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHH
Confidence 3221 0 0011 14678999999999999999999999 665555443
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.88 E-value=1.6e-22 Score=216.17 Aligned_cols=192 Identities=20% Similarity=0.221 Sum_probs=141.2
Q ss_pred cccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccccc
Q psy10020 8 KRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFLH 83 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~id 83 (640)
..+..|.. +...++|+||+||||||||++++++|..++.+++.+++.++...+.+.....++.+|. .+|++||||
T Consensus 72 ~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iD 150 (355)
T 2qp9_X 72 KFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFID 150 (355)
T ss_dssp HCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEE
T ss_pred hCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEe
Confidence 44555655 4567789999999999999999999999999999999998888777877777887776 478999999
Q ss_pred hhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhH
Q psy10020 84 EITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEK 163 (640)
Q Consensus 84 eid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (640)
|+|.+...+..... ... ..+.+
T Consensus 151 Eid~l~~~r~~~~~---------------------~~~----------------------------------~~~~~--- 172 (355)
T 2qp9_X 151 QVDALTGTRGEGES---------------------EAS----------------------------------RRIKT--- 172 (355)
T ss_dssp CGGGGTC------C---------------------THH----------------------------------HHHHH---
T ss_pred chHhhcccCCCCcc---------------------hHH----------------------------------HHHHH---
Confidence 99999877651110 111 34455
Q ss_pred HHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHHHHhh
Q psy10020 164 VLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETILLKN 239 (640)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~l~~~ 239 (640)
.||..|+++.. ...+|+| |+|||+++.||++++| .++|++|+.+.+..++ +.
T Consensus 173 -------------------~ll~~l~~~~~---~~~~v~v-I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il-~~ 228 (355)
T 2qp9_X 173 -------------------ELLVQMNGVGN---DSQGVLV-LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF-EI 228 (355)
T ss_dssp -------------------HHHHHHHHCC------CCEEE-EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHH-HH
T ss_pred -------------------HHHHHhhcccc---cCCCeEE-EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHH-HH
Confidence 78888887754 1467899 9999999999999998 7889999966666665 33
Q ss_pred hhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhc
Q psy10020 240 FAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLN 306 (640)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~ 306 (640)
+.. . .... -.+.+++.||..|+||+|+||..+|+ ++++.+.++
T Consensus 229 ~l~----~------------~~~~-~~~~~l~~la~~t~G~sg~dl~~l~~-------~A~~~a~~~ 271 (355)
T 2qp9_X 229 NVG----D------------TPSV-LTKEDYRTLGAMTEGYSGSDIAVVVK-------DALMQPIRK 271 (355)
T ss_dssp HHT----T------------SCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH-------HHHHHHHHH
T ss_pred HHh----h------------CCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHH
Confidence 221 0 0011 14678999999999999999999999 666655544
No 18
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.88 E-value=1.4e-22 Score=208.92 Aligned_cols=210 Identities=34% Similarity=0.455 Sum_probs=158.4
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++..+..++++++.+++|++|+||||||||||+++|++..+.+++.+++.++...+.+.....+..+|+ ..|++++
T Consensus 58 ~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 137 (278)
T 1iy2_A 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 137 (278)
T ss_dssp HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEE
T ss_pred HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEe
Confidence 345667888999999999999999999999999999999999999999888776665555566667776 3578999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
+||+|.+...+..... ..+.+. ...++
T Consensus 138 iDeid~l~~~~~~~~~------------------~~~~~~----------------------------------~~~~~- 164 (278)
T 1iy2_A 138 IDEIDAVGRKRGSGVG------------------GGNDER----------------------------------EQTLN- 164 (278)
T ss_dssp EETHHHHHCC--------------------------CHHH----------------------------------HHHHH-
T ss_pred hhhhHhhhcccccccC------------------CcchHH----------------------------------HHHHH-
Confidence 9999998865541000 011111 34445
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETI 235 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~ 235 (640)
.++..+++... ...+++ +++||+|+.||++++| .++|++|+.+.+..+
T Consensus 165 ---------------------~ll~~lsgg~~----~~~~i~-~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i 218 (278)
T 1iy2_A 165 ---------------------QLLVEMDGFEK----DTAIVV-MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218 (278)
T ss_dssp ---------------------HHHHHHTTCCT----TCCEEE-EEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHH
T ss_pred ---------------------HHHHHHhCCCC----CCCEEE-EEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHH
Confidence 67788888766 567888 9999999999999997 789999996655555
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccccccc
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRK 315 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~ 315 (640)
+ +.+.. ...+..+.++..+|..|+|++|+||.++|+ +++..+.++....| +.+
T Consensus 219 l-~~~~~------------------~~~~~~~~~~~~la~~~~G~~~~dl~~l~~-------~a~~~a~~~~~~~I-~~~ 271 (278)
T 1iy2_A 219 L-RIHAR------------------GKPLAEDVDLALLAKRTPGFVGADLENLLN-------EAALLAAREGRRKI-TMK 271 (278)
T ss_dssp H-HHHHT------------------TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH-------HHHHHHHHTTCCSB-CHH
T ss_pred H-HHHHc------------------cCCCCcccCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHhCCCCc-CHH
Confidence 5 32221 123345778999999999999999999999 77777777666666 888
Q ss_pred ccchhhhh
Q psy10020 316 KLEEEYSI 323 (640)
Q Consensus 316 di~~~~ai 323 (640)
|+ ++++
T Consensus 272 dl--~~a~ 277 (278)
T 1iy2_A 272 DL--EEAA 277 (278)
T ss_dssp HH--HHHT
T ss_pred HH--HHHh
Confidence 88 5443
No 19
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=99.88 E-value=1.4e-23 Score=209.57 Aligned_cols=196 Identities=17% Similarity=0.246 Sum_probs=118.7
Q ss_pred CCCCCccchhhhHhhhhhhcccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCC-ccccC
Q psy10020 328 PIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPS-EQKLY 406 (640)
Q Consensus 328 ~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~-~~~~~ 406 (640)
.|.++++..++ +.+++++||||+||||+++++++.+|+.+++|+||| .++||++++|. +.++.
T Consensus 2 ~G~ekk~~~~s---------------~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG-~alG~t~~~P~ed~~~~ 65 (238)
T 2di4_A 2 QGPLGSHMTIS---------------PKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRG-MALGVTQQLPIEDKHIY 65 (238)
T ss_dssp --------CCC---------------HHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------CCCC
T ss_pred CCccccCCCCC---------------HHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecC-CcceEEEeCCccccccc
Confidence 35566666677 899999999999999999999999999999999997 59999999997 57789
Q ss_pred CHHHHhhhhhhhccccccceEEe--ccccchhhhhHHHHHHHHHHHhchhhhcccCCCCcccceEEEeecCccccCcccc
Q psy10020 407 NKEEIFSPIDTSRSHRVLRKWVL--SSLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQY 484 (640)
Q Consensus 407 t~~~l~~~i~~~l~G~aAE~ii~--g~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v~kvtI~prg~~a~G~t~~ 484 (640)
|+.+++++|+++|+|||||+++| |.+++||..+-..++.+|..- +..+.| ++.+..+.+.
T Consensus 66 tk~~l~~~i~v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~M----V~~~GM--s~~lG~v~~~------------ 127 (238)
T 2di4_A 66 DKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRM----VSMWGM--SDKVGPIAIR------------ 127 (238)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHH----HHTSCC--CTTTCSCCCC------------
T ss_pred CHHHHHHHHHHHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHH----HHHhCC--CCCCCceeec------------
Confidence 99999999999999999999999 789999976555666555322 222335 3333333331
Q ss_pred CcchhhccchhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccccccChHhhhcchHHhhhcccCC--
Q psy10020 485 TPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEETLDPKKEMTVNREQP-- 562 (640)
Q Consensus 485 ~p~e~~~~~~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~~~~t~~~~~~~i~~~~~~r~~~-- 562 (640)
+.++. -|| . +.....++-...+.+|.-...+..+...
T Consensus 128 -~~~~~--------------------------------------flg-~-~~~~~~~Se~ta~~iD~Ev~~il~~ay~~a 166 (238)
T 2di4_A 128 -RVANP--------------------------------------FLG-G-MTTAVDTSPDLLREIDEEVKRIITEQYEKA 166 (238)
T ss_dssp -C--------------------------------------------------CCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCccc--------------------------------------ccc-c-cccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 011 0 0000111111122222222222222222
Q ss_pred cchHHhhHHHHHHHHHHhHhHhcCCHHHHHHHhcCC
Q psy10020 563 PSHDKKKRKCLTEISVTTMVLSSLNRREKEDRIGES 598 (640)
Q Consensus 563 ~~~~~~~r~~l~~l~~~ll~~ETL~~~ei~~i~~~~ 598 (640)
..+..+||..++.||+.|+++|||+++||+.|+++.
T Consensus 167 ~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~ 202 (238)
T 2di4_A 167 KAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY 202 (238)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccC
Confidence 667788999999999999999999999999999864
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=9.5e-23 Score=210.19 Aligned_cols=214 Identities=26% Similarity=0.315 Sum_probs=165.8
Q ss_pred ccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccccc
Q psy10020 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFL 82 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~i 82 (640)
+..+..+..+++..+.+++|+||||||||+++++++..++.+++.+++..+...+.+.....++..|. ..|++||+
T Consensus 37 ~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 116 (285)
T 3h4m_A 37 LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFI 116 (285)
T ss_dssp HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEE
Confidence 44567778888888999999999999999999999999999999999988877777776666666665 56799999
Q ss_pred chhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhh
Q psy10020 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKE 162 (640)
Q Consensus 83 deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (640)
||+|.+...+..... +.+.+. ...+.
T Consensus 117 DEid~l~~~~~~~~~------------------~~~~~~----------------------------------~~~l~-- 142 (285)
T 3h4m_A 117 DEIDAIAAKRTDALT------------------GGDREV----------------------------------QRTLM-- 142 (285)
T ss_dssp ETTHHHHBCCSSSCC------------------GGGGHH----------------------------------HHHHH--
T ss_pred ECHHHhcccCccccC------------------CccHHH----------------------------------HHHHH--
Confidence 999999876652111 011111 23344
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHHH
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETIL 236 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~l 236 (640)
.+++.++++.. ..+++| |+|||+++.+|++++| .+.|+.|+.+.+..++
T Consensus 143 --------------------~ll~~~~~~~~----~~~~~v-I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il 197 (285)
T 3h4m_A 143 --------------------QLLAEMDGFDA----RGDVKI-IGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEIL 197 (285)
T ss_dssp --------------------HHHHHHHTTCS----SSSEEE-EEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHH
T ss_pred --------------------HHHHHhhCCCC----CCCEEE-EEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHH
Confidence 67777777766 678999 9999999999999997 7889999966555555
Q ss_pred HhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccccc
Q psy10020 237 LKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKK 316 (640)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~d 316 (640)
+.+.. ...+..+.++..++..+.|++++++..+|+ +++..+.++....| +.++
T Consensus 198 -~~~~~------------------~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~-------~a~~~a~~~~~~~I-~~~d 250 (285)
T 3h4m_A 198 -KIHTR------------------KMNLAEDVNLEEIAKMTEGCVGAELKAICT-------EAGMNAIRELRDYV-TMDD 250 (285)
T ss_dssp -HHHHT------------------TSCBCTTCCHHHHHHHCTTCCHHHHHHHHH-------HHHHHHHHTTCSSB-CHHH
T ss_pred -HHHHh------------------cCCCCCcCCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHhccCcC-CHHH
Confidence 33221 122345678999999999999999999999 88777777777766 9999
Q ss_pred cchhhhhhccCC
Q psy10020 317 LEEEYSIELGSP 328 (640)
Q Consensus 317 i~~~~ai~~~~~ 328 (640)
+ ..++..+..
T Consensus 251 ~--~~al~~~~~ 260 (285)
T 3h4m_A 251 F--RKAVEKIME 260 (285)
T ss_dssp H--HHHHHHHHH
T ss_pred H--HHHHHHHHh
Confidence 9 888876543
No 21
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.87 E-value=3e-23 Score=210.76 Aligned_cols=228 Identities=39% Similarity=0.533 Sum_probs=149.8
Q ss_pred ccccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccc
Q psy10020 5 DYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRV 80 (640)
Q Consensus 5 ~~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il 80 (640)
.++..+..+..+++..+++++|+||||||||+++++++..++.+++.+++.++...+.+.....++..|. ..|++|
T Consensus 23 ~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl 102 (262)
T 2qz4_A 23 DYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIV 102 (262)
T ss_dssp HHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEE
Confidence 3455667788888899999999999999999999999999999999999988876666666666666666 458999
Q ss_pred ccchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhh
Q psy10020 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLR 160 (640)
Q Consensus 81 ~ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (640)
|+||+|.+...+..... +..+.+. ...++
T Consensus 103 ~iDeid~l~~~~~~~~~-----------------~~~~~~~----------------------------------~~~l~ 131 (262)
T 2qz4_A 103 YIDEIDAVGKKRSTTMS-----------------GFSNTEE----------------------------------EQTLN 131 (262)
T ss_dssp EEECC----------------------------------------------------------------------CHHHH
T ss_pred EEeCcchhhcccccccc-----------------CccchhH----------------------------------HHHHH
Confidence 99999999866641110 0001111 23445
Q ss_pred hhHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHH
Q psy10020 161 KEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAET 234 (640)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~ 234 (640)
.|+..++++.. ..+++| |+|||.++.+|++++| .++|++|+.+.+..
T Consensus 132 ----------------------~ll~~~~~~~~----~~~~~v-i~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~ 184 (262)
T 2qz4_A 132 ----------------------QLLVEMDGMGT----TDHVIV-LASTNRADILDGALMRPGRLDRHVFIDLPTLQERRE 184 (262)
T ss_dssp ----------------------HHHHHHHTCCT----TCCEEE-EEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHH
T ss_pred ----------------------HHHHHhhCcCC----CCCEEE-EecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHH
Confidence 67778887766 678999 9999999999999986 67899999554544
Q ss_pred HHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccc
Q psy10020 235 ILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLR 314 (640)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~ 314 (640)
++ +.+... ..+..+.++.+..++..+.||+|++|..+|+ ++++.+.++....| +.
T Consensus 185 il-~~~~~~----------------~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~-------~a~~~a~~~~~~~i-~~ 239 (262)
T 2qz4_A 185 IF-EQHLKS----------------LKLTQSSTFYSQRLAELTPGFSGADIANICN-------EAALHAAREGHTSV-HT 239 (262)
T ss_dssp HH-HHHHHH----------------TTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH-------HHHTC--------C-CB
T ss_pred HH-HHHHHh----------------CCCCcchhhHHHHHHHHCCCCCHHHHHHHHH-------HHHHHHHHcCCCCC-CH
Confidence 44 222210 1112233456689999999999999999999 77777776666666 99
Q ss_pred cccchhhhhhccCCCCCCccchh
Q psy10020 315 KKLEEEYSIELGSPIDTSRSHRV 337 (640)
Q Consensus 315 ~di~~~~ai~~~~~g~~~~~~~~ 337 (640)
+++ ..++.++..+..++++.+
T Consensus 240 ~d~--~~a~~~~~~~~~~~~~~~ 260 (262)
T 2qz4_A 240 LNF--EYAVERVLAGTAKKSKIL 260 (262)
T ss_dssp CCH--HHHHHHHHHHHHCC----
T ss_pred HHH--HHHHHHhccChhhhhHhh
Confidence 999 889988877766665443
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.86 E-value=4.2e-22 Score=219.13 Aligned_cols=192 Identities=20% Similarity=0.208 Sum_probs=137.2
Q ss_pred cccccccccCcccCCceEEEcCCCchHHHHHHHHHhcc-CCCeEEecCchhhhhhccchhhhHhhhhh----hccccccc
Q psy10020 8 KRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEA-NVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFL 82 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~-~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~i 82 (640)
..+..|.. +...++|+||+||||||||++++++|..+ +.+++.+++.++...+.+.....++.+|. .+|++|||
T Consensus 155 ~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~i 233 (444)
T 2zan_A 155 KFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFI 233 (444)
T ss_dssp HCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEE
T ss_pred hCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEE
Confidence 34445543 24567889999999999999999999988 78899999999888888877777777776 57899999
Q ss_pred chhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhh
Q psy10020 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKE 162 (640)
Q Consensus 83 deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (640)
||+|.+.+.+..... ... .++.+
T Consensus 234 DEid~l~~~~~~~~~---------------------~~~----------------------------------~~~~~-- 256 (444)
T 2zan_A 234 DEIDSLCGSRSENES---------------------EAA----------------------------------RRIKT-- 256 (444)
T ss_dssp SCTTTTCCCSSCCCC---------------------GGG----------------------------------HHHHH--
T ss_pred echHhhccCCCCccc---------------------cHH----------------------------------HHHHH--
Confidence 999999876651111 001 34455
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHHHHh
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETILLK 238 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~l~~ 238 (640)
.||..++++.. ...+|+| |+|||+|+.||++++| .++|++|+.+.+..++ +
T Consensus 257 --------------------~lL~~l~~~~~---~~~~v~v-I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il-~ 311 (444)
T 2zan_A 257 --------------------EFLVQMQGVGV---DNDGILV-LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMF-R 311 (444)
T ss_dssp --------------------HHHTTTTCSSC---CCSSCEE-EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHH-H
T ss_pred --------------------HHHHHHhCccc---CCCCEEE-EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHH-H
Confidence 78889988753 2567899 9999999999999998 7889999966555555 3
Q ss_pred hhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhc
Q psy10020 239 NFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLN 306 (640)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~ 306 (640)
.... . .... ..+.+++.||..|+||||+||..+|+ ++++.+.|+
T Consensus 312 ~~l~----~------------~~~~-l~~~~l~~la~~t~G~sgadl~~l~~-------~a~~~a~r~ 355 (444)
T 2zan_A 312 LHLG----S------------TQNS-LTEADFQELGRKTDGYSGADISIIVR-------DALMQPVRK 355 (444)
T ss_dssp HHHT----T------------SCEE-CCHHHHHHHHHHTTTCCHHHHHHHHH-------HHHTHHHHH
T ss_pred HHHh----c------------CCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHH
Confidence 2221 0 0001 14688999999999999999999999 665555443
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.85 E-value=6.9e-23 Score=225.91 Aligned_cols=275 Identities=15% Similarity=0.179 Sum_probs=173.2
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccch
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQ 359 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~ 359 (640)
++++++.+.+.|.|+.+++.+|..++...++++++|++ +++..-............+++++|+|.+||+|.....++
T Consensus 80 is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEi---d~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 80 ISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEI---DAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp EEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETG---GGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEech---hhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 45677778888999999999999999999999999999 554332111000111223456789999999997665544
Q ss_pred hccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEe---cc---cc
Q psy10020 360 VAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVL---SS---LL 433 (640)
Q Consensus 360 vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~---g~---~t 433 (640)
+ |+ .+|+++.++++.++|+ +|+..+.+.+|+. ..|.+++..+.... ...+++.+ .. ..
T Consensus 157 V--------Ia--aTn~~~~Ld~allR~g-RFd~~i~i~~Pd~---~~R~~Il~~~~~~~--~l~~~v~l~~la~~t~G~ 220 (476)
T 2ce7_A 157 V--------MA--ATNRPDILDPALLRPG-RFDKKIVVDPPDM---LGRKKILEIHTRNK--PLAEDVNLEIIAKRTPGF 220 (476)
T ss_dssp E--------EE--EESCGGGSCGGGGSTT-SSCEEEECCCCCH---HHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTC
T ss_pred E--------EE--ecCChhhhchhhcccC-cceeEeecCCCCH---HHHHHHHHHHHHhC--CCcchhhHHHHHHhcCCC
Confidence 4 44 4477888999888885 6666555555542 22334443322211 11122212 22 23
Q ss_pred chhhhhHHHHHHHHHHHhchhhhcccCCCCccc-ceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCC
Q psy10020 434 TVNKFASLVCRQVAFHESGHALVGWLLPHTDAL-LKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLP 512 (640)
Q Consensus 434 tGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v-~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~ 512 (640)
+|+++ .|.++.+++.+.+.....+.+.+++.+ .++..++..... .+.+++ ++.++|||+||++++++++
T Consensus 221 sgadL-~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~~~~~~~----~~~~~e-----~~~~a~~e~G~a~~~~~l~ 290 (476)
T 2ce7_A 221 VGADL-ENLVNEAALLAAREGRDKITMKDFEEAIDRVIAGPARKSL----LISPAE-----KRIIAYHEAGHAVVSTVVP 290 (476)
T ss_dssp CHHHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC------------CCCHHH-----HHHHHHHHHHHHHHHHHST
T ss_pred cHHHH-HHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcCccccch----hhhcch-----hhhhHHHHhhhHHHhhccC
Confidence 55777 677777777766544444555555554 455443322111 122332 6789999999999999999
Q ss_pred CCCcceeEeeecCCCCcccceeeccccc-cccChHhhhcchHHhhhcccCC------------cchHHhhHHHHHHHHHH
Q psy10020 513 HTDALLKVTIVPRTSLALGFAQYTPSEQ-KLYNKEETLDPKKEMTVNREQP------------PSHDKKKRKCLTEISVT 579 (640)
Q Consensus 513 ~~~~v~k~TiipRg~~alG~~~~~p~~~-~~~t~~~~~~~i~~~~~~r~~~------------~~~~~~~r~~l~~l~~~ 579 (640)
..++++|+||+|||..++||+++.|+++ +++|+.+++++|.+++|||++| +++..+++.+..||++|
T Consensus 291 ~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~ 370 (476)
T 2ce7_A 291 NGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQL 370 (476)
T ss_dssp TCCCCCEEECC-----------------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTS
T ss_pred CccccceeeeecCcccccceEEEcCcccccccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 9999999999999966999999999765 6899999999999999999888 77888899999999999
Q ss_pred hHhH
Q psy10020 580 TMVL 583 (640)
Q Consensus 580 ll~~ 583 (640)
+|..
T Consensus 371 gm~~ 374 (476)
T 2ce7_A 371 GMSE 374 (476)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9964
No 24
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.85 E-value=5.7e-22 Score=206.33 Aligned_cols=175 Identities=13% Similarity=0.037 Sum_probs=116.9
Q ss_pred ccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh--------hcccccccchhh
Q psy10020 15 NLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV--------FLHCRVFLHEIT 86 (640)
Q Consensus 15 ~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--------~~p~il~ideid 86 (640)
..+...|+|++|+||||||||+++++||..++.+++.+++..+...+.|.....++..|. .+|++||+||+|
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 346777899999999999999999999999999999999999988888888888877775 368999999999
Q ss_pred hhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHHh
Q psy10020 87 IFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLK 166 (640)
Q Consensus 87 ~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (640)
.+++++..... ..... +.+.+
T Consensus 110 ~~~~~~~~~~~-------------------~~~~~----------------------------------~~v~~------ 130 (293)
T 3t15_A 110 AGAGRMGGTTQ-------------------YTVNN----------------------------------QMVNA------ 130 (293)
T ss_dssp ---------------------------------CH----------------------------------HHHHH------
T ss_pred hhcCCCCCCcc-------------------ccchH----------------------------------HHHHH------
Confidence 99875541111 00000 22334
Q ss_pred hhHHhhhhccchhhhhhHhhhcccchh-------hhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHH
Q psy10020 167 IDAELRHKKELDLERQILLHEITKLKS-------ELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETI 235 (640)
Q Consensus 167 ~~~~~~~~~~~~~~~~~lL~~ld~~~~-------~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~ 235 (640)
.|++.||+... ......+|+| |+|||+++.||++++| ...+.+|+.+.+..+
T Consensus 131 ----------------~Ll~~ld~~~~~~~~~~~~~~~~~~v~v-I~ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~I 193 (293)
T 3t15_A 131 ----------------TLMNIADNPTNVQLPGMYNKQENARVPI-IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 193 (293)
T ss_dssp ----------------HHHHHHHCCC-----------CCCCCCE-EEECSSCCC--CHHHHHHHEEEEEECCCHHHHHHH
T ss_pred ----------------HHHHHhccccccccccccccccCCCcEE-EEecCCcccCCHHHhCCCCCceeEeCcCHHHHHHH
Confidence 55555553320 0112567899 9999999999999997 223447895555555
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhh
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQ 288 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l 288 (640)
+ +.+.. +..++++.++..+.||+|++|..+
T Consensus 194 l-~~~~~----------------------~~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 194 C-TGIFR----------------------TDNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp H-HHHHG----------------------GGCCCHHHHHHHHHHSCSCCHHHH
T ss_pred H-HHhcc----------------------CCCCCHHHHHHHhCCCCcccHHHH
Confidence 5 33322 235778999999999999999754
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.85 E-value=6.2e-23 Score=209.86 Aligned_cols=222 Identities=37% Similarity=0.469 Sum_probs=158.1
Q ss_pred cccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccc
Q psy10020 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVF 81 (640)
Q Consensus 6 ~l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~ 81 (640)
++..+..+.+++...++|++|+||||||||+++++++..++.+++.+++..+...+.+.....++..|. ..|++||
T Consensus 29 ~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~ 108 (268)
T 2r62_A 29 FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIF 108 (268)
T ss_dssp HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEE
T ss_pred HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEE
Confidence 345567778888899999999999999999999999999999999999888776665555444455554 5679999
Q ss_pred cchhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhh
Q psy10020 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRK 161 (640)
Q Consensus 82 ideid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
+||+|.+...+...+. .+.+.+. .+.++
T Consensus 109 iDEid~l~~~~~~~~~-----------------~~~~~~~----------------------------------~~~~~- 136 (268)
T 2r62_A 109 IDEIDAIGKSRAAGGV-----------------VSGNDER----------------------------------EQTLN- 136 (268)
T ss_dssp ESCGGGTTC---------------------------CCCS----------------------------------CSSTT-
T ss_pred EeChhhhccccccccc-----------------CCCchhH----------------------------------HHHHH-
Confidence 9999999876641110 0001111 23344
Q ss_pred hHHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHH
Q psy10020 162 EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETI 235 (640)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~ 235 (640)
.|+..++++.. ....++| |+|||.++.+|++++| .++|++|+.+.+..+
T Consensus 137 ---------------------~ll~~l~~~~~---~~~~v~v-i~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~i 191 (268)
T 2r62_A 137 ---------------------QLLAEMDGFGS---ENAPVIV-LAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEI 191 (268)
T ss_dssp ---------------------TTTTTTTCSSC---SCSCCEE-EECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHH
T ss_pred ---------------------HHHHHhhCccc---CCCCEEE-EEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHH
Confidence 67778877654 2445888 9999999999999987 689999994444444
Q ss_pred HHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCccccccc
Q psy10020 236 LLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRK 315 (640)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~ 315 (640)
+ +.+.. .+.+..+++++.++..|.||+|+||.++|+ ++++.+.++....| +.+
T Consensus 192 l-~~~~~------------------~~~~~~~~~~~~la~~~~g~~g~dl~~l~~-------~a~~~a~~~~~~~i-~~~ 244 (268)
T 2r62_A 192 L-KVHIK------------------GVKLANDVNLQEVAKLTAGLAGADLANIIN-------EAALLAGRNNQKEV-RQQ 244 (268)
T ss_dssp H-HHHTS------------------SSCCCSSCCTTTTTSSSCSSCHHHHHHHHH-------HHHHTTSSSCCCSC-CHH
T ss_pred H-HHHHh------------------cCCCCCccCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHhccCCc-CHH
Confidence 4 22211 112235677889999999999999999999 77776665555555 999
Q ss_pred ccchhhhhhccCCCCCCc
Q psy10020 316 KLEEEYSIELGSPIDTSR 333 (640)
Q Consensus 316 di~~~~ai~~~~~g~~~~ 333 (640)
++ ..++.++.+....+
T Consensus 245 ~~--~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 245 HL--KEAVERGIAGLEKK 260 (268)
T ss_dssp HH--HTSCTTCCCCCC--
T ss_pred HH--HHHHHHHhhcchhh
Confidence 99 88888777665544
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.85 E-value=2e-21 Score=228.07 Aligned_cols=148 Identities=31% Similarity=0.463 Sum_probs=122.1
Q ss_pred ccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccccc
Q psy10020 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFL 82 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~i 82 (640)
+.++.+|+++++..+.+++|+||||||||||+++|++.++.+++.+++.++...+.+.....++.+|+ ..|+++|+
T Consensus 224 l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~i 303 (806)
T 1ypw_A 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303 (806)
T ss_dssp HHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred hhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEe
Confidence 56788999999999999999999999999999999999999999999998887777877788888887 56899999
Q ss_pred chhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhh
Q psy10020 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKE 162 (640)
Q Consensus 83 deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (640)
||+|.+...+... ..+.+ .++.+
T Consensus 304 DEid~l~~~~~~~----------------------~~~~~---------------------------------~~~~~-- 326 (806)
T 1ypw_A 304 DELDAIAPKREKT----------------------HGEVE---------------------------------RRIVS-- 326 (806)
T ss_dssp ESGGGTSCTTSCC----------------------CSHHH---------------------------------HHHHH--
T ss_pred ccHHHhhhccccc----------------------cchHH---------------------------------HHHHH--
Confidence 9999999766511 11110 34445
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHHH
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETIL 236 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~l 236 (640)
.|+..++++.. +..+++ |+|||+++.+|+++.| .+.+++|+.+.+..++
T Consensus 327 --------------------~Ll~ll~g~~~----~~~v~v-I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il 381 (806)
T 1ypw_A 327 --------------------QLLTLMDGLKQ----RAHVIV-MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp --------------------HHHHHHHSSCT----TSCCEE-EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHH
T ss_pred --------------------HHHHHhhhhcc----cccEEE-ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHH
Confidence 67788888877 788999 9999999999999987 6789999955555555
No 27
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.85 E-value=1.8e-21 Score=215.94 Aligned_cols=195 Identities=26% Similarity=0.354 Sum_probs=157.6
Q ss_pred ccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccccc
Q psy10020 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFL 82 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~i 82 (640)
+.++..|..++...+.|+||+||||||||+++++|+..++.+++.+++..+...+.+.....++..|. .+|++||+
T Consensus 224 l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfL 303 (489)
T 3hu3_A 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303 (489)
T ss_dssp HHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEe
Confidence 45677888888999999999999999999999999999999999999999988888877777777776 67899999
Q ss_pred chhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhh
Q psy10020 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKE 162 (640)
Q Consensus 83 deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (640)
||+|.+.+.+.... .+.. ..+.+
T Consensus 304 DEId~l~~~~~~~~----------------------~~~~---------------------------------~~~~~-- 326 (489)
T 3hu3_A 304 DELDAIAPKREKTH----------------------GEVE---------------------------------RRIVS-- 326 (489)
T ss_dssp ESHHHHCBCTTSCC----------------------CHHH---------------------------------HHHHH--
T ss_pred cchhhhcccccccc----------------------chHH---------------------------------HHHHH--
Confidence 99999998765111 1110 34555
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHHH
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETIL 236 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~l 236 (640)
.||..|+++.. ...++| |+|||+++.||++++| .++|++|+.+.+..+|
T Consensus 327 --------------------~LL~~ld~~~~----~~~v~v-IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL 381 (489)
T 3hu3_A 327 --------------------QLLTLMDGLKQ----RAHVIV-MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (489)
T ss_dssp --------------------HHHHHHHHSCT----TSCEEE-EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred --------------------HHHHHhhcccc----CCceEE-EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHH
Confidence 77888887776 778999 9999999999999988 6899999966666666
Q ss_pred HhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCc
Q psy10020 237 LKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEK 309 (640)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~ 309 (640)
+.... ...+..+.++..+|..|.||+|+|+..+|. ++++.+.++...
T Consensus 382 -~~~~~------------------~~~l~~~~~l~~la~~t~g~s~~dL~~L~~-------~A~~~a~r~~~~ 428 (489)
T 3hu3_A 382 -QIHTK------------------NMKLADDVDLEQVANETHGHVGADLAALCS-------EAALQAIRKKMD 428 (489)
T ss_dssp -HHHTT------------------TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH-------HHHHHHHHTTTT
T ss_pred -HHHHh------------------cCCCcchhhHHHHHHHccCCcHHHHHHHHH-------HHHHHHHHhccc
Confidence 33322 222345778999999999999999999999 888887776544
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.84 E-value=2.3e-22 Score=236.10 Aligned_cols=196 Identities=22% Similarity=0.291 Sum_probs=149.7
Q ss_pred ccccccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hccccccc
Q psy10020 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFL 82 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~i 82 (640)
+..+..+..+++..+++++|+||||||||+|+++||+.++.+++.+++.++...|.+.....++.+|+ ..||++|+
T Consensus 497 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~i 576 (806)
T 1ypw_A 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp SSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCC
T ss_pred hhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEE
Confidence 44566677778888889999999999999999999999999999999999988888888888888887 56899999
Q ss_pred chhhhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhh
Q psy10020 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKE 162 (640)
Q Consensus 83 deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (640)
||+|.+...+..... ..+... .++++
T Consensus 577 DEid~l~~~r~~~~~------------------~~~~~~----------------------------------~~v~~-- 602 (806)
T 1ypw_A 577 DELDSIAKARGGNIG------------------DGGGAA----------------------------------DRVIN-- 602 (806)
T ss_dssp SSHHHHCCTTTTCCS------------------HHHHHH----------------------------------HHHHH--
T ss_pred EChhhhhhhccCCCC------------------CcchhH----------------------------------HHHHH--
Confidence 999999977752111 000111 45667
Q ss_pred HHHhhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccHHHHHHHH
Q psy10020 163 KVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNREIAETIL 236 (640)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~~i~~~~l 236 (640)
+||..||++.. ...|+| |+|||+++.||+|++| .++|++|+.+.+..++
T Consensus 603 --------------------~LL~~ld~~~~----~~~v~v-I~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il 657 (806)
T 1ypw_A 603 --------------------QILTEMDGMST----KKNVFI-IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAIL 657 (806)
T ss_dssp --------------------HHHTTCC----------CCBC-CCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHT
T ss_pred --------------------HHHHHHhcccc----cCCeEE-EEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHH
Confidence 89999999887 788999 9999999999999996 8899999955555555
Q ss_pred HhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhcc
Q psy10020 237 LKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNL 307 (640)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~ 307 (640)
+.... ...+..++++..||..|.||||+||.++|+ ++++.+.++.
T Consensus 658 -~~~l~------------------~~~~~~~~~l~~la~~t~g~sgadi~~l~~-------~a~~~a~~~~ 702 (806)
T 1ypw_A 658 -KANLR------------------KSPVAKDVDLEFLAKMTNGFSGADLTEICQ-------RACKLAIRES 702 (806)
T ss_dssp -TTTTS------------------CC----CCCCSCSCGGGSSSCCHHHHHHHH-------HHHHHHHSCC
T ss_pred -HHHhc------------------cCCCCcccCHHHHHHhccccCHHHHHHHHH-------HHHHHHHHHH
Confidence 22221 122345778889999999999999999999 7777666553
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=196.86 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=153.2
Q ss_pred cccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccccchh
Q psy10020 10 PEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFLHEI 85 (640)
Q Consensus 10 ~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~idei 85 (640)
+..+..++ ..+++++|+||||||||+++++||..++.+++.+++..+...+.+.....++.+|. .+|++|||||+
T Consensus 107 ~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 107 PDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp TTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETH
T ss_pred hHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 34444332 55788999999999999999999999999999999998887777777777777666 56799999999
Q ss_pred hhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHH
Q psy10020 86 TIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVL 165 (640)
Q Consensus 86 d~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (640)
|.+...+..... ... .+..+
T Consensus 186 d~l~~~~~~~~~---------------------~~~----------------------------------~~~~~----- 205 (357)
T 3d8b_A 186 DSLLSQRGDGEH---------------------ESS----------------------------------RRIKT----- 205 (357)
T ss_dssp HHHTBC---------------------------CHH----------------------------------HHHHH-----
T ss_pred hhhhccCCCCcc---------------------hHH----------------------------------HHHHH-----
Confidence 999876641110 111 33445
Q ss_pred hhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHHHHhhhh
Q psy10020 166 KIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETILLKNFA 241 (640)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~l~~~~~ 241 (640)
.||..++++.. .....++| |+|||+++.||++++| .+++++|+.+.+..++ +.+.
T Consensus 206 -----------------~lL~~l~~~~~--~~~~~v~v-I~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il-~~~~ 264 (357)
T 3d8b_A 206 -----------------EFLVQLDGATT--SSEDRILV-VGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIV-INLM 264 (357)
T ss_dssp -----------------HHHHHHHC------CCCCEEE-EEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHH-HHHH
T ss_pred -----------------HHHHHHhcccc--cCCCCEEE-EEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHH-HHHH
Confidence 67778877654 12457888 9999999999999998 7789999966666666 3332
Q ss_pred hhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccC-----------cc
Q psy10020 242 HQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLE-----------KE 310 (640)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~-----------~~ 310 (640)
.. ..+.+ .+.++..|+..|.||+|+|+..+|. +++....|+.. ..
T Consensus 265 ~~----------------~~~~l-~~~~l~~la~~t~G~s~~dl~~l~~-------~a~~~~ir~l~~~~~~~~~~~~~~ 320 (357)
T 3d8b_A 265 SK----------------EQCCL-SEEEIEQIVQQSDAFSGADMTQLCR-------EASLGPIRSLQTADIATITPDQVR 320 (357)
T ss_dssp HT----------------SCBCC-CHHHHHHHHHHTTTCCHHHHHHHHH-------HHHTHHHHHCCC----------CC
T ss_pred hh----------------cCCCc-cHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHHhhhhhhccccccccC
Confidence 20 01111 2567899999999999999999999 66666555322 12
Q ss_pred cccccccchhhhhhccCCCCCC
Q psy10020 311 VMLRKKLEEEYSIELGSPIDTS 332 (640)
Q Consensus 311 ii~~~di~~~~ai~~~~~g~~~ 332 (640)
.|+.+|| ..++..+.+....
T Consensus 321 ~i~~~d~--~~al~~~~ps~~~ 340 (357)
T 3d8b_A 321 PIAYIDF--ENAFRTVRPSVSP 340 (357)
T ss_dssp CBCHHHH--HHHHHHHGGGCCC
T ss_pred CcCHHHH--HHHHHhcCCCCCH
Confidence 3488888 8888776655443
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=7.4e-20 Score=189.76 Aligned_cols=214 Identities=22% Similarity=0.294 Sum_probs=151.0
Q ss_pred cccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccccchh
Q psy10020 10 PEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFLHEI 85 (640)
Q Consensus 10 ~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~idei 85 (640)
+..+..++ ..+++++|+||||||||++++++++.++.+++.+++..+...+.+.....++.+|. .+|++||+||+
T Consensus 44 ~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 122 (297)
T 3b9p_A 44 PELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122 (297)
T ss_dssp GGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred HHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccH
Confidence 34444433 34678999999999999999999999999999999988877777766666666665 57899999999
Q ss_pred hhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHH
Q psy10020 86 TIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVL 165 (640)
Q Consensus 86 d~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (640)
|.+...+..... ... ....+
T Consensus 123 d~l~~~~~~~~~---------------------~~~----------------------------------~~~~~----- 142 (297)
T 3b9p_A 123 DSLLSERSSSEH---------------------EAS----------------------------------RRLKT----- 142 (297)
T ss_dssp GGTSBCC--------------------------CCS----------------------------------HHHHH-----
T ss_pred HHhccccccCcc---------------------hHH----------------------------------HHHHH-----
Confidence 999876651110 000 22334
Q ss_pred hhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHHHHhhhh
Q psy10020 166 KIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETILLKNFA 241 (640)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~l~~~~~ 241 (640)
.||..++++... .....++| |+|||+++.+|++++| .+++++|+.+.+..++ +.+.
T Consensus 143 -----------------~ll~~l~~~~~~-~~~~~v~v-i~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il-~~~~ 202 (297)
T 3b9p_A 143 -----------------EFLVEFDGLPGN-PDGDRIVV-LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLL-NRLL 202 (297)
T ss_dssp -----------------HHHHHHHHCC-------CEEE-EEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHH-HHHH
T ss_pred -----------------HHHHHHhccccc-CCCCcEEE-EeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHH-HHHH
Confidence 566777766540 01256888 9999999999999988 7899999966666665 3332
Q ss_pred hhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccC-----------cc
Q psy10020 242 HQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLE-----------KE 310 (640)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~-----------~~ 310 (640)
.. ....+ ++.++..++..|.||+|+++..+|+ ++++.+.|+.. ..
T Consensus 203 ~~----------------~~~~~-~~~~~~~la~~~~g~~~~~l~~l~~-------~a~~~a~r~~~~~~~~~~~~~~~~ 258 (297)
T 3b9p_A 203 QK----------------QGSPL-DTEALRRLAKITDGYSGSDLTALAK-------DAALEPIRELNVEQVKCLDISAMR 258 (297)
T ss_dssp GG----------------GSCCS-CHHHHHHHHHHTTTCCHHHHHHHHH-------HHTTHHHHTCC--------CCCCC
T ss_pred Hh----------------cCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHHHhhhhcccccccccC
Confidence 20 00111 3457889999999999999999999 77776666542 12
Q ss_pred cccccccchhhhhhccCCCC
Q psy10020 311 VMLRKKLEEEYSIELGSPID 330 (640)
Q Consensus 311 ii~~~di~~~~ai~~~~~g~ 330 (640)
.|+.+|| ..|+..+.+..
T Consensus 259 ~i~~~d~--~~a~~~~~~s~ 276 (297)
T 3b9p_A 259 AITEQDF--HSSLKRIRRSV 276 (297)
T ss_dssp CCCHHHH--HHHTTSCCCSS
T ss_pred CcCHHHH--HHHHHHcCCCC
Confidence 3488888 88887766553
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.78 E-value=4.7e-19 Score=191.44 Aligned_cols=212 Identities=23% Similarity=0.291 Sum_probs=143.2
Q ss_pred cccccccCcccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh----hcccccccchh
Q psy10020 10 PEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFLHEI 85 (640)
Q Consensus 10 ~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~idei 85 (640)
+..+..++ ..++++||+||||||||+++++||..++.+++.+++..+...+.+.....++.+|. .+|++|||||+
T Consensus 138 ~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEi 216 (389)
T 3vfd_A 138 PELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQV 216 (389)
T ss_dssp TTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETG
T ss_pred HHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECc
Confidence 33444443 34678999999999999999999999999999999999888777777777777775 66799999999
Q ss_pred hhhccchhhhhhhhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHH
Q psy10020 86 TIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVL 165 (640)
Q Consensus 86 d~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (640)
|.+...+..... ... ..+.+
T Consensus 217 d~l~~~~~~~~~---------------------~~~----------------------------------~~~~~----- 236 (389)
T 3vfd_A 217 DSLLCERREGEH---------------------DAS----------------------------------RRLKT----- 236 (389)
T ss_dssp GGGC-----------------------------CTH----------------------------------HHHHH-----
T ss_pred hhhcccCCCccc---------------------hHH----------------------------------HHHHH-----
Confidence 999866541110 001 23344
Q ss_pred hhhHHhhhhccchhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh----HhccCcccHHHHHHHHHhhhh
Q psy10020 166 KIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR----KQLIDSVNREIAETILLKNFA 241 (640)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r----~i~i~~P~~~i~~~~l~~~~~ 241 (640)
.|+..++++.. .....|+| |+|||+++.||++++| .++|++|+.+.+..++ +.+.
T Consensus 237 -----------------~ll~~l~~~~~--~~~~~v~v-I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il-~~~~ 295 (389)
T 3vfd_A 237 -----------------EFLIEFDGVQS--AGDDRVLV-MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLL-KNLL 295 (389)
T ss_dssp -----------------HHHHHHHHHC-------CEEE-EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHH-HHHH
T ss_pred -----------------HHHHHhhcccc--cCCCCEEE-EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHH-HHHH
Confidence 67777777654 12456888 9999999999999998 6889999966666666 3333
Q ss_pred hhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccC-----------cc
Q psy10020 242 HQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLE-----------KE 310 (640)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~-----------~~ 310 (640)
.. ....+ .+.++..|+..+.||+++++..+++ .++....++.. ..
T Consensus 296 ~~----------------~~~~l-~~~~~~~la~~~~g~~~~~l~~L~~-------~a~~~~~rel~~~~~~~~~~~~~~ 351 (389)
T 3vfd_A 296 CK----------------QGSPL-TQKELAQLARMTDGYSGSDLTALAK-------DAALGPIRELKPEQVKNMSASEMR 351 (389)
T ss_dssp TT----------------SCCCS-CHHHHHHHHHHTTTCCHHHHHHHHH-------HHTTHHHHTSCCC---CCSSSCCC
T ss_pred Hh----------------cCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHhhhhhhhhccchhhcC
Confidence 20 01111 2457889999999999999999999 77766666522 12
Q ss_pred cccccccchhhhhhccCCC
Q psy10020 311 VMLRKKLEEEYSIELGSPI 329 (640)
Q Consensus 311 ii~~~di~~~~ai~~~~~g 329 (640)
.|+.+|| ..++..+.+.
T Consensus 352 ~i~~~d~--~~al~~~~~s 368 (389)
T 3vfd_A 352 NIRLSDF--TESLKKIKRS 368 (389)
T ss_dssp CCCHHHH--HHHHHHCCCS
T ss_pred CcCHHHH--HHHHHHcCCC
Confidence 3377777 6777665444
No 32
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.76 E-value=6.4e-20 Score=203.39 Aligned_cols=272 Identities=17% Similarity=0.184 Sum_probs=186.5
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccch
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQ 359 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~ 359 (640)
+++++|.+.+.|.++.+++..|..++...+++++++++ +++...........+.-.+++++|+|.+|+||......
T Consensus 95 i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEI---d~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~v- 170 (499)
T 2dhr_A 95 ASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEI---DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI- 170 (499)
T ss_dssp EEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECG---GGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCC-
T ss_pred EehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehH---HHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccE-
Confidence 45667777777888888888888888777888899999 44432211100001122246778999999999754433
Q ss_pred hccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEe---ccc---c
Q psy10020 360 VAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVL---SSL---L 433 (640)
Q Consensus 360 vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~---g~~---t 433 (640)
++..++|+++.+|+++++|+ +|+..+.+.+|+. ..|..++..+...+ ...+++.+ ... .
T Consensus 171 ---------iviAatn~p~~LD~aLlr~g-Rfdr~i~i~~Pd~---~~R~~IL~~~~~~~--~l~~dv~l~~lA~~t~G~ 235 (499)
T 2dhr_A 171 ---------VVMAATNRPDILDPALLRPG-RFDRQIAIDAPDV---KGREQILRIHARGK--PLAEDVDLALLAKRTPGF 235 (499)
T ss_dssp ---------EEEECCSCGGGSCTTTSSTT-SSCCEEECCCCCH---HHHHHHHHHTTSSS--CCCCSSTTHHHHTTSCSC
T ss_pred ---------EEEEecCChhhcCccccccc-ccceEEecCCCCH---HHHHHHHHHHHhcC--CCChHHHHHHHHHhcCCC
Confidence 44555678888999999986 5555555555542 23444544332111 11222212 223 3
Q ss_pred chhhhhHHHHHHHHHHHhchhhhcccCCCCccc-ceEEEeecCccccCccccCcchhhccchhHHHHHHHhHHhhhhhCC
Q psy10020 434 TVNKFASLVCRQVAFHESGHALVGWLLPHTDAL-LKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLP 512 (640)
Q Consensus 434 tGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v-~kvtI~prg~~a~G~t~~~p~e~~~~~~~~~a~he~ghal~~~~~~ 512 (640)
+|+++ .|.++.+|+.+.......+.+.|++.+ .++..++.... ....+++ ++.++|||+||++++++++
T Consensus 236 ~gadL-~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~----~~~~~~e-----~~~~a~~e~g~av~~~~l~ 305 (499)
T 2dhr_A 236 VGADL-ENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKS----LVLSPRD-----RRITAYHEAGHALAAHFLE 305 (499)
T ss_dssp CHHHH-HHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSC----CCCCTTH-----HHHHHHHHHHHHHHHCCSS
T ss_pred CHHHH-HHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhccccccc----chhhHHH-----HhhhHHHHHHHHHHHhhcC
Confidence 45777 688888888877655455666666655 44433322110 1222333 5689999999999999999
Q ss_pred CCCcceeEeeecCCCCcccceeeccc--cccccChHhhhcchHHhhhcccCC------------cchHHhhHHHHHHHHH
Q psy10020 513 HTDALLKVTIVPRTSLALGFAQYTPS--EQKLYNKEETLDPKKEMTVNREQP------------PSHDKKKRKCLTEISV 578 (640)
Q Consensus 513 ~~~~v~k~TiipRg~~alG~~~~~p~--~~~~~t~~~~~~~i~~~~~~r~~~------------~~~~~~~r~~l~~l~~ 578 (640)
+.++|+|+||+||+ .++||++ |+ +.+++|+.+++++|.+++|||++| +++..+++.+..+|++
T Consensus 306 ~~~~v~~~~i~pr~-~~~g~~~--p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~ 382 (499)
T 2dhr_A 306 HADGVHKVTIVPRG-RALGFMM--PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITE 382 (499)
T ss_dssp SCCCCCCEESCCSS-CTTCSSH--HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHHHTT
T ss_pred CCCeeeEEEeecCC-CcCcccc--cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999 5999999 65 557899999999999999999777 7888889999999999
Q ss_pred HhHhH
Q psy10020 579 TTMVL 583 (640)
Q Consensus 579 ~ll~~ 583 (640)
|+|..
T Consensus 383 ~gm~~ 387 (499)
T 2dhr_A 383 WGMHP 387 (499)
T ss_dssp SCCCS
T ss_pred hCCCC
Confidence 99964
No 33
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=99.66 E-value=2.4e-17 Score=164.63 Aligned_cols=89 Identities=29% Similarity=0.449 Sum_probs=67.8
Q ss_pred hhHHHHHHHhHHhhhhhCCCCCcceeEeeecCCCCcccceeeccccc-cccChHhhhcchHHhhhcccCC----------
Q psy10020 494 KEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQ-KLYNKEETLDPKKEMTVNREQP---------- 562 (640)
Q Consensus 494 ~~~~a~he~ghal~~~~~~~~~~v~k~TiipRg~~alG~~~~~p~~~-~~~t~~~~~~~i~~~~~~r~~~---------- 562 (640)
++.+||||+|||++++++++++||+||||+|||+ ++|||++.|+++ +++|+.+++++|+++||||++|
T Consensus 16 k~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~-alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGRaAEelifG~g~vt 94 (238)
T 2di4_A 16 KEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGM-ALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGIT 94 (238)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCC-cceEEEeCCcccccccCHHHHHHHHHHHHhHHHHHHHHhCCCCcc
Confidence 7789999999999999999999999999999995 999999999865 6999999999999999999887
Q ss_pred ----cchHHhhHHHHHHHHHHhHhH
Q psy10020 563 ----PSHDKKKRKCLTEISVTTMVL 583 (640)
Q Consensus 563 ----~~~~~~~r~~l~~l~~~ll~~ 583 (640)
+++..++..+..+|++|+|..
T Consensus 95 tGA~~Dl~~AT~iAr~MV~~~GMs~ 119 (238)
T 2di4_A 95 TGAENDLQRATDLAYRMVSMWGMSD 119 (238)
T ss_dssp GGGHHHHHHHHHHHHHHHHTSCCCT
T ss_pred cChHhHHHHHHHHHHHHHHHhCCCC
Confidence 566677999999999999964
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.55 E-value=1.5e-16 Score=175.35 Aligned_cols=76 Identities=32% Similarity=0.336 Sum_probs=64.2
Q ss_pred CcccCCceEEEcCCCchHHHHHHHHHhccC--CCeEEecCchhhhhhccchhhhHhhhhh-------hcccccccchhhh
Q psy10020 17 GAKVPKGALLLGPPGCGKTLLAKAVATEAN--VPFLSMNGSEFIEMIGGLGAARVRTEVV-------FLHCRVFLHEITI 87 (640)
Q Consensus 17 ~l~~~~GiLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~~~l~~~~~~~~~~~l~~~f~-------~~p~il~ideid~ 87 (640)
+...++|+||+||||||||++++++|..++ .+++.+++..+...+.+..+. ++..|. .+|+++|+||+|.
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTE 137 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhh
Confidence 334567899999999999999999999888 899999999998888887776 677776 4589999999999
Q ss_pred hccchh
Q psy10020 88 FDLETK 93 (640)
Q Consensus 88 l~~~r~ 93 (640)
+++.+.
T Consensus 138 l~~~r~ 143 (456)
T 2c9o_A 138 LTPCET 143 (456)
T ss_dssp EEEC--
T ss_pred cccccC
Confidence 998876
No 35
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.41 E-value=1.5e-13 Score=149.62 Aligned_cols=124 Identities=25% Similarity=0.261 Sum_probs=57.1
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhh-hhccc-hhhhHhhhhhhcccccccchhhhhccchhhhhh
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE-MIGGL-GAARVRTEVVFLHCRVFLHEITIFDLETKIIEN 97 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~-~~~~~-~~~~l~~~f~~~p~il~ideid~l~~~r~~~~~ 97 (640)
.+++++|+||||||||+++++||..++.+++.+++..+.. .|.+. .+..++.+|..+...+++||++.+.....
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~---- 124 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAE---- 124 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccch----
Confidence 3577999999999999999999999999999999988776 47774 67778888887666778888876542211
Q ss_pred hhhhhHHHHHhhhhhhhcccchHHHHHHHHHHhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhHHHhhhHHhhhhccc
Q psy10020 98 IFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKEL 177 (640)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (640)
+... .++++
T Consensus 125 --------------------~~~e----------------------------------~rvl~----------------- 133 (444)
T 1g41_A 125 --------------------DVAE----------------------------------ERILD----------------- 133 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------hhHH----------------------------------HHHHH-----------------
Confidence 0011 56777
Q ss_pred hhhhhhHhhhcccchhhhccccceeEEEeeccCCCcccHHHHh------HhccCcccH
Q psy10020 178 DLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLAR------KQLIDSVNR 229 (640)
Q Consensus 178 ~~~~~~lL~~ld~~~~~~~~~~~viv~I~aTn~~~~lD~al~r------~i~i~~P~~ 229 (640)
.||.+||++.. ...| + .++||+++.||+||+| .|+|++|+.
T Consensus 134 -----~LL~~~dg~~~----~~~v-~-a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~ 180 (444)
T 1g41_A 134 -----ALLPPAKNQWG----EVEN-H-DSHSSTRQAFRKKLREGQLDDKEIEIDVSAG 180 (444)
T ss_dssp ----------------------------------------------------------
T ss_pred -----HHHHHhhcccc----cccc-c-cccccCHHHHHHHHHcCCCcceEEEEcCCCC
Confidence 89999999877 4444 3 3449999999999998 899999994
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.40 E-value=2.8e-13 Score=152.39 Aligned_cols=80 Identities=26% Similarity=0.301 Sum_probs=49.5
Q ss_pred ccccCcccCC-ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhh---------hhccchhhhHhhhhh---hcccc
Q psy10020 13 YQNLGAKVPK-GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE---------MIGGLGAARVRTEVV---FLHCR 79 (640)
Q Consensus 13 l~~l~l~~~~-GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~---------~~~~~~~~~l~~~f~---~~p~i 79 (640)
+..++..++. .++|+|||||||||++++|++.++.+++.+++..+.. .+.+.....+...|. ....+
T Consensus 99 l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~v 178 (543)
T 3m6a_A 99 VQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPV 178 (543)
T ss_dssp HHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEE
T ss_pred HHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCE
Confidence 3444555533 3779999999999999999999888888887655432 233434444444444 23349
Q ss_pred cccchhhhhccch
Q psy10020 80 VFLHEITIFDLET 92 (640)
Q Consensus 80 l~ideid~l~~~r 92 (640)
+|+||+|.+...+
T Consensus 179 l~lDEid~l~~~~ 191 (543)
T 3m6a_A 179 FLLDEIDKMSSDF 191 (543)
T ss_dssp EEEEESSSCC---
T ss_pred EEEhhhhhhhhhh
Confidence 9999999998544
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.26 E-value=5.6e-12 Score=128.83 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=54.0
Q ss_pred cccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhh-hccchhhhHhhhhh----hcccccccchhhhhccch
Q psy10020 18 AKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM-IGGLGAARVRTEVV----FLHCRVFLHEITIFDLET 92 (640)
Q Consensus 18 l~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~-~~~~~~~~l~~~f~----~~p~il~ideid~l~~~r 92 (640)
...+.+++|+||||||||+++++++...+.+++.+++.+.... ........++..|. ..+++|++||+|.+...+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 140 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV 140 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCB
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccC
Confidence 4456679999999999999999999999999998876542211 11111233444444 457999999999997554
Q ss_pred h
Q psy10020 93 K 93 (640)
Q Consensus 93 ~ 93 (640)
.
T Consensus 141 ~ 141 (272)
T 1d2n_A 141 P 141 (272)
T ss_dssp T
T ss_pred C
Confidence 3
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.26 E-value=4e-12 Score=131.96 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=57.0
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc-------CCCeEEecCchhhhhhccchhhhHhhhhh-hcccccccchhhhhccchh
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA-------NVPFLSMNGSEFIEMIGGLGAARVRTEVV-FLHCRVFLHEITIFDLETK 93 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~-------~~~~i~v~~~~l~~~~~~~~~~~l~~~f~-~~p~il~ideid~l~~~r~ 93 (640)
+++|+||||||||+++++++..+ ..+++.+++..+...+.+.....+...|. ..+++||+||+|.+...+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 147 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDN 147 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCC
Confidence 48999999999999999999855 34789999888877777766666666665 5678999999999985543
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.22 E-value=2.9e-11 Score=128.57 Aligned_cols=90 Identities=10% Similarity=-0.033 Sum_probs=61.9
Q ss_pred cCCCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhCCCCCccch
Q psy10020 209 LRAYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASN 285 (640)
Q Consensus 209 n~~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t~G~sgadi 285 (640)
|.+..++++|++ .+.|+.|+.+-+..++ +..... ....++ +-.+..++..+.|.+++++
T Consensus 238 ~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il-~~~~~~----------------~~~~~~-~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 238 QSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL-RIRCEE----------------EDVEMS-EDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp EEETTCCHHHHTTEEEEEECCCCHHHHHHHH-HHHHHH----------------TTCCBC-HHHHHHHHHHHHHSCHHHH
T ss_pred CCcccCCHHHHhhccEEEecCCCHHHHHHHH-HHHHHH----------------cCCCCC-HHHHHHHHHHhcCCCHHHH
Confidence 468899999998 7788888865555555 322210 011122 3357889999986788999
Q ss_pred hhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhcc
Q psy10020 286 VNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELG 326 (640)
Q Consensus 286 ~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~ 326 (640)
.+++. +++..+.......| +.+++ ..++...
T Consensus 300 ~~ll~-------~a~~~A~~~~~~~I-t~~~v--~~a~~~~ 330 (368)
T 3uk6_A 300 IQLIT-------AASLVCRKRKGTEV-QVDDI--KRVYSLF 330 (368)
T ss_dssp HHHHH-------HHHHHHHHTTCSSB-CHHHH--HHHHHHS
T ss_pred HHHHH-------HHHHHHHHhCCCCC-CHHHH--HHHHHHh
Confidence 99999 66666666666666 99999 6666643
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.16 E-value=1.5e-10 Score=121.85 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=48.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh--hcccccccchhhhhc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV--FLHCRVFLHEITIFD 89 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--~~p~il~ideid~l~ 89 (640)
+.+++|+||||||||+++++++...+.+++.+++..+. ....+...+. ..++++|+||++.+.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTNLSEGDILFIDEIHRLS 119 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHTCCTTCEEEEETGGGCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHhccCCCEEEEechhhcC
Confidence 35699999999999999999999999999998876543 1112222232 467899999999886
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.15 E-value=1.8e-10 Score=126.29 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=49.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCchhhhhhccchhhh----Hhhhhhhcccccccchhhhhcc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGSEFIEMIGGLGAAR----VRTEVVFLHCRVFLHEITIFDL 90 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~~l~~~~~~~~~~~----l~~~f~~~p~il~ideid~l~~ 90 (640)
+.+++|+||||||||+|+++|++.+ +..++.+++..+...+....... +...+...+.+|++||++.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 4568999999999999999999865 67788888776654332221111 1111112688999999998874
No 42
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.13 E-value=1.9e-10 Score=118.73 Aligned_cols=74 Identities=31% Similarity=0.464 Sum_probs=54.8
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhh-hhccch-hhhHhhhhh---------hcccccccchhhhh
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE-MIGGLG-AARVRTEVV---------FLHCRVFLHEITIF 88 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~-~~~~~~-~~~l~~~f~---------~~p~il~ideid~l 88 (640)
.+.+++|+||||||||+++++++..++.+++.+++..+.. .+.+.. ...++.++. ..++++|+||+|.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 3567999999999999999999999999999998877653 233321 122333332 24789999999999
Q ss_pred ccchh
Q psy10020 89 DLETK 93 (640)
Q Consensus 89 ~~~r~ 93 (640)
.....
T Consensus 129 ~~~~~ 133 (310)
T 1ofh_A 129 CKKGE 133 (310)
T ss_dssp SCCSS
T ss_pred Ccccc
Confidence 86653
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.06 E-value=5.9e-10 Score=118.79 Aligned_cols=74 Identities=26% Similarity=0.380 Sum_probs=57.4
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhh-hhccch-hhhHhhhhh--------hcccccccchhhhhc
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE-MIGGLG-AARVRTEVV--------FLHCRVFLHEITIFD 89 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~-~~~~~~-~~~l~~~f~--------~~p~il~ideid~l~ 89 (640)
.+.+++|+||||||||+++++||..++.+++.+++..+.. .+.|.. ...+...|. ..+++||+||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 3567999999999999999999999999999999887653 244443 333444433 457899999999998
Q ss_pred cchh
Q psy10020 90 LETK 93 (640)
Q Consensus 90 ~~r~ 93 (640)
+.+.
T Consensus 130 ~~~~ 133 (363)
T 3hws_A 130 RKSD 133 (363)
T ss_dssp CCSS
T ss_pred cccc
Confidence 7765
No 44
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.02 E-value=8.4e-11 Score=111.62 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=49.4
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhhh--hhccchhhhHhhhhh-----hccccccc
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFIE--MIGGLGAARVRTEVV-----FLHCRVFL 82 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~~--~~~~~~~~~l~~~f~-----~~p~il~i 82 (640)
.+.+++|+||+|||||++++.++..+ +.+++.+++..+.. .+.+.....+...+. ..++++++
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 34568999999999999999999864 56667776655541 222233333444443 34679999
Q ss_pred chhhhhccch
Q psy10020 83 HEITIFDLET 92 (640)
Q Consensus 83 deid~l~~~r 92 (640)
||++.+...+
T Consensus 122 De~~~l~~~~ 131 (195)
T 1jbk_A 122 DELHTMVGAG 131 (195)
T ss_dssp ETGGGGTT--
T ss_pred eCHHHHhccC
Confidence 9999987544
No 45
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.01 E-value=5.5e-10 Score=118.64 Aligned_cols=37 Identities=35% Similarity=0.436 Sum_probs=30.4
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhcc---------CCCeEEecCch
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEA---------NVPFLSMNGSE 56 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~---------~~~~i~v~~~~ 56 (640)
.+.+++|+||||||||++++.++..+ +..++.+++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 35568999999999999999999866 66777787654
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.00 E-value=1.6e-09 Score=113.40 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=49.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhhHhhhhh---hcccccccchhhhhcc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAARVRTEVV---FLHCRVFLHEITIFDL 90 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~l~~~f~---~~p~il~ideid~l~~ 90 (640)
+.+++|+||||||||+++++++..+ +.+++.+++..+.....+.........|. ..+.+||+||++.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC
Confidence 3569999999999999999999976 78888988877654333222111111111 3478999999998874
No 47
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.98 E-value=4.8e-10 Score=116.83 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=48.2
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh---hcccccccchhhhhc
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV---FLHCRVFLHEITIFD 89 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~---~~p~il~ideid~l~ 89 (640)
.+.+++|+||||||||+++++++..++.+++.+++..+.. ...+...+. ..++++|+||++.+.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANSLEEGDILFIDEIHRLS 103 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTTCCTTCEEEETTTTSCC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHhccCCCEEEEECCcccc
Confidence 3467999999999999999999998888898888765431 112222222 357899999999876
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.98 E-value=1.9e-09 Score=106.55 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=44.4
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhhcc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIFDL 90 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l~~ 90 (640)
..+++|+||||||||+++++++..+ +..++.++...+..... ..+. ....+.++++||++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST----ALLE--GLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG----GGGT--TGGGSSEEEEETGGGGTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH----HHHH--hccCCCEEEEeccccccC
Confidence 4558899999999999999999854 35667777665542211 1111 114578999999998763
No 49
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.98 E-value=1.1e-09 Score=115.42 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=52.0
Q ss_pred ccccccccccCcccC---------CceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh--h
Q psy10020 7 LKRPEYYQNLGAKVP---------KGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV--F 75 (640)
Q Consensus 7 l~~~~~l~~l~l~~~---------~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~--~ 75 (640)
++...+++++++.+. ..++|+||||||||||+++||+.++..+...++..+.. ...+...+. .
T Consensus 28 ~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~~~ 101 (334)
T 1in4_A 28 IGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE 101 (334)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHHCC
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHHcc
Confidence 344455555555443 44889999999999999999999888777666654321 111122221 3
Q ss_pred cccccccchhhhhcc
Q psy10020 76 LHCRVFLHEITIFDL 90 (640)
Q Consensus 76 ~p~il~ideid~l~~ 90 (640)
...++|+||++.+.+
T Consensus 102 ~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 102 RGDVLFIDEIHRLNK 116 (334)
T ss_dssp TTCEEEEETGGGCCH
T ss_pred CCCEEEEcchhhcCH
Confidence 457999999998863
No 50
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.92 E-value=3.9e-10 Score=106.83 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=48.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhhhh--hccchhhhHhhhhh-----hcccccccc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFIEM--IGGLGAARVRTEVV-----FLHCRVFLH 83 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~~~--~~~~~~~~l~~~f~-----~~p~il~id 83 (640)
+.+++|+||+|||||++++.++..+ +.+++.++...+... +.+.....+...+. ..+.++++|
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFID 122 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEET
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 4568999999999999999999865 556666665554321 12222233333333 256899999
Q ss_pred hhhhhccch
Q psy10020 84 EITIFDLET 92 (640)
Q Consensus 84 eid~l~~~r 92 (640)
|++.+...+
T Consensus 123 e~~~l~~~~ 131 (187)
T 2p65_A 123 EIHTVVGAG 131 (187)
T ss_dssp TGGGGSSSS
T ss_pred CHHHhcccc
Confidence 999997544
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.92 E-value=5.5e-09 Score=102.53 Aligned_cols=72 Identities=6% Similarity=0.003 Sum_probs=46.8
Q ss_pred cceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHh
Q psy10020 199 ELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQN 275 (640)
Q Consensus 199 ~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~ 275 (640)
..+.+ |.+||++..+++++.+ .+.++.|+.+-+..++ ...... ....+ ++-.+..+++
T Consensus 155 ~~~~~-i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l-~~~~~~----------------~~~~~-~~~~~~~l~~ 215 (250)
T 1njg_A 155 EHVKF-LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL-EHILNE----------------EHIAH-EPRALQLLAR 215 (250)
T ss_dssp TTEEE-EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHH-HHHHHH----------------TTCCB-CHHHHHHHHH
T ss_pred CceEE-EEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHH-HHHHHh----------------cCCCC-CHHHHHHHHH
Confidence 36677 8899999999999887 7888888855555555 222210 01111 1234678899
Q ss_pred hCCCCCccchhhhhh
Q psy10020 276 FLPQTSTASNVNQSH 290 (640)
Q Consensus 276 ~t~G~sgadi~~l~~ 290 (640)
.|.| .+..+.+++.
T Consensus 216 ~~~G-~~~~~~~~~~ 229 (250)
T 1njg_A 216 AAEG-SLRDALSLTD 229 (250)
T ss_dssp HHTT-CHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHH
Confidence 9877 6666666666
No 52
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.91 E-value=2.1e-09 Score=117.90 Aligned_cols=68 Identities=26% Similarity=0.305 Sum_probs=45.5
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHh-hhhhhcccccccchhhhhc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVR-TEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~-~~f~~~p~il~ideid~l~ 89 (640)
.+++|+|||||||||++++|+..++.+++.++................. ..+...+.+||+||++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~ 119 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFN 119 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC
Confidence 4589999999999999999999999888888765432111110000111 1112457899999999885
No 53
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.91 E-value=2.8e-09 Score=111.35 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=46.6
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh-----hcccccccchhhhhc
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV-----FLHCRVFLHEITIFD 89 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~-----~~p~il~ideid~l~ 89 (640)
++..++++||||||||+++++++..++.+++.+++++.... .....+..... ..+.++++||+|.+.
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~---~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKID---FVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHH---HHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHH---HHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 34446788889999999999999999988999987653211 11111222111 256899999999875
No 54
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.87 E-value=3.4e-10 Score=121.43 Aligned_cols=176 Identities=11% Similarity=0.072 Sum_probs=121.1
Q ss_pred HHHHhhCC----CCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhh
Q psy10020 271 MKKQNFLP----QTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSL 346 (640)
Q Consensus 271 ~~LA~~t~----G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL 346 (640)
..+|..+. -++++++...+.|-+.+.++.+|..|++.+|+||++|++ |++...............+.+++|+|
T Consensus 200 kAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEi---Dai~~~R~~~~~~~~~~~~~~l~~lL 276 (405)
T 4b4t_J 200 RAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEI---DSIGSTRVEGSGGGDSEVQRTMLELL 276 (405)
T ss_dssp HHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESS---SCCTTSCSCSSSGGGGHHHHHHHHHH
T ss_pred HHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecc---hhhccCCCCCCCCCcHHHHHHHHHHH
Confidence 34555443 268899999999999999999999999999999999999 55543322222222223346788999
Q ss_pred cccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccce
Q psy10020 347 LTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRK 426 (640)
Q Consensus 347 ~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ 426 (640)
.+||||.....+++ |+ ++|+++.+|++.+||+ +++.-+.+.+|+.. .|.+++..+...+ ..++.
T Consensus 277 ~~lDg~~~~~~V~v--------Ia--ATNrpd~LDpAllRpG-RfD~~I~i~lPd~~---~R~~Il~~~~~~~--~l~~d 340 (405)
T 4b4t_J 277 NQLDGFETSKNIKI--------IM--ATNRLDILDPALLRPG-RIDRKIEFPPPSVA---ARAEILRIHSRKM--NLTRG 340 (405)
T ss_dssp HHHHTTTCCCCEEE--------EE--EESCSSSSCHHHHSTT-SSCCEEECCCCCHH---HHHHHHHHHHTTS--BCCSS
T ss_pred HhhhccCCCCCeEE--------Ee--ccCChhhCCHhHcCCC-cCceEEEcCCcCHH---HHHHHHHHHhcCC--CCCcc
Confidence 99999988776554 44 5589999999999996 77766666666532 4556655443322 12233
Q ss_pred EEec------cccchhhhhHHHHHHHHHHHhchhhhcccCCCCccc
Q psy10020 427 WVLS------SLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL 466 (640)
Q Consensus 427 ii~g------~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v 466 (640)
+.+. ...+||++ .++++.+|+++.++....+.+.|++.+
T Consensus 341 vdl~~lA~~t~G~SGADi-~~l~~eA~~~Air~~~~~vt~~Df~~A 385 (405)
T 4b4t_J 341 INLRKVAEKMNGCSGADV-KGVCTEAGMYALRERRIHVTQEDFELA 385 (405)
T ss_dssp CCHHHHHHHCCSCCHHHH-HHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 3332 34678999 778888887777665555666566554
No 55
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.83 E-value=1.1e-08 Score=99.08 Aligned_cols=65 Identities=28% Similarity=0.359 Sum_probs=41.2
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCchhhhhhccchhhhHhhhh------hhcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGSEFIEMIGGLGAARVRTEV------VFLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~~l~~~~~~~~~~~l~~~f------~~~p~il~ideid~l~ 89 (640)
+++|+||+|+|||++++.++..+ ...++.+++...... ......+.... ...+.++++||++.+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh--HHHHHHHHHHhcccCCCccCceEEEEeChhhcC
Confidence 48999999999999999999854 344666665432211 00111111111 1456899999998875
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.83 E-value=3.9e-09 Score=109.27 Aligned_cols=67 Identities=25% Similarity=0.391 Sum_probs=43.6
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhh-----hhcc-------chh-hhHhhhhh-hcccccccchh
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIE-----MIGG-------LGA-ARVRTEVV-FLHCRVFLHEI 85 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~-----~~~~-------~~~-~~l~~~f~-~~p~il~idei 85 (640)
.++|+||||||||+++++|+..+ +.+++.+++..+.. ...+ ... ..+...+. ...+++|+||+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi 128 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAI 128 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeCh
Confidence 48899999999999999999965 34577777665431 1111 000 11222222 33489999999
Q ss_pred hhhc
Q psy10020 86 TIFD 89 (640)
Q Consensus 86 d~l~ 89 (640)
|.+.
T Consensus 129 ~~l~ 132 (311)
T 4fcw_A 129 EKAH 132 (311)
T ss_dssp GGSC
T ss_pred hhcC
Confidence 8875
No 57
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.83 E-value=7e-09 Score=108.77 Aligned_cols=69 Identities=19% Similarity=0.107 Sum_probs=44.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchh--hhhhccchhh-hHhhh--hhhc---ccccccchhhhhc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF--IEMIGGLGAA-RVRTE--VVFL---HCRVFLHEITIFD 89 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l--~~~~~~~~~~-~l~~~--f~~~---p~il~ideid~l~ 89 (640)
..+++|+||||||||+++++++..++.+++.+++..- .....+.... ..... +... .+++|+||++.+.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~ 122 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSP 122 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCC
Confidence 4569999999999999999999999988888776311 1111111000 00011 1112 3799999999865
No 58
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=7.3e-09 Score=115.72 Aligned_cols=71 Identities=28% Similarity=0.257 Sum_probs=50.4
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchh-------hhHhhhhh---------hcccccccc
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA-------ARVRTEVV---------FLHCRVFLH 83 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~-------~~l~~~f~---------~~p~il~id 83 (640)
.+++++|+||||||||++++++|..++..++.+++.+.......... ..+...|. ..+++|++|
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 45679999999999999999999999999999988765422111000 00112222 356899999
Q ss_pred hhhhhcc
Q psy10020 84 EITIFDL 90 (640)
Q Consensus 84 eid~l~~ 90 (640)
|+|.+..
T Consensus 156 Eid~l~~ 162 (516)
T 1sxj_A 156 EVDGMSG 162 (516)
T ss_dssp SGGGCCT
T ss_pred CCCccch
Confidence 9999874
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.80 E-value=6.4e-09 Score=114.79 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=39.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhhhhhccchhhhHhhhhh----hcccccccc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFLH 83 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~id 83 (640)
..+++|+||||||||+++++||..+ +..++.+++. ..+.|.....++.+|. ..++++|+|
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4568999999999999999999864 5667777665 3344544455555554 457899998
No 60
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.80 E-value=4.2e-09 Score=111.60 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=29.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc------CCCeEEecCc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA------NVPFLSMNGS 55 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~------~~~~i~v~~~ 55 (640)
+..++|+||+|+|||+|++.+++.+ +.+++.+++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 4458899999999999999999866 6677777754
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.79 E-value=4.6e-09 Score=122.66 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=52.4
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhh--hhhccchhhhHhhhhh----hcccccccc
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFI--EMIGGLGAARVRTEVV----FLHCRVFLH 83 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~--~~~~~~~~~~l~~~f~----~~p~il~id 83 (640)
.+.+++|+||||||||+++++++..+ +..++.++...+. ..+.+..+..++.+|. ..++++|||
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ID 285 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEET
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 45569999999999999999999854 4445666655544 2344555666666665 447999999
Q ss_pred hhhhhccchh
Q psy10020 84 EITIFDLETK 93 (640)
Q Consensus 84 eid~l~~~r~ 93 (640)
|++.+.+.+.
T Consensus 286 Ei~~l~~~~~ 295 (758)
T 1r6b_X 286 EIHTIIGAGA 295 (758)
T ss_dssp TTTTTTTSCC
T ss_pred chHHHhhcCC
Confidence 9999986544
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.76 E-value=1.5e-08 Score=106.47 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccC
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
..+++|+||||||||+++++++..++
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34599999999999999999998665
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=3.5e-08 Score=103.74 Aligned_cols=34 Identities=38% Similarity=0.579 Sum_probs=27.0
Q ss_pred ceEEEcCCCchHHHHHHHHHhccC------CCeEEecCch
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEAN------VPFLSMNGSE 56 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~------~~~i~v~~~~ 56 (640)
+++|+||||+|||+++++++..+. ..++.+++.+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 388999999999999999998643 3466666554
No 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.73 E-value=4.7e-09 Score=124.24 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=45.8
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhh--hhhccchhhhHhhhhh-----hcccccccc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFI--EMIGGLGAARVRTEVV-----FLHCRVFLH 83 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~--~~~~~~~~~~l~~~f~-----~~p~il~id 83 (640)
+.+++|+||||||||++++.+|..+ +..++.++...+. ..+.+.....++.+|. ..+++||||
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ID 270 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID 270 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4569999999999999999999865 6678888877765 3445556666666665 257899999
Q ss_pred hhhhhccchh
Q psy10020 84 EITIFDLETK 93 (640)
Q Consensus 84 eid~l~~~r~ 93 (640)
|++.+.....
T Consensus 271 Ei~~l~~~~~ 280 (854)
T 1qvr_A 271 ELHTVVGAGK 280 (854)
T ss_dssp CC--------
T ss_pred cHHHHhccCC
Confidence 9999985543
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.73 E-value=3.3e-08 Score=115.43 Aligned_cols=67 Identities=27% Similarity=0.335 Sum_probs=47.9
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l~ 89 (640)
.++|+||||||||+++++|+..+ +.+++.++++.+...+..........+....++++|+||++.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~ 592 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAH 592 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccC
Confidence 38899999999999999999965 67899999988765443321111112222456899999998764
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.73 E-value=1.1e-08 Score=108.87 Aligned_cols=36 Identities=33% Similarity=0.419 Sum_probs=30.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc-----------CCCeEEecCch
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA-----------NVPFLSMNGSE 56 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~-----------~~~~i~v~~~~ 56 (640)
+.+++|+||||+|||++++.++..+ +..++.+++..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 4568899999999999999999865 77788887554
No 67
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.2e-09 Score=117.83 Aligned_cols=167 Identities=10% Similarity=0.068 Sum_probs=112.5
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccch
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQ 359 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~ 359 (640)
++++++...+.|-+.+.++.+|..|++.+++||+++++ +++.............-...+++|+|.+||||....+++
T Consensus 247 v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEi---Dai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~Vi 323 (437)
T 4b4t_I 247 IVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEI---DAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVK 323 (437)
T ss_dssp EESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEE---SSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEE
T ss_pred EEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehh---hhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEE
Confidence 67899999999999999999999999999999999999 555433222121111222357889999999998877765
Q ss_pred hccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec------ccc
Q psy10020 360 VAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS------SLL 433 (640)
Q Consensus 360 vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g------~~t 433 (640)
| |+ ++|+++.+|+|.+||+ +++.-+.+.+|+. ..|..++..+...+ ..++++.+. ...
T Consensus 324 V--------Ia--ATNrpd~LDpALlRpG-RfD~~I~v~lPd~---~~R~~Il~~~l~~~--~l~~dvdl~~LA~~T~Gf 387 (437)
T 4b4t_I 324 V--------IM--ATNKIETLDPALIRPG-RIDRKILFENPDL---STKKKILGIHTSKM--NLSEDVNLETLVTTKDDL 387 (437)
T ss_dssp E--------EE--EESCSTTCCTTSSCTT-TEEEEECCCCCCH---HHHHHHHHHHHTTS--CBCSCCCHHHHHHHCCSC
T ss_pred E--------EE--eCCChhhcCHHHhcCC-ceeEEEEcCCcCH---HHHHHHHHHHhcCC--CCCCcCCHHHHHHhCCCC
Confidence 5 44 4589999999999996 5554444444442 34556665443322 223444443 346
Q ss_pred chhhhhHHHHHHHHHHHhchhhhcccCCCCccc
Q psy10020 434 TVNKFASLVCRQVAFHESGHALVGWLLPHTDAL 466 (640)
Q Consensus 434 tGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v 466 (640)
+||++ .++++.+|+.+.++....+.+.|++.+
T Consensus 388 SGADI-~~l~~eA~~~Air~~~~~It~eDf~~A 419 (437)
T 4b4t_I 388 SGADI-QAMCTEAGLLALRERRMQVTAEDFKQA 419 (437)
T ss_dssp CHHHH-HHHHHHHHHHHHHTTCSCBCHHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 88999 677777777766654444445455443
No 68
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.72 E-value=1.2e-08 Score=109.23 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=48.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh-hhhccch-hhhHhhhhh--------hcccccccchhhhhcc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI-EMIGGLG-AARVRTEVV--------FLHCRVFLHEITIFDL 90 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~-~~~~~~~-~~~l~~~f~--------~~p~il~ideid~l~~ 90 (640)
+.+++|+||||||||+++++||..++.+++.+++..+. ..+.+.. ...+...+. ..++++|+||++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 151 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR 151 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh
Confidence 45699999999999999999999999999999887654 2233322 222333322 3578999999999986
Q ss_pred chh
Q psy10020 91 ETK 93 (640)
Q Consensus 91 ~r~ 93 (640)
.+.
T Consensus 152 ~~~ 154 (376)
T 1um8_A 152 LSE 154 (376)
T ss_dssp ---
T ss_pred hcC
Confidence 643
No 69
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.69 E-value=6.9e-09 Score=85.65 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=48.4
Q ss_pred cchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCC
Q psy10020 265 PASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSP 328 (640)
Q Consensus 265 ~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~ 328 (640)
+.++||+.||..|+||||+||.++|+ ++++.+.++....| +.+|| ..|+.++..
T Consensus 22 ~~~~dl~~la~~t~G~SGADi~~l~~-------eA~~~a~~~~~~~i-~~~d~--~~Al~~v~~ 75 (78)
T 3kw6_A 22 TRGINLRKIAELMPGASGAEVKGVCT-------EAGMYALRERRVHV-TQEDF--EMAVAKVMQ 75 (78)
T ss_dssp CTTCCHHHHHHTCTTCCHHHHHHHHH-------HHHHHHHHTTCSEE-CHHHH--HHHHHHHHC
T ss_pred CCccCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHhCCCCC-CHHHH--HHHHHHHHh
Confidence 46899999999999999999999999 99999999988777 99999 888887643
No 70
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.67 E-value=2.9e-08 Score=91.58 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=45.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhhHhhhhh-hcccccccchhhhhc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAARVRTEVV-FLHCRVFLHEITIFD 89 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~l~~~f~-~~p~il~ideid~l~ 89 (640)
+..++|+||||||||+++++|+... +.+++ +++..+... ......+. ...+++|+||+|.+.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~~g~l~ldei~~l~ 89 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQGGTLVLSHPEHLT 89 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHTTSCEEEECGGGSC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcCCcEEEEcChHHCC
Confidence 4459999999999999999999865 56788 887765432 11222232 456899999999876
No 71
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.66 E-value=1.1e-08 Score=86.66 Aligned_cols=62 Identities=8% Similarity=-0.069 Sum_probs=50.7
Q ss_pred cchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccch
Q psy10020 265 PASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHR 336 (640)
Q Consensus 265 ~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~ 336 (640)
+.++|++.||+.|+|||||||.++|+ ++++.+.++....| +.+|| +.|+.++..+..+++..
T Consensus 20 ~~dvdl~~lA~~t~G~SGADl~~l~~-------eAa~~a~r~~~~~i-~~~df--~~Al~~v~~~~~~~~~~ 81 (88)
T 3vlf_B 20 ERGIRWELISRLCPNSTGAELRSVCT-------EAGMFAIRARRKVA-TEKDF--LKAVDKVISGYKKFSST 81 (88)
T ss_dssp CSCCCHHHHHHTCSSCCHHHHHHHHH-------HHHHHHHHHSCSSB-CHHHH--HHHHHHHTC--------
T ss_pred CCccCHHHHHHHcCCCcHHHHHHHHH-------HHHHHHHHhccccC-CHHHH--HHHHHHHhcCcccccch
Confidence 46899999999999999999999999 99999999988777 99999 99999999998877643
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.66 E-value=4.9e-08 Score=103.80 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=27.7
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc----CCCeEEecCch
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA----NVPFLSMNGSE 56 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~----~~~~i~v~~~~ 56 (640)
.++|+||||+|||++++.+++.+ +..++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 58899999999999999999866 45667777543
No 73
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=3.1e-09 Score=115.51 Aligned_cols=176 Identities=11% Similarity=-0.020 Sum_probs=118.4
Q ss_pred HHHHhhCC----CCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhh
Q psy10020 271 MKKQNFLP----QTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSL 346 (640)
Q Consensus 271 ~~LA~~t~----G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL 346 (640)
..+|..+. -++++++...+.|.+.+.++.+|..|+..+|+||+++++ +++...............+.+++|+|
T Consensus 233 kAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEi---Dal~~~R~~~~~~~~~~~~~~~~~lL 309 (434)
T 4b4t_M 233 RACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDEL---DAIGTKRFDSEKSGDREVQRTMLELL 309 (434)
T ss_dssp HHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECT---HHHHCCCSSGGGGTTHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecch---hhhhhccCCCCCCCchHHHHHHHHHH
Confidence 35555543 268999999999999999999999999999999999999 66543332222211222345788999
Q ss_pred cccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccce
Q psy10020 347 LTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRK 426 (640)
Q Consensus 347 ~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ 426 (640)
.+||||....+++| ..++|+++.+|++.+||+ +++.-+.+.+|+. ..|..++..+...+ ...++
T Consensus 310 ~~ldg~~~~~~ViV----------IaaTNrp~~LD~AllRpG-RfD~~I~i~lPd~---~~R~~Il~~~~~~~--~~~~d 373 (434)
T 4b4t_M 310 NQLDGFSSDDRVKV----------LAATNRVDVLDPALLRSG-RLDRKIEFPLPSE---DSRAQILQIHSRKM--TTDDD 373 (434)
T ss_dssp HHHTTSCSSCSSEE----------EEECSSCCCCCTTTCSTT-SEEEEEECCCCCH---HHHHHHHHHHHHHS--CBCSC
T ss_pred HHhhccCCCCCEEE----------EEeCCCchhcCHhHhcCC-ceeEEEEeCCcCH---HHHHHHHHHHhcCC--CCCCc
Confidence 99999988776544 445589999999999997 5555555555543 24555555443322 12233
Q ss_pred EEec------cccchhhhhHHHHHHHHHHHhchhhhcccCCCCccc
Q psy10020 427 WVLS------SLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL 466 (640)
Q Consensus 427 ii~g------~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v 466 (640)
+.+. ...+||++ .++++.+|+.+.++....+.+.|+..+
T Consensus 374 vdl~~lA~~t~G~sGADi-~~l~~eA~~~a~r~~~~~i~~~Df~~A 418 (434)
T 4b4t_M 374 INWQELARSTDEFNGAQL-KAVTVEAGMIALRNGQSSVKHEDFVEG 418 (434)
T ss_dssp CCHHHHHHHCSSCCHHHH-HHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred CCHHHHHHhCCCCCHHHH-HHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 3332 34678998 677777777776655555555555544
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.65 E-value=8.6e-08 Score=106.28 Aligned_cols=26 Identities=35% Similarity=0.660 Sum_probs=23.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccC
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
..+++|+||||||||+++++|+..++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 34599999999999999999999764
No 75
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.65 E-value=7.8e-09 Score=87.05 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=49.3
Q ss_pred cchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCC
Q psy10020 265 PASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPI 329 (640)
Q Consensus 265 ~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g 329 (640)
+.++||+.||+.|+|||||||.++|+ ++++.+.++....| +.+|| +.|+.++.++
T Consensus 30 ~~dvdl~~LA~~T~G~SGADL~~l~~-------eAa~~alr~~~~~I-~~~df--~~Al~~v~p~ 84 (86)
T 2krk_A 30 TRGINLRKIAELMPGASGAEVKGVCT-------EAGMYALRERRVHV-TQEDF--EMAVAKVMQK 84 (86)
T ss_dssp CTTCCCHHHHHTCSSCCHHHHHHHHH-------HHHHHHHHTTCSEE-CHHHH--HHHHHHHHCC
T ss_pred CcccCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHHcCCCC-CHHHH--HHHHHHHccC
Confidence 45899999999999999999999999 99999999987777 99999 9998887654
No 76
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=4.5e-09 Score=114.29 Aligned_cols=167 Identities=10% Similarity=0.032 Sum_probs=114.7
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccch
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQ 359 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~ 359 (640)
++++++...+.|.+.+.++.+|..|+..+++||+++++ +++...............+.+++|+|.+||+|.....++
T Consensus 274 vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEi---Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~Vi 350 (467)
T 4b4t_H 274 VIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEI---DAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 350 (467)
T ss_dssp EEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECC---TTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEE
T ss_pred EEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeeccc---ccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEE
Confidence 67899999999999999999999999999999999999 555433322222222333467889999999998877665
Q ss_pred hccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec------ccc
Q psy10020 360 VAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS------SLL 433 (640)
Q Consensus 360 vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g------~~t 433 (640)
+ |+ ++|+++.+|++.+||+ +|+.-+.+.+|+. ..|..++..+...+ ...+.+.+. ...
T Consensus 351 V--------Ia--ATNrpd~LDpALlRpG-RFD~~I~i~lPd~---~~R~~Ilk~~l~~~--~l~~dvdl~~LA~~T~Gf 414 (467)
T 4b4t_H 351 V--------MF--ATNRPNTLDPALLRPG-RIDRKVEFSLPDL---EGRANIFRIHSKSM--SVERGIRWELISRLCPNS 414 (467)
T ss_dssp E--------EE--ECSCTTSBCHHHHSTT-TCCEEECCCCCCH---HHHHHHHHHHHTTS--CBCSSCCHHHHHHHCCSC
T ss_pred E--------Ee--CCCCcccCChhhhccc-cccEEEEeCCcCH---HHHHHHHHHHhcCC--CCCCCCCHHHHHHHCCCC
Confidence 4 44 4689999999999996 6665555555543 24555655443322 122333332 346
Q ss_pred chhhhhHHHHHHHHHHHhchhhhcccCCCCccc
Q psy10020 434 TVNKFASLVCRQVAFHESGHALVGWLLPHTDAL 466 (640)
Q Consensus 434 tGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v 466 (640)
+||++ .++++.+|+++.++....+.+.|++.+
T Consensus 415 SGADI-~~l~~eAa~~Air~~~~~it~~Df~~A 446 (467)
T 4b4t_H 415 TGAEL-RSVCTEAGMFAIRARRKVATEKDFLKA 446 (467)
T ss_dssp CHHHH-HHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 78898 677777777776655555555556554
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.61 E-value=7.4e-08 Score=112.53 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=40.8
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhhhhhccchhhhHhhhhh----hcccccccc
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFIEMIGGLGAARVRTEVV----FLHCRVFLH 83 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~~~~~~~~~~~l~~~f~----~~p~il~id 83 (640)
...++||+||||||||+++++||..+ +..++.++. ...+.|..+.+++.+|. ..+++||+|
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD 274 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc
Confidence 34569999999999999999999865 566776665 23345555666666665 557899999
No 78
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=5.8e-09 Score=113.23 Aligned_cols=177 Identities=13% Similarity=0.109 Sum_probs=116.3
Q ss_pred HHHHhhCC----CCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhh
Q psy10020 271 MKKQNFLP----QTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSL 346 (640)
Q Consensus 271 ~~LA~~t~----G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL 346 (640)
..+|..+. -++++++...+.|-+...++.+|..|+..+++|++++++ +++.............-.+.+++|+|
T Consensus 224 kAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEi---D~i~~~R~~~~~~~~~~~~r~l~~lL 300 (428)
T 4b4t_K 224 KAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEV---DSIATKRFDAQTGSDREVQRILIELL 300 (428)
T ss_dssp HHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECT---HHHHCSCSSSCSCCCCHHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhh---hhhhccccCCCCCCChHHHHHHHHHH
Confidence 35555443 367889999999999999999999999999999999999 66554432222222222345778999
Q ss_pred cccccccccccchhccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccce
Q psy10020 347 LTVNKFASLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRK 426 (640)
Q Consensus 347 ~~~d~f~~~~~~~vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ 426 (640)
.+||||....+++| |+ ++|+++.+|++++||+ +++ ....+|.-+....|..++..+...+ ....+
T Consensus 301 ~~ldg~~~~~~v~v--------I~--aTN~~~~LD~AllRpG-Rfd--~~I~~p~lPd~~~R~~Il~~~~~~~--~l~~~ 365 (428)
T 4b4t_K 301 TQMDGFDQSTNVKV--------IM--ATNRADTLDPALLRPG-RLD--RKIEFPSLRDRRERRLIFGTIASKM--SLAPE 365 (428)
T ss_dssp HHHHHSCSSCSEEE--------EE--EESCSSSCCHHHHSSS-SEE--EEEECCSSCCHHHHHHHHHHHHHSS--CBCTT
T ss_pred HHhhCCCCCCCEEE--------EE--ecCChhhcChhhhcCC-cce--EEEEcCCCCCHHHHHHHHHHHhcCC--CCCcc
Confidence 99999988776544 44 4589999999999996 433 3344443233334566665544322 12233
Q ss_pred EEec------cccchhhhhHHHHHHHHHHHhchhhhcccCCCCccc
Q psy10020 427 WVLS------SLLTVNKFASLVCRQVAFHESGHALVGWLLPHTDAL 466 (640)
Q Consensus 427 ii~g------~~ttGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~v 466 (640)
+.+. ...+||++ .++++.+|+++.++....+.+.|++.+
T Consensus 366 ~dl~~lA~~t~G~sgadi-~~l~~eA~~~a~r~~~~~i~~~d~~~A 410 (428)
T 4b4t_K 366 ADLDSLIIRNDSLSGAVI-AAIMQEAGLRAVRKNRYVILQSDLEEA 410 (428)
T ss_dssp CCHHHHHHHTTTCCHHHH-HHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cCHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 3332 34678898 677777777776655444555555544
No 79
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=9.4e-08 Score=98.71 Aligned_cols=37 Identities=8% Similarity=-0.077 Sum_probs=29.6
Q ss_pred cceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 199 ELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 199 ~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
..+++ |++||.+..+++++.+ .+.|+.|+.+.+..++
T Consensus 131 ~~~~~-i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 170 (319)
T 2chq_A 131 KSCRF-ILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRL 170 (319)
T ss_dssp SSEEE-EEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHH
T ss_pred CCCeE-EEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHH
Confidence 46677 8899999999999988 7888888855555555
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.59 E-value=7.3e-08 Score=112.51 Aligned_cols=67 Identities=25% Similarity=0.422 Sum_probs=47.5
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhh------------hccchhh-hHhhhhh-hcccccccchhhhh
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM------------IGGLGAA-RVRTEVV-FLHCRVFLHEITIF 88 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~------------~~~~~~~-~l~~~f~-~~p~il~ideid~l 88 (640)
.++|+||||||||+++++++..++.+++.++++.+... +.+.... .+...+. ..++++|+||++.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 38899999999999999999998888999988766431 2221111 1222223 44689999999976
Q ss_pred c
Q psy10020 89 D 89 (640)
Q Consensus 89 ~ 89 (640)
.
T Consensus 570 ~ 570 (758)
T 1r6b_X 570 H 570 (758)
T ss_dssp C
T ss_pred C
Confidence 4
No 81
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.58 E-value=7e-08 Score=100.82 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=48.5
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhcc----------CCCeEEecCchhhh----------hh------ccchhhhHhhh
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEA----------NVPFLSMNGSEFIE----------MI------GGLGAARVRTE 72 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~----------~~~~i~v~~~~l~~----------~~------~~~~~~~l~~~ 72 (640)
..+.+++|+||||||||++++.++..+ ...++.++|..+.+ .. .+.....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 345668999999999999999999865 23467777755321 11 11223344555
Q ss_pred hh------hcccccccchhhhhc
Q psy10020 73 VV------FLHCRVFLHEITIFD 89 (640)
Q Consensus 73 f~------~~p~il~ideid~l~ 89 (640)
|. ..++++++||+|.+.
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHhhhccCCceEEEEecHHHhh
Confidence 54 346899999999987
No 82
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.58 E-value=1.2e-07 Score=98.74 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=46.3
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhh-----ccch-------hhhHhhhhh-hcccccccc
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMI-----GGLG-------AARVRTEVV-FLHCRVFLH 83 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~-----~~~~-------~~~l~~~f~-~~p~il~id 83 (640)
.+.+++|+||||||||+++++|+... +.+++.+++..+.... .|.. .......|. ...+++|+|
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LD 103 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 103 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEe
Confidence 35569999999999999999999843 5678888877653211 1100 001111222 345789999
Q ss_pred hhhhhc
Q psy10020 84 EITIFD 89 (640)
Q Consensus 84 eid~l~ 89 (640)
|++.+.
T Consensus 104 Ei~~l~ 109 (304)
T 1ojl_A 104 EIGDIS 109 (304)
T ss_dssp SCTTCC
T ss_pred ccccCC
Confidence 999886
No 83
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.58 E-value=1.9e-07 Score=94.58 Aligned_cols=69 Identities=28% Similarity=0.343 Sum_probs=45.8
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccC---CCeEEecCchhhhhh-----ccchh-------hhHhhhhh-hcccccccch
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEAN---VPFLSMNGSEFIEMI-----GGLGA-------ARVRTEVV-FLHCRVFLHE 84 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~---~~~i~v~~~~l~~~~-----~~~~~-------~~l~~~f~-~~p~il~ide 84 (640)
+.+++|+||||||||+++++|+.... .+++.+++..+.... .+... ......+. ....++|+||
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDE 108 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEES
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEec
Confidence 45699999999999999999998654 578888877653211 01000 00011122 3357999999
Q ss_pred hhhhc
Q psy10020 85 ITIFD 89 (640)
Q Consensus 85 id~l~ 89 (640)
++.+.
T Consensus 109 i~~l~ 113 (265)
T 2bjv_A 109 LATAP 113 (265)
T ss_dssp GGGSC
T ss_pred hHhcC
Confidence 99876
No 84
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=6.3e-09 Score=113.17 Aligned_cols=166 Identities=11% Similarity=0.097 Sum_probs=109.2
Q ss_pred CCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccch
Q psy10020 280 TSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQ 359 (640)
Q Consensus 280 ~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~ 359 (640)
++++++...+.|-+...++..|..|+...++||+++++ +++..-............+.+++|+|.+||||.....++
T Consensus 246 v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEi---Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vi 322 (437)
T 4b4t_L 246 SPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEV---DAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTK 322 (437)
T ss_dssp EEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECC---CSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSE
T ss_pred EehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecc---cccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeE
Confidence 67889999999999999999999999999999999999 555432222111111222457889999999998876655
Q ss_pred hccccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEec------ccc
Q psy10020 360 VAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVLS------SLL 433 (640)
Q Consensus 360 vA~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~g------~~t 433 (640)
| |+ ++|+++.+|++.+||+ +|+.-+.+.+|+. ..|..++..+...+ ....++.+. ...
T Consensus 323 v--------I~--ATNrp~~LDpAllRpG-RfD~~I~i~lPd~---~~R~~Il~~~~~~~--~~~~d~dl~~lA~~t~G~ 386 (437)
T 4b4t_L 323 I--------IM--ATNRPDTLDPALLRPG-RLDRKVEIPLPNE---AGRLEIFKIHTAKV--KKTGEFDFEAAVKMSDGF 386 (437)
T ss_dssp E--------EE--EESSTTSSCTTTTSTT-SEEEEECCCCCCH---HHHHHHHHHHHHTS--CBCSCCCHHHHHHTCCSC
T ss_pred E--------EE--ecCCchhhCHHHhCCC-ccceeeecCCcCH---HHHHHHHHHHhcCC--CCCcccCHHHHHHhCCCC
Confidence 4 44 4589999999999996 5444444444442 24556655443322 122233332 246
Q ss_pred chhhhhHHHHHHHHHHHhchhhhcccCCCCcc
Q psy10020 434 TVNKFASLVCRQVAFHESGHALVGWLLPHTDA 465 (640)
Q Consensus 434 tGA~l~~n~~~~~A~~e~gha~~~~~~~~~e~ 465 (640)
+||++ .++++.+|+.+.++....+.+.|+..
T Consensus 387 sGADi-~~l~~eA~~~air~~~~~i~~~d~~~ 417 (437)
T 4b4t_L 387 NGADI-RNCATEAGFFAIRDDRDHINPDDLMK 417 (437)
T ss_dssp CHHHH-HHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 78888 67777777766655444444444443
No 85
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.56 E-value=2.6e-07 Score=97.79 Aligned_cols=72 Identities=7% Similarity=0.017 Sum_probs=45.6
Q ss_pred cceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHh
Q psy10020 199 ELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQN 275 (640)
Q Consensus 199 ~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~ 275 (640)
..+++ |++||.+..+++++.+ .+.|+.|+.+.+..++ ...... + ++.+ ++-.+..++.
T Consensus 148 ~~~~~-Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l-~~~~~~--------------~--~~~~-~~~a~~~l~~ 208 (373)
T 1jr3_A 148 EHVKF-LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL-EHILNE--------------E--HIAH-EPRALQLLAR 208 (373)
T ss_dssp SSEEE-EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHH-HHHHHH--------------H--TCCB-CHHHHHHHHH
T ss_pred CceEE-EEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHH-HHHHHH--------------c--CCCC-CHHHHHHHHH
Confidence 46777 8899999999999887 7888888865556666 332220 0 1111 1233668888
Q ss_pred hCCCCCccchhhhhh
Q psy10020 276 FLPQTSTASNVNQSH 290 (640)
Q Consensus 276 ~t~G~sgadi~~l~~ 290 (640)
.+.| +...+.+++.
T Consensus 209 ~~~G-~~r~~~~~l~ 222 (373)
T 1jr3_A 209 AAEG-SLRDALSLTD 222 (373)
T ss_dssp HSSS-CHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHH
Confidence 8866 4445555554
No 86
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.55 E-value=3.6e-08 Score=111.85 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=40.7
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEec----Cchhhhhh-----ccchhhhHhhhhhhcccccccchhhhhcc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMN----GSEFIEMI-----GGLGAARVRTEVVFLHCRVFLHEITIFDL 90 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~----~~~l~~~~-----~~~~~~~l~~~f~~~p~il~ideid~l~~ 90 (640)
++||+||||||||+|+++++..++...+... +..+.... .+........+.....+++|+||+|.+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~ 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCH
Confidence 5999999999999999999997765544321 11111100 01000001111223458999999998763
No 87
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=1.8e-07 Score=98.63 Aligned_cols=36 Identities=8% Similarity=-0.183 Sum_probs=29.0
Q ss_pred ceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 200 LHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 200 ~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
++.+ |.+||+++.+.+++.+ .+.|+.|+.+.+..++
T Consensus 164 ~~~~-Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l 202 (354)
T 1sxj_E 164 NIRL-IMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTIL 202 (354)
T ss_dssp TEEE-EEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred CCEE-EEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHH
Confidence 4566 7789999999999987 8899999966666666
No 88
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.51 E-value=7.3e-08 Score=88.67 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=47.8
Q ss_pred cCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh-hcccccccchhhhhc
Q psy10020 20 VPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV-FLHCRVFLHEITIFD 89 (640)
Q Consensus 20 ~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~-~~p~il~ideid~l~ 89 (640)
.+.+++|+||||||||+++++|+.... +++.+++..+...+ ....+. ..++++|+||++.+.
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~~~~l~lDei~~l~ 88 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAEGGVLYVGDIAQYS 88 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTTTSEEEEEECTTCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCCCCeEEEeChHHCC
Confidence 345699999999999999999998777 89999888765332 222333 346799999999886
No 89
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.50 E-value=1.2e-07 Score=107.83 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=31.3
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++...+++.+++.+..| ++|+|||||||||++++|++.+.
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34455666666666555 88999999999999999999664
No 90
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.47 E-value=5.1e-07 Score=95.00 Aligned_cols=38 Identities=11% Similarity=-0.062 Sum_probs=31.3
Q ss_pred ccceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 198 RELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 198 ~~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
...+++ |.+||+++.+.|++++ .+.|+.|+.+....++
T Consensus 136 ~~~~~~-Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L 176 (334)
T 1a5t_A 136 PAETWF-FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL 176 (334)
T ss_dssp CTTEEE-EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred CCCeEE-EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHH
Confidence 346777 8899999999999998 8899999976666666
No 91
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=2.3e-07 Score=95.90 Aligned_cols=37 Identities=8% Similarity=-0.150 Sum_probs=29.2
Q ss_pred cceeEEEeeccCCCcccHHHHh---HhccCcccHHHHHHHH
Q psy10020 199 ELHIVKMETQLRAYESDKKLAR---KQLIDSVNREIAETIL 236 (640)
Q Consensus 199 ~~viv~I~aTn~~~~lD~al~r---~i~i~~P~~~i~~~~l 236 (640)
..+.+ |.+||.+..+++++.+ .+.|+.|+.+.+..++
T Consensus 136 ~~~~~-il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 175 (323)
T 1sxj_B 136 NSTRF-AFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRL 175 (323)
T ss_dssp TTEEE-EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred CCceE-EEEeCChhhchhHHHhhceEEeecCCCHHHHHHHH
Confidence 35666 7889999999999987 7889988866566666
No 92
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=7.3e-07 Score=92.30 Aligned_cols=65 Identities=31% Similarity=0.357 Sum_probs=40.7
Q ss_pred ceEEEcCCCchHHHHHHHHHhccC-----CCeEEecCchhhhhhccchhhhHhhh-----hh-hcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEAN-----VPFLSMNGSEFIEMIGGLGAARVRTE-----VV-FLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~-----~~~i~v~~~~l~~~~~~~~~~~l~~~-----f~-~~p~il~ideid~l~ 89 (640)
.++|+||+|+|||+++++++..+. ..++.+++.+..... .....+... +. ..+.++++||++.+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 123 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN--VIREKVKEFARTKPIGGASFKIIFLDEADALT 123 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH--TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH--HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC
Confidence 388999999999999999998642 235666655432110 001111111 11 346799999998875
No 93
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.40 E-value=5.1e-07 Score=106.77 Aligned_cols=67 Identities=27% Similarity=0.391 Sum_probs=44.6
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhh------------ccchh-hhHhhhhh-hcccccccchh
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMI------------GGLGA-ARVRTEVV-FLHCRVFLHEI 85 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~------------~~~~~-~~l~~~f~-~~p~il~idei 85 (640)
.++|+||||||||+++++|+..+ +.+++.++++.+.... .|... ..+...+. ..+++||+||+
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi 669 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEI 669 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecc
Confidence 47899999999999999999966 6788999887654211 11111 11222222 44589999999
Q ss_pred hhhc
Q psy10020 86 TIFD 89 (640)
Q Consensus 86 d~l~ 89 (640)
+.+.
T Consensus 670 ~~l~ 673 (854)
T 1qvr_A 670 EKAH 673 (854)
T ss_dssp GGSC
T ss_pred cccC
Confidence 8764
No 94
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=4.8e-07 Score=95.20 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=44.3
Q ss_pred cccccccccCcccCCc----eEEEcCCCchHHHHHHHHHhccCC-----CeEEecCchhhhhhccchhhhHhhhhh----
Q psy10020 8 KRPEYYQNLGAKVPKG----ALLLGPPGCGKTLLAKAVATEANV-----PFLSMNGSEFIEMIGGLGAARVRTEVV---- 74 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G----iLL~Gp~GsGKTtL~r~la~~~~~-----~~i~v~~~~l~~~~~~~~~~~l~~~f~---- 74 (640)
++..+++.+...+..| ++|+|||||||||+++++++.+.. .+..++..+... .......+....+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~--~~~ir~~i~~~~~~~~~ 106 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG--IDVVRNQIKDFASTRQI 106 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS--HHHHHTHHHHHHHBCCS
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc--HHHHHHHHHHHHhhccc
Confidence 3444555544433333 789999999999999999996432 134444432110 0001111222111
Q ss_pred --hcccccccchhhhhc
Q psy10020 75 --FLHCRVFLHEITIFD 89 (640)
Q Consensus 75 --~~p~il~ideid~l~ 89 (640)
..+.++++||+|.+.
T Consensus 107 ~~~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 107 FSKGFKLIILDEADAMT 123 (340)
T ss_dssp SSCSCEEEEETTGGGSC
T ss_pred CCCCceEEEEeCCCCCC
Confidence 225688899998774
No 95
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.36 E-value=1.4e-07 Score=78.74 Aligned_cols=57 Identities=12% Similarity=-0.052 Sum_probs=49.3
Q ss_pred cchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCC
Q psy10020 265 PASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDT 331 (640)
Q Consensus 265 ~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~ 331 (640)
+.++||+.||+.|+|||||||.++|+ ++++.+.++....| +.+|| ..|+.++.++..
T Consensus 20 ~~~vdl~~la~~t~G~SGADi~~l~~-------eA~~~a~~~~~~~i-~~~df--~~Al~~~~ps~~ 76 (83)
T 3aji_B 20 SEEVDLEDYVARPDKISGADINSICQ-------ESGMLAVRENRYIV-LAKDF--EKAYKTVIKKDE 76 (83)
T ss_dssp CTTCCTHHHHTSSCCCCHHHHHHHHH-------HHHHGGGTSCCSSB-CHHHH--HHHHHHHCC---
T ss_pred CcccCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHhccCCc-CHHHH--HHHHHHHccCch
Confidence 46889999999999999999999999 99998888887777 99999 999998887755
No 96
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.35 E-value=2e-07 Score=115.45 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=55.2
Q ss_pred cCCc--eEEEcCCCchHHHHHHHHHhcc---CCCeEEecCch----hh--------hhhccc----hhhhHhhhhh----
Q psy10020 20 VPKG--ALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSE----FI--------EMIGGL----GAARVRTEVV---- 74 (640)
Q Consensus 20 ~~~G--iLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~----l~--------~~~~~~----~~~~l~~~f~---- 74 (640)
+|+| ++|+||||||||+|+++++.+. +.+.+.++... +. +.|.++ .++.++.+|.
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~ 1158 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1158 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh
Confidence 6788 9999999999999999998743 44444443332 22 344455 6777777775
Q ss_pred hcccccccchhhhhccchh
Q psy10020 75 FLHCRVFLHEITIFDLETK 93 (640)
Q Consensus 75 ~~p~il~ideid~l~~~r~ 93 (640)
.+||++|+|+++++.+++.
T Consensus 1159 ~~~~~i~~d~~~al~~~~~ 1177 (1706)
T 3cmw_A 1159 GAVDVIVVDSVAALTPKAE 1177 (1706)
T ss_dssp TCCSEEEESCGGGCCCHHH
T ss_pred cCCeEEEeCchHhcCcccc
Confidence 6799999999999999876
No 97
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.31 E-value=1e-07 Score=79.39 Aligned_cols=57 Identities=12% Similarity=-0.067 Sum_probs=49.2
Q ss_pred cchhcHHHHHhhCCCCCccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCC
Q psy10020 265 PASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDT 331 (640)
Q Consensus 265 ~~~~~~~~LA~~t~G~sgadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~ 331 (640)
+.++||+.||..|+|||||||.++|+ ++++.+.++....| +.+|| ..|+.++..+..
T Consensus 17 ~~~vdl~~lA~~t~G~SGADi~~l~~-------eAa~~ai~~~~~~i-~~~df--~~Al~~v~~~~~ 73 (82)
T 2dzn_B 17 APEADLDSLIIRNDSLSGAVIAAIMQ-------EAGLRAVRKNRYVI-LQSDL--EEAYATQVKTDN 73 (82)
T ss_dssp CTTCCSTTTTTSSCCCCHHHHHHHHH-------HHHHHHHHTTCSEE-CHHHH--HHHHHTTCC---
T ss_pred CCcCCHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHhccCCc-CHHHH--HHHHHHHHcCcC
Confidence 45789999999999999999999999 99999999987777 99999 999998865533
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.28 E-value=7.2e-07 Score=115.07 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=31.5
Q ss_pred cceeEEEeeccCCC-----cccHHHHh---HhccCccc----HHHHHHHH
Q psy10020 199 ELHIVKMETQLRAY-----ESDKKLAR---KQLIDSVN----REIAETIL 236 (640)
Q Consensus 199 ~~viv~I~aTn~~~-----~lD~al~r---~i~i~~P~----~~i~~~~l 236 (640)
..+.+ |||+|.|. .|||+|+| .++|+.|+ ..|+..++
T Consensus 1383 ~~i~l-IaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1383 ERIHI-VGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp ESEEE-EEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHH
T ss_pred cCEEE-EEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHH
Confidence 46788 99999994 89999999 89999999 66777666
No 99
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.27 E-value=4.3e-07 Score=86.36 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=45.0
Q ss_pred cccCcccCCceEEEcCCCchHHHHHHHHHhcc----CCCeEEecCchhhhhhccchhh-hHhhhhh--hcccccccchhh
Q psy10020 14 QNLGAKVPKGALLLGPPGCGKTLLAKAVATEA----NVPFLSMNGSEFIEMIGGLGAA-RVRTEVV--FLHCRVFLHEIT 86 (640)
Q Consensus 14 ~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~----~~~~i~v~~~~l~~~~~~~~~~-~l~~~f~--~~p~il~ideid 86 (640)
+++.+....+++|+||||||||||+++|++.+ +...+.++..++.......... .....+. ..+.++++||++
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~ 110 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLG 110 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCS
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCC
Confidence 33444444568899999999999999999855 4445556555544222110000 0001111 467899999987
Q ss_pred hh
Q psy10020 87 IF 88 (640)
Q Consensus 87 ~l 88 (640)
..
T Consensus 111 ~~ 112 (180)
T 3ec2_A 111 SE 112 (180)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.16 E-value=1.7e-06 Score=80.36 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=41.5
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIFD 89 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l~ 89 (640)
.++|+||+|||||||++++++.. +...+.+++.++... .+...+.++++||++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------GGGGGCSEEEEESTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------HHHhCCCEEEEeCccccC
Confidence 37799999999999999999954 444777776654321 233467899999998754
No 101
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.02 E-value=1.3e-06 Score=92.53 Aligned_cols=52 Identities=21% Similarity=0.486 Sum_probs=44.0
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
++...+++++++++++| +.|+||||||||||+|+|++. +..+.+.+++.++.
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~ 69 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIF 69 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEE
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 45567899999999999 449999999999999999994 44678888888763
No 102
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.01 E-value=1.9e-06 Score=89.71 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=38.5
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCC--eEEecCchhhhhhccchhhhH---hhhhhhcccccccchhhhhccch
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVP--FLSMNGSEFIEMIGGLGAARV---RTEVVFLHCRVFLHEITIFDLET 92 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~--~i~v~~~~l~~~~~~~~~~~l---~~~f~~~p~il~ideid~l~~~r 92 (640)
++|+||||||||+|+..++...+.. ++.+...+....+.......+ ...+...+ ++++|++..+....
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC---
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccccccccc
Confidence 6799999999999999998753333 444411111111111222222 22233334 99999999986443
No 103
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.98 E-value=1.8e-06 Score=87.95 Aligned_cols=52 Identities=15% Similarity=0.354 Sum_probs=44.3
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
++...+++++++++++| +.|+||||||||||+|+|++. +..+.+.+++.++.
T Consensus 21 ~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 76 (266)
T 4g1u_C 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN 76 (266)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETT
T ss_pred eCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECC
Confidence 34567899999999999 449999999999999999994 45788999888764
No 104
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.95 E-value=2e-06 Score=88.03 Aligned_cols=48 Identities=15% Similarity=0.283 Sum_probs=41.1
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
..+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 35899999999999 4599999999999999999954 457788888766
No 105
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=1.2e-05 Score=83.41 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=39.1
Q ss_pred ceEEEcCCCchHHHHHHHHHhcc------CCCeEEecCchhhhhhccchhhhHhhh---hhhc-----ccccccchhhhh
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEA------NVPFLSMNGSEFIEMIGGLGAARVRTE---VVFL-----HCRVFLHEITIF 88 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~------~~~~i~v~~~~l~~~~~~~~~~~l~~~---f~~~-----p~il~ideid~l 88 (640)
..+|+||+|+|||+++++++..+ ...++.++...- ......++.+ +... .-++++||+|.+
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead~l 94 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERM 94 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHHHh
Confidence 47899999999999999998742 345666664320 0111112222 2222 258899999987
Q ss_pred c
Q psy10020 89 D 89 (640)
Q Consensus 89 ~ 89 (640)
.
T Consensus 95 t 95 (305)
T 2gno_A 95 T 95 (305)
T ss_dssp C
T ss_pred C
Confidence 5
No 106
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.89 E-value=3.6e-06 Score=83.52 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=41.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68 (224)
T ss_dssp TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 4457899999999999 4499999999999999999954 457788877665
No 107
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.88 E-value=1.2e-05 Score=86.10 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.1
Q ss_pred ceEE--EcCCCchHHHHHHHHHhcc
Q psy10020 23 GALL--LGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 23 GiLL--~Gp~GsGKTtL~r~la~~~ 45 (640)
.++| +||+|+|||++++.++...
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4778 9999999999999998754
No 108
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.88 E-value=3.5e-06 Score=90.05 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=47.3
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhhhcccccccchhhhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEITIF 88 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~~~p~il~ideid~l 88 (640)
.+++++++.+++| ++|+||||||||||+++|++..+...+.+....- .....+..+ ++.+++++|+++.+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~--~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVA--IDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGG--TTCSCEEETTCCCS
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHh--cchhHHHHHHHHHH
Confidence 4666777777776 6799999999999999999976544433222110 001112222 45577899999987
Q ss_pred cc
Q psy10020 89 DL 90 (640)
Q Consensus 89 ~~ 90 (640)
..
T Consensus 229 ~~ 230 (377)
T 1svm_A 229 GG 230 (377)
T ss_dssp TT
T ss_pred HH
Confidence 74
No 109
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.87 E-value=4.1e-06 Score=84.16 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=42.3
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
...+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID 67 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEEST
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 456899999999999 4599999999999999999954 4678888887653
No 110
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.87 E-value=4.9e-06 Score=84.32 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=42.1
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 4457899999999999 4499999999999999999954 457788887665
No 111
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.87 E-value=3.2e-06 Score=90.26 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=43.9
Q ss_pred ccccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 7 LKRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
++...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN 68 (381)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECC
Confidence 45567899999999999 4499999999999999999944 4678888887764
No 112
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.87 E-value=4.8e-06 Score=84.64 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=41.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI 70 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 4457899999999999 4499999999999999999954 457788887665
No 113
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.86 E-value=5.8e-06 Score=82.65 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=41.0
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
.+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence 5899999999999 4599999999999999999954 4577888887654
No 114
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.84 E-value=5.5e-06 Score=84.24 Aligned_cols=50 Identities=16% Similarity=0.415 Sum_probs=42.1
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++
T Consensus 35 ~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i 88 (263)
T 2olj_A 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINL 88 (263)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEES
T ss_pred CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 4457899999999999 4499999999999999999954 457788888765
No 115
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.84 E-value=3.6e-06 Score=84.81 Aligned_cols=50 Identities=20% Similarity=0.380 Sum_probs=42.1
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
...+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA 74 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 456899999999999 4599999999999999999954 4577888887653
No 116
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.83 E-value=4.8e-06 Score=85.07 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=41.7
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLV 84 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 46899999999999 4599999999999999999954 4578888887664
No 117
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.82 E-value=5.6e-06 Score=82.99 Aligned_cols=51 Identities=27% Similarity=0.407 Sum_probs=42.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT 71 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 4456899999999999 4499999999999999999954 4577888877653
No 118
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.82 E-value=6.6e-06 Score=81.07 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=41.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
+. .+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++
T Consensus 21 ~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 21 DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI 73 (214)
T ss_dssp SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEh
Confidence 44 7899999999999 5599999999999999999954 457788877665
No 119
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.80 E-value=4.7e-06 Score=86.58 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=42.9
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
...+++++++.+++| +.|+||||||||||+++|++.+ ..+.+.+++.++.
T Consensus 66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~ 119 (306)
T 3nh6_A 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS 119 (306)
T ss_dssp TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcc
Confidence 456899999999999 5599999999999999999954 4578888888764
No 120
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.79 E-value=7.8e-06 Score=82.78 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=42.4
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 26 ~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV 80 (256)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 4457899999999999 4499999999999999999954 4577888877653
No 121
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.79 E-value=7.1e-06 Score=84.15 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=41.7
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++
T Consensus 32 ~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMP 85 (279)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCC
T ss_pred CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 4457899999999999 4599999999999999999954 457788877654
No 122
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.76 E-value=9.6e-06 Score=86.08 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=42.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVN 68 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECC
Confidence 4456899999999999 4499999999999999999954 4678888887764
No 123
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.75 E-value=1e-05 Score=85.94 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=42.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT 68 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 4456899999999999 4499999999999999999954 4678888887764
No 124
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.75 E-value=9.3e-06 Score=82.72 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=42.3
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc----CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA----NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~----~~~~i~v~~~~l~ 58 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 31 ~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 4457899999999999 4499999999999999999962 3577888877653
No 125
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.74 E-value=9.8e-06 Score=85.86 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=42.5
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 80 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVT 80 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECC
Confidence 4456899999999999 4499999999999999999954 4677888887664
No 126
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.73 E-value=1.1e-05 Score=85.95 Aligned_cols=51 Identities=24% Similarity=0.384 Sum_probs=42.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 22 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVT 76 (372)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECC
Confidence 4456899999999999 4499999999999999999954 4678888887764
No 127
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.71 E-value=1.2e-05 Score=84.97 Aligned_cols=50 Identities=32% Similarity=0.494 Sum_probs=41.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+.. +++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 12 ~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 12 KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65 (348)
T ss_dssp SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 444 899999999999 4499999999999999999954 4678888887664
No 128
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.71 E-value=1.1e-05 Score=86.08 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=42.8
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVA 68 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEE
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECc
Confidence 4557899999999999 4499999999999999999954 4678888887664
No 129
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.71 E-value=1e-05 Score=85.70 Aligned_cols=51 Identities=24% Similarity=0.362 Sum_probs=42.3
Q ss_pred cccc--cccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 8 KRPE--YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~--~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+... +++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 14 ~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 70 (353)
T 1oxx_K 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVA 70 (353)
T ss_dssp GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEE
T ss_pred CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 4445 899999999999 4499999999999999999954 4678888887653
No 130
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.70 E-value=7.5e-06 Score=87.86 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=41.8
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-CCCeEEecCchhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-NVPFLSMNGSEFI 58 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-~~~~i~v~~~~l~ 58 (640)
...+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWD 85 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTT
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECC
Confidence 457899999999999 4499999999999999999943 4567888887764
No 131
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.69 E-value=1e-05 Score=81.52 Aligned_cols=51 Identities=27% Similarity=0.516 Sum_probs=41.9
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc----cCCCeEEecCchhh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE----ANVPFLSMNGSEFI 58 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~----~~~~~i~v~~~~l~ 58 (640)
+...+++++++++++| +.|+||||||||||+|+|++. +..+.+.+++.++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 4457899999999999 449999999999999999995 24567888776653
No 132
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.68 E-value=9.2e-06 Score=81.92 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=40.0
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccCC-CeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEANV-PFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~-~~i~v~~~~l~ 58 (640)
.+++++++++++| +.|+||||||||||+|+|++.... +.+.+++.++.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~ 64 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLE 64 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGG
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECC
Confidence 6899999999999 459999999999999999995322 78888877653
No 133
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.67 E-value=1.6e-05 Score=80.99 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=40.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
..+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK 71 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 45899999999999 4499999999999999999954 457788877655
No 134
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.66 E-value=1.5e-05 Score=79.74 Aligned_cols=45 Identities=27% Similarity=0.557 Sum_probs=37.2
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecC
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNG 54 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~ 54 (640)
..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG 66 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 56899999999999 4599999999999999999954 345566554
No 135
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.64 E-value=1.7e-05 Score=76.42 Aligned_cols=68 Identities=25% Similarity=0.222 Sum_probs=42.1
Q ss_pred CceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhhccch-hhhHhhhhh--hcccccccchhhhhc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMIGGLG-AARVRTEVV--FLHCRVFLHEITIFD 89 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~~~~~-~~~l~~~f~--~~p~il~ideid~l~ 89 (640)
.+++|+||+|||||+|+++++..+ +..++.++...+........ ...+...+. ..+.+|++||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCc
Confidence 679999999999999999999854 45666666655443221100 000111111 335689999996543
No 136
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.63 E-value=1.9e-05 Score=78.47 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=37.8
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC--CCeEEecC
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN--VPFLSMNG 54 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~ 54 (640)
...+++++++++++| +.|+||||||||||+++|++... .+.+.+++
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence 356899999999999 44999999999999999999543 45666654
No 137
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.62 E-value=1.5e-05 Score=80.94 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=40.3
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-CCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-VPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-~~~i~v~~~~l~ 58 (640)
.+++++++++++| +.|+||||||||||+++|++... .+.+.+++.++.
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~ 84 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVN 84 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGG
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhh
Confidence 5899999999999 55999999999999999999543 467778776653
No 138
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.58 E-value=2.4e-05 Score=82.98 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=41.4
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
.+++++++++++| +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 5899999999999 4499999999999999999954 4678888888764
No 139
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.58 E-value=4.8e-05 Score=72.45 Aligned_cols=39 Identities=33% Similarity=0.532 Sum_probs=32.5
Q ss_pred cCCc--eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh
Q psy10020 20 VPKG--ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI 58 (640)
Q Consensus 20 ~~~G--iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~ 58 (640)
+++| ++|+|||||||||+++.|++.++.+.+.+++.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 4455 56999999999999999999888888888876653
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=3.7e-05 Score=74.20 Aligned_cols=43 Identities=37% Similarity=0.411 Sum_probs=27.1
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
...++++++.+++| ++|+|||||||||+++.|+..++..++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 35678888888877 66999999999999999999888777654
No 141
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.51 E-value=3.4e-05 Score=78.36 Aligned_cols=48 Identities=31% Similarity=0.449 Sum_probs=39.5
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc-CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA-NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~-~~~~i~v~~~~l~ 58 (640)
..++++++++++ | +.|+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGG
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECc
Confidence 568999999999 9 4599999999999999999974 3456777776553
No 142
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.50 E-value=4.5e-05 Score=75.02 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=25.3
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
+...++++++.+++| +.|+||||||||||+++|++... +.+.+
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~ 53 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYF 53 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEE
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEE
Confidence 346788999999999 55999999999999999999764 45555
No 143
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.45 E-value=5.8e-05 Score=76.21 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=33.6
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
...+++++++++++| +.|+||||||||||+++|++...
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999 44999999999999999999654
No 144
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.43 E-value=2.5e-05 Score=73.15 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=37.0
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC-CCeEEecCchh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN-VPFLSMNGSEF 57 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~-~~~i~v~~~~l 57 (640)
..+++.+++.+++| +.|+||+|||||||+|+|++.++ .+.+.+.+..+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i 70 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEee
Confidence 45678889999999 45999999999999999999653 34455555444
No 145
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.38 E-value=5e-05 Score=78.26 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=36.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC--CCeEEecC
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN--VPFLSMNG 54 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~ 54 (640)
..+++++++.+++| +.|+||||||||||+|+|++... .+.+.+++
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 99 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 46899999999999 55999999999999999999543 45555543
No 146
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.36 E-value=6.5e-05 Score=75.25 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=38.1
Q ss_pred cccccCcccCCceE-EEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 12 YYQNLGAKVPKGAL-LLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 12 ~l~~l~l~~~~GiL-L~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
.++++++++++.++ |+||||||||||+|+|++.. ..+.+.+++.++.
T Consensus 14 ~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT 63 (240)
T ss_dssp EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 58999999877433 99999999999999999954 4577888876653
No 147
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.32 E-value=0.00021 Score=69.47 Aligned_cols=70 Identities=17% Similarity=0.047 Sum_probs=39.3
Q ss_pred ceEEEcCCCchHHHHHHHHHhc--------cC-CCeEEecCchhhhhhc----------cc-----hhhhHhhhh---hh
Q psy10020 23 GALLLGPPGCGKTLLAKAVATE--------AN-VPFLSMNGSEFIEMIG----------GL-----GAARVRTEV---VF 75 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~--------~~-~~~i~v~~~~l~~~~~----------~~-----~~~~l~~~f---~~ 75 (640)
-.+++|+||||||+++..+... .+ .+++..+...+..... .. ....+...+ ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 3679999999999998775432 23 4444343332221110 00 111222221 13
Q ss_pred cccccccchhhhhccch
Q psy10020 76 LHCRVFLHEITIFDLET 92 (640)
Q Consensus 76 ~p~il~ideid~l~~~r 92 (640)
.+++|++||++.+.+.+
T Consensus 87 ~~~vliIDEAq~l~~~~ 103 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPAR 103 (199)
T ss_dssp TTCEEEETTGGGTSBCC
T ss_pred CceEEEEEChhhhccCc
Confidence 37899999999997554
No 148
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.30 E-value=9.2e-05 Score=83.66 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=42.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||+++|++. +..+.+.+++.++.
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhh
Confidence 46899999999999 559999999999999999995 45788999887764
No 149
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.29 E-value=0.00012 Score=74.12 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=46.5
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--C-CCeEEecCchhhhhh------c---------cchhhhH
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--N-VPFLSMNGSEFIEMI------G---------GLGAARV 69 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~-~~~i~v~~~~l~~~~------~---------~~~~~~l 69 (640)
+.++++++ +++| ++|+||+||||||++++|++.. . .+.+.+.+.++.... . ......+
T Consensus 14 ~~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~l 91 (261)
T 2eyu_A 14 PDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADAL 91 (261)
T ss_dssp CTHHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHH
T ss_pred HHHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHH
Confidence 46777777 5666 5699999999999999999943 2 455555443321000 0 0111123
Q ss_pred hhhhhhcccccccchhh
Q psy10020 70 RTEVVFLHCRVFLHEIT 86 (640)
Q Consensus 70 ~~~f~~~p~il~ideid 86 (640)
...+...|.++++||..
T Consensus 92 a~aL~~~p~illlDEp~ 108 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMR 108 (261)
T ss_dssp HHHHHHCCSEEEESCCC
T ss_pred HHHHhhCCCEEEeCCCC
Confidence 33444678888888874
No 150
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.27 E-value=6.5e-05 Score=85.23 Aligned_cols=51 Identities=18% Similarity=0.358 Sum_probs=43.2
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFIE 59 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~~ 59 (640)
+..+++++++++++| +.|+||||||||||+++|++.. ..|.+.+++.++..
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhh
Confidence 346899999999999 5599999999999999999954 45788898887753
No 151
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.25 E-value=0.00046 Score=89.43 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=50.6
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh---hcccccccchhhhhc
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV---FLHCRVFLHEITIFD 89 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~---~~p~il~ideid~l~ 89 (640)
....|.++.||+|||||++++.+|..++.+++.+++++-.. ...+...|. ..++.+.+||++.+.
T Consensus 643 ~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~Gaw~~~DE~nr~~ 710 (2695)
T 4akg_A 643 HQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIGAWGCFDEFNRLD 710 (2695)
T ss_dssp HTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHTCEEEEETTTSSC
T ss_pred HhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcCCEeeehhhhhcC
Confidence 34677899999999999999999999999999999876431 222333443 557889999998765
No 152
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.25 E-value=0.00011 Score=73.40 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=23.1
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
...+++++++++++| +.|.||+||||||+++.|++.++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346899999999999 44999999999999999999664
No 153
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.21 E-value=8.3e-05 Score=84.04 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=42.1
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~ 408 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLR 408 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETT
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEcc
Confidence 56899999999999 5599999999999999999954 4678888887764
No 154
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.21 E-value=0.00072 Score=72.39 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=44.5
Q ss_pred CceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhh-----cc--------chhhhHhhhhh-hcccccccch
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMI-----GG--------LGAARVRTEVV-FLHCRVFLHE 84 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~-----~~--------~~~~~l~~~f~-~~p~il~ide 84 (640)
..++|+|++||||++++++|.... ..+++.+++..+.... .| ..... .-.|. .....||+||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~-~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSK-EGFFELADGGTLFLDE 239 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCB-CCHHHHTTTSEEEEES
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccccc-CCceeeCCCcEEEEcC
Confidence 348899999999999999998744 4689999987654211 01 00011 11222 3357899999
Q ss_pred hhhhc
Q psy10020 85 ITIFD 89 (640)
Q Consensus 85 id~l~ 89 (640)
++.+.
T Consensus 240 i~~l~ 244 (387)
T 1ny5_A 240 IGELS 244 (387)
T ss_dssp GGGCC
T ss_pred hhhCC
Confidence 99886
No 155
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.15 E-value=7.5e-05 Score=84.33 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=42.3
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++++++| +.|+||||||||||+++|++.. ..|.+.+++.++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~ 406 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIK 406 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGG
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 46899999999999 5599999999999999999954 4578889888775
No 156
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.15 E-value=0.00014 Score=75.50 Aligned_cols=68 Identities=25% Similarity=0.214 Sum_probs=41.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc----CCCeEEecCchhhhhhccch-hhhHhhhhh--hcccccccchhhhh
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA----NVPFLSMNGSEFIEMIGGLG-AARVRTEVV--FLHCRVFLHEITIF 88 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~----~~~~i~v~~~~l~~~~~~~~-~~~l~~~f~--~~p~il~ideid~l 88 (640)
..+++|+||||||||+|+++|+..+ +..++.+....+........ .......+. ....+|++||+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 4679999999999999999999844 35666666655543221110 001111111 33568999998543
No 157
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.14 E-value=0.00066 Score=85.45 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=48.7
Q ss_pred cccCCceEEEcCCCchHHHHHHHHHhc---cCCCeEEecCchh----hhhhcc------------chhhhHhhhhh----
Q psy10020 18 AKVPKGALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGSEF----IEMIGG------------LGAARVRTEVV---- 74 (640)
Q Consensus 18 l~~~~GiLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~~l----~~~~~~------------~~~~~l~~~f~---- 74 (640)
+...++++|+||||||||+|+.+++.. .+.....++.... .....+ ..+..++.++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 556666999999999999999999773 3344455544321 111111 11223333332
Q ss_pred hcccccccchhhhhccchh
Q psy10020 75 FLHCRVFLHEITIFDLETK 93 (640)
Q Consensus 75 ~~p~il~ideid~l~~~r~ 93 (640)
.+|++|++|+++.+.+...
T Consensus 1504 ~~~~lVVIDsi~al~p~~~ 1522 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAE 1522 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHH
T ss_pred CCCCEEEEcChhHhccccc
Confidence 6789999999999987653
No 158
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.13 E-value=0.00011 Score=77.16 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=50.6
Q ss_pred cccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhhh-----h---hc---cch-hhhHhhhhhh
Q psy10020 12 YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFIE-----M---IG---GLG-AARVRTEVVF 75 (640)
Q Consensus 12 ~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~~-----~---~~---~~~-~~~l~~~f~~ 75 (640)
+++.+++.++.| ++|+||+|||||||+++|++.. ..+.+.+++..... . +. +.. ...+...+..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRM 239 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhh
Confidence 566777777776 6699999999999999999954 45677776643211 0 11 111 1123444457
Q ss_pred cccccccchhhh
Q psy10020 76 LHCRVFLHEITI 87 (640)
Q Consensus 76 ~p~il~ideid~ 87 (640)
.|.++++||...
T Consensus 240 ~p~ilildE~~~ 251 (330)
T 2pt7_A 240 RPDRIILGELRS 251 (330)
T ss_dssp CCSEEEECCCCS
T ss_pred CCCEEEEcCCCh
Confidence 788999999754
No 159
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.13 E-value=0.00014 Score=75.25 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=34.2
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccCCCeE
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEANVPFL 50 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~~~i 50 (640)
..+++++++.+++| +.|+||||||||||+++|++.+ .+.+
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I 154 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSV 154 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEE
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceE
Confidence 35788999999999 5599999999999999999976 4444
No 160
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.11 E-value=0.00011 Score=83.15 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=43.3
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhhh
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFIE 59 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~~ 59 (640)
.+.+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++..
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc
Confidence 346899999999999 5599999999999999999954 45788999888753
No 161
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.08 E-value=0.00015 Score=68.30 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=23.3
Q ss_pred ccCcccCCc--eEEEcCCCchHHHHHHHHH
Q psy10020 15 NLGAKVPKG--ALLLGPPGCGKTLLAKAVA 42 (640)
Q Consensus 15 ~l~l~~~~G--iLL~Gp~GsGKTtL~r~la 42 (640)
++++++++| +.|+||||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 356788888 4599999999999999754
No 162
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.07 E-value=9.1e-05 Score=83.93 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=41.5
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
.+++++++++++| +.|+||||||||||+++|++.. ..+.+.+++.++.
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhh
Confidence 5899999999999 5599999999999999999954 4578888887764
No 163
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.07 E-value=0.0001 Score=74.33 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=36.9
Q ss_pred cccccccccCcccCC---c--eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 8 KRPEYYQNLGAKVPK---G--ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~---G--iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
....+++++++.+.+ | +.|+|+|||||||+++.|++.++.+++..
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 345688999999887 6 77999999999999999999888766554
No 164
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.06 E-value=0.00031 Score=65.93 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=28.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF 57 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l 57 (640)
++|+|+|||||||+++.|+..++.+++.++...+
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 7799999999999999999998888877654433
No 165
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.01 E-value=0.00023 Score=68.57 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=25.4
Q ss_pred ccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 13 YQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 13 l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.+...+..++| +.|+|||||||||+++.|++.+
T Consensus 15 ~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 15 VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33444445666 5589999999999999999865
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.96 E-value=0.0004 Score=66.94 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=25.4
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF 57 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l 57 (640)
++|+|||||||||+++.|++.++ .+.+++..+
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~ 63 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADETG--LEFAEADAF 63 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhhC--CeEEccccc
Confidence 66999999999999999999774 455555443
No 167
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.94 E-value=0.00039 Score=64.86 Aligned_cols=28 Identities=32% Similarity=0.699 Sum_probs=23.8
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeE
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFL 50 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i 50 (640)
-++|+|||||||||+++.|++.++..++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3779999999999999999998775443
No 168
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.92 E-value=0.00045 Score=66.30 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=25.5
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhccCCCeEEecCch
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSE 56 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~ 56 (640)
..++| +.|+|||||||||++++|++..+ .+.+.+..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~ 40 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALA--EIKISISH 40 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCE
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEecee
Confidence 34556 55999999999999999999753 34444433
No 169
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00044 Score=71.57 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=34.1
Q ss_pred cccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 14 QNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 14 ~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++.+.+| +.|+|||||||||+++.||+.+ ..+.+.+.+.++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 4567777777 5599999999999999999943 4566667666543
No 170
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.88 E-value=0.00045 Score=65.26 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=26.9
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
+.++|+|||||||||+++.|+..++.+++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4478999999999999999999888777654
No 171
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.88 E-value=0.00042 Score=65.92 Aligned_cols=36 Identities=39% Similarity=0.678 Sum_probs=26.7
Q ss_pred CcccCCc--eEEEcCCCchHHHHHHHHHhc-cCCCeEEe
Q psy10020 17 GAKVPKG--ALLLGPPGCGKTLLAKAVATE-ANVPFLSM 52 (640)
Q Consensus 17 ~l~~~~G--iLL~Gp~GsGKTtL~r~la~~-~~~~~i~v 52 (640)
++..+++ ++|+|+|||||||+++.|+.. ++.+++..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 4455555 779999999999999999997 56555443
No 172
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.85 E-value=0.00047 Score=66.87 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=22.2
Q ss_pred cccCCc--eEEEcCCCchHHHHHHHHHhccC
Q psy10020 18 AKVPKG--ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 18 l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
.++++| +.|+||||||||||+++|++...
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 567788 45999999999999999999764
No 173
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.84 E-value=0.0021 Score=68.26 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=43.3
Q ss_pred CceEEEcCCCchHHHHHHHHHhccC--CCeEEecCchhhhhh-------------ccchhhhHhhhhh-hcccccccchh
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEAN--VPFLSMNGSEFIEMI-------------GGLGAARVRTEVV-FLHCRVFLHEI 85 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~~~l~~~~-------------~~~~~~~l~~~f~-~~p~il~idei 85 (640)
..++++|++||||++++++|....+ .+++.+++..+.... .+....+ .-.|. .....||+||+
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~-~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRK-KGKLELADQGTLFLDEV 231 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCE-ECHHHHTTTSEEEEETG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccccc-CChHhhcCCCeEEecCh
Confidence 3488999999999999999987443 238899888653211 0000000 11122 34467999999
Q ss_pred hhhc
Q psy10020 86 TIFD 89 (640)
Q Consensus 86 d~l~ 89 (640)
+.+.
T Consensus 232 ~~l~ 235 (368)
T 3dzd_A 232 GELD 235 (368)
T ss_dssp GGSC
T ss_pred hhCC
Confidence 9886
No 174
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.83 E-value=0.00062 Score=63.17 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.0
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEec
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMN 53 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~ 53 (640)
++|.|||||||||+++.|+..++.+++..+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 678999999999999999998887776554
No 175
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.79 E-value=0.0013 Score=85.99 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=29.2
Q ss_pred ccceeEEEeeccCC-----CcccHHHHh---HhccCcccH----HHHHHHH
Q psy10020 198 RELHIVKMETQLRA-----YESDKKLAR---KQLIDSVNR----EIAETIL 236 (640)
Q Consensus 198 ~~~viv~I~aTn~~-----~~lD~al~r---~i~i~~P~~----~i~~~~l 236 (640)
-..+.+ |+|.|.| ..|+++|+| .++++.|+. .|+..++
T Consensus 1420 i~d~~~-vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1420 LDKIQF-VGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp ESSEEE-EEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHH
T ss_pred ecCeEE-EEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHH
Confidence 356778 9999988 469999999 889999994 4544444
No 176
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.73 E-value=0.00076 Score=63.59 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=29.7
Q ss_pred cccc--cccCcccCCce-EEEcCCCchHHHHHHHHHhccC
Q psy10020 10 PEYY--QNLGAKVPKGA-LLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 10 ~~~l--~~l~l~~~~Gi-LL~Gp~GsGKTtL~r~la~~~~ 46 (640)
-..| +++.+.+.+|+ +|+|||||||||++++|+..++
T Consensus 12 f~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 12 FKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp BGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEeecCccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3455 66778888884 4899999999999999998554
No 177
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.71 E-value=0.00044 Score=68.19 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=19.1
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHH-hcc
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVA-TEA 45 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la-~~~ 45 (640)
+....+++.+++| +.|+|||||||||+++.|+ +..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4556778888888 4599999999999999999 864
No 178
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.66 E-value=0.00067 Score=63.66 Aligned_cols=29 Identities=34% Similarity=0.624 Sum_probs=25.0
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
.++|.|||||||||+++.|+..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 47899999999999999999988766554
No 179
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.64 E-value=0.00089 Score=70.93 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=34.1
Q ss_pred cccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 14 QNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 14 ~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++.+.+| +.|+|||||||||+++.||+.+ ..+.+.+.+.++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 3566777777 5599999999999999999943 4566777666553
No 180
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.62 E-value=0.00086 Score=62.76 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=24.3
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCch
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSE 56 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~ 56 (640)
++|+|||||||||+++.|++.++ .+.+++..
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~d~ 41 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLH--AAFLDGDF 41 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHT--CEEEEGGG
T ss_pred EEEEcCCCCCHHHHHHHHHHhhC--cEEEeCcc
Confidence 66999999999999999998765 34444443
No 181
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.61 E-value=0.00054 Score=72.67 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=33.7
Q ss_pred cccCcccCCc--eEEEcCCCchHHHHHHHHHhccC--CCeEEecC
Q psy10020 14 QNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN--VPFLSMNG 54 (640)
Q Consensus 14 ~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~ 54 (640)
+.+++.+++| ++|+||+|||||||+++|++... .+.+.+++
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 7788888887 66999999999999999999554 56677664
No 182
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.61 E-value=0.00098 Score=72.54 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=36.7
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC--CCeEEecCc
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN--VPFLSMNGS 55 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~~ 55 (640)
...+++++ +++.+| +.|+||||||||||+++|++... .+.+.+.+.
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 34688899 999999 55999999999999999999554 345555554
No 183
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.60 E-value=0.001 Score=74.12 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=40.8
Q ss_pred ccccccccccCc-ccCCc--eEEEcCCCchHHHHHHH--HHhc--cCCCeEEecCchh
Q psy10020 7 LKRPEYYQNLGA-KVPKG--ALLLGPPGCGKTLLAKA--VATE--ANVPFLSMNGSEF 57 (640)
Q Consensus 7 l~~~~~l~~l~l-~~~~G--iLL~Gp~GsGKTtL~r~--la~~--~~~~~i~v~~~~l 57 (640)
......++++++ .+++| ++|+||||||||||+++ +++. ++.+.+.+++.+.
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 334578899999 99999 56999999999999999 5663 3677888887663
No 184
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.59 E-value=0.00092 Score=63.31 Aligned_cols=28 Identities=43% Similarity=0.693 Sum_probs=24.2
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
++|.|+|||||||+++.|+..++..++.
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 6799999999999999999987766554
No 185
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.59 E-value=0.00081 Score=73.84 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=38.8
Q ss_pred cccccccCcccCCc-eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG-ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~ 58 (640)
...++++++.+++. +.|+||||||||||+++|++. +..+.+.+++.++.
T Consensus 17 ~~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 45788888888774 349999999999999999994 45567777776654
No 186
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.58 E-value=0.00091 Score=63.61 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.|+||||||||||+++|++.++
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999765
No 187
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.57 E-value=0.00059 Score=66.18 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=22.3
Q ss_pred cCCc--eEEEcCCCchHHHHHHHHHhccC
Q psy10020 20 VPKG--ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 20 ~~~G--iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
.++| +.|+||||||||||+++|++.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3556 45999999999999999999653
No 188
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.57 E-value=0.0011 Score=62.38 Aligned_cols=31 Identities=35% Similarity=0.702 Sum_probs=25.9
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
+.++|+|+|||||||+++.|+..++..++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3488999999999999999998877666544
No 189
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.56 E-value=0.0013 Score=63.15 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=25.0
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
+-++|.|+|||||||+++.|+..++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 347799999999999999999987655544
No 190
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.55 E-value=0.0014 Score=72.01 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=34.1
Q ss_pred ccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 13 YQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 13 l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
.+++++.+.+| +.|+|||||||||++++|++.+ ..+.+.+.+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 35677788888 5599999999999999999943 345666655544
No 191
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.54 E-value=0.0009 Score=82.51 Aligned_cols=49 Identities=29% Similarity=0.441 Sum_probs=43.5
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc--cCCCeEEecCchhhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFIE 59 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~--~~~~~i~v~~~~l~~ 59 (640)
.+++++++++++| +.|+||+|||||||+++|.+. +..|.+.+++.++..
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKT 1145 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTT
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhh
Confidence 5899999999999 669999999999999999995 457899999988753
No 192
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.54 E-value=0.0011 Score=62.60 Aligned_cols=30 Identities=33% Similarity=0.602 Sum_probs=26.1
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
-++|+|+|||||||+++.|+..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 378999999999999999999888776654
No 193
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.53 E-value=0.0013 Score=66.08 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=27.5
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGS 55 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~ 55 (640)
++|.|||||||||+++.||..++..++..+..
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 57899999999999999999888877766543
No 194
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.53 E-value=0.0012 Score=62.77 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=24.1
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCch
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSE 56 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~ 56 (640)
++|+|||||||||+++.|++.. .+.+.+++..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~-~g~~~i~~d~ 36 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL-DNSAYIEGDI 36 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS-SSEEEEEHHH
T ss_pred EEEECCCCCcHHHHHHHHhccc-CCeEEEcccc
Confidence 5689999999999999999843 3445555443
No 195
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.52 E-value=0.0012 Score=63.25 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=21.7
Q ss_pred cCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 20 VPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 20 ~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+++| +.|+|||||||||+++.|++..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4455 5699999999999999999965
No 196
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.49 E-value=0.0017 Score=72.61 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=29.4
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
..+.+++ .+.+| +.|+||||||||||+|+|++..
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678888 88898 5599999999999999999954
No 197
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.47 E-value=0.0013 Score=61.21 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.5
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
.++|.|++||||||+++.|+..++.+++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 377999999999999999999888887764
No 198
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.47 E-value=0.0007 Score=83.28 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=42.4
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFIE 59 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~~ 59 (640)
.+++++++++++| +.|+||+|||||||+++|++.. ..+.+.+++.++..
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~ 456 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGG
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHh
Confidence 5899999999999 5599999999999999999955 45788898887753
No 199
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.47 E-value=0.0011 Score=61.12 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=23.2
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|.|||||||||+++.| ..++.+++.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 669999999999999999 7776665543
No 200
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.46 E-value=0.0015 Score=68.99 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=32.4
Q ss_pred ccccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccCC
Q psy10020 9 RPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 9 ~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
...+++++ +++.+| +.|+||||||||||+++|++....
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34678888 999999 559999999999999999996543
No 201
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.45 E-value=0.0013 Score=65.80 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=28.0
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF 57 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l 57 (640)
++|+|||||||||+++.|+..++.+.+.+++..+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 6799999999999999999988766666665544
No 202
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.43 E-value=0.0016 Score=63.37 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.0
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHh
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~ 43 (640)
.+++| +.|+||||||||||+++|++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46677 55999999999999999998
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.39 E-value=0.0015 Score=64.33 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=21.9
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhccC
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
..++| +.|+||||||||||+++|++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45667 55999999999999999999654
No 204
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.38 E-value=0.0014 Score=63.82 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=23.8
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
+.|+|||||||||+++.|++.++.+++.
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 6699999999999999999987755443
No 205
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.37 E-value=0.0018 Score=62.35 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
+.|+||+||||||+++.|++ ++.+++.
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 56999999999999999998 6655543
No 206
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.37 E-value=0.0011 Score=78.44 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=32.2
Q ss_pred cccccccccCcccCCc--eEEEcCCCchHHHHHHHHHh
Q psy10020 8 KRPEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~ 43 (640)
+...+++++++.+.+| +.|+||||||||||+|+|++
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4557899999999999 55999999999999999995
No 207
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.37 E-value=0.0016 Score=61.23 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=26.7
Q ss_pred eEEEcCCCchHHHHHHHHHhcc---CCCeEEecCc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGS 55 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~ 55 (640)
+.|+|++||||||+++.|+..+ +.+++.+++.
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 5699999999999999999976 6777776543
No 208
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.36 E-value=0.0019 Score=63.70 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=27.8
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHH--hc--cCCCeEEecCch
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVA--TE--ANVPFLSMNGSE 56 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la--~~--~~~~~i~v~~~~ 56 (640)
.+++| +.|+||||||||||+++|+ +. .+.+.+.+....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 45666 5699999999999999999 43 345555555443
No 209
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.36 E-value=0.0012 Score=62.37 Aligned_cols=27 Identities=41% Similarity=0.651 Sum_probs=22.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFL 50 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i 50 (640)
++|+|+|||||||+++.|+..++..++
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 679999999999999999987765443
No 210
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.35 E-value=0.0034 Score=65.40 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=29.1
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchh
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF 57 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l 57 (640)
-++|+||+||||||+++.||..++..++..+...+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 47799999999999999999988877777655443
No 211
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.35 E-value=0.0015 Score=62.71 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=23.3
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
+.|+|++||||||+++.|++ ++.+++..
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 67999999999999999999 76555443
No 212
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.34 E-value=0.0014 Score=60.90 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=24.8
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
-++|.|++||||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 37799999999999999999988766554
No 213
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.33 E-value=0.0018 Score=66.29 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=27.8
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF 57 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l 57 (640)
++|.|||||||||+++.|+..++.+.+.++...+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 6689999999999999999877656677776444
No 214
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.32 E-value=0.0019 Score=62.71 Aligned_cols=29 Identities=28% Similarity=0.584 Sum_probs=24.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|+|||||||||+++.|+..++...+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 67999999999999999999887666554
No 215
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.32 E-value=0.00095 Score=82.33 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=42.4
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++.+++| +.|+||+|||||||+++|.+.+ ..+.+.+++.++.
T Consensus 431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~ 483 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVR 483 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccch
Confidence 46899999999999 5599999999999999999955 4578888887765
No 216
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.30 E-value=0.0012 Score=78.06 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=36.2
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC--CCeEEec
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN--VPFLSMN 53 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~ 53 (640)
..+++++++.+..| +.|+||||||||||+|+|+|... .|.+.++
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 45799999999999 55999999999999999999543 4555554
No 217
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.30 E-value=0.0018 Score=62.14 Aligned_cols=29 Identities=45% Similarity=0.737 Sum_probs=25.2
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|+|+|||||||+++.|+..++.+++..
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 67999999999999999999887776554
No 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.28 E-value=0.0019 Score=62.64 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=24.8
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|.|||||||||+++.|+..++...+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 67899999999999999998887666544
No 219
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.27 E-value=0.0015 Score=66.90 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=29.6
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
..++++.+.+++| ++|+||||+|||||++.|++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5677888888999 559999999999999999984
No 220
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.27 E-value=0.0018 Score=62.47 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.2
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+.|+||||||||||++.|++..
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6799999999999999999854
No 221
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.27 E-value=0.002 Score=59.71 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=25.1
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|.|++||||||+++.|+..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 67999999999999999999887766553
No 222
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.23 E-value=0.0012 Score=81.22 Aligned_cols=48 Identities=27% Similarity=0.430 Sum_probs=41.9
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
.+++++++.+++| +.|+||+|||||||+++|++.. ..+.+.+++.++.
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIK 1098 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTT
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcc
Confidence 5899999999999 5599999999999999999954 4678889888775
No 223
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.23 E-value=0.0021 Score=61.02 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.4
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.|+|||||||||++++|++...
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 56999999999999999998653
No 224
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.22 E-value=0.0017 Score=61.63 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=24.7
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|.|+|||||||+++.|+..++.+++..
T Consensus 12 I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 67999999999999999999887665544
No 225
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.22 E-value=0.0018 Score=61.16 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.7
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
++|.|+|||||||+++.|+..++.+++.
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 6799999999999999999877755443
No 226
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.21 E-value=0.002 Score=60.13 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|.|||||||||+++.|+.
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 67999999999999999998
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.21 E-value=0.002 Score=60.95 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.3
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.|+||||||||||++.|++...
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 56999999999999999998653
No 228
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.21 E-value=0.002 Score=62.69 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.8
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
.+++++||||||||+++.+|+..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999987643
No 229
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.20 E-value=0.0014 Score=61.71 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++|.|||||||||+++.|+..++
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998665
No 230
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.16 E-value=0.0032 Score=60.98 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.0
Q ss_pred eEEEcCCCchHHHHHHHHHhccCC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
++|+|||||||||+++.|++.++.
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCC
Confidence 558999999999999999987653
No 231
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.15 E-value=0.002 Score=60.42 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFL 50 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i 50 (640)
++|.|+|||||||+++.|+..++.+++
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 679999999999999999998887766
No 232
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0015 Score=71.51 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=32.2
Q ss_pred ccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCC-e-EEecC
Q psy10020 13 YQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVP-F-LSMNG 54 (640)
Q Consensus 13 l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~-~-i~v~~ 54 (640)
|.++++.+.+| +.|+||||||||||+|+|++.. ..+ . +.+++
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 34677888888 6699999999999999999954 234 3 55654
No 233
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.13 E-value=0.0029 Score=60.91 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=23.7
Q ss_pred CcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 17 GAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 17 ~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
-..+++| +.|+|||||||||+++.|++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445566 5599999999999999999876
No 234
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.13 E-value=0.0064 Score=64.21 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=28.0
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhc---cCCCeEEecCch
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGSE 56 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~~ 56 (640)
-+++| ++|+||||||||||+..++.. .+...+.++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45566 559999999999999999974 344566665543
No 235
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.13 E-value=0.0017 Score=62.68 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.|+||+|||||||++.|++.++
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 55999999999999999999655
No 236
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.13 E-value=0.0026 Score=63.26 Aligned_cols=26 Identities=35% Similarity=0.708 Sum_probs=21.8
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCC
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVP 48 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~ 48 (640)
-++|+|||||||||+++.|+..++..
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 37799999999999999999665543
No 237
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.12 E-value=0.0032 Score=71.36 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=28.8
Q ss_pred cccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 12 YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 12 ~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.+.+++ .+.+| +.|+||||+|||||+|+|++..
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 678888 78888 4599999999999999999954
No 238
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.10 E-value=0.0021 Score=61.13 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=24.2
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
-++|.|+|||||||+++.|+..++..++.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37799999999999999999987755444
No 239
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.09 E-value=0.0024 Score=67.04 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=37.1
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
..+++++++.+.+| +.|+||||+|||||+++|++.+ ..+.+.+.+.+..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 45788889999888 4499999999999999999843 2455555554443
No 240
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.06 E-value=0.0024 Score=62.28 Aligned_cols=29 Identities=31% Similarity=0.572 Sum_probs=24.5
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|+|+|||||||+++.|+..++..++..
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 77999999999999999999887655443
No 241
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.06 E-value=0.0024 Score=60.13 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=24.7
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
-++|.|+|||||||+++.|+..++..++..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 377999999999999999998877555443
No 242
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.05 E-value=0.0024 Score=62.60 Aligned_cols=30 Identities=30% Similarity=0.566 Sum_probs=24.9
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
-++|.|+|||||||+++.|+..++..++..
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 377999999999999999998877655543
No 243
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0025 Score=72.13 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=30.4
Q ss_pred ccccccCcccCCc-------eEEEcCCCchHHHHHHHHHhcc
Q psy10020 11 EYYQNLGAKVPKG-------ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 11 ~~l~~l~l~~~~G-------iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
..++++++++..| +.|+||||||||||+++|++..
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 4677888888888 5699999999999999999954
No 244
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.05 E-value=0.0023 Score=64.95 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=19.8
Q ss_pred eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCch
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSE 56 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~ 56 (640)
+.|+||||+|||||+++|++.. ..+.+.+.+.+
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~ 39 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK 39 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC------------
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc
Confidence 6699999999999999999943 34555555543
No 245
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.05 E-value=0.0026 Score=71.02 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=30.1
Q ss_pred ccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEec
Q psy10020 13 YQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMN 53 (640)
Q Consensus 13 l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~ 53 (640)
+...++++++| +.|+||||||||||+|+|++.. ..+.+.+.
T Consensus 284 l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 328 (538)
T 3ozx_A 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE 328 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESS
T ss_pred EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 34445567888 4499999999999999999954 34555543
No 246
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.04 E-value=0.002 Score=71.43 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=33.1
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhccC--CCeEEecCc
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEAN--VPFLSMNGS 55 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~~ 55 (640)
..++.+++.+..| ++|+||+||||||++++|++... .+.+.+.+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 4455566666555 77999999999999999999553 456666544
No 247
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.03 E-value=0.0029 Score=61.61 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=25.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI 58 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~ 58 (640)
++|.|||||||+|.++.|+..++.+ .++..++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~--~istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFV--HISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCE--EEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe--EEcHHHHH
Confidence 5789999999999999999987654 44444544
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.02 E-value=0.0037 Score=60.32 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.8
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhccCCCeEEecCc
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATEANVPFLSMNGS 55 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~ 55 (640)
.+++| ++|+||||+|||||++.+++..+.+.+.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 46666 56999999999999999998444455555443
No 249
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.01 E-value=0.0036 Score=67.60 Aligned_cols=42 Identities=31% Similarity=0.399 Sum_probs=28.4
Q ss_pred cccccCcccCCc-eEEEcCCCchHHHHHHHHHhccC--CCeEEecC
Q psy10020 12 YYQNLGAKVPKG-ALLLGPPGCGKTLLAKAVATEAN--VPFLSMNG 54 (640)
Q Consensus 12 ~l~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v~~ 54 (640)
+++++ +..+.| ++|+||+||||||++++|++... .+.+.+.+
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 44444 333445 56999999999999999999543 34444433
No 250
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.01 E-value=0.0029 Score=60.64 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=24.2
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|.|++||||||+++.|+..++..++..
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 66999999999999999998877655443
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.01 E-value=0.0033 Score=60.78 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=22.4
Q ss_pred CcccCCc--eEEEcCCCchHHHHHHHHHhccC
Q psy10020 17 GAKVPKG--ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 17 ~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+++..+| ++|+||||+|||||++.|++...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3444455 66899999999999999998654
No 252
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.99 E-value=0.0034 Score=57.74 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=24.3
Q ss_pred ccccCcccCCc-eEEEcCCCchHHHHHHHHHh
Q psy10020 13 YQNLGAKVPKG-ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 13 l~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~ 43 (640)
+.+..+.+..| .+|+||+|+|||+++.+|.-
T Consensus 14 ~~~~~i~f~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCCeEEEECCCCCCHHHHHHHHHH
Confidence 33445566677 45899999999999999985
No 253
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.98 E-value=0.0015 Score=70.15 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=33.0
Q ss_pred cccccccccCcccCCceE-EEcCCCchHHHHHHHHHhccC
Q psy10020 8 KRPEYYQNLGAKVPKGAL-LLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~GiL-L~Gp~GsGKTtL~r~la~~~~ 46 (640)
++-..++++++.+.+|+. |+||||||||||+++|+..++
T Consensus 46 ~nf~~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 46 RNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEETTEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ccccceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 445678899999999933 999999999999999988654
No 254
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.96 E-value=0.0028 Score=61.49 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=25.0
Q ss_pred cccccCc-ccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 12 YYQNLGA-KVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 12 ~l~~l~l-~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
.++.+.. .+++| ++|+||||||||||++.|++.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444433 56666 568999999999999999963
No 255
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.96 E-value=0.0031 Score=61.16 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=24.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|.|||||||||+++.|+..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 67999999999999999999887666554
No 256
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.96 E-value=0.0035 Score=62.82 Aligned_cols=27 Identities=41% Similarity=0.548 Sum_probs=22.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFL 50 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i 50 (640)
+.|.||+||||||+++.|+..++..++
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 559999999999999999977765443
No 257
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.96 E-value=0.0022 Score=62.59 Aligned_cols=31 Identities=39% Similarity=0.589 Sum_probs=24.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
..+++++ ++| +.|+||||||||||+++|++.
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456654 456 559999999999999999985
No 258
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.95 E-value=0.0017 Score=66.06 Aligned_cols=151 Identities=11% Similarity=0.032 Sum_probs=84.8
Q ss_pred ccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhc
Q psy10020 282 TASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVA 361 (640)
Q Consensus 282 gadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA 361 (640)
|.++...+.|...+.+...+..++...++++..+++ +++...... .........++|+|.+|+|+......
T Consensus 77 g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Dei---d~~~~~r~~---~~~~~~~~~~~~~l~~Lsgg~~~~~~--- 147 (274)
T 2x8a_A 77 GPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEV---DALCPRRSD---RETGASVRVVNQLLTEMDGLEARQQV--- 147 (274)
T ss_dssp TTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETC---TTTCC------------CTTHHHHHHHHHHTCCSTTCE---
T ss_pred cHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehh---hhhhcccCC---CcchHHHHHHHHHHHhhhcccccCCE---
Confidence 344444444444456677888887788888788888 332211110 01111234567999999999654322
Q ss_pred cccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhcc-ccccceEEec--------cc
Q psy10020 362 FHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRS-HRVLRKWVLS--------SL 432 (640)
Q Consensus 362 ~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~-G~aAE~ii~g--------~~ 432 (640)
++..++|+++.+|+++++|+ +++..+.+.+|+. ..|..++..+..... -....++.+. ..
T Consensus 148 -------i~ia~tn~p~~LD~al~r~g-Rfd~~i~~~~P~~---~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g 216 (274)
T 2x8a_A 148 -------FIMAATNRPDIIDPAILRPG-RLDKTLFVGLPPP---ADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDC 216 (274)
T ss_dssp -------EEEEEESCGGGSCHHHHSTT-SSCEEEECCSCCH---HHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGS
T ss_pred -------EEEeecCChhhCCHhhcCcc-cCCeEEEeCCcCH---HHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCC
Confidence 56667789999999999996 5555555555543 234555544332100 0111222221 25
Q ss_pred cchhhhhHHHHHHHHHHHhch
Q psy10020 433 LTVNKFASLVCRQVAFHESGH 453 (640)
Q Consensus 433 ttGA~l~~n~~~~~A~~e~gh 453 (640)
.+||++ .++++.+++.+..+
T Consensus 217 ~sgadl-~~l~~~a~~~a~~~ 236 (274)
T 2x8a_A 217 YTGADL-SALVREASICALRQ 236 (274)
T ss_dssp CCHHHH-HHHHHHHHHHHHHH
T ss_pred cCHHHH-HHHHHHHHHHHHHH
Confidence 678999 66666666655543
No 259
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.93 E-value=0.0031 Score=60.01 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=23.3
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFL 50 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i 50 (640)
++|.|++||||||+++.|+..++..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 679999999999999999998776443
No 260
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.92 E-value=0.0023 Score=62.45 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=23.7
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCCCe
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANVPF 49 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~~~ 49 (640)
.-++|.|||||||||+++.|+..++..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~ 33 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAH 33 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 3478999999999999999999877533
No 261
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.91 E-value=0.0044 Score=65.57 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=27.4
Q ss_pred cccCcccCC--c--eEEEcCCCchHHHHHHHHHhccCC
Q psy10020 14 QNLGAKVPK--G--ALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 14 ~~l~l~~~~--G--iLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
..+++.+.+ | +.|+||||||||||+++|++.+..
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 446666666 6 669999999999999999996543
No 262
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.91 E-value=0.0023 Score=66.13 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCc--eEEEcCCCchHHHHHHHHHhccC
Q psy10020 21 PKG--ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 21 ~~G--iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
.+| +.|+||||||||||+++|++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 566 44999999999999999999543
No 263
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.89 E-value=0.0029 Score=61.63 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=24.8
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|.|+|||||||+++.|+..++..++..
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 77999999999999999999887655544
No 264
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.88 E-value=0.0046 Score=58.33 Aligned_cols=30 Identities=23% Similarity=0.101 Sum_probs=25.1
Q ss_pred eEEEcCCCchHHHHHHHHHhcc---CCCeEEec
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA---NVPFLSMN 53 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~ 53 (640)
++|.|++||||||+++.|+..+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999999876 66666553
No 265
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.88 E-value=0.015 Score=76.38 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=48.6
Q ss_pred ccCCceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhhhhhccchhhhHhhhhh---hcccccccchhhhhc
Q psy10020 19 KVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVV---FLHCRVFLHEITIFD 89 (640)
Q Consensus 19 ~~~~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~~~~~~~~~~~l~~~f~---~~p~il~ideid~l~ 89 (640)
....|..+.||+|||||.+++.+|..++.+++.+++++-.. ...+...|. ...+-..+||+..+.
T Consensus 602 ~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~GaW~cfDEfNrl~ 669 (3245)
T 3vkg_A 602 ESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQCGAWGCFDEFNRLE 669 (3245)
T ss_dssp HTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHHTCEEEEETTTSSC
T ss_pred HhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhcCcEEEehhhhcCC
Confidence 34566789999999999999999999999999998876431 122333333 456777889988765
No 266
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.87 E-value=0.005 Score=60.38 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=27.9
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhc--c-------CCCeEEecCch
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATE--A-------NVPFLSMNGSE 56 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~--~-------~~~~i~v~~~~ 56 (640)
.+++| ++|+||||+|||||++.|++. . +.+.+.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 45666 569999999999999999983 2 34556665543
No 267
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.87 E-value=0.0021 Score=69.38 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=28.2
Q ss_pred ccccCcccCCce----EEEcCCCchHHHHHHHHHhc
Q psy10020 13 YQNLGAKVPKGA----LLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 13 l~~l~l~~~~Gi----LL~Gp~GsGKTtL~r~la~~ 44 (640)
++++++.+++|. .|+||||+|||||+++|++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 889999999993 38999999999999999985
No 268
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.86 E-value=0.0036 Score=61.51 Aligned_cols=33 Identities=18% Similarity=0.448 Sum_probs=26.0
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI 58 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~ 58 (640)
++|+|||||||+|.++.|+..++. ..++..++.
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g~--~hIstGdll 64 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFHF--NHLSSGDLL 64 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCC--EEECHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC--ceEcHHHHH
Confidence 668999999999999999998754 455544544
No 269
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.86 E-value=0.0055 Score=63.36 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=27.1
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCCCeEEecCc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANVPFLSMNGS 55 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~ 55 (640)
+.++|+||+|+|||+|++.++.......+.+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 3577999999999999999998766556666554
No 270
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.85 E-value=0.014 Score=62.71 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=26.5
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHh--cc-------CCCeEEecCch
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVAT--EA-------NVPFLSMNGSE 56 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~--~~-------~~~~i~v~~~~ 56 (640)
-+++| ++|+||||||||||++.++. .. +.+.++++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 45566 55999999999999996652 22 23466776654
No 271
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.83 E-value=0.0054 Score=61.63 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=25.7
Q ss_pred eEEEcCCCchHHHHHHHHHhc---cCCCeEEecCc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGS 55 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~ 55 (640)
++|.|+|||||||+++.|+.. .+..++.++..
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 679999999999999999986 56666655543
No 272
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.81 E-value=0.0037 Score=69.83 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=27.4
Q ss_pred cccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 12 YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 12 ~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.++.+++.+++| +.|+||||||||||+|+|++..
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355556667788 4499999999999999999954
No 273
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.79 E-value=0.0036 Score=62.36 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=23.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
++|.|||||||||+++.|+..++...+.
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 7799999999999999999877654443
No 274
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.79 E-value=0.005 Score=63.66 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=27.3
Q ss_pred eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchhh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEFI 58 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l~ 58 (640)
+.|+|||||||||+++.|++.+ ..+.+.+.+.++.
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 5599999999999999999843 3556677666653
No 275
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.76 E-value=0.0039 Score=67.87 Aligned_cols=26 Identities=23% Similarity=0.112 Sum_probs=21.6
Q ss_pred ceEEEcCCCchHHHHHHHH-HhccCCCe
Q psy10020 23 GALLLGPPGCGKTLLAKAV-ATEANVPF 49 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~l-a~~~~~~~ 49 (640)
.+||.|+||+ ||++++.+ +..++...
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ 267 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGV 267 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEE
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeE
Confidence 4899999999 99999999 77655433
No 276
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.75 E-value=0.0054 Score=58.09 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=23.7
Q ss_pred eEEEcCCCchHHHHHHHHHhcc---CCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA---NVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~---~~~~i~v 52 (640)
+.|.|++||||||+++.|+..+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 5689999999999999999876 7666544
No 277
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.75 E-value=0.0011 Score=69.89 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=28.8
Q ss_pred cccccCcccCCc----eEEEcCCCchHHHHHHHHHhccCCCe
Q psy10020 12 YYQNLGAKVPKG----ALLLGPPGCGKTLLAKAVATEANVPF 49 (640)
Q Consensus 12 ~l~~l~l~~~~G----iLL~Gp~GsGKTtL~r~la~~~~~~~ 49 (640)
+++.+...+..| ++|+|||||||||++++|++.++.++
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 444444445444 67999999999999999999776555
No 278
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.75 E-value=0.0038 Score=61.51 Aligned_cols=29 Identities=45% Similarity=0.622 Sum_probs=24.7
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
++|.|+|||||||+++.|+..++..++..
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 77999999999999999999887655443
No 279
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.73 E-value=0.014 Score=61.39 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=26.6
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhc---cCCCeEEecCc
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGS 55 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~ 55 (640)
-+++| ++|+||||||||||+..++.. .+...+.++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45566 669999999999999988863 34455555443
No 280
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.70 E-value=0.0049 Score=63.94 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.2
Q ss_pred cCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 20 VPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 20 ~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+.+| +.|.||||||||||+++|++.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 5667 4499999999999999999954
No 281
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.70 E-value=0.0057 Score=58.49 Aligned_cols=29 Identities=38% Similarity=0.630 Sum_probs=25.4
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
+.|.|++||||||+++.|+..++.+++..
T Consensus 5 i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 56999999999999999999888776654
No 282
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.70 E-value=0.0046 Score=62.55 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHhcc
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~ 45 (640)
..+++|+||||||||+++++||...
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3469999999999999999999854
No 283
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.69 E-value=0.0043 Score=70.24 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=27.5
Q ss_pred cccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 12 YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 12 ~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.++.+++++.+| +.|+||||||||||+|+|++..
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355556667888 4499999999999999999954
No 284
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.69 E-value=0.0019 Score=63.95 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=24.6
Q ss_pred cccCCc-eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 18 AKVPKG-ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 18 l~~~~G-iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
+++..+ +.|+||||||||||+++|++.+ ..+.+.+++.++
T Consensus 23 ~~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 23 FDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp ECHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 334345 4489999999999999999943 345566666554
No 285
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.68 E-value=0.0037 Score=66.11 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=21.2
Q ss_pred CCc-eEEEcCCCchHHHHHHHHHhcc
Q psy10020 21 PKG-ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 21 ~~G-iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+.| ++|+||+||||||++++|++..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 455 5699999999999999999843
No 286
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.68 E-value=0.0053 Score=58.56 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=24.2
Q ss_pred eEEEcCCCchHHHHHHHHHhcc-CCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA-NVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~-~~~~i~v 52 (640)
++|.|++||||||+++.|+..+ +.+++.+
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 6799999999999999999987 3555554
No 287
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.65 E-value=0.0049 Score=59.35 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.7
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++|+|||||||||+++.|+..++
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCc
Confidence 67999999999999999998664
No 288
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.64 E-value=0.0051 Score=61.07 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=23.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
+.|.|||||||||+++.|+..++..++.
T Consensus 12 i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 6699999999999999999987754433
No 289
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.64 E-value=0.005 Score=59.06 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.9
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+.|+||||||||||++.|++.+
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 5699999999999999999954
No 290
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.63 E-value=0.0058 Score=58.15 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
+.|+|++||||||+++.|+.. +.+++.
T Consensus 11 I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 669999999999999999997 555544
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.61 E-value=0.0035 Score=59.03 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++|.|+|||||||+++.|+..++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998654
No 292
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.61 E-value=0.0058 Score=64.40 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=25.6
Q ss_pred cCcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 16 LGAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 16 l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
++..+++| +.|+||||||||||++.+++..
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36678888 5599999999999999999854
No 293
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.60 E-value=0.0053 Score=60.11 Aligned_cols=28 Identities=25% Similarity=0.498 Sum_probs=23.4
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
++|.|||||||||+++.|+..++..++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 6789999999999999999877654433
No 294
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.60 E-value=0.0055 Score=64.81 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=30.3
Q ss_pred ccccccccCcccCCceE-EEcCCCchHHHHHHHHHhc
Q psy10020 9 RPEYYQNLGAKVPKGAL-LLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 9 ~~~~l~~l~l~~~~GiL-L~Gp~GsGKTtL~r~la~~ 44 (640)
+...++++++.++.|+. |+||||+||||++++|+..
T Consensus 13 ~~~~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 13 NYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp SBTTCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccceeeeEEEEcCCeEEEECCCCCChhHHHHHHHHh
Confidence 44567788899999944 9999999999999999873
No 295
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.54 E-value=0.0052 Score=59.52 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=27.3
Q ss_pred cccCCc--eEEEcCCCchHHHHHHHHHhccC----CCeEEecC
Q psy10020 18 AKVPKG--ALLLGPPGCGKTLLAKAVATEAN----VPFLSMNG 54 (640)
Q Consensus 18 l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~----~~~i~v~~ 54 (640)
..+++| ++|.|++||||||+++.|+..++ .+.+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 344556 56899999999999999998653 33666653
No 296
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.54 E-value=0.0088 Score=57.27 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.7
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCC
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
+-++|+||||+|||||++.|....+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 34789999999999999999875543
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.53 E-value=0.0048 Score=65.60 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=24.9
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
..+.++. +++| ++|+||+||||||++++|++.+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455544 4444 6699999999999999999843
No 298
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.51 E-value=0.0062 Score=59.11 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=22.3
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
+.|.|++||||||+++.|+. ++.+++.
T Consensus 7 I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 66999999999999999998 6554443
No 299
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.49 E-value=0.0056 Score=58.85 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=24.4
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
+.|+|++||||||+++.|+..++.+++..
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 56999999999999999998777665553
No 300
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.47 E-value=0.0092 Score=61.56 Aligned_cols=31 Identities=29% Similarity=0.286 Sum_probs=24.8
Q ss_pred CceEEEcCCCchHHHHHHHHHhccCCCeEEecC
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATEANVPFLSMNG 54 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~ 54 (640)
+.++|+||+|+|||+|++.++...+ .+.+++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 4477999999999999999998764 555544
No 301
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.44 E-value=0.0065 Score=60.01 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=22.6
Q ss_pred ccccCcccC---Cc--eEEEcCCCchHHHHHHHHHhccC
Q psy10020 13 YQNLGAKVP---KG--ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 13 l~~l~l~~~---~G--iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.+.++.+. +| ++|.|||||||||+++.|+..++
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 344444443 66 55889999999999999999665
No 302
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.44 E-value=0.0055 Score=64.98 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=27.3
Q ss_pred ccccccCcccCCc-eEEEcCCCchHHHHHHHHHh
Q psy10020 11 EYYQNLGAKVPKG-ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 11 ~~l~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~ 43 (640)
..+++..+.++.| .+|+||||+||||++.+|+.
T Consensus 12 ~~~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 12 LGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp TTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCccceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456677888888 44899999999999999985
No 303
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.43 E-value=0.0083 Score=66.94 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=28.2
Q ss_pred cccccccCcccC-Cc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 10 PEYYQNLGAKVP-KG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 10 ~~~l~~l~l~~~-~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+.-|+-++++.+ +| +.|+||||||||||+|+|++..
T Consensus 11 ~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 11 VNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344666677776 56 4499999999999999999954
No 304
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.42 E-value=0.0071 Score=63.17 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=27.6
Q ss_pred CCc--eEEEcCCCchHHHHHHHHHhcc--CCCeEEecCchh
Q psy10020 21 PKG--ALLLGPPGCGKTLLAKAVATEA--NVPFLSMNGSEF 57 (640)
Q Consensus 21 ~~G--iLL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~~l 57 (640)
++| +.|+|||||||||+++.|++.+ ..+.+.+.+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 455 5599999999999999999843 345566655554
No 305
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.41 E-value=0.0026 Score=68.62 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=32.7
Q ss_pred ccccccCcccCCce----------------------EEEcCCCchHHHHHHHHHhcc--CCCeEEecCc
Q psy10020 11 EYYQNLGAKVPKGA----------------------LLLGPPGCGKTLLAKAVATEA--NVPFLSMNGS 55 (640)
Q Consensus 11 ~~l~~l~l~~~~Gi----------------------LL~Gp~GsGKTtL~r~la~~~--~~~~i~v~~~ 55 (640)
.+++++++.+++|- .|+||||+|||||+++|++.. ..+.+.+.+.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~ 105 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV 105 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe
Confidence 46777788777664 389999999999999999943 3444444443
No 306
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.40 E-value=0.0061 Score=58.34 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.4
Q ss_pred eEEEcCCCchHHHHHHHHHhccCC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
++|.|+|||||||+++.|+..++.
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 669999999999999999987654
No 307
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.011 Score=66.83 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.8
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.+.+| +.|+||||+|||||+|+|++..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 35677 4499999999999999999954
No 308
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.26 E-value=0.0088 Score=57.86 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=25.2
Q ss_pred ccccCcccCCc-eEEEcCCCchHHHHHHHHHhcc
Q psy10020 13 YQNLGAKVPKG-ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 13 l~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
|.+..+.+..| .+|+||||+||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 14 HSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp BSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 33445666677 4589999999999999998644
No 309
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.24 E-value=0.0088 Score=56.44 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=19.8
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
++|.|+|||||||+++.|+..+
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6699999999999999999854
No 310
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.23 E-value=0.0056 Score=70.18 Aligned_cols=29 Identities=34% Similarity=0.694 Sum_probs=26.1
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHH
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLA 38 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~ 38 (640)
..+++++++++++| +.|+||||||||||+
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 46799999999999 449999999999997
No 311
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.21 E-value=0.0045 Score=71.02 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=27.9
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHH
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVA 42 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la 42 (640)
..++++++++++| +.|+||||||||||+++|.
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 4689999999999 4599999999999998654
No 312
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.17 E-value=0.012 Score=56.55 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=21.6
Q ss_pred cCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 20 VPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 20 ~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.++| +.|.||+||||||+++.|++.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455 5599999999999999999854
No 313
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.16 E-value=0.0058 Score=58.41 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=25.8
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
..+.+ +++.+| +.|+|+||+|||||++.|++.
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34555 667777 669999999999999999874
No 314
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.15 E-value=0.0043 Score=59.59 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.5
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++|.|++||||||+++.|+..++
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 66999999999999999998654
No 315
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.10 E-value=0.0065 Score=57.32 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=24.1
Q ss_pred eEEEcCCCchHHHHHHHHHhccC-----CCeEEecCchhh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN-----VPFLSMNGSEFI 58 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~-----~~~i~v~~~~l~ 58 (640)
+.|+||||||||||++.|++.+. .+.+.+++.++.
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence 66999999999999999998542 466777776643
No 316
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.09 E-value=0.011 Score=58.09 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=26.7
Q ss_pred cccCCc--eEEEcCCCchHHHHHHHHHhccCCCeEEecCch
Q psy10020 18 AKVPKG--ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSE 56 (640)
Q Consensus 18 l~~~~G--iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~ 56 (640)
...++| +.|.||+||||||+++.|++. .+.+.+.+.+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~--~g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY--KNDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG--TTTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc--cCCeEEEecC
Confidence 344667 458999999999999999987 3334444443
No 317
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.07 E-value=0.0067 Score=68.76 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=26.9
Q ss_pred cccCCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCch
Q psy10020 18 AKVPKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSE 56 (640)
Q Consensus 18 l~~~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~ 56 (640)
+++|. +.|+||+|||||||+++|+|.. +.|.+.+.+.+
T Consensus 43 l~lp~-iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~ 83 (608)
T 3szr_A 43 LALPA-IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLV 83 (608)
T ss_dssp CCCCC-EECCCCTTSCHHHHHHHHHSCC-------CCCSCEE
T ss_pred ccCCe-EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEE
Confidence 45555 7799999999999999999954 45666665554
No 318
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.05 E-value=0.0071 Score=62.34 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=20.8
Q ss_pred ccccccccccCcccCCceEEEcCCCchHHHHHHHHHhc
Q psy10020 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 7 l~~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~ 44 (640)
++...+++++++. +.|+||||+|||||++.|++.
T Consensus 8 ~~~~~~l~~~~~~----I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 8 VHRKSVKKGFEFT----LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ----------CEE----EEEEEETTSSHHHHHHHHHC-
T ss_pred ECCEEEEcCCCEE----EEEECCCCCCHHHHHHHHhCC
Confidence 3455677777776 489999999999999999873
No 319
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.03 E-value=0.035 Score=58.58 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=26.5
Q ss_pred cCCc--eEEEcCCCchHHHHHHHHHhc---cCCCeEEecC
Q psy10020 20 VPKG--ALLLGPPGCGKTLLAKAVATE---ANVPFLSMNG 54 (640)
Q Consensus 20 ~~~G--iLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~ 54 (640)
+++| ++|+||||+|||||+..++.. .+...+.++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4455 669999999999999988863 3456666665
No 320
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.02 E-value=0.011 Score=63.94 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=25.4
Q ss_pred ccccccccCcccCCceEEEcCCCchHHHHHHHHHhcc
Q psy10020 9 RPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 9 ~~~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~~~ 45 (640)
...+++++++. +.|+||||+|||||++.|++..
T Consensus 23 ~~~vl~~vsf~----I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 23 RKSVKRGFEFT----LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp TTTCC-CCCEE----EEEECCTTSSHHHHHHHHTTCC
T ss_pred CEEEecCCCEE----EEEECCCCCcHHHHHHHHhCCC
Confidence 34556666665 4899999999999999999843
No 321
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.01 E-value=0.011 Score=58.33 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=23.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
+.|+|++||||||+++.|+..++.+++.
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 6699999999999999999988765544
No 322
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.97 E-value=0.01 Score=70.09 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=28.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~ 43 (640)
..+.+++++.++.| ++|+||||+||||++|+++.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 45677888888877 55999999999999999975
No 323
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.96 E-value=0.0096 Score=60.28 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=21.9
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
.+++| ++|+||||||||||++.+++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35666 569999999999999999974
No 324
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.93 E-value=0.012 Score=58.64 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=22.0
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVP 48 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~ 48 (640)
+.|.|++||||||+++.|+..++.+
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhh
Confidence 5699999999999999999877654
No 325
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.93 E-value=0.011 Score=66.02 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=28.2
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhccC--C--CeEEecCchh
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATEAN--V--PFLSMNGSEF 57 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~~~--~--~~i~v~~~~l 57 (640)
.+.+| +.|+|+||||||||+++|++.+. . .+..+++..+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 34566 56999999999999999999653 2 2334665544
No 326
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.90 E-value=0.011 Score=68.88 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=27.5
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHHHHHHh
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~ 43 (640)
..+++++++. +.| ++|+||||+||||++|+|++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3467777777 666 55999999999999999998
No 327
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.89 E-value=0.04 Score=58.35 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=26.1
Q ss_pred cCCc--eEEEcCCCchHHHHHHHHHhc---cCCCeEEecCc
Q psy10020 20 VPKG--ALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGS 55 (640)
Q Consensus 20 ~~~G--iLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~ 55 (640)
+++| ++|+||||+|||+|+..++.. .+..++.++..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4455 668999999999999888763 34556665543
No 328
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.84 E-value=0.018 Score=56.30 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=27.7
Q ss_pred CcccCCc--eEEEcCCCchHHHHHHHHHh---ccCCCeEEecCc
Q psy10020 17 GAKVPKG--ALLLGPPGCGKTLLAKAVAT---EANVPFLSMNGS 55 (640)
Q Consensus 17 ~l~~~~G--iLL~Gp~GsGKTtL~r~la~---~~~~~~i~v~~~ 55 (640)
+--+++| ++|+||||+|||||+..++. ..+.+.+.++..
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4456666 56999999999999887765 234566666544
No 329
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.83 E-value=0.006 Score=58.63 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.4
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++|.|++||||||+++.|+..++
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 66999999999999999998543
No 330
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.82 E-value=0.014 Score=56.44 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=25.3
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
-+.|+|++||||||+++.|+..++.+++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 367999999999999999999887665554
No 331
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.79 E-value=0.014 Score=61.02 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=28.8
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF 57 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l 57 (640)
++|+||+|||||+|+..||..++..++..+...+
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 6699999999999999999998877777665544
No 332
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.71 E-value=0.028 Score=58.17 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=25.0
Q ss_pred ccCCc-eEEEcCCCchHHHHHHHHHhcc-----CCCeEEecCc
Q psy10020 19 KVPKG-ALLLGPPGCGKTLLAKAVATEA-----NVPFLSMNGS 55 (640)
Q Consensus 19 ~~~~G-iLL~Gp~GsGKTtL~r~la~~~-----~~~~i~v~~~ 55 (640)
-+++| ++|+||||||||||+-.++... +...+.++..
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 35667 4489999999999976665422 4445556543
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.67 E-value=0.012 Score=61.11 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.1
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.|.|||||||||++++|++.+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 44999999999999999998654
No 334
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.64 E-value=0.0031 Score=62.88 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=63.4
Q ss_pred ccchhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhc
Q psy10020 282 TASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVA 361 (640)
Q Consensus 282 gadi~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA 361 (640)
++++...+.|.+...+...+..++...++++..+++ +++..-............+.+++++|.+++++......++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDei---d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v- 153 (257)
T 1lv7_A 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEI---DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV- 153 (257)
T ss_dssp SCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTH---HHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEE-
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhh---hhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEE-
Confidence 444555555666777778888888877878788888 4443221110000111123467799999999876554443
Q ss_pred cccccchhhhcccCCCCcceEEEEecCCCCccceEEEcCC
Q psy10020 362 FHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPS 401 (640)
Q Consensus 362 ~hEaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~ 401 (640)
|+ .+|+++.++++.++|+ ++...+.+.+|+
T Consensus 154 -------I~--~tn~~~~l~~~l~r~~-rf~~~i~i~~P~ 183 (257)
T 1lv7_A 154 -------IA--ATNRPDVLDPALLRPG-RFDRQVVVGLPD 183 (257)
T ss_dssp -------EE--EESCTTTSCGGGGSTT-SSCEEEECCCCC
T ss_pred -------EE--eeCCchhCCHHHcCCC-cCCeEEEeCCCC
Confidence 33 4466777888888774 555444444444
No 335
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.53 E-value=0.013 Score=59.62 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=21.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
+.|.|++||||||+++.|+ .++.+++.
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 6699999999999999999 45554443
No 336
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.52 E-value=0.017 Score=60.57 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=25.3
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNG 54 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~ 54 (640)
++|.||+|||||||++.|+..++..++..+.
T Consensus 10 I~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred EEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 6699999999999999999988755554443
No 337
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.50 E-value=0.015 Score=60.86 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=24.4
Q ss_pred ccccCcccCCc-eEEEcCCCchHHHHHHHHHh
Q psy10020 13 YQNLGAKVPKG-ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 13 l~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~ 43 (640)
|.+..+.+..| .+|+||||+|||+++.+|..
T Consensus 14 ~~~~~i~f~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 14 HSDTVVEFKEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEEEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCeEEcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 44445667777 45899999999999999865
No 338
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.49 E-value=0.012 Score=59.95 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.4
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++|.|+|||||||+++.|+..
T Consensus 5 I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999984
No 339
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.46 E-value=0.016 Score=59.70 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=20.0
Q ss_pred eEEEcCCCchHHHHHHHHHhccC--CCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN--VPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v 52 (640)
+.|+||||+|||||+++|++... .+.+.+
T Consensus 172 v~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred EEEECCCCCcHHHHHHHhcccccccccceec
Confidence 45999999999999999998543 444554
No 340
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.44 E-value=0.017 Score=54.74 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++|+|++|+|||||++.+++.
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 669999999999999999984
No 341
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.41 E-value=0.019 Score=59.28 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=23.0
Q ss_pred cCcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 16 LGAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 16 l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+++...++ ++|+||+||||||+++.||+.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34434444 5699999999999999999843
No 342
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.41 E-value=0.011 Score=61.39 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.7
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
++|+|++|||||||++.|.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 5689999999999999999854
No 343
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.38 E-value=0.019 Score=54.60 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.5
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++|+|++|+|||||++.+++.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999999984
No 344
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.38 E-value=0.017 Score=59.66 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=28.7
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecCchhh
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFI 58 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l~ 58 (640)
-++|.||+|||||+|+..||..++..++..+...+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 367899999999999999999887666666554443
No 345
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.38 E-value=0.015 Score=62.74 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.5
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVP 48 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~ 48 (640)
++|+|+|||||||+++.|+..++..
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~~~~ 285 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSAGYV 285 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGGTCE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcE
Confidence 6689999999999999999877543
No 346
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.31 E-value=0.01 Score=57.03 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.3
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++|.|++||||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999998654
No 347
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.30 E-value=0.017 Score=59.97 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=26.1
Q ss_pred cccCcccCCce-EEEcCCCchHHHHHHHHHhcc
Q psy10020 14 QNLGAKVPKGA-LLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 14 ~~l~l~~~~Gi-LL~Gp~GsGKTtL~r~la~~~ 45 (640)
....+++..|+ +|+||||+|||+|+++|...+
T Consensus 16 ~~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 16 RPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SCEEEECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCeEEecCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence 34567777884 499999999999999999754
No 348
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.30 E-value=0.021 Score=59.09 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=26.5
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCchh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF 57 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~~l 57 (640)
++|.||+|||||+|+..||..++..++..+...+
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred EEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 5689999999999999999987765555544333
No 349
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.24 E-value=0.019 Score=66.67 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.6
Q ss_pred ccccccCcccCCceEEEcCCCchHHHHHHHHHh
Q psy10020 11 EYYQNLGAKVPKGALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 11 ~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~ 43 (640)
.+++++++. ..-++|+||||+||||++|+|++
T Consensus 567 ~vl~disl~-g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 567 FVPNDLEMA-HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp CCCEEEEES-SCEEEEESCSSSSHHHHHHHHHH
T ss_pred eEeeeccCC-CcEEEEECCCCCChHHHHHHHHh
Confidence 456677766 23366999999999999999998
No 350
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.16 E-value=0.02 Score=67.82 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=27.2
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~ 43 (640)
.+.+++++.+..| ++|+||||+||||++|.++.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566778888877 56999999999999999943
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.11 E-value=0.022 Score=55.01 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHhccC
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
.++++|.||+|+|||+|+..|+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 34588999999999999999998654
No 352
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.03 E-value=0.016 Score=55.24 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=27.4
Q ss_pred ccccccCcccCCc-eEEEcCCCchHHHHHHHHHh
Q psy10020 11 EYYQNLGAKVPKG-ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 11 ~~l~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~ 43 (640)
.+++.+++..+.. ++++|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5667777776665 77999999999999999976
No 353
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.96 E-value=0.031 Score=58.04 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=25.6
Q ss_pred cccCcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 14 QNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 14 ~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.++++...++ ++++||+|+||||++..||+.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666666 5589999999999999999843
No 354
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.84 E-value=0.083 Score=66.84 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=45.4
Q ss_pred cccCCceEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchhhhhh----ccc---------------hhhhHhhhhh-
Q psy10020 18 AKVPKGALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEFIEMI----GGL---------------GAARVRTEVV- 74 (640)
Q Consensus 18 l~~~~GiLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l~~~~----~~~---------------~~~~l~~~f~- 74 (640)
+.....++|.|+||+|||+|+..+|... +.++++++........ .+. ....++.+..
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 3333447799999999999999998733 3457777765433211 110 0011111111
Q ss_pred hcccccccchhhhhcc
Q psy10020 75 FLHCRVFLHEITIFDL 90 (640)
Q Consensus 75 ~~p~il~ideid~l~~ 90 (640)
..|+++++|.+..+..
T Consensus 809 ~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTP 824 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred cCCCEEEEcchhhhcc
Confidence 4678999999998875
No 355
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.82 E-value=0.028 Score=53.09 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=19.4
Q ss_pred ccccccCcccCCc-eEEEcCCCchHHHHHHHHHh
Q psy10020 11 EYYQNLGAKVPKG-ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 11 ~~l~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~ 43 (640)
.+++++++..+.. ++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 3556666666555 77999999999999999987
No 356
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.80 E-value=0.034 Score=53.63 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=25.4
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
+.|.||+||||||+++.||..++.+++.
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 5589999999999999999999988774
No 357
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.80 E-value=0.018 Score=59.09 Aligned_cols=147 Identities=10% Similarity=0.047 Sum_probs=77.9
Q ss_pred hhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccccccch
Q psy10020 289 SHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHA 368 (640)
Q Consensus 289 ~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~hEaGHa 368 (640)
+.|-....++..+..++...++++..+++ +++.....+.........+..++++|..+|++......+
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEi---d~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~--------- 156 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDEL---DSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF--------- 156 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECST---THHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEE---------
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEECh---HHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEE---------
Confidence 33334445567777888888889899999 443322111111011112234569999999886544433
Q ss_pred hhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEe------ccccchhhhhHHH
Q psy10020 369 LVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVL------SSLLTVNKFASLV 442 (640)
Q Consensus 369 l~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~------g~~ttGA~l~~n~ 442 (640)
+...+|+.+.++++.++|+ ++...+.+.+|+.. .+..++..+..... ....+.+ -...+|+++ .+.
T Consensus 157 -vi~atn~~~~ld~al~r~g-Rf~~~i~i~~p~~~---~r~~il~~~l~~~~--~~~~~~~~~la~~~~g~sg~dl-~~l 228 (301)
T 3cf0_A 157 -IIGATNRPDIIDPAILRPG-RLDQLIYIPLPDEK---SRVAILKANLRKSP--VAKDVDLEFLAKMTNGFSGADL-TEI 228 (301)
T ss_dssp -EEEEESCGGGSCGGGGSTT-SSCEEEECCCCCHH---HHHHHHHHHHTTSC--BCSSCCHHHHHHTCSSCCHHHH-HHH
T ss_pred -EEEecCCccccChHHhcCC-ccceEEecCCcCHH---HHHHHHHHHHccCC--CCccchHHHHHHHcCCCCHHHH-HHH
Confidence 3344577888888888885 55444444444422 23334333221111 1111211 123567887 666
Q ss_pred HHHHHHHHhchhh
Q psy10020 443 CRQVAFHESGHAL 455 (640)
Q Consensus 443 ~~~~A~~e~gha~ 455 (640)
++.+++.+.+..+
T Consensus 229 ~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 229 CQRACKLAIRESI 241 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
No 358
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.69 E-value=0.017 Score=59.78 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=21.3
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
++.+| +.|+||||+|||||+++|++..
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 44556 5599999999999999999844
No 359
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.62 E-value=0.044 Score=52.07 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=25.7
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecCc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGS 55 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~ 55 (640)
++++|++|||||+++..++.. +.+.+++.-.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 578999999999999999977 6677666543
No 360
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.58 E-value=0.032 Score=58.90 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.2
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.|+||||+|||||+++|++...
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEECCCCccHHHHHHHHhcccc
Confidence 55999999999999999998543
No 361
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.56 E-value=0.03 Score=62.17 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=23.7
Q ss_pred CcccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 17 GAKVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 17 ~l~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
+..+++| ++|+||||||||||++.+++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4467777 558999999999999999983
No 362
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.52 E-value=0.034 Score=51.05 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.2
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++|+|+||+|||||++.+++.
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999873
No 363
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.47 E-value=0.032 Score=55.15 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=24.4
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
+-|.|||||||||+++.|+..++.+.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 55899999999999999999887665543
No 364
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.45 E-value=0.035 Score=62.75 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=28.9
Q ss_pred eEEEcCCCchHHHHHHHHHhcc---CCCeEEecCchh
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA---NVPFLSMNGSEF 57 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~---~~~~i~v~~~~l 57 (640)
++|+|+|||||||+++.|+..+ +.+++.+++..+
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 6699999999999999999987 888888865443
No 365
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.42 E-value=0.034 Score=56.93 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.|.||+|||||||++.|++.++
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 55999999999999999998543
No 366
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.42 E-value=0.056 Score=56.55 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.1
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
.+++| ++|+||||||||+|+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46677 559999999999999999874
No 367
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.37 E-value=0.033 Score=52.07 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++|+|++|+|||||++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999873
No 368
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.34 E-value=0.039 Score=58.67 Aligned_cols=30 Identities=33% Similarity=0.744 Sum_probs=26.0
Q ss_pred ccCcccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 15 NLGAKVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 15 ~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++.+++.+| ++|+||||||||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 566777888 779999999999999999873
No 369
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.32 E-value=0.059 Score=60.52 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=23.1
Q ss_pred eEEEcCCCchHHHHHHHHHhc---cCCCeEEecC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE---ANVPFLSMNG 54 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~ 54 (640)
++|.|||||||||+++.++.. .+..++.+..
T Consensus 207 ~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 207 VVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 668999999999999998873 3444554433
No 370
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.17 E-value=0.033 Score=58.89 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=26.8
Q ss_pred ccccccCcccCCc-eEEEcCCCchHHHHHHHHHh
Q psy10020 11 EYYQNLGAKVPKG-ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 11 ~~l~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~ 43 (640)
..|.+..+++..| .+|+||+|+|||+++.+|.-
T Consensus 14 r~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 14 KSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp TTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4455667778888 45899999999999999985
No 371
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.16 E-value=0.038 Score=66.11 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=27.5
Q ss_pred cccccccCcccCC-------c--eEEEcCCCchHHHHHHHHHh
Q psy10020 10 PEYYQNLGAKVPK-------G--ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 10 ~~~l~~l~l~~~~-------G--iLL~Gp~GsGKTtL~r~la~ 43 (640)
..+++++++.++. | ++|+||||+||||++|.+ +
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-G 810 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-G 810 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-H
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-H
Confidence 4577888888765 5 569999999999999999 5
No 372
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.13 E-value=0.051 Score=56.34 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.5
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
.+++| ++|+||||+|||+|+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 34555 669999999999999999874
No 373
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.03 E-value=0.048 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=19.4
Q ss_pred ceEEEcCCCchHHHHHHHHHhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~ 44 (640)
-+.|.||+|||||||++.|.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 3669999999999999999874
No 374
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.94 E-value=0.034 Score=59.91 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=27.6
Q ss_pred cccccCcccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 12 YYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 12 ~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
.-+++++.+..+ +.|+|+||+|||||+++|++.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 345677778777 679999999999999999885
No 375
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.93 E-value=0.044 Score=56.34 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=20.8
Q ss_pred eEEEcCCCchHHHHHHHHHhccC--CCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN--VPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~--~~~i~v 52 (640)
+.|+||||+|||||+++|+ ... .+.+.+
T Consensus 168 ~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred EEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 4599999999999999999 543 344444
No 376
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.89 E-value=0.049 Score=50.66 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+++
T Consensus 10 i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 77999999999999999987
No 377
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.82 E-value=0.043 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.4
Q ss_pred CCceEEEcCCCchHHHHHHHHHh
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~ 43 (640)
..|++|.|+||+||||++..+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35699999999999999998876
No 378
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.73 E-value=0.14 Score=63.85 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=42.2
Q ss_pred CceEEEcCCCchHHHHHHHHHhc---cCCCeEEecCchhh----hhhcc---------------chhhhHhhhh-hhccc
Q psy10020 22 KGALLLGPPGCGKTLLAKAVATE---ANVPFLSMNGSEFI----EMIGG---------------LGAARVRTEV-VFLHC 78 (640)
Q Consensus 22 ~GiLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~~~l~----~~~~~---------------~~~~~l~~~f-~~~p~ 78 (640)
..++|+||||+|||||+..+|.. .+..++.++..... ....+ .....++... ...+.
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~ 812 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 812 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCC
Confidence 33779999999999999999873 33456666554322 11111 0011111111 25688
Q ss_pred ccccchhhhhcc
Q psy10020 79 RVFLHEITIFDL 90 (640)
Q Consensus 79 il~ideid~l~~ 90 (640)
++++|.+..+.+
T Consensus 813 lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 813 VIVVDSVAALTP 824 (1706)
T ss_dssp EEEESCSTTCCC
T ss_pred EEEEechhhhcc
Confidence 999999998875
No 379
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.68 E-value=0.064 Score=50.19 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.8
Q ss_pred ceEEEcCCCchHHHHHHHHHhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~ 44 (640)
.++++|++|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999863
No 380
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.66 E-value=0.052 Score=50.29 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.4
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++|+|+||+|||||++.+++.
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 779999999999999999874
No 381
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.64 E-value=0.045 Score=58.51 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=25.3
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEecC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNG 54 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~ 54 (640)
++|.||+|||||+|+..||..++..++..+.
T Consensus 5 i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred EEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 5689999999999999999987765555444
No 382
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=92.61 E-value=0.032 Score=61.82 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=30.7
Q ss_pred cccccccccCcccCCc-eEEEcCCCchHHHHHHHHHhcc
Q psy10020 8 KRPEYYQNLGAKVPKG-ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 8 ~~~~~l~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.+-..++++.+.+..| .+|+|+||+|||+|+.+|...+
T Consensus 46 ~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 46 RNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp ESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred ccccceeeEEEecCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4445677788888888 4489999999999999997644
No 383
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=92.60 E-value=0.029 Score=66.40 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=27.8
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHH
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVA 42 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la 42 (640)
..++++++.++.| +.|+|+||||||||++.|.
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3688999999999 4499999999999999853
No 384
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.57 E-value=0.047 Score=57.09 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=27.1
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
.+++++++...++ +.|+|+||+||||+++.|++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4555666666676 558999999999999999874
No 385
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.54 E-value=0.02 Score=58.67 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=17.2
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.|.||+||||||+++.|+..++
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 55899999999999999998554
No 386
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=92.52 E-value=0.019 Score=67.13 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=28.4
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHH-HHh
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKA-VAT 43 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~-la~ 43 (640)
..++++++++++| +.|+|+||||||||++. |++
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 3688999999999 44999999999999996 654
No 387
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.51 E-value=0.062 Score=57.95 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=23.0
Q ss_pred cccCC-c-eEEEcCCCchHHHHHHHHHhccC
Q psy10020 18 AKVPK-G-ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 18 l~~~~-G-iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.++. + .+|+|||||||||++++|+..++
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 44543 3 56999999999999999998554
No 388
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.27 E-value=0.067 Score=48.37 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78999999999999999987
No 389
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.25 E-value=0.059 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+.|.|++||||||++..|+..+
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 5699999999999999998743
No 390
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.23 E-value=0.059 Score=55.26 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.5
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
++|+||+|+||||++..||+.+
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999843
No 391
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.15 E-value=0.071 Score=47.92 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++++|++|+|||||++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999874
No 392
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=92.06 E-value=0.027 Score=66.36 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=27.7
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHHHHHH
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLAKAVA 42 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la 42 (640)
..+++++++++.| +.|+|+||||||||++.|.
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3688999999999 4489999999999999854
No 393
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.073 Score=49.77 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.9
Q ss_pred ceEEEcCCCchHHHHHHHHHhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~ 44 (640)
.++++|++|+|||||++.+.+.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999874
No 394
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.02 E-value=0.071 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.2
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999873
No 395
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.00 E-value=0.076 Score=47.80 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.7
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 396
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.91 E-value=0.075 Score=48.51 Aligned_cols=20 Identities=55% Similarity=0.782 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 7 i~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCccHHHHHHHHhc
Confidence 78999999999999999986
No 397
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.88 E-value=0.071 Score=55.20 Aligned_cols=83 Identities=8% Similarity=-0.023 Sum_probs=52.9
Q ss_pred hhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccc-cccchhcccccc
Q psy10020 288 QSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFAS-LVCRQVAFHESG 366 (640)
Q Consensus 288 l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~-~~~~~vA~hEaG 366 (640)
.+.|-....++..+..++...++++++||+ +++. +..........+..++++|.++|++.. ..+.
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEi---d~l~---~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v-------- 150 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEI---DSLC---GSRSENESEAARRIKTEFLVQMQGVGVDNDGI-------- 150 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETT---TGGG---CCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE--------
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecH---HHhc---cccccccchHHHHHHHHHHHHHhcccccCCCE--------
Confidence 334445566678888888888999999999 3332 222222223445667899999999864 2333
Q ss_pred chhhhcccCCCCcceEEEEe
Q psy10020 367 HALVGWLLPHTDALLKVTIV 386 (640)
Q Consensus 367 Hal~a~~l~~~d~l~~a~i~ 386 (640)
++..++|+++.++++.++
T Consensus 151 --~vI~atn~~~~ld~al~r 168 (322)
T 1xwi_A 151 --LVLGATNIPWVLDSAIRR 168 (322)
T ss_dssp --EEEEEESCTTTSCHHHHH
T ss_pred --EEEEecCCcccCCHHHHh
Confidence 333445777778876655
No 398
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.83 E-value=0.082 Score=47.62 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 7 i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 399
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.81 E-value=0.089 Score=48.93 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.8
Q ss_pred ceEEEcCCCchHHHHHHHHHhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~ 44 (640)
-++|+|++|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3889999999999999999874
No 400
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.80 E-value=0.079 Score=55.65 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=24.4
Q ss_pred ccccccCcccCCceEEEcCCCchHHHHHHHHHh
Q psy10020 11 EYYQNLGAKVPKGALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 11 ~~l~~l~l~~~~GiLL~Gp~GsGKTtL~r~la~ 43 (640)
..+.++++.+| -++++|++|+|||||+++|.+
T Consensus 25 ~~l~~i~~~lp-~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 25 SALPTLWDSLP-AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCC----CCCC-EEEEECBTTSSHHHHHHHHHT
T ss_pred cccccccccCC-EEEEECCCCCcHHHHHHHHhC
Confidence 35666677777 478999999999999999998
No 401
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.75 E-value=0.083 Score=47.86 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999987
No 402
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.74 E-value=0.084 Score=47.72 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=18.7
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 403
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.73 E-value=0.075 Score=51.90 Aligned_cols=35 Identities=34% Similarity=0.427 Sum_probs=24.2
Q ss_pred cCCc--eEEEcCCCchHHHHHHHHHh----ccCCCeEEecC
Q psy10020 20 VPKG--ALLLGPPGCGKTLLAKAVAT----EANVPFLSMNG 54 (640)
Q Consensus 20 ~~~G--iLL~Gp~GsGKTtL~r~la~----~~~~~~i~v~~ 54 (640)
+++| ++|.|+||+|||+|+-.++. ..+.+.+.++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5566 66999999999999987653 22445555543
No 404
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.71 E-value=0.065 Score=60.15 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=25.9
Q ss_pred eEEEcCCCchHHHHHHHHHhccC----CCeEEecCc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN----VPFLSMNGS 55 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~----~~~i~v~~~ 55 (640)
++|.|+|||||||+++.|+..++ .+++.+++.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 56899999999999999998765 556666543
No 405
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.68 E-value=0.068 Score=48.39 Aligned_cols=20 Identities=50% Similarity=0.851 Sum_probs=18.6
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78999999999999999976
No 406
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.67 E-value=0.086 Score=47.74 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++++|++|+|||||++.+.+.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 789999999999999999873
No 407
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.66 E-value=0.39 Score=53.50 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=27.9
Q ss_pred ccceeEEEeeccCCC--cccHHHHh----HhccCcccHHHHHHHH
Q psy10020 198 RELHIVKMETQLRAY--ESDKKLAR----KQLIDSVNREIAETIL 236 (640)
Q Consensus 198 ~~~viv~I~aTn~~~--~lD~al~r----~i~i~~P~~~i~~~~l 236 (640)
.-+|.+ |.+|.+|. .|+..++. +|.+.+.+..-.+.+|
T Consensus 376 a~GIhL-IlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 376 AAGIHL-ILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp TTTEEE-EEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred hCCeEE-EEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 458888 89999998 88888776 7777777744444444
No 408
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.62 E-value=0.1 Score=53.42 Aligned_cols=30 Identities=30% Similarity=0.210 Sum_probs=23.3
Q ss_pred cccCcccCCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 14 QNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 14 ~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+++++. +| +.++|++|+||||+++.||+.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555 44 5588999999999999999843
No 409
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.61 E-value=0.085 Score=47.89 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.5
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999999975
No 410
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.58 E-value=0.078 Score=52.07 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~ 51 (640)
+.|.|++||||||+++.||..++.+++.
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 5589999999999999999999877654
No 411
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.57 E-value=0.089 Score=48.17 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 412
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.53 E-value=0.086 Score=47.74 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 413
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.52 E-value=0.16 Score=49.88 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=21.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc---cCCCeEE
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE---ANVPFLS 51 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~---~~~~~i~ 51 (640)
+++.|++|+||||++-.+|.. .+..++.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v 39 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMA 39 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEE
Confidence 678999999999998877763 3445443
No 414
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.51 E-value=0.09 Score=47.68 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 415
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.50 E-value=0.083 Score=55.45 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.0
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
+.|+|+||+|||||++.|.+.
T Consensus 77 v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 559999999999999999973
No 416
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.44 E-value=0.093 Score=48.11 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999987
No 417
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.37 E-value=0.093 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.9
Q ss_pred ceEEEcCCCchHHHHHHHHHhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~ 44 (640)
.++|+|++|+|||||++.+.+.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999999974
No 418
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.33 E-value=0.099 Score=47.16 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 419
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.31 E-value=0.1 Score=57.78 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.3
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++|+|.|||||||+++.|+..++
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 66899999999999999998653
No 420
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.29 E-value=0.094 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.4
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++|+|++|+|||||++.|.+.
T Consensus 32 i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 779999999999999999973
No 421
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.22 E-value=0.1 Score=47.12 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 422
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.21 E-value=0.1 Score=47.73 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 11 i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 11 VTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EEEESCTTTTHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999986
No 423
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.17 E-value=0.087 Score=48.27 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 12 i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 424
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.14 E-value=0.11 Score=57.47 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=21.7
Q ss_pred eEEEcCCCchHHHHHHHHHhccCC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANV 47 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~ 47 (640)
++|.|.+||||||++++|+..++.
T Consensus 398 I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 398 IVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEecccCCCCHHHHHHHHHHHHHH
Confidence 668999999999999999998764
No 425
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.12 E-value=0.092 Score=52.70 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
+.|+|+||+|||||++.+.+.
T Consensus 6 i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 779999999999999999873
No 426
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.12 E-value=0.11 Score=47.62 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||+|++.+.+
T Consensus 9 i~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 427
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.09 E-value=0.095 Score=53.72 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.2
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
+.|+|+||+|||||++.|.+.
T Consensus 11 VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 11 IAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 669999999999999999973
No 428
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.04 E-value=0.14 Score=49.98 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.7
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVP 48 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~ 48 (640)
+++.|++||||||+++.|+..++..
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhccc
Confidence 5588999999999999999977653
No 429
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.02 E-value=0.11 Score=48.16 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=19.3
Q ss_pred ceEEEcCCCchHHHHHHHHHh
Q psy10020 23 GALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~ 43 (640)
.++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999986
No 430
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.98 E-value=0.068 Score=53.38 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
++|.|++||||||+++.|+..+.
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999998773
No 431
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.94 E-value=0.11 Score=46.75 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=18.6
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||+|++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999999976
No 432
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.93 E-value=0.12 Score=50.39 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=23.5
Q ss_pred eEEEcCCCchHHHHHHHHHhccCCCeEEe
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEANVPFLSM 52 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~~~~i~v 52 (640)
+.|+|..||||||+++.++. ++.+++..
T Consensus 12 iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 66999999999999999987 66666554
No 433
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.92 E-value=0.15 Score=50.00 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.8
Q ss_pred eEEEcCCCchHHHHHHHHHhccC
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEAN 46 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~~ 46 (640)
+.|.|++||||||+++.|+..+.
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 66899999999999999998774
No 434
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.91 E-value=0.11 Score=47.65 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++++|++|+|||||++.+.+.
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999874
No 435
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.89 E-value=0.12 Score=47.00 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 10 i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999976
No 436
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.87 E-value=0.11 Score=47.91 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 7 i~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999987
No 437
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=90.85 E-value=0.12 Score=55.27 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=21.3
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHh
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~ 43 (640)
.+++| +.|+|+||+|||||+++|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34455 56999999999999999998
No 438
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.84 E-value=0.11 Score=47.46 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 17 i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 439
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.84 E-value=0.096 Score=54.02 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=21.3
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHhc
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~~ 44 (640)
-+++| ++|+||||+|||+|+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556 569999999999999998863
No 440
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.83 E-value=0.11 Score=48.29 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.4
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++++|++|+|||||++.+.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999873
No 441
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.82 E-value=0.082 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=17.9
Q ss_pred CCc--eEEEcCCCchHHHHHHHHHhcc
Q psy10020 21 PKG--ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 21 ~~G--iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.+| ++|.||+||||||+++.|+..+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456 5588999999999999999854
No 442
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=90.79 E-value=0.075 Score=62.15 Aligned_cols=29 Identities=31% Similarity=0.609 Sum_probs=25.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHH
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLA 38 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~ 38 (640)
..-++++++++|++ ++++|+||||||||+
T Consensus 23 ~hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 23 QHNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp STTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred ccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 35689999999999 558999999999988
No 443
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.75 E-value=0.12 Score=47.18 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=19.0
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 18 i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999987
No 444
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.73 E-value=0.11 Score=48.25 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999987
No 445
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.73 E-value=0.12 Score=48.32 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=19.0
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78999999999999999987
No 446
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.70 E-value=0.12 Score=48.08 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++++|++|+|||||++.+.+.
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 789999999999999999873
No 447
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.69 E-value=0.12 Score=47.52 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 21 i~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999999986
No 448
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.61 E-value=0.11 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
++|.|++||||||+++.|+..+
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 4588999999999999998854
No 449
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.60 E-value=0.12 Score=47.94 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.7
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
++|+|++|+|||+|++.+.+..
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999998743
No 450
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=90.53 E-value=0.086 Score=62.21 Aligned_cols=28 Identities=29% Similarity=0.578 Sum_probs=24.8
Q ss_pred ccccccCcccCCc--eEEEcCCCchHHHHH
Q psy10020 11 EYYQNLGAKVPKG--ALLLGPPGCGKTLLA 38 (640)
Q Consensus 11 ~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~ 38 (640)
..++++++.++.| +.|+||||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 4688999999999 449999999999997
No 451
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.51 E-value=0.13 Score=47.27 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 15 i~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 452
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.50 E-value=0.1 Score=56.65 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=28.1
Q ss_pred cccCcccCCc--eEEEcCCCchHHHHHHHHHhcc----CCCeEEecC
Q psy10020 14 QNLGAKVPKG--ALLLGPPGCGKTLLAKAVATEA----NVPFLSMNG 54 (640)
Q Consensus 14 ~~l~l~~~~G--iLL~Gp~GsGKTtL~r~la~~~----~~~~i~v~~ 54 (640)
+.+...+++| ++|.|+||+|||||+..++... +.+++.++.
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3333346677 6689999999999999998732 334555543
No 453
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.49 E-value=0.1 Score=48.56 Aligned_cols=21 Identities=52% Similarity=0.664 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++++|++|+|||||++.+.+.
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999863
No 454
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.49 E-value=0.13 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.2
Q ss_pred ccCCc--eEEEcCCCchHHHHHHHHHh
Q psy10020 19 KVPKG--ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 19 ~~~~G--iLL~Gp~GsGKTtL~r~la~ 43 (640)
-+++| ++|.|+||+|||+|+..+|.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45666 66899999999999999886
No 455
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.40 E-value=0.26 Score=52.14 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=25.4
Q ss_pred CCceEEEcCCCchHHHHHHHHHhc---cCCCeEEecC
Q psy10020 21 PKGALLLGPPGCGKTLLAKAVATE---ANVPFLSMNG 54 (640)
Q Consensus 21 ~~GiLL~Gp~GsGKTtL~r~la~~---~~~~~i~v~~ 54 (640)
...++++||+|+|||++++.++.. .+..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 345889999999999999999873 3445555543
No 456
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.40 E-value=0.13 Score=47.62 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 13 i~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 457
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.38 E-value=0.14 Score=47.04 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 13 i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999999987
No 458
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.34 E-value=0.13 Score=47.84 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 10 i~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999987
No 459
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=90.24 E-value=0.083 Score=62.33 Aligned_cols=29 Identities=31% Similarity=0.600 Sum_probs=25.9
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHH
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLA 38 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~ 38 (640)
..-++++++++|++ ++++|+||||||+|+
T Consensus 11 ~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 11 VHNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp STTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 35789999999999 558999999999988
No 460
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.10 E-value=0.15 Score=47.60 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 25 i~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999987
No 461
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.05 E-value=0.15 Score=47.04 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 21 i~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 462
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=90.02 E-value=0.091 Score=62.17 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=25.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHH
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLA 38 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~ 38 (640)
..-++++++++|++ ++++|+||||||+|+
T Consensus 33 ~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 33 EHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred ccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 35689999999999 558999999999987
No 463
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.01 E-value=0.15 Score=47.73 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=18.1
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 23 i~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 77999999999999987776
No 464
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.00 E-value=0.15 Score=47.53 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=19.0
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 19 i~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78999999999999999987
No 465
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.99 E-value=0.15 Score=46.89 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=18.7
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 8 i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 466
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.94 E-value=0.14 Score=49.15 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=19.8
Q ss_pred ceEEEcCCCchHHHHHHHHHhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~ 44 (640)
-++|+|++|+|||||++.+.+.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3889999999999999999874
No 467
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=89.91 E-value=0.093 Score=61.90 Aligned_cols=29 Identities=34% Similarity=0.694 Sum_probs=25.6
Q ss_pred cccccccCcccCCc--eEEEcCCCchHHHHH
Q psy10020 10 PEYYQNLGAKVPKG--ALLLGPPGCGKTLLA 38 (640)
Q Consensus 10 ~~~l~~l~l~~~~G--iLL~Gp~GsGKTtL~ 38 (640)
..-++++++++|++ ++++|+||||||+|+
T Consensus 31 ~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 35689999999999 558999999999987
No 468
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.90 E-value=0.15 Score=47.88 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 17 i~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 469
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.85 E-value=0.044 Score=54.29 Aligned_cols=148 Identities=9% Similarity=0.051 Sum_probs=75.1
Q ss_pred chhhhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhcccccccccccchhccc
Q psy10020 284 SNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFH 363 (640)
Q Consensus 284 di~~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~~~~~vA~h 363 (640)
++...+.+.++..+...+..++...++++..+++ +.+...............+..++++|.+++|+.....
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Dei---d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~------ 154 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEI---DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA------ 154 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETH---HHHHC---------CHHHHHHHHHHHHHHHTCCTTCC------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhh---hhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC------
Confidence 3333334444555667777777667777778888 4443221110000111224567799999998865332
Q ss_pred cccchhhhcccCCCCcceEEEEecCCCCccceEEEcCCccccCCHHHHhhhhhhhccccccceEEe---ccc---cchhh
Q psy10020 364 ESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDTSRSHRVLRKWVL---SSL---LTVNK 437 (640)
Q Consensus 364 EaGHal~a~~l~~~d~l~~a~i~P~g~~~~g~~~~l~~~~~~~t~~~l~~~i~~~l~G~aAE~ii~---g~~---ttGA~ 437 (640)
+++..++++++.++++.++|+ ++..-+.+..|+. ..|..++..+...+ ...+++.+ ... .+|++
T Consensus 155 ----~i~~a~t~~p~~ld~~l~r~~-rf~~~i~i~~p~~---~~r~~il~~~~~~~--~~~~~~~~~~la~~~~G~~~~d 224 (254)
T 1ixz_A 155 ----IVVMAATNRPDILDPALLRPG-RFDRQIAIDAPDV---KGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGAD 224 (254)
T ss_dssp ----EEEEEEESCGGGSCGGGGSTT-SSCEEEECCSCCH---HHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHH
T ss_pred ----EEEEEccCCchhCCHHHcCCC-cCCeEEeeCCcCH---HHHHHHHHHHHcCC--CCCcccCHHHHHHHcCCCCHHH
Confidence 245556678888998888885 4443333333332 23444444332111 11222222 222 34567
Q ss_pred hhHHHHHHHHHHHh
Q psy10020 438 FASLVCRQVAFHES 451 (640)
Q Consensus 438 l~~n~~~~~A~~e~ 451 (640)
+ .+.++.+++.+.
T Consensus 225 l-~~~~~~a~~~a~ 237 (254)
T 1ixz_A 225 L-ENLLNEAALLAA 237 (254)
T ss_dssp H-HHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHH
Confidence 7 566666665544
No 470
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.78 E-value=0.15 Score=47.25 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||||++.+.+
T Consensus 21 i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 21 LLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 471
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.74 E-value=0.16 Score=47.85 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.3
Q ss_pred ceEEEcCCCchHHHHHHHHHh
Q psy10020 23 GALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~ 43 (640)
.++|+|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999987
No 472
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.72 E-value=0.16 Score=47.87 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++|+|++|+|||||++.+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 789999999999999999873
No 473
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.69 E-value=0.052 Score=55.40 Aligned_cols=90 Identities=6% Similarity=-0.191 Sum_probs=39.2
Q ss_pred HHHHHHHHHHH----hccCcccccccccchhhhhhccCCCCCCccchhhhHhhhhhhccccccccc--ccchhccccccc
Q psy10020 294 QEIYDDILNLK----LNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASL--VCRQVAFHESGH 367 (640)
Q Consensus 294 a~~~~a~~~~a----r~~~~~ii~~~di~~~~ai~~~~~g~~~~~~~~~~~~~~qlL~~~d~f~~~--~~~~vA~hEaGH 367 (640)
...++.++..+ +...++++.++|+ +++..-..+... ....++...+.||..+|+.... ..... ..+...
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEi---D~~~~~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~-~~~~~~ 155 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDL---DAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYN-KQENAR 155 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECC---C---------------CHHHHHHHHHHHHHCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEech---hhhcCCCCCCcc-ccchHHHHHHHHHHHhccccccccccccc-cccCCC
Confidence 33344445444 6778899899999 332211111111 0011222334566666533210 00000 011223
Q ss_pred hhhhcccCCCCcceEEEEecC
Q psy10020 368 ALVGWLLPHTDALLKVTIVPR 388 (640)
Q Consensus 368 al~a~~l~~~d~l~~a~i~P~ 388 (640)
.++...+|+.+.++++.++|+
T Consensus 156 v~vI~ttN~~~~ld~al~R~~ 176 (293)
T 3t15_A 156 VPIIVTGNDFSTLYAPLIRDG 176 (293)
T ss_dssp CCEEEECSSCCC--CHHHHHH
T ss_pred cEEEEecCCcccCCHHHhCCC
Confidence 455566688888999988885
No 474
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.69 E-value=0.13 Score=50.92 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
++|.|++||||||+++.|+..+
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5588999999999999998854
No 475
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.68 E-value=0.15 Score=47.71 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 26 i~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 476
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.68 E-value=0.16 Score=47.57 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
++|+|++|+|||||++.+.+.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 889999999999999999873
No 477
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.62 E-value=0.22 Score=53.65 Aligned_cols=31 Identities=29% Similarity=0.234 Sum_probs=23.2
Q ss_pred cccCcccCCc-eEEEcCCCchHHHHHHHHHhcc
Q psy10020 14 QNLGAKVPKG-ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 14 ~~l~l~~~~G-iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
.++++. +.. ++++||+|+||||++..||+.+
T Consensus 91 ~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCCC-SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccCC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555 332 5588999999999999999843
No 478
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.60 E-value=0.17 Score=46.44 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=19.2
Q ss_pred ceEEEcCCCchHHHHHHHHHh
Q psy10020 23 GALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~ 43 (640)
.++++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 388999999999999999986
No 479
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.59 E-value=0.17 Score=47.17 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 23 i~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 480
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.57 E-value=0.1 Score=48.16 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.9
Q ss_pred ceEEEcCCCchHHHHHHHHHh
Q psy10020 23 GALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~ 43 (640)
.++++|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 388999999999999999874
No 481
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.57 E-value=0.15 Score=51.43 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.3
Q ss_pred eEEEcCCCchHHHHHHHHHhc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~ 44 (640)
+.|+|+||+|||||++.+.+.
T Consensus 6 I~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 6 IALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 679999999999999999873
No 482
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.56 E-value=0.14 Score=46.91 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||+|++.+.+
T Consensus 10 i~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999987
No 483
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.47 E-value=0.16 Score=48.73 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred eEEEcCCCchHHHHHHHHHhcc
Q psy10020 24 ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
++|+|++|+|||||+..++...
T Consensus 33 i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 33 VNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7799999999999999998754
No 484
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.46 E-value=0.18 Score=46.93 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 18 i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999987
No 485
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.45 E-value=0.13 Score=52.70 Aligned_cols=30 Identities=27% Similarity=0.163 Sum_probs=22.4
Q ss_pred cCcccCCc-eEEEcCCCchHHHHHHHHHhcc
Q psy10020 16 LGAKVPKG-ALLLGPPGCGKTLLAKAVATEA 45 (640)
Q Consensus 16 l~l~~~~G-iLL~Gp~GsGKTtL~r~la~~~ 45 (640)
+++..+.. ++++|++|+||||++..||..+
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44544422 5588999999999999999743
No 486
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.45 E-value=0.18 Score=47.18 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78999999999999999987
No 487
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.44 E-value=0.17 Score=46.59 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=18.7
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 9 i~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78999999999999999985
No 488
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.44 E-value=0.18 Score=47.11 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||+|++.+.+
T Consensus 25 i~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 489
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.43 E-value=0.17 Score=47.43 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.3
Q ss_pred ceEEEcCCCchHHHHHHHHHh
Q psy10020 23 GALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~ 43 (640)
.++|+|++|+|||||++.+.+
T Consensus 30 ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999999987
No 490
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.38 E-value=0.17 Score=47.33 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 11 i~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHc
Confidence 78999999999999999987
No 491
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.36 E-value=0.17 Score=47.82 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=19.0
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 27 i~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999987
No 492
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.32 E-value=0.18 Score=47.12 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=18.6
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||+|++.+.+
T Consensus 24 i~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78999999999999998886
No 493
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.31 E-value=0.18 Score=47.14 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=19.0
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 26 i~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78999999999999999987
No 494
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.28 E-value=0.17 Score=47.83 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999987
No 495
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.23 E-value=0.19 Score=47.43 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.6
Q ss_pred ceEEEcCCCchHHHHHHHHHhc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATE 44 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~ 44 (640)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3889999999999999999863
No 496
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.21 E-value=0.19 Score=47.20 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=18.6
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++++|++|+|||+|++.+.+
T Consensus 32 i~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 32 ILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEESTTSSHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999999975
No 497
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.15 E-value=0.19 Score=47.61 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 23 i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 498
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=89.13 E-value=0.6 Score=50.58 Aligned_cols=88 Identities=15% Similarity=-0.012 Sum_probs=52.7
Q ss_pred CCcccHHHHh---HhccCcccHHHHHHHHHhhhhhhhhhhcccccccccccccCCCCcchhcHHHHHhhC-CCCCccchh
Q psy10020 211 AYESDKKLAR---KQLIDSVNREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFL-PQTSTASNV 286 (640)
Q Consensus 211 ~~~lD~al~r---~i~i~~P~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LA~~t-~G~sgadi~ 286 (640)
++.|+|.++. .+.|+.|+.+.+..+| +..... . ...++ +-.+..++..+ .| +.....
T Consensus 347 ~~~l~~~i~sR~~~~~~~~~~~~e~~~iL-~~~~~~--~--------------~~~~~-~~~~~~i~~~a~~g-~~r~a~ 407 (456)
T 2c9o_A 347 PHGIPLDLLDRVMIIRTMLYTPQEMKQII-KIRAQT--E--------------GINIS-EEALNHLGEIGTKT-TLRYSV 407 (456)
T ss_dssp ETTCCHHHHTTEEEEECCCCCHHHHHHHH-HHHHHH--H--------------TCCBC-HHHHHHHHHHHHHS-CHHHHH
T ss_pred cccCChhHHhhcceeeCCCCCHHHHHHHH-HHHHHH--h--------------CCCCC-HHHHHHHHHHccCC-CHHHHH
Confidence 8889999988 7788888866666666 332210 0 01111 22456777776 55 566666
Q ss_pred hhhhcchHHHHHHHHHHHhccCcccccccccchhhhhhccC
Q psy10020 287 NQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGS 327 (640)
Q Consensus 287 ~l~~~~~a~~~~a~~~~ar~~~~~ii~~~di~~~~ai~~~~ 327 (640)
.++. .+...+..++...| +.+++ ..++..++
T Consensus 408 ~ll~-------~a~~~A~~~~~~~v-~~~~v--~~~~~~~~ 438 (456)
T 2c9o_A 408 QLLT-------PANLLAKINGKDSI-EKEHV--EEISELFY 438 (456)
T ss_dssp HTHH-------HHHHHHHHTTCSSB-CHHHH--HHHHHHSC
T ss_pred HHHH-------HHHHHHhhcCCCcc-CHHHH--HHHHHHhc
Confidence 6666 44344444455555 99999 66665443
No 499
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.11 E-value=0.14 Score=48.51 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.4
Q ss_pred eEEEcCCCchHHHHHHHHHh
Q psy10020 24 ALLLGPPGCGKTLLAKAVAT 43 (640)
Q Consensus 24 iLL~Gp~GsGKTtL~r~la~ 43 (640)
++|+|++|+|||||++.+.+
T Consensus 26 i~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEECSTTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 77999999999999999865
No 500
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.05 E-value=0.32 Score=47.78 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=25.9
Q ss_pred ceEEEcCCCchHHHHHHHHHhccCCCeEEecCc
Q psy10020 23 GALLLGPPGCGKTLLAKAVATEANVPFLSMNGS 55 (640)
Q Consensus 23 GiLL~Gp~GsGKTtL~r~la~~~~~~~i~v~~~ 55 (640)
..++.||+|+|||.++-.++...+...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 378999999999999988887666666665544
Done!