Query psy10021
Match_columns 716
No_of_seqs 319 out of 761
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 15:51:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2572|consensus 100.0 7E-112 1E-116 891.9 23.5 370 1-713 1-371 (498)
2 KOG2573|consensus 100.0 2.1E-96 4E-101 774.7 25.8 377 1-714 3-386 (498)
3 PRK14552 C/D box methylation g 100.0 1.9E-77 4E-82 644.4 24.6 238 387-715 116-355 (414)
4 COG1498 SIK1 Protein implicate 100.0 1.5E-75 3.2E-80 621.7 22.4 239 387-714 93-332 (395)
5 KOG2574|consensus 100.0 6.4E-50 1.4E-54 425.1 2.8 215 477-715 91-312 (492)
6 PF01798 Nop: Putative snoRNA 100.0 2.7E-41 5.8E-46 322.0 3.7 121 570-714 1-122 (150)
7 KOG2573|consensus 99.9 7.8E-27 1.7E-31 248.3 4.1 114 203-317 351-490 (498)
8 KOG2572|consensus 99.9 1.7E-24 3.7E-29 230.6 10.4 257 292-651 48-308 (498)
9 COG1498 SIK1 Protein implicate 99.8 6.1E-19 1.3E-23 189.6 12.4 203 418-651 61-268 (395)
10 PF08060 NOSIC: NOSIC (NUC001) 99.8 1.8E-19 3.9E-24 145.4 6.1 53 411-463 1-53 (53)
11 PRK14552 C/D box methylation g 99.7 2.4E-17 5.1E-22 179.4 11.3 97 428-530 89-188 (414)
12 PF08156 NOP5NT: NOP5NT (NUC12 99.7 2E-17 4.3E-22 139.5 5.3 66 1-66 1-67 (67)
13 PF08060 NOSIC: NOSIC (NUC001) 99.7 4.2E-17 9E-22 131.8 3.2 49 482-530 1-49 (53)
14 PF01798 Nop: Putative snoRNA 99.2 6.1E-12 1.3E-16 121.1 2.1 62 203-265 87-149 (150)
15 KOG2574|consensus 98.9 1.4E-09 3.1E-14 118.3 7.5 114 409-522 94-230 (492)
16 KOG4715|consensus 30.4 1.6E+02 0.0036 33.0 7.3 51 162-212 184-234 (410)
17 KOG2014|consensus 26.5 97 0.0021 34.5 4.8 73 547-620 228-304 (331)
No 1
>KOG2572|consensus
Probab=100.00 E-value=6.7e-112 Score=891.91 Aligned_cols=370 Identities=61% Similarity=0.904 Sum_probs=355.6
Q ss_pred CeEeeccCcceeeeeeccchhccchhhHHHhcCChhhhhcceeeccccCCCCHHHHHHHHHHhhccccChHHHHHHHHhc
Q psy10021 1 MLVLFETPAGYAFFKLLDEKKLQEADNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLV 80 (716)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (716)
|+|||||++|||+||++||+++++.|+||+.|.||++|.+++||++|+||.+|.+||+++++++||++++.|++||+.+.
T Consensus 1 mlvL~Eta~Gya~fk~~de~kl~~v~~l~~ef~s~e~a~~~~kl~~f~kf~~ta~alea~~~l~eGkvs~~L~k~lk~~~ 80 (498)
T KOG2572|consen 1 MLVLFETAAGYALFKVLDEKKLANVDDLWKEFSSAEKALKMVKLVAFEKFDSTAEALEAVTALAEGKVSSGLEKFLKLNK 80 (498)
T ss_pred CeEEEeeccceeeeeecchhhHhhHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhHHHHHHhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred cccccceeEeeccCCcCcccccccccccccCCCCCCchhhhhccccchhhcccCCCCCCCCccccccccCCCcceeeecC
Q psy10021 81 SSDVQENLLVADTKRAAYPSLGTTVLLYPYSWSGSSSNAAAKHFHNSFVINIKKPKKSSSSSKHHHHATSKKNASVTHAT 160 (716)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (716)
..+.|+|+|+| ||..| ++ ++++.|+|+
T Consensus 81 ---~~etLaVaD~K------Lgn~i---------------------------~e----------------kL~~~~v~~- 107 (498)
T KOG2572|consen 81 ---KKETLAVADAK------LGNAI---------------------------KE----------------KLSINCVHD- 107 (498)
T ss_pred ---cCCeeeeccHH------HhHHH---------------------------HH----------------hhcceeecc-
Confidence 68899999999 99999 43 699999999
Q ss_pred CCcccCCCcchhHHhHhHHHHhhhhhhcccccCCCChHHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHhhhhhcc
Q psy10021 161 PSVETGHTKPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDAL 240 (716)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~l~~k~~~a~r~d~~ 240 (716)
+.+++||||||.|+..||
T Consensus 108 ----------------------------------~~v~el~RgiRs~l~el~---------------------------- 125 (498)
T KOG2572|consen 108 ----------------------------------SAVMELLRGIRSQLTELI---------------------------- 125 (498)
T ss_pred ----------------------------------hhHHHHHHHHHHHHHHHh----------------------------
Confidence 999999999999999999
Q ss_pred CCCcccccchhhhHHHHHHHHHHhhcccccCCcchHHHHHHHHhhhhhhhhhhchhhccccccCCCCCCCCccccccccc
Q psy10021 241 GEDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKYHGKRLEKKKFKTEFDAAEETPATPDTSSSGKKKKKN 320 (716)
Q Consensus 241 ~~~~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~k~~~~a~~~~e~~~~p~~~~~~k~k~~~ 320 (716)
+|+.
T Consensus 126 -------------------------------~g~~--------------------------------------------- 129 (498)
T KOG2572|consen 126 -------------------------------SGLN--------------------------------------------- 129 (498)
T ss_pred -------------------------------ccCC---------------------------------------------
Confidence 8873
Q ss_pred ccccccccccCCCCCchhhhhhhhHhhhhccccCCCCccccCchhhHHhHHHhhhhcccccCCCCccchhhhhhhhcccc
Q psy10021 321 KNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYK 400 (716)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~g~~~~~~~k~~~~~~~~~v~~~~~~~~~lgLaHslSR~K 400 (716)
..|++ .|.|||+|+++|||
T Consensus 130 ------------~~dl~-------------------------------------------------~msLglaHslar~K 148 (498)
T KOG2572|consen 130 ------------DSDLA-------------------------------------------------AMSLGLAHSLARYK 148 (498)
T ss_pred ------------hhhhh-------------------------------------------------HHHHHHHHHHHhhh
Confidence 44566 99999999999999
Q ss_pred cccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhcccchhhccccCCCchh
Q psy10021 401 LKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVD 480 (716)
Q Consensus 401 lkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D 480 (716)
|+|+|+++|+||||||+||||||||+|+|.||||||||||||||.+|+.||..|+++|..||+
T Consensus 149 lkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFPEL~kii~dn~~Yak~vk~mG~----------------- 211 (498)
T KOG2572|consen 149 LKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFPELAKIIQDNYAYAKLVKAMGV----------------- 211 (498)
T ss_pred cccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHhH-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhccCChhHHHHHHHHHhhhcC
Q psy10021 481 TMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMG 560 (716)
Q Consensus 481 ~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseILp~e~i~~I~~AAstSmG 560 (716)
|.+....||++|||+++...+..+|++|||
T Consensus 212 --------------------------------------------------r~~~a~~d~sEil~eeiE~~~k~aAeiSMg 241 (498)
T KOG2572|consen 212 --------------------------------------------------RCNAASLDFSEILPEEIEAELKEAAEISMG 241 (498)
T ss_pred --------------------------------------------------hhhhhcccHHhhchHHHHHHHHhhhhhhhc
Confidence 556677889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhhhhhhhH
Q psy10021 561 TEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEK 640 (716)
Q Consensus 561 teLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIasLGA~K 640 (716)
++|++.|+.+|..+|++|+++.+||.+|.+||.+||..||||||+|||++||||||+|||||.||||+|+||
T Consensus 242 teis~~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLaK~p~St-------- 313 (498)
T KOG2572|consen 242 TEISDSDLLNIKELCDQVLELAEYRDQLIDYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLAKAPAST-------- 313 (498)
T ss_pred ccccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHhhCChhH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhcccc-ccccccc
Q psy10021 641 ALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQP-GSASRAR 713 (716)
Q Consensus 641 kl~~~L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~aK-~s~~r~~ 713 (716)
||||||||||||||||+++|||||+|||++||+|+||++||||+|+||+| +.+.|.|
T Consensus 314 ----------------IQilGAEKALFrALKtk~~TPKYGLIyhasLVgQa~pKnKGKIaR~LAaK~alA~R~D 371 (498)
T KOG2572|consen 314 ----------------IQILGAEKALFRALKTKHDTPKYGLIYHASLVGQASPKNKGKIARSLAAKTALAARID 371 (498)
T ss_pred ----------------HHHHhhHHHHHHHHhcccCCCCCcceeccchhccCCcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 4555654
No 2
>KOG2573|consensus
Probab=100.00 E-value=2.1e-96 Score=774.73 Aligned_cols=377 Identities=42% Similarity=0.659 Sum_probs=341.3
Q ss_pred CeEeeccCcceeeeeeccchhc-cchhhHHHhcCChhhhhcceeeccccCCCCHHHHHHHHHHhhccccChHHHHHHHHh
Q psy10021 1 MLVLFETPAGYAFFKLLDEKKL-QEADNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSL 79 (716)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (716)
+++|||.|+||++|++..-..+ +..+.+..+.++...+.++|.|.+|.+|.++.+||++++++.||.+++.|++||..+
T Consensus 3 ~~ll~E~a~GY~lf~~~~~dei~~~~~~v~~s~~D~~kf~~vv~l~sf~pFk~a~~ALen~n~iSeG~~~edLr~fLe~n 82 (498)
T KOG2573|consen 3 EYLLFESATGYGLFKVKEQDEIGLHLKEVRSSVDDLSKFTQVVQLASFAPFKGAADALENANAISEGVVHEDLRSFLELN 82 (498)
T ss_pred ceEEEeccCceeEEEEechhHhhhhhHHHHHHHHhHHHHHhHhhhhccCCcccHHHHHHhccccccccccHHHHHHHHhh
Confidence 4799999999999999753333 367788899999999999999999999999999999999999999999999999998
Q ss_pred ccc--cccceeEeeccCCcCcccccccccccccCCCCCCchhhhhccccchhhcccCCCCCCCCccccccccCCC-ccee
Q psy10021 80 VSS--DVQENLLVADTKRAAYPSLGTTVLLYPYSWSGSSSNAAAKHFHNSFVINIKKPKKSSSSSKHHHHATSKK-NASV 156 (716)
Q Consensus 80 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (716)
++. .....|.|+|+| ||..| + + .. .+.|
T Consensus 83 lpK~kkkk~sLgi~d~k------Lg~~i---------------------------~-E---------------~~~~i~c 113 (498)
T KOG2573|consen 83 LPKVKKKKVSLGIGDSK------LGISI---------------------------K-E---------------AFPKIPC 113 (498)
T ss_pred ChhhhcCceeeccCcch------hhhHH---------------------------H-h---------------hccCccc
Confidence 875 334579999999 99998 4 2 34 4888
Q ss_pred eecCCCcccCCCcchhHHhHhHHHHhhhhhhcccccCCCChHHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHhhh
Q psy10021 157 THATPSVETGHTKPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAALATR 236 (716)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~l~~k~~~a~r 236 (716)
.++ ..+++||||+|.|+..|+
T Consensus 114 ~~~-----------------------------------~~~~ellRGvR~hf~kl~------------------------ 134 (498)
T KOG2573|consen 114 QSN-----------------------------------EVVQELLRGVRKHFDKLM------------------------ 134 (498)
T ss_pred ccc-----------------------------------hhHHHHHHHHHHHHHHHH------------------------
Confidence 888 899999999999999999
Q ss_pred hhccCCCcccccchhhhHHHHHHHHHHhhcccccCCcchHHHHHHHHhhhhhhhhhhchhhccccccCCCCCCCCccccc
Q psy10021 237 VDALGEDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKYHGKRLEKKKFKTEFDAAEETPATPDTSSSGKK 316 (716)
Q Consensus 237 ~d~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~k~~~~a~~~~e~~~~p~~~~~~k~ 316 (716)
.|++
T Consensus 135 -----------------------------------K~L~----------------------------------------- 138 (498)
T KOG2573|consen 135 -----------------------------------KGLD----------------------------------------- 138 (498)
T ss_pred -----------------------------------ccCC-----------------------------------------
Confidence 6663
Q ss_pred ccccccccccccccCCCCCchhhhhhhhHhhhhccccCCCCccccCchhhHHhHHHhhhhcccccCCCCccchhhhhhhh
Q psy10021 317 KKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSL 396 (716)
Q Consensus 317 k~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~g~~~~~~~k~~~~~~~~~v~~~~~~~~~lgLaHsl 396 (716)
+.+.. ++||||+|+|
T Consensus 139 ----------------~~d~~-------------------------------------------------kaqLGLghsY 153 (498)
T KOG2573|consen 139 ----------------PGDLE-------------------------------------------------KAQLGLGHSY 153 (498)
T ss_pred ----------------CccHH-------------------------------------------------HHHhcccchh
Confidence 33333 8999999999
Q ss_pred cccccccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhcccchhhccccCC
Q psy10021 397 SRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSP 476 (716)
Q Consensus 397 SR~Klkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~ 476 (716)
||.|||||++|+|+||||||.|||+||||||+|+||||||||||||||.+|++||..|++++..|+++..++...+
T Consensus 154 SRaKVkfnV~R~DnmvIqaI~lLDqlDKDINtfaMRirEwYswhFPEL~kiv~DNy~ya~~~~~i~dk~~l~ed~~---- 229 (498)
T KOG2573|consen 154 SRAKVKFNVNRVDNMVIQAIALLDQLDKDINTFAMRIREWYSWHFPELVKIVPDNYKYAKVVKFIVDKEKLNEDGL---- 229 (498)
T ss_pred hhhheeecccccchHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccHHHHHhccchHHHHHHHHHHhchhhccccch----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999655544220
Q ss_pred CchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhccC--ChhHHHHHHHH
Q psy10021 477 DKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEIL--PEDVEEKVKEA 554 (716)
Q Consensus 477 ~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseIL--p~e~i~~I~~A 554 (716)
.++-+.| +.+.+..|++|
T Consensus 230 ------------------------------------------------------------~~~~e~l~~d~~ka~~Iiea 249 (498)
T KOG2573|consen 230 ------------------------------------------------------------HELLEDLGVDSEKAQEIIEA 249 (498)
T ss_pred ------------------------------------------------------------hHHHHHhcCcHHHHHHHHHH
Confidence 0111222 35688899999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhh
Q psy10021 555 AEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQ 634 (716)
Q Consensus 555 AstSmGteLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIa 634 (716)
+.+|||++||+.|+.||..++++|..|.+||++|.+||.++|+.|||||++|+|+.||||||+|||||+||||.||||
T Consensus 250 ~k~SMG~diS~~Dl~Ni~~fa~rV~~l~eyRk~L~~YL~~KMs~vAPnLa~LIGe~vgARLIShAGsLtNLaK~PAST-- 327 (498)
T KOG2573|consen 250 AKNSMGQDISPADLENIRKFAERVSDLAEYRKQLSDYLKDKMSSVAPNLAALIGEVVGARLISHAGSLTNLAKYPAST-- 327 (498)
T ss_pred HhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhccccchhhhCcchH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhhhhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhccccccc-cccc
Q psy10021 635 ILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQPGSA-SRAR 713 (716)
Q Consensus 635 sLGA~Kkl~~~L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~aK~s~-~r~~ 713 (716)
||||||||||||+|||+++|||||+||||+||+++..++||+|+||||.|||+ ||.|
T Consensus 328 ----------------------vQIlGAEKALFRALKtrgnTPKYGLIyhSsfigrA~akNKGRISRyLAnKCSIAsrID 385 (498)
T KOG2573|consen 328 ----------------------VQILGAEKALFRALKTRGNTPKYGLIYHSSFIGRAGAKNKGRISRYLANKCSIASRID 385 (498)
T ss_pred ----------------------HHHhhhHHHHHHHHHhcCCCCCceeEeecchhhhhhccccchHHHHHHhhccHHHhhh
Confidence 99999999999999999999999999999999999999999999999999885 6888
Q ss_pred c
Q psy10021 714 V 714 (716)
Q Consensus 714 ~ 714 (716)
|
T Consensus 386 c 386 (498)
T KOG2573|consen 386 C 386 (498)
T ss_pred h
Confidence 7
No 3
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=100.00 E-value=1.9e-77 Score=644.36 Aligned_cols=238 Identities=39% Similarity=0.604 Sum_probs=225.8
Q ss_pred cchhhhhhhhcccccccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhccc
Q psy10021 387 LNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHS 466 (716)
Q Consensus 387 ~~~lgLaHslSR~Klkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHS 466 (716)
.+.+|++|++||+||+|++++.|+||||||+++|+||++||.|+||+||||+||||||.++++|+..|+++|..+|.+..
T Consensus 116 ~~~~~~~~~~sr~klk~~~~~~D~~iiqai~~ld~ldk~in~~~~RLrewY~~~FPEL~~iv~d~~~Y~~iV~~i~~~~~ 195 (414)
T PRK14552 116 EKLHEWSVELTRRKLRSAAQKRDKLAIQAIRAIDDIDKTINLFSERLREWYSLHFPELDELVKKHEEYVKLVSELGDREN 195 (414)
T ss_pred HHHHHHhHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCHHhhcCChHHHHHHHHHcCChhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999988422
Q ss_pred chhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhcc-CCh
Q psy10021 467 LSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEI-LPE 545 (716)
Q Consensus 467 LSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseI-Lp~ 545 (716)
+...+|.++ +++
T Consensus 196 -------------------------------------------------------------------i~~~~l~~i~l~~ 208 (414)
T PRK14552 196 -------------------------------------------------------------------YTREKLKKLGLPE 208 (414)
T ss_pred -------------------------------------------------------------------hhhhHHHhccCCH
Confidence 222344555 788
Q ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhh
Q psy10021 546 DVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNL 625 (716)
Q Consensus 546 e~i~~I~~AAstSmGteLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nL 625 (716)
++++.|.++|++|||.++++.|+.+|..+|++|++|+++|++|.+||+++|..+|||||+|||+.+|||||++||||.+|
T Consensus 209 eka~~I~~aA~~S~G~~lse~dl~~I~~~a~~I~~L~e~R~~L~~yI~~~M~~iAPNLtaLVG~~lAArLIa~AGsL~~L 288 (414)
T PRK14552 209 NKARKIAEAAKKSMGADLSEFDLEAIKKLANEILDLYKLREELEDYLETVMKEVAPNLTALVGPSLGARLISLAGGLEEL 288 (414)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhhHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhhhhhhhHHHhhhhhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhccc
Q psy10021 626 AKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQ 705 (716)
Q Consensus 626 AKmPASnIasLGA~Kkl~~~L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~a 705 (716)
|+||||| |||||||||||+||+|+++||||||||||++||++|+++||||+||||+
T Consensus 289 ak~Past------------------------IqiLGAeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgkiaR~lA~ 344 (414)
T PRK14552 289 AKMPAST------------------------IQVLGAEKALFRHLRTGAKPPKHGVIFQYPAIHGSPWWQRGKIARALAA 344 (414)
T ss_pred hhCCchH------------------------HHHhchhhHHHHHhccCCCCCCceEEEcCHHHhhCCHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999
Q ss_pred c-ccccccccC
Q psy10021 706 P-GSASRARVT 715 (716)
Q Consensus 706 K-~s~~r~~~~ 715 (716)
| +.+||+|+-
T Consensus 345 K~alAARiD~~ 355 (414)
T PRK14552 345 KLAIAARVDYF 355 (414)
T ss_pred HHHHHHHhhhc
Confidence 9 667898874
No 4
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-75 Score=621.69 Aligned_cols=239 Identities=47% Similarity=0.754 Sum_probs=224.8
Q ss_pred cchhhhhhhhcccccccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhccc
Q psy10021 387 LNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHS 466 (716)
Q Consensus 387 ~~~lgLaHslSR~Klkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHS 466 (716)
.+.++++|.+||.|+++++++.|+||||||++|||||++||.|+||+|||||||||||+++|.||.+|+++|..+|++..
T Consensus 93 ~~~~~~~~~~sr~kv~~~~~~~D~~iiqai~~lddiDk~iN~~~~RlrEWY~~hFPEL~~lv~~~~~Y~~~V~~~g~~~~ 172 (395)
T COG1498 93 RMLLGLGHELSRIKVREEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGNREN 172 (395)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhcccHHHHHHHHHHHcchhc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999544
Q ss_pred chhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhccCChh
Q psy10021 467 LSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPED 546 (716)
Q Consensus 467 LSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseILp~e 546 (716)
++... ..+|..++|.
T Consensus 173 ~~~~~----------------------------------------------------------------~~~l~~~~~~- 187 (395)
T COG1498 173 INKES----------------------------------------------------------------LKDLGFALPD- 187 (395)
T ss_pred cchhh----------------------------------------------------------------HHHHhhhcch-
Confidence 33321 2245556666
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhh
Q psy10021 547 VEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLA 626 (716)
Q Consensus 547 ~i~~I~~AAstSmGteLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLA 626 (716)
.++.|..+|.+|||.++++.|+.+|..+|+.+.+|+++|++|.+||+++|..||||||+||||.||||||+|||||.+||
T Consensus 188 ~~~~i~~aA~~SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~l~~Yi~~~M~~vAPNlt~LVG~~lgARLIs~AGgL~~LA 267 (395)
T COG1498 188 IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLEEYIESKMSEIAPNLTALVGPVLGARLISHAGGLTRLA 267 (395)
T ss_pred HHHHHHHHhhcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHhHHHHHHHHHHhcCHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhhhhhhHHHhhhhhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhcccc
Q psy10021 627 KHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQP 706 (716)
Q Consensus 627 KmPASnIasLGA~Kkl~~~L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~aK 706 (716)
+||||| ||||||||||||||+++++|||||+||||++|+++|+|+|||||||||+|
T Consensus 268 k~PAST------------------------IQvLGAEKALFraL~~~~~~PK~GvIy~~p~I~~sp~~~rGkiAR~LAaK 323 (395)
T COG1498 268 KMPAST------------------------IQVLGAEKALFRALKTGAKTPKYGVIYQSPLIQKSPPWQRGKIARALAAK 323 (395)
T ss_pred hCccch------------------------hhhhhhhHHHHHHHhCCCCCCCceeEeeChhhccCCHHHhhHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999
Q ss_pred -cccccccc
Q psy10021 707 -GSASRARV 714 (716)
Q Consensus 707 -~s~~r~~~ 714 (716)
+-+||+|+
T Consensus 324 ~AIAARiD~ 332 (395)
T COG1498 324 LAIAARIDA 332 (395)
T ss_pred HHHHHHHHh
Confidence 55678774
No 5
>KOG2574|consensus
Probab=100.00 E-value=6.4e-50 Score=425.07 Aligned_cols=215 Identities=26% Similarity=0.424 Sum_probs=195.4
Q ss_pred CchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCc----CCCCCcch--hhccCChhHHHH
Q psy10021 477 DKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNST----RDKTSASD--LSEILPEDVEEK 550 (716)
Q Consensus 477 ~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~----r~nl~~~d--LseILp~e~i~~ 550 (716)
+....+||.+|++..+||+||+.+|+||||||+.+||||+++|++|++|+.++. ..|....+ +..||+..++|+
T Consensus 91 dpeykLIVd~n~iavdI~nEI~ivH~FikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~~~~~L~~atIMV 170 (492)
T KOG2574|consen 91 DPEYKLIVDCNQIAVDIENEIVIVHNFIKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLELQAILPSATIMV 170 (492)
T ss_pred CcceeeeechhhhhhhhhhhHHHHHHHHHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhhhhccCccceEEE
Confidence 455668999999999999999999999999999999999999999999987543 22333333 445999999999
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCC
Q psy10021 551 VKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPA 630 (716)
Q Consensus 551 I~~AAstSmGteLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPA 630 (716)
|.++|.||.|..+++++++.|.++|+++.+|...|..|.+||++||..||||||++||+.+||+||++||||.+|++|||
T Consensus 171 vsvTasTT~G~~Lp~d~~~~v~eAc~~a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~AGGls~Lsk~Pa 250 (492)
T KOG2574|consen 171 VSVTASTTQGNKLPEDELEQVLEACEMAEQLNKLKEKIYEYVESRMSFIAPNLSAIVGSTTAAKLIGIAGGLSELSKMPA 250 (492)
T ss_pred EEEEeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHhhhcHHHHHHHHHhhcCchhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhHHHhhhhhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhcccc-ccc
Q psy10021 631 STVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQP-GSA 709 (716)
Q Consensus 631 SnIasLGA~Kkl~~~L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~aK-~s~ 709 (716)
|||++||++|++.++++|+ +..|+|||||+|++||..||+.|+||+|||||| .++
T Consensus 251 CNv~vlGk~kk~l~gfst~------------------------~~~~~~Gyly~s~ivQk~Ppdl~~ka~Rl~aAKvtLA 306 (492)
T KOG2574|consen 251 CNVQVLGKQKKTLIGFSTT------------------------SSLPHTGYLYASDIVQKTPPDLRKKAARLVAAKVTLA 306 (492)
T ss_pred chhhhhhccchhccccccc------------------------cccCccceeeHHhHhhhcCccHHHHHHHHHHHHHHHH
Confidence 9999999999987765553 347999999999999999999999999999999 667
Q ss_pred cccccC
Q psy10021 710 SRARVT 715 (716)
Q Consensus 710 ~r~~~~ 715 (716)
||+|.+
T Consensus 307 ARVDa~ 312 (492)
T KOG2574|consen 307 ARVDAG 312 (492)
T ss_pred HHhhcc
Confidence 787753
No 6
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=100.00 E-value=2.7e-41 Score=322.01 Aligned_cols=121 Identities=51% Similarity=0.796 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhhhhhhhHHHhhhhhhc
Q psy10021 570 NILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNL 649 (716)
Q Consensus 570 ~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIasLGA~Kkl~~~L~t~ 649 (716)
+|.++|+++++|+++|++|.+||++||..||||||+|||+.||||||++||||.+||+|||||
T Consensus 1 ~I~~~~~~~~~L~~~r~~l~~yi~~rm~~iAPNLsaLvG~~vaA~Li~~aGgL~~Lak~Pasn----------------- 63 (150)
T PF01798_consen 1 NILSACDEVISLSEYRKELLEYIESRMSEIAPNLSALVGSSVAARLISHAGGLENLAKMPASN----------------- 63 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS-HHH-----------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHHHHCcHHHHHHHHHcccHHHHHhCCHhh-----------------
Confidence 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhcccc-cccccccc
Q psy10021 650 AKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQP-GSASRARV 714 (716)
Q Consensus 650 ~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~aK-~s~~r~~~ 714 (716)
||+|||||++|++|++++++|||||||||++|+++|+++||||+||||+| +.+||.|+
T Consensus 64 -------iq~lGaeK~~~~~l~~~~~~pk~G~i~~~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~ 122 (150)
T PF01798_consen 64 -------IQVLGAEKALFRGLKTKAKTPKYGYIYQSDLVQKAPPKLRGKAARMLAAKCALAARIDA 122 (150)
T ss_dssp -------HTTSTCHHHHHHHHCCT-SSTSSSGGGGSHHHHTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHhHHHHhHHhcccCCCCCeeEEecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 66788886
No 7
>KOG2573|consensus
Probab=99.93 E-value=7.8e-27 Score=248.30 Aligned_cols=114 Identities=29% Similarity=0.436 Sum_probs=89.4
Q ss_pred HHHHHHhhhhhcccccccchhhHHHHHHHHHhhhhhccCCCcccccchhhhHHHHHHHHHHhhcccccCCc---------
Q psy10021 203 IILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLRRLSG--------- 273 (716)
Q Consensus 203 ~~~~~~~~~~~~~~~~~kg~~~~~l~~k~~~a~r~d~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~--------- 273 (716)
|+..| +++||+++++||||||||||||||||+|||||||+||++||+.||+|||++|.||+||..||++-
T Consensus 351 GLIyh-SsfigrA~akNKGRISRyLAnKCSIAsrIDcFse~pts~fGe~Lr~qVEeRL~fy~tg~~p~kn~~vmkea~e~ 429 (498)
T KOG2573|consen 351 GLIYH-SSFIGRAGAKNKGRISRYLANKCSIASRIDCFSEDPTSVFGEKLREQVEERLEFYETGEAPRKNSDVMKEAMEA 429 (498)
T ss_pred eeEee-cchhhhhhccccchHHHHHHhhccHHHhhhhcccCCchHHHHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHH
Confidence 55556 89999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ---------------chHHHHHHHHhhhhhhhhhhch--hhccccccCCCCCCCCcccccc
Q psy10021 274 ---------------TTKAKAKLEKYHGKRLEKKKFK--TEFDAAEETPATPDTSSSGKKK 317 (716)
Q Consensus 274 ---------------~~~~~~~~~~~~~k~~~~~k~~--~~a~~~~e~~~~p~~~~~~k~k 317 (716)
..|..+|.++|+.|..||+++. ...-+..+|++++++...+|||
T Consensus 430 ~~~~~~~~~~e~e~~~~e~~ek~~ek~~k~~kk~kKek~~~~~~~~~~~~~~dd~~ekkKk 490 (498)
T KOG2573|consen 430 YNGISRDSAPEDEASAKEKPEKDEEKEKKKEKKGKKEKRAEEGEKKNNSAERDDGKEKKKK 490 (498)
T ss_pred hcccccccchhhhhhhhhhhhhhhhhhchhhccchhhhhhhcccccccccccccccccccc
Confidence 2345566777777776666553 2233333455554544443333
No 8
>KOG2572|consensus
Probab=99.91 E-value=1.7e-24 Score=230.64 Aligned_cols=257 Identities=37% Similarity=0.484 Sum_probs=173.3
Q ss_pred hhchhhccccccCCCCCCCCcccccccccccccccccccCCCCCchhhhhhhhHhhhhccccCCCCccccCchhhHHhHH
Q psy10021 292 KKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKK 371 (716)
Q Consensus 292 ~k~~~~a~~~~e~~~~p~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~g~~~~~~~k~ 371 (716)
+||..+|.|.+..+...++.-++ .=+|||+.+ . .....+++|.+|--+++++-.+
T Consensus 48 ~kf~~ta~alea~~~l~eGkvs~---~L~k~lk~~-~---~~etLaVaD~KLgn~i~ekL~~------------------ 102 (498)
T KOG2572|consen 48 EKFDSTAEALEAVTALAEGKVSS---GLEKFLKLN-K---KKETLAVADAKLGNAIKEKLSI------------------ 102 (498)
T ss_pred HhhhhHHHHHHHHHHHHcCCcch---hHHHHHHhh-c---cCCeeeeccHHHhHHHHHhhcc------------------
Confidence 57889999999988888777655 456677777 1 3445888999999888888221
Q ss_pred HhhhhcccccCCCCccchhhhhhhhcccccccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccCh
Q psy10021 372 KKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDN 451 (716)
Q Consensus 372 ~~~~~~~~v~~~~~~~~~lgLaHslSR~Klkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn 451 (716)
+. | -|..++.+++.||+ |++||...+.++
T Consensus 103 --------------------------------~~-------v--------~~~~v~el~RgiRs----~l~el~~g~~~~ 131 (498)
T KOG2572|consen 103 --------------------------------NC-------V--------HDSAVMELLRGIRS----QLTELISGLNDS 131 (498)
T ss_pred --------------------------------ee-------e--------cchhHHHHHHHHHH----HHHHHhccCChh
Confidence 10 0 12345778899999 678888777776
Q ss_pred HHHHHHHHHhhhcccchhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcC
Q psy10021 452 VAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTR 531 (716)
Q Consensus 452 ~~YaKvVk~IGlrHSLSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r 531 (716)
.. .. +.+|++|+++|++++|++++.|.||||+|.|||++|+|+|+|.||||||||||||||.+||.|++.|++++..
T Consensus 132 dl-~~--msLglaHslar~Klkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFPEL~kii~dn~~Yak~vk~ 208 (498)
T KOG2572|consen 132 DL-AA--MSLGLAHSLARYKLKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFPELAKIIQDNYAYAKLVKA 208 (498)
T ss_pred hh-hH--HHHHHHHHHHhhhcccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHH
Confidence 53 33 6899999999999999999999999999999999999999999999999999999999999999999886532
Q ss_pred CCCCcchhhccCChhHHHHHHHHHhhhcCCCCCHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhh
Q psy10021 532 DKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILL-LCD--QVLEISSYRGQLYDYLKSRMMAVAPNLTILMG 608 (716)
Q Consensus 532 ~nl~~~dLseILp~e~i~~I~~AAstSmGteLSeeDL~~I~~-lcd--~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG 608 (716)
.. +.. .+++.- =++|-+++++.... +++ +..++.+.--.-..-+...+..++-- .+.+-
T Consensus 209 mG---------------~r~-~~a~~d-~sEil~eeiE~~~k~aAeiSMgteis~~Dl~nI~~l~dqVle~aey-R~qL~ 270 (498)
T KOG2572|consen 209 MG---------------VRC-NAASLD-FSEILPEEIEAELKEAAEISMGTEISDSDLLNIKELCDQVLELAEY-RDQLI 270 (498)
T ss_pred Hh---------------Hhh-hhhccc-HHhhchHHHHHHHHhhhhhhhcccccHhhHHhHHHHHHHHHHHHHH-HHHHH
Confidence 10 000 111111 12333444443322 322 11111111100011111122222222 23455
Q ss_pred HHHHHHHHHhcCChhhhhcCCCchhhhhhhhH-HHhhhhhhccC
Q psy10021 609 ELVGARLVAQAGSLLNLAKHPASTVQILGAEK-ALFRSLLNLAK 651 (716)
Q Consensus 609 ~~VAARLIShAGSL~nLAKmPASnIasLGA~K-kl~~~L~t~~k 651 (716)
..+-.|+-+.|..|++|.. .++|++- ...++|.++++
T Consensus 271 dylknrM~~iAPnLTaLvG------ElVGaRlIshaGSL~nLaK 308 (498)
T KOG2572|consen 271 DYLKNRMRTIAPNLTALVG------ELVGARLISHAGSLFNLAK 308 (498)
T ss_pred HHHHHHHHhhcchHHHHHH------HHHHHHHHHhhhhHHHHhh
Confidence 7788899999999999955 6788877 55666666644
No 9
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=6.1e-19 Score=189.56 Aligned_cols=203 Identities=30% Similarity=0.438 Sum_probs=137.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhcccchhhccccCCCchhHHHHHHHHhHHHHHHHH
Q psy10021 418 LLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKEL 497 (716)
Q Consensus 418 LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D~~IIQAIsLLDeIDKEI 497 (716)
..+..+...+.+...+++ ||++|.... ..+|.+ ..+|..|.++|.+++++.++.|++|||+|++||+||++|
T Consensus 61 ~~~~~~~~~~~~r~~~~~----~~~~l~~~~--~~d~~~--~~~~~~~~~sr~kv~~~~~~~D~~iiqai~~lddiDk~i 132 (395)
T COG1498 61 AFEIPSEVGEDLRENAEE----ALGELSSSD--EDDYYR--MLLGLGHELSRIKVREEVDKEDKLIIQAIEALDDIDKEI 132 (395)
T ss_pred cccCCcHHHHHHHHHHHH----HHHHhcccc--hHHHHH--HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 334456667777777777 567777644 455665 467888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCccccccccccccccc----CcCCCCCcchhhccCChhHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q psy10021 498 NNYMMRCREWYGWHFPELGKIVTDNLKRNDN----STRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILL 573 (716)
Q Consensus 498 NlLhmRLREWYS~HFPELeSIV~DpL~Y~kv----~~r~nl~~~dLseILp~e~i~~I~~AAstSmGteLSeeDL~~I~~ 573 (716)
|.++||+|||||||||||++||+|+.+|+.+ +++.+++.+.+..+- ..+-......++..+-+.-.+-+-.-
T Consensus 133 N~~~~RlrEWY~~hFPEL~~lv~~~~~Y~~~V~~~g~~~~~~~~~~~~l~-~~~~~~~~~i~~aA~~SmG~~~~~~D--- 208 (395)
T COG1498 133 NLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGNRENINKESLKDLG-FALPDIAIKIAEAAKDSMGADLSEED--- 208 (395)
T ss_pred HHHHHHHHHHHhhcCcchhhhcccHHHHHHHHHHHcchhccchhhHHHHh-hhcchHHHHHHHHhhcccccCCChhh---
Confidence 9999999999999999999999999999864 455555555553321 11111011111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhhhhhhhH-HHhhhhhhccC
Q psy10021 574 LCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEK-ALFRSLLNLAK 651 (716)
Q Consensus 574 lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIasLGA~K-kl~~~L~t~~k 651 (716)
-+.|..+++.-.+|.+|=+ =++..|-.++=..|..|+.|+. .+|||+- .++++|..+++
T Consensus 209 -i~~i~~~ae~i~~L~~~R~------------~l~~Yi~~~M~~vAPNlt~LVG------~~lgARLIs~AGgL~~LAk 268 (395)
T COG1498 209 -IDNIRELAEIILELYELRE------------QLEEYIESKMSEIAPNLTALVG------PVLGARLISHAGGLTRLAK 268 (395)
T ss_pred -HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhCccHHHHHh------HHHHHHHHHHhcCHHHHHh
Confidence 1235555555555555544 3556667777777888888866 6788888 77777777643
No 10
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.78 E-value=1.8e-19 Score=145.44 Aligned_cols=53 Identities=53% Similarity=0.999 Sum_probs=50.8
Q ss_pred hHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhh
Q psy10021 411 MIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGL 463 (716)
Q Consensus 411 mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGl 463 (716)
||||||+++|++|+|||.++||+|||||||||||.++++|+.+|+++|+.+|+
T Consensus 1 ~Ii~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~n 53 (53)
T PF08060_consen 1 LIIQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIGN 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTTS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999985
No 11
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=99.71 E-value=2.4e-17 Score=179.38 Aligned_cols=97 Identities=34% Similarity=0.543 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCccchhh---cccChHHHHHHHHHhhhcccchhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHH
Q psy10021 428 NYMMRCREWYGWHFPELGK---IVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRC 504 (716)
Q Consensus 428 ~~~mRiREWYswHFPEL~k---IV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRL 504 (716)
...+.||. ||+++.. +..+..+|.+ ...|+.|+++|.+|++++++.|++|||+|+++|+||++||.+||||
T Consensus 89 ~~~r~iR~----~~~~~~~~~gl~~~~~~~~~--~~~~~~~~~sr~klk~~~~~~D~~iiqai~~ld~ldk~in~~~~RL 162 (414)
T PRK14552 89 KIGEFLRE----NLPELGVEYGFFEDEEEFYE--KLHEWSVELTRRKLRSAAQKRDKLAIQAIRAIDDIDKTINLFSERL 162 (414)
T ss_pred HHHHHHHh----HHHHHHHHhcccCCHHHHHH--HHHHHhHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666 6666653 2445666766 4678899999999999999999999999999999999999999999
Q ss_pred HHHhhccCCcccccccccccccccCc
Q psy10021 505 REWYGWHFPELGKIVTDNLKRNDNST 530 (716)
Q Consensus 505 REWYS~HFPELeSIV~DpL~Y~kv~~ 530 (716)
+|||+||||||+++|+|+.+|++++.
T Consensus 163 rewY~~~FPEL~~iv~d~~~Y~~iV~ 188 (414)
T PRK14552 163 REWYSLHFPELDELVKKHEEYVKLVS 188 (414)
T ss_pred HHHHHhhCcCHHhhcCChHHHHHHHH
Confidence 99999999999999999999988754
No 12
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=99.69 E-value=2e-17 Score=139.54 Aligned_cols=66 Identities=47% Similarity=0.711 Sum_probs=63.5
Q ss_pred CeEeeccCcceeeeeeccchhccch-hhHHHhcCChhhhhcceeeccccCCCCHHHHHHHHHHhhcc
Q psy10021 1 MLVLFETPAGYAFFKLLDEKKLQEA-DNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEG 66 (716)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (716)
|+||||||+|||||++.|++++... +++++.|+++++++++++|++|.||.|+.+||+++++++||
T Consensus 1 m~vLfEtaaGyaLF~v~~~~~~~~~~~~v~~~~~~~~~f~k~vkL~aF~pF~s~~~ALe~~~aiseG 67 (67)
T PF08156_consen 1 MLVLFETAAGYALFKVKDEKDEIGSDEEVQKSFSDPEKFSKIVKLKAFSPFKSAEEALENANAISEG 67 (67)
T ss_pred CEEEEcCCCeeeeeEEechhhhhccHHHHHHHHcCHHHHhhhhhhhhccCCCCHHHHHHHHHHhhcC
Confidence 8999999999999999998888855 69999999999999999999999999999999999999998
No 13
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.66 E-value=4.2e-17 Score=131.77 Aligned_cols=49 Identities=49% Similarity=0.905 Sum_probs=45.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCc
Q psy10021 482 MIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNST 530 (716)
Q Consensus 482 ~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~ 530 (716)
||+|+|+++++||+|||.+|+|+||||++|||||+++|+||.+|++++.
T Consensus 1 ~Ii~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~ 49 (53)
T PF08060_consen 1 LIIQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVK 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999997653
No 14
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=99.19 E-value=6.1e-12 Score=121.08 Aligned_cols=62 Identities=39% Similarity=0.545 Sum_probs=55.8
Q ss_pred HHHHHHhhhhhcccccccchhhHHHHHHHHHhhhhhccCCCcccc-cchhhhHHHHHHHHHHhh
Q psy10021 203 IILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIE-LGTDHRAKLEIKLRLLEE 265 (716)
Q Consensus 203 ~~~~~~~~~~~~~~~~~kg~~~~~l~~k~~~a~r~d~~~~~~~~~-~g~~~~~~~e~~~~~~~~ 265 (716)
|+..+ ..+|..+|..++|||+||||+||+||+|||+|+++|..+ ||..+|+++|++|..+++
T Consensus 87 G~i~~-~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~G~~~re~i~~ki~k~~e 149 (150)
T PF01798_consen 87 GYIYQ-SDLVQKAPPKLRGKAARMLAAKCALAARIDAFSESPDGSAFGKKLREEIEKKIEKLQE 149 (150)
T ss_dssp SGGGG-SHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEec-CHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 66666 578899999999999999999999999999999999995 999999999999999886
No 15
>KOG2574|consensus
Probab=98.94 E-value=1.4e-09 Score=118.26 Aligned_cols=114 Identities=19% Similarity=0.300 Sum_probs=99.3
Q ss_pred chhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhcccchhhcccc--CCCc--------
Q psy10021 409 DTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKF--SPDK-------- 478 (716)
Q Consensus 409 D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHSLSR~KLk~--s~~k-------- 478 (716)
=.+||.++.++.+||.||+.++.+||+||+..||||..+|++..+|+++|+.+|+.-.....++.. -.++
T Consensus 94 ykLIVd~n~iavdI~nEI~ivH~FikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~~~~~L~~atIMVvsv 173 (492)
T KOG2574|consen 94 YKLIVDCNQIAVDIENEIVIVHNFIKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLELQAILPSATIMVVSV 173 (492)
T ss_pred eeeeechhhhhhhhhhhHHHHHHHHHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhhhhccCccceEEEEEE
Confidence 356999999999999999999999999999999999999999999999999999965555554432 1111
Q ss_pred -------------hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCccccccccc
Q psy10021 479 -------------VDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDN 522 (716)
Q Consensus 479 -------------~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~Dp 522 (716)
.-..|..|++++.+|++.-..+++||....+.--|.|+-||...
T Consensus 174 TasTT~G~~Lp~d~~~~v~eAc~~a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~ 230 (492)
T KOG2574|consen 174 TASTTQGNKLPEDELEQVLEACEMAEQLNKLKEKIYEYVESRMSFIAPNLSAIVGST 230 (492)
T ss_pred EeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHhhhcHH
Confidence 11269999999999999999999999999999999999999875
No 16
>KOG4715|consensus
Probab=30.37 E-value=1.6e+02 Score=32.99 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=32.5
Q ss_pred CcccCCCcchhHHhHhHHHHhhhhhhcccccCCCChHHHHHHHHHHHhhhh
Q psy10021 162 SVETGHTKPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLI 212 (716)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (716)
...|-|+--.|-.|.|.|--.-|-....-.--.-.|.-=|..+..++.+|.
T Consensus 184 g~stkhla~arf~rN~rLIsei~SesvVpDvrsVVtt~RMqvlkrQv~SL~ 234 (410)
T KOG4715|consen 184 GFSTKHLATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLM 234 (410)
T ss_pred ccchhhhhhhhhhhhhHHHHHHhccccccchhhhhhHHHHHHHHHHHHHHH
Confidence 345778888888999988777776554433333344455666666655554
No 17
>KOG2014|consensus
Probab=26.51 E-value=97 Score=34.53 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhhcCCC---CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcC
Q psy10021 547 VEEKVKEAAEISMGTE---ISDDDIENILLLCDQVLE-ISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAG 620 (716)
Q Consensus 547 ~i~~I~~AAstSmGte---LSeeDL~~I~~lcd~Ii~-L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAG 620 (716)
..+.+++.-.+|-|.+ .+++|++.+..+-+.+.. ..-.-.++.+|+..--..+||- ||.||..||...|..-+
T Consensus 228 ~ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~Pv-~AvVGGivaQevIk~is 304 (331)
T KOG2014|consen 228 FLLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAPV-CAVVGGILAQEVIKAIS 304 (331)
T ss_pred ehHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCch-hhhhhhHhHHHHHHHhh
Confidence 4466666677776654 558999988887766665 5555556668888888888885 99999999998887543
Done!