RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10020
(640 letters)
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 139 bits (353), Expect = 1e-37
Identities = 58/70 (82%), Positives = 63/70 (90%)
Query: 1 MEFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
EFVDYLK PE + LGAKVPKGALLLGPPGCGKTLLAKAVATEA VPFL+M G+EF+E+
Sbjct: 19 REFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV 78
Query: 61 IGGLGAARVR 70
IGGLGAARVR
Sbjct: 79 IGGLGAARVR 88
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 128 bits (324), Expect = 1e-33
Identities = 52/70 (74%), Positives = 58/70 (82%)
Query: 1 MEFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
+E VD+LK PE Y NLGAK+PKG LL+GPPG GKTLLAKAVA EA+VPF SM GS FIEM
Sbjct: 24 VEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83
Query: 61 IGGLGAARVR 70
GLGA+RVR
Sbjct: 84 FVGLGASRVR 93
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 124 bits (314), Expect = 2e-32
Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 8/90 (8%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
E V+YL+ P +Q LG K+PKG L++GPPG GKTLLAKA+A EA VPF +++GS+F+EM
Sbjct: 26 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85
Query: 62 GGLGAARVRTEVVFLH------CRVFLHEI 85
G+GA+RVR +F C +F+ EI
Sbjct: 86 VGVGASRVRD--MFEQAKKAAPCIIFIDEI 113
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 123 bits (311), Expect = 6e-32
Identities = 47/90 (52%), Positives = 63/90 (70%), Gaps = 8/90 (8%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
E V++LK P + +GA++PKG LL+GPPG GKT LA+AVA EA VPF++ +GS+F+EM
Sbjct: 30 EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89
Query: 62 GGLGAARVRTEVVFLH------CRVFLHEI 85
G+GAARVR +F C VF+ EI
Sbjct: 90 VGVGAARVRD--LFETAKRHAPCIVFIDEI 117
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 123 bits (312), Expect = 6e-32
Identities = 47/90 (52%), Positives = 63/90 (70%), Gaps = 8/90 (8%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
E V++LK P + +GA++PKG LL+GPPG GKT LA+AVA EA VPF++ +GS+F+EM
Sbjct: 54 EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113
Query: 62 GGLGAARVRTEVVFLH------CRVFLHEI 85
G+GAARVR +F C VF+ EI
Sbjct: 114 VGVGAARVRD--LFETAKRHAPCIVFIDEI 141
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 127 bits (321), Expect = 1e-31
Identities = 42/69 (60%), Positives = 56/69 (81%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
E V++LK P + +GA++PKG LL+GPPG GKTLLA+AVA EANVPF ++GS+F+E+
Sbjct: 30 EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89
Query: 62 GGLGAARVR 70
G+GAARVR
Sbjct: 90 VGVGAARVR 98
Score = 75.3 bits (186), Expect = 2e-14
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 494 KEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEETLD 550
K +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K L ++ E LD
Sbjct: 272 KRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLD 329
Score = 74.1 bits (183), Expect = 4e-14
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 358 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEEIFSPI 415
R +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K L ++ E+ +
Sbjct: 273 RIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKL 331
Score = 71.8 bits (177), Expect = 2e-13
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 444 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEE 496
R +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K L ++ E
Sbjct: 273 RIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNE 326
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 126 bits (320), Expect = 3e-31
Identities = 41/69 (59%), Positives = 55/69 (79%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
E V++LK P + +GA++PKG LL+GPPG GKT LA+AVA EA VPF++ +GS+F+EM
Sbjct: 45 EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104
Query: 62 GGLGAARVR 70
G+GAARVR
Sbjct: 105 VGVGAARVR 113
Score = 70.7 bits (174), Expect = 5e-13
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 494 KEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEETLD 550
+ A+HE+GHAL L H D + KVTIVPR ALGF + ++++ LD
Sbjct: 287 RRITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGFMMPRREDMLHWSRKRLLD 342
Score = 69.5 bits (171), Expect = 1e-12
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 358 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPI 415
R A+HE+GHAL L H D + KVTIVPR ALGF + ++++ + I
Sbjct: 288 RITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGFMMPRREDMLHWSRKRLLDQI 344
Score = 67.6 bits (166), Expect = 5e-12
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 444 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEE 496
R A+HE+GHAL L H D + KVTIVPR ALGF + ++++
Sbjct: 288 RITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGFMMPRREDMLHWSRKR 339
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 92.7 bits (231), Expect = 6e-21
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
LK PE ++ +G + PKG LL GPPG GKTLLAKAVATE N F+ + GSE ++ G GA
Sbjct: 37 LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96
Query: 67 ARVR 70
+ V+
Sbjct: 97 SLVK 100
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 88.5 bits (220), Expect = 2e-19
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 1 MEFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
E V Y ++ P+ + G KG L GPPGCGKTLLAKA+A E F+S+ G E +
Sbjct: 28 QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87
Query: 60 MIGGLGAARVRTEVVFLH------CRVFLHEI 85
M G A VR +F C +F E+
Sbjct: 88 MWFGESEANVRE--IFDKARQAAPCVLFFDEL 117
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 88.7 bits (220), Expect = 9e-19
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 1 MEFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
E V+ L+ P ++ +G K P+G LL GPPG GKTL+A+AVA E F +NG E +
Sbjct: 217 KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276
Query: 60 MIGGLGAARVRTEVVFL------HCRVFLHEI 85
+ G + +R F +F+ E+
Sbjct: 277 KLAGESESNLRK--AFEEAEKNAPAIIFIDEL 306
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 85.7 bits (213), Expect = 1e-18
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 1 MEFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
+ ++ P+ ++ LG P G LL GPPGCGKTLLAKAVA E+ + F+S+ G E +
Sbjct: 23 TMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82
Query: 60 MIGGLGAARVRTEVVFL------HCRVFLHEI 85
M G VR VF C +F E+
Sbjct: 83 MYVGESERAVRQ--VFQRAKNSAPCVIFFDEV 112
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 89.1 bits (221), Expect = 1e-18
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 1 MEFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
E V Y ++ P+ + G KG L GPPGCGKTLLAKA+A E F+S+ G E +
Sbjct: 490 QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549
Query: 60 MIGGLGAARVRTEVVFLHCR------VFLHEI 85
M G A VR +F R +F E+
Sbjct: 550 MWFGESEANVRE--IFDKARQAAPCVLFFDEL 579
Score = 78.7 bits (194), Expect = 2e-15
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MEFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
E V+ L+ P ++ +G K P+G LL GPPG GKTL+A+AVA E F +NG E +
Sbjct: 217 KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276
Query: 60 MIGGLGAARVR 70
+ G + +R
Sbjct: 277 KLAGESESNLR 287
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 82.6 bits (203), Expect = 2e-16
Identities = 90/530 (16%), Positives = 175/530 (33%), Gaps = 134/530 (25%)
Query: 3 FVDY-LKRPEYYQNL-----GAKVPKGALLLGPPGCGKTLLAKAVA----TEANVPF--- 49
F Y + R + Y L + K L+ G G GKT +A V + + F
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 50 -LSMN----GSEFIEMIGGL---------------GAARVRTEVVFLHCRVFLHE----- 84
L++ +EM+ L ++R + R L
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 85 --ITIFDLETKIIENIFDLETKIILSS---FMMIVLKLNLEKEVML---RKKLEEEYSIE 136
+ + +++ N F+L KI+L++ + L + L L +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 137 LGRKLQDMEIKHAEELKKQEQCLRKEKVLK-IDAELR-HKKELDLERQILLHEITK-LKS 193
L K D ++L + E + L I +R D + + ++T ++S
Sbjct: 306 LLLKYLDCRP---QDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 194 ELKNRELHIVKMETQLRAYESDKKLARKQLI--DSVNREIAETILLKNFAHQLIVKCPLM 251
L E + + ++ L+ + S + I TILL +I ++
Sbjct: 362 SLNVLEPAEYR-----KMFDR---LS----VFPPSAH--I-PTILLSLIWFDVIKSDVMV 406
Query: 252 MTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEV 311
+ +N + +++KQ P+ ST S I L LK+ LE E
Sbjct: 407 V---------VNKLHKYSLVEKQ---PKESTIS-----------IPSIYLELKVKLENEY 443
Query: 312 MLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHALVG 371
L + + + Y+I + L F S + H
Sbjct: 444 ALHRSIVDHYNI-----------PKTFDSDDLIPPYLDQYFYS----HIGHH-------- 480
Query: 372 WLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKL----YNKEEIFSPIDTSRSHRVLRKW 427
L + + ++T+ L F + QK+ S ++T + + + +
Sbjct: 481 --LKNIEHPERMTLFRMVFLDFRFLE-----QKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 428 VLSSLLTVNKFASLVCRQVAF-HESGHALVGWLLPHTDALLKVTIVPRTS 476
+ + K+ LV + F + L+ +TD LL++ ++
Sbjct: 534 ICDN---DPKYERLVNAILDFLPKIEENLI--CSKYTD-LLRIALMAEDE 577
Score = 72.2 bits (176), Expect = 3e-13
Identities = 96/675 (14%), Positives = 186/675 (27%), Gaps = 227/675 (33%)
Query: 76 LHCR----VFLHEITIFDLETKIIE----NIF-DLETKIILSS----------------- 109
+ VF + + + K ++ +I E I+ S
Sbjct: 16 YQYKDILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 110 -------FMMIVLKLN-------LEKEVMLRKKLEEEYSIELGRKLQDMEI--------- 146
F+ VL++N ++ E + Y + R D ++
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 147 -------KHAEELKKQE------------QCL-----RKEKVLK--------IDAELRHK 174
+ EL+ + + KV ++ + +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 175 KELDLER-QILLHEITK----LKSELKNRELHIVKMETQLRAYESDKKLARKQLI-DSV- 227
E LE Q LL++I N +L I ++ +LR K L+ +V
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 228 NREIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVN 287
N + F + C +++T T
Sbjct: 255 NAKA-----WNAFN----LSCKILLT--------------------------TRFKQ--- 276
Query: 288 QSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWV---LS 344
+ D + L + L L K++
Sbjct: 277 --------VTDFLSAATTTHISLDHHSMTLTPDEVKSL------------LLKYLDCRPQ 316
Query: 345 SL----LTVNKFA-SLVCRQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYT 399
L LT N S++ + + W + D L + +
Sbjct: 317 DLPREVLTTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTTI-------IESSLNVLE 367
Query: 400 PSE-QKLYNKEEIFSPIDTSRSHRVL-RKWVLSS----LLTVNKFA--SLVCRQVAFHES 451
P+E +K++++ +F P +L W ++ VNK SLV +Q
Sbjct: 368 PAEYRKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 452 G-HALVGWLLPHTDALLKV--TIVPRTSLALGFAQYTPSEQKL--YNKEEVAFHESGHAL 506
++ L + + +IV ++ F L Y + H
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH------ 480
Query: 507 VGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEETLDPKKEMTVNREQPPSHD 566
L + + ++T+ L F + QK+
Sbjct: 481 ----LKNIEHPERMTLFRMVFLDFRFLE-----QKI------------------------ 507
Query: 567 KKKRKCLTEISVTTMVLSSLNRREK-EDRIGESQPFRERTLSHQDKIRPGRESNPRPSAY 625
R T + + +L++L + + + I ++ P ER ++ P E N S Y
Sbjct: 508 ---RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 626 KAVALPTKLTRLAIS 640
T L R+A+
Sbjct: 565 ------TDLLRIALM 573
Score = 62.2 bits (150), Expect = 3e-10
Identities = 49/257 (19%), Positives = 82/257 (31%), Gaps = 55/257 (21%)
Query: 294 QEIYDDIL-----NLKLNLE-KEV--MLRKKL-EEEYSIELGSPIDTSRSHRVLRKWVLS 344
Q Y DIL N + K+V M + L +EE + S S + R+ W L
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--WTL- 71
Query: 345 SLLTVNKFASLVCRQVAFHESGHAL-VGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQ 403
++K +V + F E + +L+ + P ++ Y
Sbjct: 72 ----LSKQEEMVQK---FVEEVLRINYKFLM---SPIKTEQRQP----SMMTRMYIEQRD 117
Query: 404 KLYNKEEIFSPIDTSRSHRV--LRKWVLSSLLTVNKF--------------ASLVCRQVA 447
+LYN ++F+ + SR LR+ +L L K A VC
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 448 FHESGHALVGWL----LPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESG 503
+ WL + +L+ L S + ++ H
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 504 HALVGWLL--PHTDALL 518
L L P+ + LL
Sbjct: 232 AELRRLLKSKPYENCLL 248
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 78.3 bits (193), Expect = 4e-16
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 11 EYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVR 70
+ + KVP + G G GK+ + V + + + M+ E G A +R
Sbjct: 26 NFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIR 85
Query: 71 TEVVFLH----------CRVFLHEI 85
+ C +F++++
Sbjct: 86 Q--RYREAAEIIRKGNMCCLFINDL 108
>2di4_A Zinc protease, cell division protein FTSH homolog;
metalloproteinase, hexamer-ring, hydrolase; 2.79A
{Aquifex aeolicus} SCOP: a.269.1.1
Length = 238
Score = 74.2 bits (183), Expect = 5e-15
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 494 KEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEETLD 550
KE++A HE+GHAL+G + D + K++I+PR ALG Q P E K +Y+K++ +
Sbjct: 16 KEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGM-ALGVTQQLPIEDKHIYDKKDLYN 72
Score = 73.8 bits (182), Expect = 6e-15
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 358 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEEIFSPI 415
++A HE+GHAL+G + D + K++I+PR ALG Q P E K +Y+K+++++ I
Sbjct: 17 EKIAIHEAGHALMGLVSDDDDKVHKISIIPRGM-ALGVTQQLPIEDKHIYDKKDLYNKI 74
Score = 71.1 bits (175), Expect = 5e-14
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 444 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQK-LYNKEE 496
++A HE+GHAL+G + D + K++I+PR ALG Q P E K +Y+K++
Sbjct: 17 EKIAIHEAGHALMGLVSDDDDKVHKISIIPRGM-ALGVTQQLPIEDKHIYDKKD 69
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 72.5 bits (178), Expect = 3e-14
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 6 YLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLG 65
+++ + LL GPP GKT LA +A E+N PF+ + + +
Sbjct: 52 LVQQTKNSDRTP---LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108
Query: 66 AARVRTEV 73
+ ++
Sbjct: 109 KCQAMKKI 116
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 71.9 bits (177), Expect = 6e-14
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSE 56
RPE + L KG LL GPPG GKTLLA+AVATE + FL+++ +
Sbjct: 41 SVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 72.4 bits (178), Expect = 6e-14
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 1 MEFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
E V +K P ++ K G LL GPPG GK+ LAKAVATEAN F S++ S+ +
Sbjct: 31 KEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89
Query: 60 MIGGLGAARVRTEVVFLHCR------VFLHEI 85
G V+ +F R +F+ ++
Sbjct: 90 KWMGESEKLVKQ--LFAMARENKPSIIFIDQV 119
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 71.3 bits (175), Expect = 2e-13
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSE 56
+ RP+ + L PKG LL GPPG GKTL+ K +A+++ F S++ S
Sbjct: 104 MLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 71.0 bits (174), Expect = 2e-13
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSE 56
RPE + L +G LL GPPG GKT+LAKAVA E+N F +++ +
Sbjct: 135 SLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 68.9 bits (169), Expect = 7e-13
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 1 MEFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVP-FLSMNGSEFI 58
E V +K P + +G LL GPPG GK+ LAKAVATEAN F S++ S+ +
Sbjct: 25 KEAVILPIKFPHLFTGKR-TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83
Query: 59 EMIGGLGAARVRTEVVFLHCR------VFLHEI 85
G V+ +F R +F+ EI
Sbjct: 84 SKWLGESEKLVKN--LFQLARENKPSIIFIDEI 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 5e-11
Identities = 86/484 (17%), Positives = 140/484 (28%), Gaps = 141/484 (29%)
Query: 249 PLMMTYSSEEGRNLNIPASFKMMKKQ---NF---LPQTSTASNVNQSHNIPQEIYDDILN 302
PL +++ S E L +P + + Q F LP+ + + P E+ L
Sbjct: 8 PLTLSHGSLE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 303 LKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAF 362
Y L P + +VL L + +F
Sbjct: 67 ------------------YVSSLVEPSKVGQFDQVLN-------LCLTEFE----NCYLE 97
Query: 363 HESGHALVGWLLPHTDA-LLKVTIVPRT---SLALG---FAQYTPS---------EQKLY 406
HAL LL D L+K + + + + F + + S +L
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 407 -------NKEEIFSPI----DTSRSHRVLRKWVLSSLLTVNKFASLVCRQVAFHESGHAL 455
N ++ F + T + + S T+++ G +
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 456 VGWL-----LPHTDALLKVTI-VPRTSLALGFAQYTPSEQKL-YNKEEVAFHESG----- 503
+ WL P D LL + I P + + A Y + + L + E+ + G
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGV-IQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 504 HALV---------GW--LLPHTDALLKV---------TIVPRTSLALGFAQYTPSEQKLY 543
LV W + V P TSL + + L
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS-----LE 329
Query: 544 NKEETLDPKKEM-TV---NREQPPSHDKKKRKCLTE-----ISV----TTMVLS------ 584
N E P M ++ +EQ + K L IS+ +V+S
Sbjct: 330 NNEGVPSP---MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 585 -SLNR--REKEDRIGESQ---PFRERTLSHQDKIRPGRESNP--RP--SAYKAVALPTKL 634
LN R+ + G Q PF ER K++ P P S A
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSER------KLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 635 TRLA 638
L
Sbjct: 441 KDLV 444
Score = 49.3 bits (117), Expect = 4e-06
Identities = 61/358 (17%), Positives = 105/358 (29%), Gaps = 132/358 (36%)
Query: 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVF---LHCRV 80
+ L G G + L+ AVA + + F + R V+F + C
Sbjct: 265 SYLKGATGHSQGLVT-AVAIAE-----TDSWESFFV------SVRKAITVLFFIGVRC-- 310
Query: 81 FLHEIT-IFDLETKIIENIFDLETKIILSSFMMIVLKLN---LEKEV-MLRKKLEEEYSI 135
+E L I+E+ LE + S M+ + L ++ V L +
Sbjct: 311 --YEAYPNTSLPPSILED--SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 136 EL------------GRKLQDMEIKHAEELKKQEQCLRKEKVL-KIDAELRHKKELDLERQ 182
E+ G + L LRK K +D + + ER
Sbjct: 367 EISLVNGAKNLVVSG---------PPQSLYGLNLTLRKAKAPSGLD---QSRIPFS-ER- 412
Query: 183 ILLHEITKLKSELKNREL------HIVKMETQLRAYESDKKLARKQLIDSVNREIAETIL 236
K + NR L H S L+ + I + ++
Sbjct: 413 ---------KLKFSNRFLPVASPFH------------SH-------LLVPASDLINKDLV 444
Query: 237 LKNF---AHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQSHNIP 293
N A + + P+ Y + +G +L + S +I
Sbjct: 445 KNNVSFNAKDI--QIPV---YDTFDGSDL-----------RVL------------SGSIS 476
Query: 294 QEIYDDILNLKLNLEKEVMLRKKLEEEYSIELGSPIDTSRSHRVLRKWVLSSLLTVNK 351
+ I D I+ L + E + + + ++ G P S L L NK
Sbjct: 477 ERIVDCIIRLPVKWETTT----QFKATHILDFG-PGGASG---------LGVLTHRNK 520
Score = 32.7 bits (74), Expect = 0.44
Identities = 43/297 (14%), Positives = 78/297 (26%), Gaps = 103/297 (34%)
Query: 30 PGCGKTL-----LAKAVATEANVPFLSMNGSEFIEMI-----------GGLGAARVRTEV 73
G G L A+ V A+ F G ++++ GG R+R
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 74 VFLHCRVFLHEITIFDLETKIIENIFDLETKIILSS---------F----MMIVLKLNLE 120
+ + + KI + I + T S F + ++
Sbjct: 1689 SAMIFETIVDGKLKTE---KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM------ 1739
Query: 121 KEVMLRKKLEE----------------EYS--------------IEL----GRKLQDMEI 146
E + L+ EY+ +E+ G +Q
Sbjct: 1740 -EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ---- 1794
Query: 147 KHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIV--K 204
+ + E ++ I+ R E L + + + + IV
Sbjct: 1795 ---VAVPRDELGRSNYGMIAINPG-RVAASFSQEA---LQYVVERVGKRTGWLVEIVNYN 1847
Query: 205 METQLRAYESDKKLARKQLI---DSVNREIAETILLKNFAHQLIVKCPLMMTYSSEE 258
+E Q Q + D + +L Q I L + S EE
Sbjct: 1848 VENQ-------------QYVAAGDLRALDTVTNVL-NFIKLQKIDIIELQKSLSLEE 1890
Score = 31.9 bits (72), Expect = 0.78
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 31/95 (32%)
Query: 198 RELHIVKMETQLRAYES--DKKLARKQLIDSVNREI--------AETILLKNFAHQLIVK 247
RE + M +E+ D KL +++ +N + F Q
Sbjct: 1685 RENYS-AM-----IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-Q---- 1733
Query: 248 CPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTST 282
P + A+F+ +K + +P +T
Sbjct: 1734 -PALTLMEK---------AAFEDLKSKGLIPADAT 1758
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 61.4 bits (149), Expect = 3e-10
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA 66
+K P ++ K G LL GPPG GK+ LAKAVATEAN F S++ S+ + G
Sbjct: 71 VKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 129
Query: 67 ARVRTEVVFLHCR------VFLHEI 85
V+ +F R +F+ ++
Sbjct: 130 KLVK--QLFAMARENKPSIIFIDQV 152
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 56.1 bits (135), Expect = 2e-08
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVP-FLSMNGSEFIEMIGGLG 65
+K P + +G LL GPPG GK+ LAKAVATEAN F S++ S+ + G
Sbjct: 154 IKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES 212
Query: 66 AARVRTEVVFLHCR------VFLHEI 85
V+ +F R +F+ EI
Sbjct: 213 EKLVKN--LFQLARENKPSIIFIDEI 236
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 52.3 bits (125), Expect = 3e-07
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATE--ANVPFLSMNGSEFIE 59
V+ +K + + LL GPPG GKT LA A+A E + VPF M GSE
Sbjct: 51 VIVELIKSKKMA-------GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103
Query: 60 M 60
Sbjct: 104 T 104
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 45.6 bits (108), Expect = 4e-05
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 17 GAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGS 55
G+ V + A+L GPPG GKT A VA E L N S
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 43.9 bits (104), Expect = 2e-04
Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 117 LNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKV---LKIDAELRH 173
K ++ + + K +E + E KK L + + KID + +
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943
Query: 174 KKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLARKQLIDSVNREIAE 233
K L + L + +L++ + E + + + +++ I + +E+ +
Sbjct: 944 YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE-IAKLRKELHQ 1002
Score = 40.1 bits (94), Expect = 0.002
Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 9/150 (6%)
Query: 93 KIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIE---LGRKLQDMEIKHA 149
+ + LE KI+ + + + LE YS E L ++ + +
Sbjct: 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE 977
Query: 150 EELKKQEQCLRKEKVLK-----IDAELRHKKELDLERQILLHEITKLKSELKNRELHIVK 204
E + L ++ + + KK ++ HE +L SELK + +
Sbjct: 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037
Query: 205 METQL-RAYESDKKLARKQLIDSVNREIAE 233
+ +L R K + + + E +
Sbjct: 1038 EKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Score = 35.1 bits (81), Expect = 0.076
Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 23/149 (15%)
Query: 119 LEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQE----QCL-------RKEKVLKI 167
+ L E SI + + ++ + + QC R+ K LKI
Sbjct: 852 YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI 911
Query: 168 DAE-LRHKKEL--DLERQI---------LLHEITKLKSELKNRELHIVKMETQLRAYESD 215
+A + K+L LE +I E L ++ N E+ +LR+
Sbjct: 912 EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971
Query: 216 KKLARKQLIDSVNREIAETILLKNFAHQL 244
+++ ++ ++ NR ++ + +L
Sbjct: 972 LRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 43.3 bits (103), Expect = 2e-04
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPF 49
LL+GP G GKTLLA+ +A +VPF
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPF 79
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 43.0 bits (102), Expect = 2e-04
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPF 49
LL+GP G GKTL+A+ +A ++P
Sbjct: 76 LLIGPTGSGKTLMAQTLAKHLDIPI 100
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 42.0 bits (98), Expect = 4e-04
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 10/79 (12%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGAL---LLGPPGCGKTLLAKAVATE-------ANVPFLS 51
E L Q LG L G PG GKT +A +A +S
Sbjct: 45 ETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVS 104
Query: 52 MNGSEFIEMIGGLGAARVR 70
+ + + G A + +
Sbjct: 105 VTRDDLVGQYIGHTAPKTK 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 39.7 bits (92), Expect = 0.001
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
LL G PG GK+ +A+A+A VP + + + I
Sbjct: 13 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI 49
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 40.2 bits (95), Expect = 0.002
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 28 GPPGCGKTLLAKAVATEANVPFLSMN 53
GPPG GKT LA+ +A AN ++
Sbjct: 57 GPPGTGKTTLAEVIARYANADVERIS 82
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 38.7 bits (91), Expect = 0.003
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 22/83 (26%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVP-----FLSMNGSE--FIEMIGGLGAARVRTEVVFLH 77
L GPPG GKT A A+A + F+ MN S+ I++ VR ++
Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV--------VRHKI---- 89
Query: 78 CRVFLHEITIFDLETKIIENIFD 100
+ F I KII D
Sbjct: 90 -KEFARTAPIGGAPFKII--FLD 109
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.004
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 192 KSELKNRELHIVKMETQLRAYESDK--KLARKQLID 225
K LK K++ L+ Y D LA K ++
Sbjct: 19 KQALK-------KLQASLKLYADDSAPALAIKATME 47
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 37.7 bits (88), Expect = 0.004
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 11 EYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEA 45
+ N + KG +G PG GKT LA A
Sbjct: 28 VFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 39.0 bits (91), Expect = 0.006
Identities = 21/107 (19%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 121 KEVMLRKKLEEEYSIELGRKLQDME--IKHAEELKK--QEQCLRKEKVLKIDAELRHKKE 176
+ +K+ EE E+ ++++ E + + KK Q+Q L E+ +++ E +++
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE--QLEEEEAARQK 973
Query: 177 LDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLARKQL 223
L LE+ +I K++ ++ E K+ + + E L
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Score = 35.2 bits (81), Expect = 0.080
Identities = 30/216 (13%), Positives = 77/216 (35%), Gaps = 23/216 (10%)
Query: 119 LEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLK---------IDA 169
++ +KK++++ ++L +L++ E + ++ K K ++ +
Sbjct: 943 SQQLQAEKKKMQQQ-MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 170 ELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLARKQLIDSVNR 229
+ +K L+ L + + + + KN K E+ + E K K +
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 230 EIAETILLKNFAHQLIVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTASNVNQS 289
+ + L + + + + A +++ +Q
Sbjct: 1062 -------KRKLEGESSD---LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111
Query: 290 HNIPQEIYD---DILNLKLNLEKEVMLRKKLEEEYS 322
+N ++I + I +L+ +LE E R K E++
Sbjct: 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 36.5 bits (84), Expect = 0.012
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 19/164 (11%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHE 84
LL G PG GKT L K +A+++ + ++++ + E ++
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINVG--DLAR------------EEQLYDGYDEEYD 60
Query: 85 ITIFDLET--KIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQ 142
I D + ++N I+ + +LR Y R
Sbjct: 61 CPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYN 120
Query: 143 DMEIK---HAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQI 183
+ ++ E + + +I +L K +LE +
Sbjct: 121 EKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNV 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 36.9 bits (86), Expect = 0.013
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 22/83 (26%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVP-----FLSMNGSE--FIEMIGGLGAARVRTEVVFLH 77
L GPPG GKT A A+A + F+ MN S+ I++ VR ++
Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV--------VRHKI---- 89
Query: 78 CRVFLHEITIFDLETKIIENIFD 100
+ F I KII D
Sbjct: 90 -KEFARTAPIGGAPFKII--FLD 109
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 37.1 bits (86), Expect = 0.015
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 11 EYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATE 44
++ + + KG L G G GK+ L A+A E
Sbjct: 142 DFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 36.1 bits (83), Expect = 0.016
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLS 51
++ G P GKT L++A+AT +P LS
Sbjct: 9 IVTGHPATGKTTLSQALATGLRLPLLS 35
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 35.9 bits (82), Expect = 0.016
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
+L G GK+ + + + + P+L+ IE +
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM 43
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 35.8 bits (83), Expect = 0.017
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFL 50
L GP C K+ +A ++ E P +
Sbjct: 6 LEGPDCCFKSTVAAKLSKELKYPII 30
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.033
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 130 EEEYSIELGRKLQDMEIKH-AEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEI 188
+E SI R+ Q ++ K EQ R++ ++ + + E ++
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE----------QV 131
Query: 189 TKLKSELKNRE 199
K K + +
Sbjct: 132 EKNKINNRIAD 142
Score = 33.6 bits (76), Expect = 0.12
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 116 KLNLEKEVMLRKKLEEEYSIEL-------GRKLQDMEIKHAEELKKQEQCLRKEKVLKID 168
+L E E + +K EE L Q+ K ++L++ Q + E+V K
Sbjct: 79 RLTQEPESI--RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ-RQSEQVEKNK 135
Query: 169 AELRHKKE 176
R +
Sbjct: 136 INNRIADK 143
Score = 31.3 bits (70), Expect = 0.61
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 120 EKEVMLRKKLEEEYSIELGRK-LQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELD 178
E + + +E E +K L++ + +E+++K + R D + + D
Sbjct: 100 ELDAASKVMEQEW--REKAKKDLEEWNQRQSEQVEKNKINNRIA-----DKAFYQQPDAD 152
Query: 179 L 179
+
Sbjct: 153 I 153
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 36.1 bits (84), Expect = 0.036
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
L GP G GKT + ++ + L + SE++E
Sbjct: 492 LFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 35.6 bits (83), Expect = 0.036
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPF 49
LL GPPG GKT LA +A E V
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNL 66
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker
B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 35.6 bits (83), Expect = 0.041
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPF 49
LL GPPG GKT LA +A+E
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNI 79
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 35.2 bits (82), Expect = 0.047
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPF 49
L GP G GKT LA ++ E +
Sbjct: 59 LFSGPAGLGKTTLANIISYEMSANI 83
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman
fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 35.5 bits (82), Expect = 0.053
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 25 LLLGPPGCGKTLLAKAVA 42
LLGPPG K+L+A+ +
Sbjct: 45 FLLGPPGIAKSLIARRLK 62
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 34.5 bits (79), Expect = 0.056
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGG 63
++ GP G GK+ K +A + + G M+ G
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYI-EGDIINHMVVG 43
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 34.7 bits (80), Expect = 0.057
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 19 KVPKGALLLGPPGCGKTLLAKAVATEA 45
K KG L G G GKT L A+A E
Sbjct: 52 KKMKGLYLHGSFGVGKTYLLAAIANEL 78
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 34.8 bits (79), Expect = 0.062
Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 8/124 (6%)
Query: 73 VVFLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEE 132
+ H FL + D ET I T LS + + +E + + +
Sbjct: 92 NLVTHLDSFLPICRVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYK 151
Query: 133 YSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEITKLK 192
S + ++L + +L++ E+ ++D + + L H+++K++
Sbjct: 152 SSADKMQQLNAAHQEALMKLERLEK--------EVDEDTTVTIPSAVYVAQLYHQVSKIE 203
Query: 193 SELK 196
E +
Sbjct: 204 WEYE 207
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 34.6 bits (80), Expect = 0.083
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 22/83 (26%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVP-----FLSMNGSE--FIEMIGGLGAARVRTEVVFLH 77
L GPPG GKT A A+A E FL +N S+ I + +R +V
Sbjct: 50 LFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV--------IREKV---- 97
Query: 78 CRVFLHEITIFDLETKIIENIFD 100
+ F I KII D
Sbjct: 98 -KEFARTKPIGGASFKII--FLD 117
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 33.9 bits (77), Expect = 0.085
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMN----GSEFIEMIGGLG 65
+ +++G G GKT +A VA E + F + M G+
Sbjct: 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIP 77
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 34.4 bits (79), Expect = 0.092
Identities = 17/133 (12%), Positives = 40/133 (30%), Gaps = 8/133 (6%)
Query: 93 KIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEEL 152
+ + + ++ + ++ E E L E + + +K L
Sbjct: 150 ETVAKLLGID---EFEKCYQKMGEIVKEYEKRLE---RIEGELNYKEESLKARLKEMSNL 203
Query: 153 KKQEQCLRK--EKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLR 210
+K+++ L K E + K+ R+ + I K +E + +
Sbjct: 204 EKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTK 263
Query: 211 AYESDKKLARKQL 223
+E L
Sbjct: 264 DFEVRVHAPNGVL 276
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 35.0 bits (81), Expect = 0.096
Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 116 KLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAE---ELKKQE-QCLRKEKVLKIDAEL 171
K V L + + KL+++E E + L L
Sbjct: 892 NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 951
Query: 172 RHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYE 213
+ + + + T +KS + + ++ +L+ E
Sbjct: 952 GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 993
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 34.2 bits (79), Expect = 0.12
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 25 LLLGP-PGCGKTLLAKAVATEANVPFLSMNGSE 56
+L P PG GKT +AKA+ + N + +NGS+
Sbjct: 51 ILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 33.1 bits (75), Expect = 0.16
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 19 KVPKGALLLGPPGCGKTLLAKAVATEANVPFL 50
+ P +++G G GK+ + +A+A PF+
Sbjct: 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 33.4 bits (77), Expect = 0.17
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 20 VPKGALLLGPPGCGKTLLAKAVATEANVPF 49
PK L++GP G GKT +A+ +A AN PF
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPF 78
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 33.3 bits (77), Expect = 0.19
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 4 VDYLKRPEYYQNLGAKVPKGAL--LLGPPGCGKTLLAKAVA 42
Y +Q L + KG + +LG GCGK+ L +
Sbjct: 12 FYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL 52
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 33.9 bits (78), Expect = 0.19
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 16 LGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLS 51
A + LL+G PG GK++L +A+A L
Sbjct: 55 TAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLE 90
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 33.6 bits (76), Expect = 0.20
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 5/113 (4%)
Query: 109 SFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKID 168
S E L+KK EE + + + ELK+ E+ L ++
Sbjct: 319 SLQETYEAKRNEFLGELQKKEEE-----MRQMFVQRVKEKEAELKEAEKELHEKFDRLKK 373
Query: 169 AELRHKKELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLARK 221
KK+L+ +++ L E+ K EL + + + +K
Sbjct: 374 LHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 32.5 bits (75), Expect = 0.23
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 31/93 (33%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEI 85
L+G G GK+ LA+ + + L + I GL +
Sbjct: 12 LIGFMGSGKSSLAQELGLALKLEVLDTD--MIISERVGL-------------------SV 50
Query: 86 -TIF---------DLETKIIENIFDLETKIILS 108
IF E +I+ + L+T ++S
Sbjct: 51 REIFEELGEDNFRMFEKNLIDELKTLKTPHVIS 83
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 33.3 bits (77), Expect = 0.23
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 25 LLLGPPGCGKTLLAKAVA-----TEANVPFLSMNGSEFIE 59
L LGP G GKT LAK +A TE + + M +E++E
Sbjct: 51 LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM--TEYME 88
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain
binding, HIP1 coiled-coil domain, endocytosis, clathrin
SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Length = 107
Score = 31.0 bits (69), Expect = 0.34
Identities = 16/93 (17%), Positives = 34/93 (36%)
Query: 124 MLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQI 183
+LRK E + + R+ Q + +EL+ + + + K +L + L E
Sbjct: 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELAT 65
Query: 184 LLHEITKLKSELKNRELHIVKMETQLRAYESDK 216
E+ L+ L+ + E ++
Sbjct: 66 SQRELQVLQGSLETSAQSEANWAAEFAELEKER 98
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 31.4 bits (72), Expect = 0.44
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFL 50
++G GCG T + + +A F+
Sbjct: 7 MVGARGCGMTTVGRELARALGYEFV 31
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 32.4 bits (74), Expect = 0.45
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 23 GALLLGPPGCGKTLLAKAVA 42
G L+ G G GK+ +A+A
Sbjct: 47 GVLVFGDRGTGKSTAVRALA 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 32.3 bits (73), Expect = 0.52
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATE 44
P + G G GKT + K V ++
Sbjct: 45 PNNIFIYGLTGTGKTAVVKFVLSK 68
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 32.4 bits (73), Expect = 0.57
Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELG 138
R+ +H++T+ L+ KI++ F + + ++ K +L E E
Sbjct: 453 RLNVHKVTVLTLQDKIVKEKFAMVAPDV---------QIEDGKGTILISSEEGETEANNH 503
Query: 139 RKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNR 198
+KL + I++ L+ + ++ I K+++ E E K
Sbjct: 504 KKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQAEDAA 563
Query: 199 E 199
+
Sbjct: 564 K 564
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 32.1 bits (74), Expect = 0.58
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 25 LLLGPPGCGKTLLAKAVA-----TEANVPFLSMNGSEFIE 59
L LGP G GKT LAK +A TE + + M +E++E
Sbjct: 592 LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM--TEYME 629
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 31.4 bits (72), Expect = 0.58
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFL 50
L+G PG GK+ + + +A V L
Sbjct: 7 LVGLPGSGKSTIGRRLAKALGVGLL 31
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 32.1 bits (72), Expect = 0.59
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGS---EFIEMIGGLGAARVRTEVVFLHCRVF 81
L+ G PGCGKT + L G + V
Sbjct: 165 LVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFL 224
Query: 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVML 125
++ + K + D E ++ + + +++++L +
Sbjct: 225 MNYGKGARCQFKRL--FID-EGLMLHTGCVNFLVEMSLCDIAYV 265
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 31.0 bits (71), Expect = 0.73
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFL 50
+G G GK+ LA+A+A + ++ FL
Sbjct: 9 FIGFMGSGKSTLARALAKDLDLVFL 33
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.8 bits (72), Expect = 0.73
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 16 LGAKVPKGA--LLLGPPGCGKTLLAKAVATEA 45
G K + L G G GKTLL A
Sbjct: 274 CGGGFFKDSIILATGATGTGKTLLVSRFVENA 305
Score = 30.3 bits (68), Expect = 2.2
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 16 LGAKVPKGALLL--GPPGCGKTLLA 38
+P G L G G GKTL +
Sbjct: 32 SHGGLPIGRSTLVSGTSGTGKTLFS 56
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 31.6 bits (72), Expect = 0.75
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 22/83 (26%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVP-----FLSMNGSE--FIEMIGGLGAARVRTEVVFLH 77
L GPPG GKT A+A E L +N S+ I++ VR ++
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDV--------VRNQI---- 97
Query: 78 CRVFLHEITIFDLETKIIENIFD 100
+ F IF K+I I D
Sbjct: 98 -KDFASTRQIFSKGFKLI--ILD 117
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 31.5 bits (70), Expect = 0.77
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 17 GAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF 57
+ P LL G PG GKT L A+ E + ++ F
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 31.1 bits (71), Expect = 0.86
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFL 50
L G G GKT L KA A + NVPF+
Sbjct: 30 LTGYMGAGKTTLGKAFARKLNVPFI 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 31.8 bits (73), Expect = 0.89
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 25 LLLGPPGCGKTLLAKAVA 42
+ LGP G GKT LA+A+A
Sbjct: 525 IFLGPTGVGKTELARALA 542
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 31.7 bits (73), Expect = 0.91
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFLSM 52
L GPPG GKT LAK++A F+ +
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRI 139
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 30.6 bits (70), Expect = 0.94
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFL 50
L+G G GKT + +A
Sbjct: 10 LIGLMGAGKTSVGSQLAKLTKRILY 34
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 31.3 bits (70), Expect = 1.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATE 44
L LG G GKT ++K + E
Sbjct: 45 KFSNLFLGLTGTGKTFVSKYIFNE 68
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 30.5 bits (68), Expect = 1.0
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
L+ G PG GKT +A+ +A E + F + + ++
Sbjct: 14 LITGTPGTGKTSMAEMIAAELD-GFQHLEVGKLVK 47
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 30.7 bits (70), Expect = 1.0
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 20 VPKGA--LLLGPPGCGKTLLA 38
+P+G L G PG GKT+ +
Sbjct: 20 IPQGFFIALTGEPGTGKTIFS 40
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 30.2 bits (69), Expect = 1.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFL 50
L+G GK+ + ++ N+PF
Sbjct: 5 LIGFMCSGKSTVGSLLSRSLNIPFY 29
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 30.2 bits (69), Expect = 1.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFL 50
L+GP G GK+ + + +A + N+ F
Sbjct: 9 LVGPMGAGKSTIGRQLAQQLNMEFY 33
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 31.0 bits (71), Expect = 1.2
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 20 VPKGAL--LLGPPGCGKTLLAKAVA 42
+ G + ++G GCGKT L + +A
Sbjct: 27 LDPGEILFIIGASGCGKTTLLRCLA 51
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.8 bits (70), Expect = 1.3
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 20 VPKGALLL--GPPGCGKTLLA 38
+P+ ++L G PG GKT+ +
Sbjct: 20 IPERNVVLLSGGPGTGKTIFS 40
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 30.6 bits (68), Expect = 1.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEF 57
P LL G G GKT + + E + ++G F
Sbjct: 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A*
1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E*
1hqy_E* 1ht1_E* 1ht2_E*
Length = 444
Score = 30.8 bits (70), Expect = 1.7
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 20 VPKGALLLGPPGCGKTLLAKAVATEANVPFL 50
PK L++GP G GKT +A+ +A AN PF+
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 79
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.0 bits (70), Expect = 1.7
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 9 RPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAV 41
R + + +L GPPG GKT+ +
Sbjct: 1292 RHVDVLHAWLSEHRPLILCGPPGSGKTMTLTST 1324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 29.6 bits (66), Expect = 1.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFL 50
+L+G G GK+ +A VA + + FL
Sbjct: 12 VLMGVSGSGKSAVASEVAHQLHAAFL 37
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 30.1 bits (68), Expect = 2.0
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVP-----FLSMNGSE--FIEMI 61
++ G PG GKT +A E L +N S+ I+++
Sbjct: 46 IISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 29.9 bits (67), Expect = 2.3
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 20 VPKGALLL--GPPGCGKTLLA 38
P+G +L G G GKT A
Sbjct: 27 FPEGTTVLLTGGTGTGKTTFA 47
>1dnv_A Galleria mellonella densovirus capsid protein; parvovirus, viral
capsid, icosahedral virus; 3.60A {Galleria mellonella
densovirus} SCOP: b.121.5.3
Length = 437
Score = 30.3 bits (67), Expect = 2.3
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 46 NVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRV 80
L MN SEF + G +V+F R+
Sbjct: 79 QKLPLYMNQSEFDLLPPGSRVVECNVKVIFRTNRI 113
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 29.9 bits (68), Expect = 2.3
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 20 VPKGAL--LLGPPGCGKT 35
+ +G + LLGP G GKT
Sbjct: 38 IREGEMVGLLGPSGSGKT 55
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 30.1 bits (68), Expect = 2.3
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 11 EYYQNLGAKVPKG----ALLL-GPPGCGKTLLAKAVA 42
++ L A G ALL+ PG G L A++
Sbjct: 9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 29.8 bits (68), Expect = 2.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPF 49
LL G PG KTL +A ++ F
Sbjct: 50 LLEGVPGLAKTLSVNTLAKTMDLDF 74
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 29.5 bits (67), Expect = 2.5
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLS 51
++ G P GK + + T+ + +S
Sbjct: 9 MISGAPASGKGTQCELIKTKYQLAHIS 35
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 29.9 bits (67), Expect = 2.5
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 16 LGAKVPKGAL--LLGPPGCGKTLLAKAVATEANVP 48
LG + A+ G GKT L+ + A +P
Sbjct: 115 LGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP 149
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 29.2 bits (65), Expect = 2.6
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLH 77
++ G PG GKT L K + + E + R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK---RTGFRIITTE 53
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU
sensitivity of transcription elongation II; 1.70A
{Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Length = 282
Score = 29.8 bits (66), Expect = 2.8
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 86 TIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDME 145
++ T I DL + I F LKL+ E +L +EY + + + +
Sbjct: 67 CLYKSST----RIHDLMQQSI-LRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGLVMFHK 121
Query: 146 IKHAEELKKQEQCLRKEKVLKID 168
+ E + + L + +LK D
Sbjct: 122 VNALEYNRLVDDSLPLQDILKPD 144
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 29.6 bits (66), Expect = 3.0
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 20 VPK--GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSE 56
+PK L GP GKT LA A+ L++N
Sbjct: 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL 204
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 29.4 bits (67), Expect = 3.0
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 17 GAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLS 51
G +L+G PG GK + + E + LS
Sbjct: 1 GNSKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 29.1 bits (66), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51
A+LLGPPG GK A +A V L+
Sbjct: 19 AVLLGPPGAGKGTQAPKLAKNFCVCHLA 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 29.2 bits (66), Expect = 3.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 26 LLGPPGCGKTLLAKAVA 42
+LGP G GKT L +A++
Sbjct: 35 ILGPNGSGKTTLLRAIS 51
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella
oneidensis}
Length = 172
Score = 28.6 bits (65), Expect = 3.7
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 91 ETKIIENIFDLETKIILSSFM-----MIVLKLNLEKEVMLRKKLEEEYS 134
E +++N+F L+ + I SS M ++ L LNL + LR ++ +S
Sbjct: 29 EHAMVKNVFRLDERTI-SSLMVPRSDIVFLDLNLPLDANLRTVMQSPHS 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 29.4 bits (65), Expect = 3.7
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATE----ANVPFLSMNGSEF 57
A LLG PG GKT+ + + F+ +NG +
Sbjct: 44 YPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 29.0 bits (65), Expect = 4.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFL 50
L+G G GKT + K +A F
Sbjct: 53 LVGMMGSGKTTVGKIMARSLGYTFF 77
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein;
membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP:
c.37.1.12
Length = 240
Score = 29.1 bits (66), Expect = 4.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 26 LLGPPGCGKTLLAKAVA 42
LLGP G GK++ + +A
Sbjct: 29 LLGPTGAGKSVFLELIA 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 29.1 bits (65), Expect = 4.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 25 LLLGPPGCGKTLLAKAVATEAN--VPFLSMNGSE 56
L+ G PG GKT +A +A PF ++ GSE
Sbjct: 74 LIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 28.7 bits (65), Expect = 4.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51
A+++G PG GK ++ + T + LS
Sbjct: 10 AVIMGAPGSGKGTVSSRITTHFELKHLS 37
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 29.3 bits (65), Expect = 4.6
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIG 62
++ G + AV NV L+ + +++
Sbjct: 124 VVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVP 160
Score = 28.1 bits (62), Expect = 8.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLS 51
+L+G PG GK+ +A+ + N + +
Sbjct: 28 ILVGSPGSGKSTIAEELCQIINEKYHT 54
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics; 1.80A {Thermus thermophilus}
Length = 186
Score = 28.6 bits (65), Expect = 4.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLS 51
+ LGPPG GK A +A E LS
Sbjct: 8 IFLGPPGAGKGTQASRLAQELGFKKLS 34
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.9 bits (64), Expect = 4.9
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 20 VPKGALLL-GPPGCGKTLL----AKAVAT 43
V L P G GK++L A +A
Sbjct: 28 VAGTVGALVSPGGAGKSMLALQLAAQIAG 56
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 29.1 bits (66), Expect = 4.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 26 LLGPPGCGKTLL 37
+LGP G GKTL
Sbjct: 31 ILGPTGAGKTLF 42
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 29.4 bits (66), Expect = 5.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 26 LLGPPGCGKTLLAKAVA 42
+ G GCGK++LA
Sbjct: 152 IYGMAGCGKSVLAAEAV 168
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A*
2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A*
1zip_A* 1s3g_A*
Length = 216
Score = 28.7 bits (65), Expect = 5.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLS 51
+L+G PG GK + + + +P +S
Sbjct: 4 VLMGLPGAGKGTQGERIVEKYGIPHIS 30
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 28.8 bits (65), Expect = 5.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 4 VDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLS 51
VD Y+Q++ +K+ + A++LGPPG GK + + +A + LS
Sbjct: 11 VDLGTENLYFQSMASKLLR-AVILGPPGSGKGTVCQRIAQNFGLQHLS 57
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 28.8 bits (64), Expect = 5.3
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 16 LGAKVPKGAL--LLGPPGCGKTLLAKAVATEANVP 48
LG + A+ + G G GKT LA +A +P
Sbjct: 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP 158
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 29.4 bits (66), Expect = 5.3
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 86 TIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDME 145
T+ DL +E + I+L I+ + +EK +L + E
Sbjct: 114 TLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPP 173
Query: 146 ----IKHAEELKKQEQCLRKEKVLKIDAE--LRHKKELDLERQILLHEITKLKSELKNRE 199
+ E + Q L V ++D R + + +E + + L
Sbjct: 174 GVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYV----KKERAGLRLPLAA 229
Query: 200 L 200
Sbjct: 230 W 230
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 28.5 bits (63), Expect = 5.4
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 28 GPPGCGKTLLAKAVATEANVPFLS 51
G G ++ K +A E + F
Sbjct: 21 REYGSGGRIVGKKLAEELGIHFYD 44
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 28.7 bits (65), Expect = 5.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51
+L+GPPG GK A + + L+
Sbjct: 7 MVLIGPPGAGKGTQAPNLQERFHAAHLA 34
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 28.4 bits (64), Expect = 5.4
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLS 51
L+ GP G GK V + ++ +
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIE 30
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 28.7 bits (65), Expect = 5.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51
+LLG PG GK A + + +P +S
Sbjct: 11 LILLGAPGAGKGTQANFIKEKFGIPQIS 38
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 28.7 bits (65), Expect = 5.5
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51
+ LG PG GK + + LS
Sbjct: 32 YIFLGAPGSGKGTQSLNLKKSHCYCHLS 59
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.9 bits (62), Expect = 5.7
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 115 LKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHK 174
LK LEK RK+LEE+ +E + ++ E+ DAE R
Sbjct: 25 LKEALEKSEARRKELEEKMV------------SLLQEKNDLQLQVQAEQDNLADAEERCD 72
Query: 175 KELDLERQILLHEITKLKSELKNRELHIVKMETQLRAYESDKKLARKQLID 225
+ L + L ++ ++ L++ E ++ + R E + ++ + D
Sbjct: 73 Q-LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5;
1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB:
1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 28.3 bits (64), Expect = 5.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 24 ALLLGPPGCGKTLLAKAVATEANVPFLS 51
+LLG P GK A+ + + +P +S
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQIS 30
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 28.3 bits (64), Expect = 6.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 27 LGPPGCGKTLLAKAVATEA 45
LGP G GKT LA A A +A
Sbjct: 28 LGPAGSGKTYLAMAKAVQA 46
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 28.3 bits (64), Expect = 6.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLS 51
+L+G PG GK A+ + + +P +S
Sbjct: 4 VLMGLPGAGKGTQAEQIIEKYEIPHIS 30
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 28.3 bits (64), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLS 51
+ LGPPG GK AK +A E +S
Sbjct: 4 VFLGPPGAGKGTQAKRLAKEKGFVHIS 30
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.0 bits (65), Expect = 7.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 9 RPEYYQNLGAKVPKGALLLGPPGCGKTLLAK 39
+ E +G +L GPPG GKT++
Sbjct: 1255 KHEKIFYDLLNSKRGIILCGPPGSGKTMIMN 1285
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 28.5 bits (63), Expect = 7.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 25 LLLGPPGCGKTLLAKAVATE 44
L +G PG GK+ A+ +
Sbjct: 6 LTIGCPGSGKSTWAREFIAK 25
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 27.8 bits (62), Expect = 7.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 25 LLLGPPGCGKTLLAKAVATE 44
L +G PG GK+ A+ +
Sbjct: 6 LTIGCPGSGKSTWAREFIAK 25
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 28.3 bits (62), Expect = 7.6
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 13 YQNLGAKVPKGALLLGPPGCGKTLLAKAVATE 44
Y +L + K + K L V E
Sbjct: 37 YDSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 27.9 bits (63), Expect = 7.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLS 51
LLLGPPG GK A +A + +P +S
Sbjct: 24 LLLGPPGAGKGTQAVKLAEKLGIPQIS 50
>3l0i_A DRRA, SIDM; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide
exchang GDI-displacement factor; 2.85A {Legionella
pneumophila}
Length = 363
Score = 28.2 bits (62), Expect = 8.0
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 190 KLKSELKNRELHIVKMETQLRAYESDKKLARKQLID-SVNREIAETILLKNFAHQ----L 244
+L EL+++ +K E S KK K + D + +E AE + +K + +
Sbjct: 9 ELGEELRDK----IKQEPSFSNMVSAKKFYNKAIKDFTAPKEGAEVVSVKTHIMRPIDFM 64
Query: 245 IVKCPLMMTYSSEEGRNLNIPASFKMMKKQNFLPQTSTA 283
++ SE+G +L+ P + ++++++N LP+ A
Sbjct: 65 LMGLREEFNLYSEDGAHLSAPGTIRLLREKNLLPEEQIA 103
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 28.2 bits (63), Expect = 8.5
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 16 LGAKVPKGAL--LLGPPGCGKTLLAKAVATEANVP 48
L + + G G GKT L ++ +P
Sbjct: 100 LAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLP 134
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 27.9 bits (63), Expect = 9.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 14 QNLGAKVPKGAL--LLGPPGCGKTLLAKAVA 42
L +V G + L+GP G GK+ L +A
Sbjct: 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMA 47
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 27.9 bits (63), Expect = 9.6
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 13/106 (12%)
Query: 16 LGAKVPKGALLL--GPPGCGKT--LLAKAVATEANVPFLSMNGS---EFIEMIG---GLG 65
LG G L GP GKT L + + V ++ G E + + GL
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMAETRGLN 72
Query: 66 AARVRTEVVFLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFM 111
+ + F + + K +++ F L +++ S
Sbjct: 73 PEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFAL---VVVDSIT 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.375
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,364,952
Number of extensions: 566404
Number of successful extensions: 1459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1418
Number of HSP's successfully gapped: 230
Length of query: 640
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 540
Effective length of database: 3,909,693
Effective search space: 2111234220
Effective search space used: 2111234220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)