RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10020
(640 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 93.7 bits (233), Expect = 5e-22
Identities = 42/70 (60%), Positives = 56/70 (80%)
Query: 1 MEFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
E V+YL+ P +Q LG K+PKG L++GPPG GKTLLAKA+A EA VPF +++GS+F+EM
Sbjct: 25 AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84
Query: 61 IGGLGAARVR 70
G+GA+RVR
Sbjct: 85 FVGVGASRVR 94
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 91.1 bits (226), Expect = 3e-21
Identities = 46/91 (50%), Positives = 63/91 (69%), Gaps = 8/91 (8%)
Query: 1 MEFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
E V++LK P + +GA++PKG LL+GPPG GKT LA+AVA EA VPF++ +GS+F+EM
Sbjct: 22 KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 81
Query: 61 IGGLGAARVRTEVVFLHCR------VFLHEI 85
G+GAARVR +F + VF+ EI
Sbjct: 82 FVGVGAARVRD--LFETAKRHAPCIVFIDEI 110
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 74.3 bits (182), Expect = 4e-15
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 1 MEFVDYLKR--PEYYQNLGAKVPKGALLL-GPPGCGKTLLAKAVATEAN--VPFLSMNGS 55
++ L P + G + G +++ G GKT L A+ + ++
Sbjct: 100 VDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFG 159
Query: 56 EFIEMIGGLGAARVR--TEVVFLHCRVFLHEIT 86
E + V + H + + +
Sbjct: 160 EPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK 192
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 73.3 bits (179), Expect = 5e-15
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 1 MEFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
E V Y ++ P+ + G KG L GPPGCGKTLLAKA+A E F+S+ G E +
Sbjct: 20 QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 79
Query: 60 MIGGLGAARVRTEVVFLHCR------VFLHEITIFDLETKIIENIFDLETKIILSSFMMI 113
M G A VR +F R +F E+ +++ +
Sbjct: 80 MWFGESEANVRE--IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE 137
Query: 114 VLKLNLEKEVML 125
+ ++ +K V +
Sbjct: 138 MDGMSTKKNVFI 149
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 258
Score = 69.7 bits (169), Expect = 7e-14
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MEFVDY-LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
E V+ L+ P ++ +G K P+G LL GPPG GKTL+A+AVA E F +NG E +
Sbjct: 17 KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 76
Query: 60 MIGGLGAARVR 70
+ G + +R
Sbjct: 77 KLAGESESNLR 87
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 65.8 bits (160), Expect = 6e-13
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 358 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSE-QKLYNKEEIFSPID 416
R +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E + L ++ E+ +
Sbjct: 8 RIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLT 67
Query: 417 TSRSHRVLRK 426
R +
Sbjct: 68 ALLGGRAAEE 77
Score = 65.4 bits (159), Expect = 7e-13
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 444 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEVAFHESG 503
R +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K +
Sbjct: 8 RIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLT 67
Query: 504 HALVGWL 510
L G
Sbjct: 68 ALLGGRA 74
Score = 63.5 bits (154), Expect = 4e-12
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 494 KEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEETLDPK 552
K +A+HE+GHA+V ++P+ + + +++I+PR ALG+ + P E K L K
Sbjct: 7 KRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDK 65
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 202
Score = 65.2 bits (158), Expect = 1e-12
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 358 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEEIFSPIDT 417
++A HE+GHAL+G + D + K++I+PR Q ++ +Y+K+++++ I
Sbjct: 8 EKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILV 67
Query: 418 SRSHRVLRKWVL 429
R +
Sbjct: 68 LLGGRAAEEVFF 79
Score = 60.2 bits (145), Expect = 6e-11
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 494 KEEVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEETLDP 551
KE++A HE+GHAL+G + D + K++I+PR Q ++ +Y+K++ +
Sbjct: 7 KEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNK 64
Score = 57.9 bits (139), Expect = 3e-10
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 444 RQVAFHESGHALVGWLLPHTDALLKVTIVPRTSLALGFAQYTPSEQKLYNKEE 496
++A HE+GHAL+G + D + K++I+PR Q ++ +Y+K++
Sbjct: 8 EKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKD 60
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 59.2 bits (142), Expect = 3e-10
Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 12/229 (5%)
Query: 16 LGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVF 75
+ P LL G PG GKT L A+ E + ++ F + E
Sbjct: 27 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDV 86
Query: 76 L------HCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKL 129
+ R+ I+ + + T + ++ E ++ +
Sbjct: 87 VKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP 146
Query: 130 EEEYSIELGRKLQ--DMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHE 187
+ + + + + ++ K L + E HK L + ++ E
Sbjct: 147 KINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNRE 206
Query: 188 ITKLKSELKNRELHIVKMETQLRAYESDKKLARKQLIDSVNREIAETIL 236
KL S + E + + L E ++K++ K++ ++ R + +L
Sbjct: 207 GVKLYS---SLETPSISPKETLEK-ELNRKVSGKEIQPTLERIEQKMVL 251
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 56.2 bits (135), Expect = 4e-09
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 11 EYYQNLGAKVPK--GALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
++ + + +PK L GP GKT LA A+ L++N
Sbjct: 142 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLN 193
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 55.5 bits (133), Expect = 1e-08
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
PK L++GP G GKT +A+ +A AN PF+ + ++F E+
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 88
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 51.1 bits (121), Expect = 9e-08
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 1 MEFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
V K + LL GPP GKT LA +A E+N PF+ + + +
Sbjct: 26 ELLVQQTKNSD------RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIG 79
Query: 61 IGGLGAARVRTEVVFLHCRVFLHEITIFDLET 92
+ ++ + L + + D+E
Sbjct: 80 FSETAKCQAMKKIFDDAYKSQLSCVVVDDIER 111
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 45.7 bits (107), Expect = 6e-06
Identities = 24/177 (13%), Positives = 44/177 (24%), Gaps = 13/177 (7%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI----- 61
L+ + + LL GPPG GKT LA +A E V +G +
Sbjct: 21 LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAI 80
Query: 62 --GGLGAARVRTEVVFLHCRVFLHEITIFDLETKIIENIFDLET-----KIILSSFMMIV 114
L + E +E +++ + ++ L F +I
Sbjct: 81 LANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 140
Query: 115 LKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAEL 171
+ L + + + E+
Sbjct: 141 ATTRPGL-ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRR 196
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 46.0 bits (108), Expect = 7e-06
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
PK L++GP G GKT +A+ +A AN PF+ + ++F E+
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 88
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 44.2 bits (103), Expect = 1e-05
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGG 63
LL G PG GK+ +A+A+A VP + + + I
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKH 46
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 44.8 bits (104), Expect = 1e-05
Identities = 26/187 (13%), Positives = 59/187 (31%), Gaps = 8/187 (4%)
Query: 17 GAKVPKGALLLGPPGCGKTLLAKAVATE----ANVPFLSMNGSEFIEMIGGLGAARVRTE 72
A LLG PG GKT+ + + F+ +NG + +G
Sbjct: 39 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLN 98
Query: 73 VVF----LHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKK 128
+ F L FL + E + + + + + ++L E + + +
Sbjct: 99 IPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 158
Query: 129 LEEEYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEI 188
+ L +++ + K +I L + + L +I
Sbjct: 159 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDI 218
Query: 189 TKLKSEL 195
++ +++
Sbjct: 219 LQMIADI 225
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 42.3 bits (98), Expect = 5e-05
Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 4/157 (2%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHE 84
++ GP G GK+ K +A + + G M+ G ++ + + +
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYI-EGDIINHMVVGGYRPPWESDELLALTWKNITD 64
Query: 85 ITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIE---LGRKL 141
+T+ L + + + + V + E+ + RK
Sbjct: 65 LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124
Query: 142 QDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELD 178
+ + EL ++ + ++ + L+
Sbjct: 125 DEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLN 161
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 40.0 bits (92), Expect = 5e-04
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 7 LKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
L + +V LL GPPG GKT LA +A+E +G ++
Sbjct: 21 LSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 73
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 38.8 bits (89), Expect = 7e-04
Identities = 29/170 (17%), Positives = 48/170 (28%), Gaps = 20/170 (11%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRV 80
P +LG PG GK + + LS E G + ++ V
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65
Query: 81 FLHEIT---------------IFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVML 125
+ D + EN E + VL + +EVM
Sbjct: 66 PSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMT 125
Query: 126 RKKLEEEYSIELGRKLQDMEIKHAEELKKQEQCL-----RKEKVLKIDAE 170
++ L+ S + K Q + + + +KV I A
Sbjct: 126 QRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPAN 175
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 38.4 bits (88), Expect = 7e-04
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 6/155 (3%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFLSMN---GSEFIEMIGGLGAARVRTEVVFLHCRVFL 82
L+G PG GK+ + + +A V L + I + A E + V
Sbjct: 6 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVR 65
Query: 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQ 142
+ D + + +V E + R + G
Sbjct: 66 AALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAG---P 122
Query: 143 DMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKEL 177
D K+ + K+ R+ +++D R+ +
Sbjct: 123 DRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAV 157
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 39.4 bits (90), Expect = 0.001
Identities = 13/103 (12%), Positives = 25/103 (24%)
Query: 2 EFVDYLKRPEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMI 61
+ V +G G GKT LAK + + +
Sbjct: 27 ALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 86
Query: 62 GGLGAARVRTEVVFLHCRVFLHEITIFDLETKIIENIFDLETK 104
A + T + + + I++ + D
Sbjct: 87 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV 129
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 37.6 bits (86), Expect = 0.002
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 21 PKG--ALLLGPPGCGKTLLAKAVATEANVPFLSM 52
PKG A+LLGPPG GK A +A V L+
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 37.6 bits (86), Expect = 0.002
Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 2/144 (1%)
Query: 19 KVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHC 78
K K ++G PG GK + + + LS E+ G ++ +E++
Sbjct: 6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQ 65
Query: 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEV-MLRKKLEEEYSIEL 137
V E + L ++ + + +I + E+++ L + E
Sbjct: 66 LVP-LETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPET 124
Query: 138 GRKLQDMEIKHAEELKKQEQCLRK 161
K + + + E+ ++K
Sbjct: 125 MTKRLLKRGETSGRVDDNEETIKK 148
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 37.8 bits (86), Expect = 0.003
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 17 GAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
G+ V + A+L GPPG GKT A VA E L N S+
Sbjct: 48 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 91
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 36.8 bits (84), Expect = 0.003
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 19/163 (11%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSM---------NGSEFIEMI------GGLGAARV 69
+LLG P GK A+ + + +P +S +GSE + G L +
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 70 RTEVVFLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKL 129
+V L I + + VL+ ++ E+++ + +
Sbjct: 64 VIALVKERIAQEDCRNGF--LLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIV 121
Query: 130 EEEYSIELGRKLQ--DMEIKHAEELKKQEQCLRKEKVLKIDAE 170
+++ + ++L +E K K+D
Sbjct: 122 KDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGT 164
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 36.8 bits (84), Expect = 0.004
Identities = 17/160 (10%), Positives = 49/160 (30%), Gaps = 11/160 (6%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRV 80
P ++ G P GK + + T+ + +S G I R + ++
Sbjct: 3 PLKVMISGAPASGKGTQCELIKTKYQLAHISA-GDLLRAEIAAGSENGKRAKEFMEKGQL 61
Query: 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRK 140
EI + ++ ++ + ++ + LE + +
Sbjct: 62 VPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLV 121
Query: 141 LQDMEIKHAEELKKQEQCLRKE----------KVLKIDAE 170
+ + E++K + + + ++K+ +
Sbjct: 122 ERVVFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGD 161
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 36.1 bits (82), Expect = 0.005
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSM 52
+L+GPPG GK A + + L+
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLAT 33
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 36.8 bits (84), Expect = 0.006
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 23 GALLLGPPGCGKTLLAKAVAT 43
G L+ G G GK+ +A+A
Sbjct: 30 GVLVFGDRGTGKSTAVRALAA 50
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 36.0 bits (82), Expect = 0.007
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSM 52
++G PG GK ++ + + LS
Sbjct: 10 AIMGAPGSGKGTVSSRITKHFELKHLSS 37
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 35.7 bits (81), Expect = 0.008
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMN 53
LL G PG GKT L K +A+++ + ++++
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYINVG 36
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 35.4 bits (80), Expect = 0.008
Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 14/179 (7%)
Query: 21 PKGA--LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHC 78
PKG L+ G PG GKT +A+ +A E ++G + +E+ + TE
Sbjct: 3 PKGINILITGTPGTGKTSMAEMIAAE-------LDGFQHLEVGKLVKENHFYTEYDTELD 55
Query: 79 RVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELG 138
+ E L + + ++ + + V+L E +
Sbjct: 56 THIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTK 115
Query: 139 RKLQDMEIKHAEELKKQEQCLRK-----EKVLKIDAELRHKKELDLERQILLHEITKLK 192
R+ + + E + Q C + E + + E +++ + + + LK
Sbjct: 116 RQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEVLK 174
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 35.3 bits (80), Expect = 0.009
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
++G GCG T + + +A F+ +
Sbjct: 7 MVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS 41
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 35.8 bits (81), Expect = 0.011
Identities = 29/209 (13%), Positives = 57/209 (27%), Gaps = 4/209 (1%)
Query: 16 LGAKVPKGALLL--GPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAAR--VRT 71
LG + ++ G G GKT + P E + + T
Sbjct: 27 LGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDT 86
Query: 72 EVVFLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEE 131
E F R+ +++N F + +L +E K +
Sbjct: 87 EGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVI 146
Query: 132 EYSIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEITKL 191
+ R K AE +K + + L + +
Sbjct: 147 DSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE 206
Query: 192 KSELKNRELHIVKMETQLRAYESDKKLAR 220
++ + H +R + DK++A+
Sbjct: 207 QAIGGHIVGHAATFRFFVRKGKGDKRVAK 235
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 35.9 bits (82), Expect = 0.011
Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Query: 93 KIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDMEIKHAEEL 152
+ + I + + + V ++ E K L E + + ++ E + E L
Sbjct: 187 SMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQ-RKNEQMMEQKERSYQEHL 245
Query: 153 KKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKME 206
K+ + + ++V + + R E++ LL E + +S + E+ ++ +
Sbjct: 246 KQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 34.7 bits (78), Expect = 0.016
Identities = 22/157 (14%), Positives = 54/157 (34%), Gaps = 8/157 (5%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEI 85
L+GP G GK+ + + +A + N+ F + E + G E I
Sbjct: 7 LVGPMGAGKSTIGRQLAQQLNMEFYDSD-QEIEKRTGADVGWVFDLEGEEGFRDREEKVI 65
Query: 86 TIFDLETKIIENIF-----DLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRK 140
+ I+ ET+ LS+ ++V ++ + R + +++ +
Sbjct: 66 NELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVET 125
Query: 141 LQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKEL 177
++ ++ + + I + + K +
Sbjct: 126 PPREVLEA--LANERNPLYEEIADVTIRTDDQSAKVV 160
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 34.9 bits (79), Expect = 0.016
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSM 52
+L+G PG GK A+ + +P +S
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHIST 31
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 35.6 bits (81), Expect = 0.017
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
LL+GP G GKTL+A+ +A ++P + + E
Sbjct: 68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEA 107
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 34.5 bits (78), Expect = 0.018
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSM 52
LLLGPPG GK A +A + +P +S
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQIST 31
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 34.5 bits (78), Expect = 0.018
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSM 52
+L+G PG GK A + + P +S
Sbjct: 4 VLMGLPGAGKGTQADRIVEKYGTPHIST 31
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 35.1 bits (79), Expect = 0.019
Identities = 32/207 (15%), Positives = 61/207 (29%), Gaps = 6/207 (2%)
Query: 16 LGAKVPKGALLL--GPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEV 73
LG + A+ G G GKT LA +A +P + + I R +
Sbjct: 29 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-I 87
Query: 74 VFLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEY 133
+ L + + + ++ + I LN ++ V L
Sbjct: 88 REIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS--- 144
Query: 134 SIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEITKLKS 193
R AE +K + L L ++ ++ + +
Sbjct: 145 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRP 204
Query: 194 ELKNRELHIVKMETQLRAYESDKKLAR 220
+ H + LR + K++AR
Sbjct: 205 IGGHILAHSATLRVYLRKGKGGKRIAR 231
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 34.2 bits (77), Expect = 0.021
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMN 53
+L+G G GK+ +A VA + + FL +
Sbjct: 10 VLMGVSGSGKSAVASEVAHQLHAAFLDGD 38
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 34.2 bits (77), Expect = 0.021
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEM 60
+L G GK+ + + + + P+L+ IE
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 34.6 bits (78), Expect = 0.021
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSM 52
P +LG PG GK + + LS
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 32
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 34.7 bits (78), Expect = 0.023
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 28 GPPGCGKTLLAKAVATEANVPFLS 51
GP G GK L KA+A L
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLD 33
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 34.3 bits (77), Expect = 0.026
Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 13/182 (7%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE--MIGGLGAARVRTEVVFLHCRVFL 82
+LG GK++L +A N G EF+ + G A +
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRY 70
Query: 83 HEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRK--------KLEEEYS 134
+ + + + T+ + E
Sbjct: 71 IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDD 130
Query: 135 IELGRKLQDMEIKHAEELKKQEQCLRKE--KVLKIDAELRHKKELDLERQILLHE-ITKL 191
Q + + LKK + ++ R+ + + ++L E I++L
Sbjct: 131 GLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKVLNEEEISEL 190
Query: 192 KS 193
++
Sbjct: 191 QN 192
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 33.7 bits (76), Expect = 0.029
Identities = 22/133 (16%), Positives = 40/133 (30%)
Query: 26 LLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHEI 85
+G G GK+ LA+A+A + ++ FL + + + + F +
Sbjct: 5 FIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMAD 64
Query: 86 TIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDME 145
E I L + + + R +E L +
Sbjct: 65 FFSSCEKACIATGGGFVNVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAK 124
Query: 146 IKHAEELKKQEQC 158
+ E L K EQ
Sbjct: 125 KLYNERLSKYEQK 137
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 33.8 bits (76), Expect = 0.037
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSM 52
+LG PG GK + + + + LS
Sbjct: 12 FVLGGPGAGKGTQCEKLVKDYSFVHLSA 39
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.0 bits (76), Expect = 0.039
Identities = 16/138 (11%), Positives = 32/138 (23%), Gaps = 5/138 (3%)
Query: 16 LGAKVPKGALLL--GPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGA---ARVR 70
L + G++ G GKT + +A +P G I G R+
Sbjct: 16 LQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL 75
Query: 71 TEVVFLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLE 130
+ ++ L + L ++ L +
Sbjct: 76 AVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 135
Query: 131 EEYSIELGRKLQDMEIKH 148
R++
Sbjct: 136 SGRGELSARQMHLARFLR 153
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 33.8 bits (76), Expect = 0.043
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 28 GPPGCGKTLLAKAVATEANVPFLS 51
GP GK+ +AK +A + +L
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLD 33
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 34.4 bits (78), Expect = 0.046
Identities = 39/247 (15%), Positives = 73/247 (29%), Gaps = 8/247 (3%)
Query: 86 TIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDME 145
T+ DL +E + I+L I+ + +EK +L +EEY K +
Sbjct: 113 TLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLT---DEEYRELRYGKQETYP 169
Query: 146 IKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEITKLKSELKNRELHIVKM 205
+ + ++ + + + L R + +K E L +
Sbjct: 170 LPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAA- 228
Query: 206 ETQLRAYESDKKLARKQLIDSVNREIAETILLKNFA----HQLIVKCPLMMTYSSEEGRN 261
+ AY+ + LA E + LK L + + TY G
Sbjct: 229 WVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMT 288
Query: 262 LNIPASFKMMKKQNFLPQTSTASNVNQSHNIPQEIYDDILNLKLNLEKEVMLRKKLEEEY 321
+ + K Q Q E ++ + L L E K +
Sbjct: 289 PLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQP 348
Query: 322 SIELGSP 328
+ + P
Sbjct: 349 HMNVVVP 355
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 33.5 bits (75), Expect = 0.054
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 3/143 (2%)
Query: 16 LGAKVPKGALLL--GPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAAR-VRTE 72
LG V G++ G GK+ L +A +P G I G R VR
Sbjct: 27 LGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV 86
Query: 73 VVFLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEE 132
+ + + + L + M + + ++ +
Sbjct: 87 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 146
Query: 133 YSIELGRKLQDMEIKHAEELKKQ 155
Q K L++
Sbjct: 147 SGRGELSARQMHLAKFMRALQRL 169
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 32.9 bits (74), Expect = 0.12
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 21 PKGA-LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIE 59
P G+ L GP G GKT + ++ + L + SE++E
Sbjct: 51 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 90
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 32.4 bits (72), Expect = 0.12
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 19 KVPKGALLLGPPGCGKTLLAKAVA 42
+ L+ PG G L A++
Sbjct: 22 RGHHALLIQALPGMGDDALIYALS 45
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.3 bits (72), Expect = 0.14
Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 6/195 (3%)
Query: 16 LGAKVPKGALLL--GPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEV 73
+P G L G G GKTL + + F E R+
Sbjct: 19 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 78
Query: 74 VFLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEY 133
L V ++ I D + + + + +
Sbjct: 79 WDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVF 138
Query: 134 SIELGRKLQDMEIKHAEELKKQEQC---LRKEKVLKIDAELRHKKELDLERQILLHEITK 190
+ E+ KQ + E++ + R+ E + +++
Sbjct: 139 QQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 198
Query: 191 LKSELKNRELHIVKM 205
+ R L I+K+
Sbjct: 199 EGERRR-RTLEILKL 212
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 32.4 bits (72), Expect = 0.15
Identities = 20/112 (17%), Positives = 36/112 (32%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHE 84
L+LG GK+ + K E N+P++ ++ +F E + ++ V
Sbjct: 33 LVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLP 92
Query: 85 ITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIE 136
+ L+ I E K + + LE K E
Sbjct: 93 SLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDE 144
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.2 bits (72), Expect = 0.15
Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 3/90 (3%)
Query: 16 LGAKVPKGALLL--GPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEV 73
G K +++L G G GKTLL A + E L +
Sbjct: 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQL-LRNAYSWG 77
Query: 74 VFLHCRVFLHEITIFDLETKIIENIFDLET 103
+ + + I + L+
Sbjct: 78 MDFEEMERQNLLKIVCAYPESAGLEDHLQI 107
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 31.4 bits (70), Expect = 0.19
Identities = 20/161 (12%), Positives = 47/161 (29%), Gaps = 10/161 (6%)
Query: 21 PKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRV 80
P+ + +G PG GK+ + A ++ + + A +R V
Sbjct: 14 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQG----KRVV 69
Query: 81 FLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRK 140
+ + I+ D + + +++ + +
Sbjct: 70 IDNTNPDVPSRARYIQCAKDAGVPCR---CFNFCATIEQARHNNRFREMTDPSHAPVSDM 126
Query: 141 LQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLER 181
+ K E E ++L+I L+ + L+R
Sbjct: 127 VMFSYRKQFEPPTLAEGF---LEILEIPFRLQEHLDPALQR 164
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 31.1 bits (69), Expect = 0.23
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 22 KGALLLGPPGCGKTLLAKAVATEA 45
+ L GPPG GKT L +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 31.6 bits (71), Expect = 0.33
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 14 QNLGAKVPKGALLLGPPGCGKTLLAKAVA---TEANVP-------FLSMNGSEFIEMIGG 63
Q L + +L+G PG GKT + + +A + +VP +S+ +
Sbjct: 36 QILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY 95
Query: 64 LGAARVRTEVVFLHCRVFLHEITIFDLE 91
G R + V E+ +F E
Sbjct: 96 RGEFEERLKAVIQEVVQSQGEVILFIDE 123
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 30.8 bits (68), Expect = 0.37
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 24 ALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLH 83
L GPPG GKT A+ E P L + + G + VR +V
Sbjct: 36 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV------KNFA 89
Query: 84 EITIFDLETKIIENIFDLETKIIL 107
+T+ +EN KII+
Sbjct: 90 RLTVSKPSKHDLENYPCPPYKIII 113
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.8 bits (68), Expect = 0.38
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Query: 16 LGAKVPKGA--LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAAR-VRTE 72
LG + A G GKT L+ + A +P I I R R
Sbjct: 30 LGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR 89
Query: 73 VVFLHCRVFLHEITIFDLETKIIENIFDLETKIILSSFMMI 113
+ V + L + + +E +++
Sbjct: 90 DIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHE 130
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 30.3 bits (67), Expect = 0.43
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 25 LLLGPPGCGKTLLAKAVA 42
++ G PG GKT L K +
Sbjct: 4 IITGEPGVGKTTLVKKIV 21
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 30.5 bits (67), Expect = 0.45
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 19 KVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMN 53
+ LL GP G GK A+ P +
Sbjct: 31 RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRL 65
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 30.4 bits (68), Expect = 0.54
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 14 QNLGAKVPKGALLLGPPGCGKTLLAKAVA----------TEANVPFLSMNGSEFIEMIGG 63
Q L + LL+G G GKT +A+ +A A+ S++ +
Sbjct: 32 QVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 91
Query: 64 LGAARVRTEVVFLHCRVFLHEITIFDLETKII 95
G R + + + I D II
Sbjct: 92 RGDFEKRFKALLKQLEQDTNSILFIDEIHTII 123
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.3 bits (64), Expect = 0.70
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGG 63
L +G PG GK+ A+ + + ++
Sbjct: 6 LTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAH 44
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 29.6 bits (65), Expect = 0.78
Identities = 31/213 (14%), Positives = 61/213 (28%), Gaps = 12/213 (5%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHE 84
++ GP GKT L + T++ P + G G V
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDY 66
Query: 85 ITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDM 144
+ K + + D + + + ++ + E I + ++
Sbjct: 67 LKTRAKFVKGLIFMVDS---TVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123
Query: 145 EIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLERQILLHEITK--LKSELKNRELHI 202
K E ++ E R K ++ER+I + + L
Sbjct: 124 FTARPPSKIKDAL----ESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKF 179
Query: 203 VKMETQLRAYESDKKLARKQLIDSVNREIAETI 235
+E + A+E K+ I I E +
Sbjct: 180 ANLEASVVAFEGS---INKRKISQWREWIDEKL 209
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 29.1 bits (65), Expect = 0.99
Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 22 KGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVF 81
G L+ G G GK+ A + + ++ + E E+ E++ ++
Sbjct: 16 VGVLITGDSGIGKSETALELI-KRGHRLVADDNVEIREISKD--------ELIGRAPKLI 66
Query: 82 LHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNL--EKEVMLRKKLEEEYSIELGR 139
H + I L + +F I+ + + + L ++++ R L EE L
Sbjct: 67 EHLLEIRGLGIINVMTLF-GAGSILTEKRLRLNIHLENWHKEKLYDRVGLNEETLRILDT 125
Query: 140 KLQDMEI 146
++ I
Sbjct: 126 EITKKTI 132
>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 177
Score = 28.9 bits (65), Expect = 1.1
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 468 KVTIVPRTSLALGFAQYTPSE-QKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVP 524
+ I P L AQY ++ K+ +++ H + G + + LL VP
Sbjct: 20 SIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVP 77
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 29.1 bits (65), Expect = 1.2
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 6 YLKRPEYYQNLGAKVPKGAL--LLGPPGCGKTLLAKAVA 42
Y + +++ + ++ GP G GK+ + +
Sbjct: 11 YDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 29.1 bits (65), Expect = 1.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 25 LLLGPPGCGKTLLAKAV 41
L+ G G GK ++A+ +
Sbjct: 27 LITGESGVGKEVVARLI 43
>d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII)
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 180
Score = 28.6 bits (64), Expect = 1.6
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 468 KVTIVPRTSLALGFAQYTPSE-QKLYNKEEVAFHESGHALVGWLLPHTDALLKVTIVP 524
KV IVP +A+ AQ+ E + KE V + H + G + H + LL VP
Sbjct: 25 KVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVP 82
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 28.8 bits (64), Expect = 1.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 26 LLGPPGCGKTLLAKAVA 42
LLGP G GK++ + +A
Sbjct: 29 LLGPTGAGKSVFLELIA 45
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.9 bits (64), Expect = 1.7
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 19 KVPKGAL--LLGPPGCGKTLLAKAVA 42
KV G +LGP G GKTL + +A
Sbjct: 22 KVESGEYFVILGPTGAGKTLFLELIA 47
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.4 bits (62), Expect = 1.8
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 10/115 (8%)
Query: 28 GPPGCGKTLLAKAVATEAN-----VPFLSMNGSEFIEMIGGLGAARVRTE-----VVFLH 77
G GKT L K + + + G + +R +V
Sbjct: 9 AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQ 68
Query: 78 CRVFLHEITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEE 132
R L T + E + ++T + + + K V+ R
Sbjct: 69 QRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHR 123
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 28.3 bits (63), Expect = 1.9
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 14 QNLGAKVPKGAL--LLGPPGCGKTLLAKAVA 42
+ + + KG + GP G GKT L K ++
Sbjct: 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 48
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 28.7 bits (64), Expect = 2.0
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 14 QNLGAKVPKGAL--LLGPPGCGKTLLAKAVA 42
+N+ + KG + + G G GKT L +
Sbjct: 53 KNINLNIEKGEMLAITGSTGSGKTSLLMLIL 83
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 28.5 bits (63), Expect = 2.1
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 19 KVPKGAL--LLGPPGCGKTLLAKAVA 42
+ G +LGP G GKT + +A
Sbjct: 27 NIENGERFGILGPSGAGKTTFMRIIA 52
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 28.4 bits (63), Expect = 2.1
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 19 KVPKGAL--LLGPPGCGKTLLAKAVA 42
+V G LLGP GCGKT + +A
Sbjct: 25 EVKDGEFMILLGPSGCGKTTTLRMIA 50
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 28.2 bits (63), Expect = 2.4
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 20 VPKGAL--LLGPPGCGKTLLAKAVA 42
+ G LLGP GCGKT + +A
Sbjct: 29 IKDGEFLVLLGPSGCGKTTTLRMIA 53
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.4 bits (63), Expect = 2.4
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 19 KVPKGAL--LLGPPGCGKTLLAKAVA 42
+ +G +GP GCGK+ L + +A
Sbjct: 22 DIHEGEFVVFVGPSGCGKSTLLRMIA 47
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 28.1 bits (61), Expect = 2.5
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPF 49
L G GK +A+A+ N
Sbjct: 10 FLTGYMNSGKDAIARALQVTLNQQG 34
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 28.3 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 6 YLKRPEYY--QNLGAKVPKGAL--LLGPPGCGKTLLAKAVA 42
Y RP+ Q L + G + L+GP G GK+ +A +
Sbjct: 21 YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ 61
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 27.7 bits (60), Expect = 3.1
Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 10/156 (6%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHE 84
L G G GKT ++ A+ L +G + G + + F +
Sbjct: 23 WLTGLSGAGKTTVSMALEEY-----LVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV 77
Query: 85 ITIFDLETKIIENIFDLETKIILSSFMMIVLKLNLEKEVMLRKKLEEEYSIELGRKLQDM 144
I ++ + T SF+ + + + + + L
Sbjct: 78 RRIAEVAKLFADAGLVCIT-----SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVC 132
Query: 145 EIKHAEELKKQEQCLRKEKVLKIDAELRHKKELDLE 180
E + + L K+ + + ID+E + +L
Sbjct: 133 EQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELV 168
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 27.6 bits (61), Expect = 4.1
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 19 KVPKGAL--LLGPPGCGKTLLAKAVA 42
++ +G + L+GP G GKT + ++
Sbjct: 24 EIEEGEIFGLIGPNGAGKTTTLRIIS 49
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 27.6 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 15 NLGAKVPKGAL--LLGPPGCGKTLLAKAVA 42
L +V G + L+GP G GK+ L +A
Sbjct: 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMA 46
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 27.6 bits (61), Expect = 4.3
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 19 KVPKGAL--LLGPPGCGKTLLAKAVA 42
V KG + ++GP G GK+ L +
Sbjct: 26 SVNKGDVTLIIGPNGSGKSTLINVIT 51
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.4 bits (59), Expect = 4.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 28 GPPGCGKTLLAKAVATEANVPFLSM 52
G GKT LA ++ +S+
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISV 53
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 27.5 bits (61), Expect = 4.6
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 14 QNLGAKVPKGAL--LLGPPGCGKTLLAKAVA 42
+N+ K+P G L+G G GK+ +A +
Sbjct: 32 RNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 27.1 bits (60), Expect = 5.5
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 14 QNLGAKVPKGAL--LLGPPGCGKTLLAKAVA 42
+++ + KG +G G GK+ L +
Sbjct: 35 KDINLSIEKGETVAFVGMSGGGKSTLINLIP 65
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 26.7 bits (59), Expect = 5.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 134 SIELGRKLQDMEIKHAEELKKQEQCLRKEKVLKIDAELRHKKEL 177
SI++ L E+L+ + + K L ID+ L +KEL
Sbjct: 46 SIDVAPILDKAVKAKGEKLEWRTSIVDLMKALDIDSSLSARKEL 89
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 27.2 bits (60), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 19 KVPKGAL--LLGPPGCGKTLLAKAVA 42
KVP+G + L+G G GKT A+A
Sbjct: 28 KVPRGQIVTLIGANGAGKTTTLSAIA 53
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.5 bits (60), Expect = 5.7
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 4 VDYLKR--PEYYQNLGAKVPKGALLLGPPGCGKTLLAKAVATE 44
+++L + PE+++ G K P GP G GK+ + +
Sbjct: 9 IEFLDKYIPEWFET-GNKCPLFIFFSGPQGSGKSFTSIQIYNH 50
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.9 bits (58), Expect = 6.1
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 25 LLLGPPGCGKTLLAKAVA 42
+++G P GKT ++K +
Sbjct: 6 VMVGLPARGKTYISKKLT 23
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 27.1 bits (60), Expect = 6.3
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 19 KVPKGAL--LLGPPGCGKTLLAKAVA 42
+ G + ++G G GK+ + +
Sbjct: 24 QARAGDVISIIGSSGSGKSTFLRCIN 49
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.9 bits (58), Expect = 6.5
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 25 LLLGPPGCGKTLLAKAVA 42
++ G PG G T ++
Sbjct: 5 VVTGVPGVGSTTSSQLAM 22
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.9 bits (59), Expect = 6.8
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 15 NLGAKVPKGALLLGPPGCGKT----LLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVR 70
N+ K P L++G G GKT LA+ + L+ + + L R
Sbjct: 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQR 62
Query: 71 TEVVFLHCRVFLHEITI-FDLETKIIENIFDL 101
+ + ++ FD D+
Sbjct: 63 NNIPVIAQHTGADSASVIFDAIQAAKARNIDV 94
>d2ogqa2 d.223.1.2 (A:507-593) Serine/threonine-protein kinase plk
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 25.5 bits (56), Expect = 7.3
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 86 TIFDLETKIIE-NIFDLETKIILSSFMMIVLKLNLEKE---VMLRKKLEEEYSIELGRKL 141
I L ++ N F TK+IL M V ++ +++ L E EL +L
Sbjct: 15 IILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRL 74
Query: 142 Q 142
+
Sbjct: 75 R 75
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.5 bits (57), Expect = 7.3
Identities = 11/91 (12%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRTEVVFLHCRVFLHE 84
++ G PG GK+ + V L G + G ++ + R + +
Sbjct: 5 IVTGIPGVGKSTVLAKVKE-----ILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRK 59
Query: 85 ITIFDLETKIIENIFDLETKIILSSFMMIVL 115
+++ + I+ + + + +
Sbjct: 60 LSVEKQKKLQIDAAKGIAEEARAGGEGYLFI 90
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 26.6 bits (58), Expect = 7.5
Identities = 2/25 (8%), Positives = 6/25 (24%)
Query: 25 LLLGPPGCGKTLLAKAVATEANVPF 49
L+ G ++ +
Sbjct: 19 LINGEDLSYPREVSLELPEYVEKFP 43
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 26.0 bits (56), Expect = 7.9
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 24 ALLLGPPGCGKTLLA 38
A L P G GK+
Sbjct: 11 AHLHAPTGSGKSTKV 25
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.5 bits (57), Expect = 8.0
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 26 LLGPPGCGKTLLAKAVATE 44
L GP GK+ + + +
Sbjct: 7 LSGPSAVGKSTVVRCLRER 25
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 26.9 bits (58), Expect = 8.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 25 LLLGPPGCGKTLLAKAVA 42
L+ P G GK++LA +A
Sbjct: 33 ALVSPGGAGKSMLALQLA 50
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.8 bits (59), Expect = 8.5
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 14 QNLGAKVPKGAL--LLGPPGCGKTLLAKAVA 42
N+ + +G + ++G G GK+ L K +
Sbjct: 20 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ 50
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.1 bits (59), Expect = 9.0
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 169 AELRHKKELDLERQILLHEITKLKSELKN 197
+++R+ K + E + + E+ ++S+ K
Sbjct: 10 SDIRNCKSKEAEIKRINKELANIRSKFKG 38
>d2gfqa1 c.56.7.1 (A:1-274) Hypothetical protein PH0006 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 274
Score = 26.8 bits (59), Expect = 9.1
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 474 RTSLALGFAQYTPSEQKLYNKEEVAFHESGHALVGWLLPHTDALLKVTI 522
+ +L +G Y P + K + ++AF GH L + P + ++ +
Sbjct: 190 KVALGIGGGHYAPKQTKRALEGDLAF---GHILPKYAQPVSRDVMIKAL 235
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.4 bits (57), Expect = 9.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 26 LLGPPGCGKTLLAKAVATE 44
L GP G GK+ L K + E
Sbjct: 5 LSGPSGAGKSTLLKKLFQE 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.375
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,249,552
Number of extensions: 105941
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 148
Length of query: 640
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 549
Effective length of database: 1,158,166
Effective search space: 635833134
Effective search space used: 635833134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.3 bits)