Query psy10021
Match_columns 716
No_of_seqs 319 out of 761
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 15:51:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pla_A NOP5, PRE mRNA splicing 100.0 1.4E-87 4.6E-92 714.1 18.7 237 387-714 115-353 (388)
2 2nnw_A NOP5/NOP56 related prot 100.0 5.5E-84 1.9E-88 685.6 18.3 237 387-714 116-354 (376)
3 3icx_A PRE mRNA splicing prote 100.0 1.3E-74 4.5E-79 587.6 12.8 218 407-715 2-221 (255)
4 2ozb_B U4/U6 small nuclear rib 100.0 1.9E-70 6.6E-75 558.8 14.2 221 405-714 13-234 (260)
5 1nt2_B Conserved hypothetical 100.0 3.8E-58 1.3E-62 467.2 2.8 185 380-714 44-235 (258)
6 3id6_A NOP5, PRE mRNA splicing 100.0 1E-54 3.6E-59 444.7 18.0 148 387-601 115-263 (268)
7 3gqu_A NOP5P protein; RNA bind 100.0 8.8E-39 3E-43 307.6 -0.2 108 583-714 17-125 (169)
8 3pla_A NOP5, PRE mRNA splicing 99.9 4.4E-22 1.5E-26 212.5 11.2 179 440-653 96-291 (388)
9 3id6_A NOP5, PRE mRNA splicing 99.9 1.3E-22 4.4E-27 208.1 3.9 96 430-531 90-188 (268)
10 2nnw_A NOP5/NOP56 related prot 99.8 1.6E-19 5.3E-24 192.6 10.3 172 440-651 105-290 (376)
11 3icx_A PRE mRNA splicing prote 99.7 8.5E-18 2.9E-22 171.5 9.8 143 478-653 2-158 (255)
12 2ozb_B U4/U6 small nuclear rib 99.6 5.9E-16 2E-20 158.4 9.8 146 475-652 12-171 (260)
13 3gqu_A NOP5P protein; RNA bind 99.1 3.4E-11 1.2E-15 116.5 2.6 59 203-265 90-148 (169)
14 1nt2_B Conserved hypothetical 99.0 1.2E-10 4.2E-15 119.2 2.8 58 203-265 200-257 (258)
15 1rw2_A ATP-dependent DNA helic 66.4 15 0.0005 35.1 7.4 89 153-258 19-110 (152)
16 1uap_A Procollagen C-proteinas 42.6 4 0.00014 39.3 -0.8 23 141-163 3-25 (154)
17 2guh_A Putative TETR-family tr 27.7 21 0.00072 33.2 1.5 23 213-235 66-88 (214)
18 3ufe_A Transcriptional antiter 26.4 2.8E+02 0.0097 23.1 9.1 85 423-515 13-97 (111)
19 3na2_A Uncharacterized protein 24.6 30 0.001 32.6 1.9 26 165-190 20-45 (172)
20 3ctg_A Glutaredoxin-2; reduced 24.3 30 0.001 30.9 1.8 37 233-270 86-122 (129)
21 3efy_A CIF (cell cycle inhibit 23.0 44 0.0015 32.8 2.7 25 672-696 74-98 (195)
22 3qmx_A Glutaredoxin A, glutare 22.8 94 0.0032 26.3 4.5 38 232-269 57-94 (99)
23 3qc1_A Immunoglobulin-binding 22.3 1.1E+02 0.0037 31.1 5.6 21 482-502 221-241 (243)
24 2k1o_A Putative; repressor, tr 21.6 27 0.00094 29.0 0.9 19 141-159 3-21 (66)
25 3bni_A Putative TETR-family tr 20.7 29 0.001 32.2 1.0 20 215-234 72-91 (229)
No 1
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=100.00 E-value=1.4e-87 Score=714.06 Aligned_cols=237 Identities=38% Similarity=0.590 Sum_probs=229.4
Q ss_pred cchhhhhhhhcccccccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhccc
Q psy10021 387 LNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHS 466 (716)
Q Consensus 387 ~~~lgLaHslSR~Klkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHS 466 (716)
.+++||+|++||+||+|+++++|+||||||+++||||+|||.|+||||||||||||||.++|+||.+|+++|+.+|+
T Consensus 115 ~~~~~l~~~~sr~kvk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~hFPEL~~iV~d~~~Yak~V~~ign--- 191 (388)
T 3pla_A 115 NFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGD--- 191 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGTTTCCCHHHHHHHHHHTCS---
T ss_pred HHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhcCCHHHHHHHHHHhcC---
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhcc-CCh
Q psy10021 467 LSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEI-LPE 545 (716)
Q Consensus 467 LSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseI-Lp~ 545 (716)
+.+++..+|.++ +|+
T Consensus 192 ----------------------------------------------------------------r~~~~~~~l~~l~l~~ 207 (388)
T 3pla_A 192 ----------------------------------------------------------------RGFLTIDSLKELGFNE 207 (388)
T ss_dssp ----------------------------------------------------------------GGGCCHHHHHTTTCCH
T ss_pred ----------------------------------------------------------------cccCChhhHhhcCCCH
Confidence 345566677787 899
Q ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhh
Q psy10021 546 DVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNL 625 (716)
Q Consensus 546 e~i~~I~~AAstSmGteLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nL 625 (716)
++++.|.++|++|||++||++|+++|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+|
T Consensus 208 ~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~L 287 (388)
T 3pla_A 208 QRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDEL 287 (388)
T ss_dssp HHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhhhhhhhHHHhhhhhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhccc
Q psy10021 626 AKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQ 705 (716)
Q Consensus 626 AKmPASnIasLGA~Kkl~~~L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~a 705 (716)
||||||| ||||||||||||+|+|+++||||||||||++||++|+++||||+|+||+
T Consensus 288 AK~PAst------------------------IQiLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~~ap~~~rgKiaR~LAa 343 (388)
T 3pla_A 288 AKMPAST------------------------IQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAA 343 (388)
T ss_dssp HTSCHHH------------------------HTTSSCHHHHHHHHHHTCCCCSCSGGGGSHHHHHSCHHHHHHHHHHHHH
T ss_pred hhCChHH------------------------HHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhhCCHHHhHHHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999
Q ss_pred c-cccccccc
Q psy10021 706 P-GSASRARV 714 (716)
Q Consensus 706 K-~s~~r~~~ 714 (716)
| +.+||+|+
T Consensus 344 K~aLAARiD~ 353 (388)
T 3pla_A 344 KLAIAARVDA 353 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcc
Confidence 9 66778876
No 2
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=100.00 E-value=5.5e-84 Score=685.56 Aligned_cols=237 Identities=37% Similarity=0.553 Sum_probs=215.9
Q ss_pred cchhhhhhhhcccccccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhccc
Q psy10021 387 LNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHS 466 (716)
Q Consensus 387 ~~~lgLaHslSR~Klkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHS 466 (716)
.+++||+|++||+||+|+++++|+||||||+++||||+|||.|+||||||||||||||.+||+|+.+|+++|..+|++
T Consensus 116 ~~~~~l~h~~sr~Kvk~~~~k~D~~Iiqai~llddlDkeIn~~~~rlrewY~~~FPEL~~lV~d~~~Y~k~V~~ig~~-- 193 (376)
T 2nnw_A 116 EEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHR-- 193 (376)
T ss_dssp HHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHTCSG--
T ss_pred HHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHhhcCCHHHHHHHHHHhCCc--
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred chhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhcc-CCh
Q psy10021 467 LSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEI-LPE 545 (716)
Q Consensus 467 LSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseI-Lp~ 545 (716)
.+++.++|.++ +++
T Consensus 194 -----------------------------------------------------------------~~l~~~~L~~i~l~~ 208 (376)
T 2nnw_A 194 -----------------------------------------------------------------DNINEEVLRELGLSE 208 (376)
T ss_dssp -----------------------------------------------------------------GGCCSHHHHHTTCCH
T ss_pred -----------------------------------------------------------------cccCHhhHHHcCCCH
Confidence 33455578888 999
Q ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhh
Q psy10021 546 DVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNL 625 (716)
Q Consensus 546 e~i~~I~~AAstSmGteLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nL 625 (716)
++++.|.++|++|||++||++|+++|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||++||||.+|
T Consensus 209 ~~~~~I~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLvG~~vaArLIs~AGgL~~L 288 (376)
T 2nnw_A 209 EKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLREL 288 (376)
T ss_dssp HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhChHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhhhhhhhHHHhhhhhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhccc
Q psy10021 626 AKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQ 705 (716)
Q Consensus 626 AKmPASnIasLGA~Kkl~~~L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~a 705 (716)
||||||| ||||||||||||||+|+++|||||+||||++||++||++||||+|+||+
T Consensus 289 AK~PAst------------------------IQiLGAeKalf~~lkt~~~tPk~G~Iy~s~~V~~ap~~~kgKiaR~LAa 344 (376)
T 2nnw_A 289 AMMPSST------------------------IQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAG 344 (376)
T ss_dssp HHSCHHH------------------------HHTTTCC-------------CCCCGGGGSHHHHTSCHHHHHHHHHHHHH
T ss_pred hhCChHH------------------------HHHhccchhhHHHhccCCCCCCceEEeCCHhhccCCHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999
Q ss_pred cc-ccccccc
Q psy10021 706 PG-SASRARV 714 (716)
Q Consensus 706 K~-s~~r~~~ 714 (716)
|+ .+||+|+
T Consensus 345 K~aLAARiD~ 354 (376)
T 2nnw_A 345 KLAIAARVDY 354 (376)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 95 6788886
No 3
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-74 Score=587.61 Aligned_cols=218 Identities=39% Similarity=0.628 Sum_probs=190.6
Q ss_pred ccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhcccchhhccccCCCchhHHHHHH
Q psy10021 407 KVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQA 486 (716)
Q Consensus 407 k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D~~IIQA 486 (716)
|+|+||||||+++||||||||.|+||||||||||||||.++|+||.+|+++|+.+|+
T Consensus 2 k~D~~Iiqai~lld~iDkein~~~~rvrewY~~~FPEL~~iv~d~~~Yak~V~~ig~----------------------- 58 (255)
T 3icx_A 2 KRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGD----------------------- 58 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHCCCHHHHHHHHHHTCS-----------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcchHhhcCCHHHHHHHHHHHcC-----------------------
Confidence 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhcc-CChhHHHHHHHHHhhhcCCCCCH
Q psy10021 487 VSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEI-LPEDVEEKVKEAAEISMGTEISD 565 (716)
Q Consensus 487 IsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseI-Lp~e~i~~I~~AAstSmGteLSe 565 (716)
+.+++.++|.++ +++++++.|.++|++|||++||+
T Consensus 59 --------------------------------------------~~~~~~~~l~~l~l~~~~~~~i~~aa~~S~G~~ls~ 94 (255)
T 3icx_A 59 --------------------------------------------RGFLTIDSLKELGFNEQRINRILDAAKKSIGADISE 94 (255)
T ss_dssp --------------------------------------------GGGCCHHHHHTTTCCHHHHHHHHHHHHTCCCCCCCH
T ss_pred --------------------------------------------CCCCChhhHHHccCCHHHHHHHHHHHHHcCCCCCCH
Confidence 345566677787 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhhhhhhhHHHhhh
Q psy10021 566 DDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRS 645 (716)
Q Consensus 566 eDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIasLGA~Kkl~~~ 645 (716)
+|+++|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||++||||.+||||||||
T Consensus 95 ~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAk~PAst------------- 161 (255)
T 3icx_A 95 DDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPAST------------- 161 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHHHHHHHHHHSSHHHHTTSCHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccHHHHHHHHHcCCHHHHhhCChHH-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhcccc-ccccccccC
Q psy10021 646 LLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQP-GSASRARVT 715 (716)
Q Consensus 646 L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~aK-~s~~r~~~~ 715 (716)
||||||||||||+|+|+++||||||||||++||++|+++||||+|+||+| +.+||.|+-
T Consensus 162 -----------IqiLGAeKalfr~lkt~~~tPk~G~Iy~s~~V~~ap~~~rgkiaR~LAaK~aLAARiD~~ 221 (255)
T 3icx_A 162 -----------IQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAF 221 (255)
T ss_dssp -----------HTTCC-------------------GGGGSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------HHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhcCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999 667788863
No 4
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=100.00 E-value=1.9e-70 Score=558.76 Aligned_cols=221 Identities=28% Similarity=0.480 Sum_probs=199.6
Q ss_pred cCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhcccchhhccccCCCchhHHHH
Q psy10021 405 PDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIV 484 (716)
Q Consensus 405 ~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D~~II 484 (716)
.+..+.||||||+++|+||||||.|+||||||||||||||.+||+||.+|+++|+.+|++.+++.
T Consensus 13 ~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig~~~~~~~--------------- 77 (260)
T 2ozb_B 13 AAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCK--------------- 77 (260)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCT---------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhCCchhhcc---------------
Confidence 45679999999999999999999999999999999999999999999999999999999432211
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhccCChhHHHHHHHHHhhhcCCCCC
Q psy10021 485 QAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEIS 564 (716)
Q Consensus 485 QAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseILp~e~i~~I~~AAstSmGteLS 564 (716)
+..+|.++|++++++.|+++|++|||++|+
T Consensus 78 --------------------------------------------------~~~~L~~iL~~~~~~~i~~aA~~S~G~~ls 107 (260)
T 2ozb_B 78 --------------------------------------------------NNENLQQILTNATIMVVSVTASTTQGQQLS 107 (260)
T ss_dssp --------------------------------------------------TCTTGGGTSCHHHHHHHHHHHHSCCCCCCC
T ss_pred --------------------------------------------------chHHHHHHcCHHHHHHHHHHHHhcCCCCCC
Confidence 235689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhhhhhhhHHHhh
Q psy10021 565 DDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFR 644 (716)
Q Consensus 565 eeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIasLGA~Kkl~~ 644 (716)
++|+++|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+||||||||
T Consensus 108 ~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~vaArLI~~AGsL~~Lak~Past------------ 175 (260)
T 2ozb_B 108 EEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACN------------ 175 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTSCHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcHHHHHHHHHhCCHHHHhhCCcHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCchhhhhhhhHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhccccc-ccccccc
Q psy10021 645 SLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQPG-SASRARV 714 (716)
Q Consensus 645 ~L~t~~k~p~S~IQILGAEKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~aK~-s~~r~~~ 714 (716)
|||||||||||++|+|+++||||||||||++||++||++||||+|+||+|+ .+||+|+
T Consensus 176 ------------iqiLGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgk~~R~lA~K~alAaRiD~ 234 (260)
T 2ozb_B 176 ------------IMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDS 234 (260)
T ss_dssp ------------HTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHhcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999995 7788886
No 5
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=100.00 E-value=3.8e-58 Score=467.18 Aligned_cols=185 Identities=26% Similarity=0.354 Sum_probs=156.4
Q ss_pred ccCCCC-ccchhhhhhhhcccccccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHH
Q psy10021 380 VEDETD-PLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTI 458 (716)
Q Consensus 380 v~~~~~-~~~~lgLaHslSR~Klkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvV 458 (716)
++++.+ ....+|++|++||+||+|++++.|+||||+|+++||||+|||.|+|||||||||
T Consensus 44 ~~~~~~y~~~l~~~~~~~sr~kvk~~~~~~D~~Iiqai~lld~idkein~~~~rvrewY~~------------------- 104 (258)
T 1nt2_B 44 KALGKDYYRILRKTALAVSEKMVEKELRREDRYVVALVKALEEIDESINMLNEKLEDIRAV------------------- 104 (258)
T ss_dssp TTSCSTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHTT-------------------
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------------
Confidence 344444 567899999999999999999999999999999999999999999999999997
Q ss_pred HHhhhcccchhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcch
Q psy10021 459 KTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASD 538 (716)
Q Consensus 459 k~IGlrHSLSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~d 538 (716)
|
T Consensus 105 ------------------------------------------------------~------------------------- 105 (258)
T 1nt2_B 105 ------------------------------------------------------K------------------------- 105 (258)
T ss_dssp ------------------------------------------------------C-------------------------
T ss_pred ------------------------------------------------------C-------------------------
Confidence 0
Q ss_pred hhccCChhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHh
Q psy10021 539 LSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQ 618 (716)
Q Consensus 539 LseILp~e~i~~I~~AAstSmGteLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLISh 618 (716)
+| +||+ .+|+++++|+++|++|.+||++||..||||||+|||+.||||||++
T Consensus 106 ------------------~S---~ise-------~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~vaArLI~~ 157 (258)
T 1nt2_B 106 ------------------ES---EITE-------KFEKKIRELRELRRDVEREIEEVMEKIAPNMTELVGAKVAAKLLER 157 (258)
T ss_dssp ------------------CC---TTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHHHHHHHHH
T ss_pred ------------------CC---cCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCcHHHHHHHHH
Confidence 00 2222 7999999999999999999999999999999999999999999999
Q ss_pred cCChhhhhcCCCchhhhhhhhHHHhhhhhhccCCCCchhhhhhhhHHHHHHh---hcC--CCCCceeEEEecccccCCCc
Q psy10021 619 AGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRAL---KTK--RDTPKYGLIYHSQLIGQSST 693 (716)
Q Consensus 619 AGSL~nLAKmPASnIasLGA~Kkl~~~L~t~~k~p~S~IQILGAEKALFraL---ktk--~~tPKyGlIY~s~LV~~aP~ 693 (716)
||||.+|||||||| ||||||||+||++| +|+ +++|||||||||++||++||
T Consensus 158 AGgL~~LAk~PAst------------------------IqiLGAeKalf~~l~~~~t~~~~~~pk~G~Iy~s~~V~~ap~ 213 (258)
T 1nt2_B 158 AGSMERLVRLPASK------------------------IQVIGAEKSLYKAFARMKKGKKAKIPKHGIIFLHPFIRTLPK 213 (258)
T ss_dssp HCSHHHHHTCCHHH------------------------HTTSSCC--------------------CCGGGGSHHHHTSCS
T ss_pred hCCHHHHhhCCHHH------------------------HHHhccchHHHhhhhccccccCCCCCCcceEecCHHHhcCCH
Confidence 99999999999999 99999999999999 998 99999999999999999999
Q ss_pred ccccchhhhccccc-ccccccc
Q psy10021 694 KNKGKMGSYGWQPG-SASRARV 714 (716)
Q Consensus 694 k~KGKiaRmL~aK~-s~~r~~~ 714 (716)
++||||+|+||+|+ .++|+|+
T Consensus 214 ~~rgK~aR~LAaK~aLAARiD~ 235 (258)
T 1nt2_B 214 AKRGKMARFLAAKLAIAAKIDY 235 (258)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999995 6788876
No 6
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-54 Score=444.72 Aligned_cols=148 Identities=32% Similarity=0.550 Sum_probs=140.3
Q ss_pred cchhhhhhhhcccccccCcCccchhHHhHhhhhhHHHHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhccc
Q psy10021 387 LNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHS 466 (716)
Q Consensus 387 ~~~lgLaHslSR~Klkfs~~k~D~mIIQAI~LLDdLDKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHS 466 (716)
.+++||+|+|||+||||+++++|+||||||++|||||||||+|+||||||||||||||.+||+||.+|+++|+.+|+
T Consensus 115 ~~~lgl~hs~sR~Klk~~~~k~D~mIIQai~llDdlDkeiN~~~mRvREWY~~hFPEL~kiV~d~~~Yak~V~~ig~--- 191 (268)
T 3id6_A 115 NFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGD--- 191 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCCHHHHHHHHHHHCS---
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHhccCHHHHHHHHHHhCC---
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhcc-CCh
Q psy10021 467 LSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEI-LPE 545 (716)
Q Consensus 467 LSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseI-Lp~ 545 (716)
|.+++..+|+++ +|+
T Consensus 192 ----------------------------------------------------------------r~~l~~~~l~~i~l~~ 207 (268)
T 3id6_A 192 ----------------------------------------------------------------RGFLTIDSLKELGFNE 207 (268)
T ss_dssp ----------------------------------------------------------------TTSCCHHHHGGGTCCH
T ss_pred ----------------------------------------------------------------cccCCcccHhhcCCCH
Confidence 556777888898 999
Q ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q psy10021 546 DVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAP 601 (716)
Q Consensus 546 e~i~~I~~AAstSmGteLSeeDL~~I~~lcd~Ii~L~e~R~eL~eYLesRM~~IAP 601 (716)
++++.|.+||++|||++||++|+++|..+|+++++|+++|++|.+||++||..+|-
T Consensus 208 ~~~~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~~~ 263 (268)
T 3id6_A 208 QRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAH 263 (268)
T ss_dssp HHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999874
No 7
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=100.00 E-value=8.8e-39 Score=307.61 Aligned_cols=108 Identities=44% Similarity=0.588 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhhhhhhhHHHhhhhhhccCCCCchhhhhhh
Q psy10021 583 SYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQILGA 662 (716)
Q Consensus 583 e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIasLGA~Kkl~~~L~t~~k~p~S~IQILGA 662 (716)
..|..|.+||++||..||||||+|||+.||||||++||||.+||+||||| ||||||
T Consensus 17 ~~~~~L~~Yl~srM~~iAPNLsaLvG~~vaArLI~~AGgL~~LAK~PAsn------------------------IqvLGA 72 (169)
T 3gqu_A 17 IGAGGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSST------------------------IQVLGA 72 (169)
T ss_dssp ---CCHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHHHHTCCSHH------------------------HHTSCC
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHhChHHHHHHHHHhCCHHHHhhCCHHH------------------------HHHHhh
Confidence 46889999999999999999999999999999999999999999999999 999999
Q ss_pred hHHHHHHhhcCCCCCceeEEEecccccCCCcccccchhhhcccc-cccccccc
Q psy10021 663 EKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKMGSYGWQP-GSASRARV 714 (716)
Q Consensus 663 EKALFraLktk~~tPKyGlIY~s~LV~~aP~k~KGKiaRmL~aK-~s~~r~~~ 714 (716)
||+||++|++++++|||||||||++|+++|+++||||+|+||+| +.+||+|+
T Consensus 73 eKalf~~l~t~~~~pk~G~Iy~s~lV~~~p~~~rgK~aR~LAaK~aLAARiD~ 125 (169)
T 3gqu_A 73 EKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDY 125 (169)
T ss_dssp ----------------CCGGGGSHHHHTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCCCCCCEEEeCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999 66678876
No 8
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=99.86 E-value=4.4e-22 Score=212.46 Aligned_cols=179 Identities=26% Similarity=0.379 Sum_probs=126.4
Q ss_pred Cccchhh---cccChHHHHHHHHHhhhcccchhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCccc
Q psy10021 440 HFPELGK---IVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELG 516 (716)
Q Consensus 440 HFPEL~k---IV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELe 516 (716)
|||++.. +..+..+|.+ ..+|++|+++|+++++++++.|+||||||+++|+||+|||.++|||||||+||||||+
T Consensus 96 ~~~~~~~~~g~~~~~~d~~~--~~~~l~~~~sr~kvk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~hFPEL~ 173 (388)
T 3pla_A 96 SLPKVAIDIKFASNEEDYYN--FLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELD 173 (388)
T ss_dssp TTTTHHHHTTSSSSSHHHHH--HHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGT
T ss_pred hHHHHhHhcCCCCChHHHHH--HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchh
Confidence 7888874 3455677766 5889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCcCCCCCcchhhccCChhHHHHHHHHHhhhcCCCCCHHHHHHHHHHH-------------HHHHHHHH
Q psy10021 517 KIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLC-------------DQVLEISS 583 (716)
Q Consensus 517 SIV~DpL~Y~kv~~r~nl~~~dLseILp~e~i~~I~~AAstSmGteLSeeDL~~I~~lc-------------d~Ii~L~e 583 (716)
+||+||++|++++.... +..++ ..+.... + .++++-...|...+ ..|..+++
T Consensus 174 ~iV~d~~~Yak~V~~ig-nr~~~----~~~~l~~--------l--~l~~~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~ 238 (388)
T 3pla_A 174 KLIEDHEEYATIVSRFG-DRGFL----TIDSLKE--------L--GFNEQRINRILDAAKKSIGADISEDDLSAMRMIAN 238 (388)
T ss_dssp TTCCCHHHHHHHHHHTC-SGGGC----CHHHHHT--------T--TCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHhc-CcccC----ChhhHhh--------c--CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999999999875421 22222 2221111 1 24444444444432 33455555
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhhhhhhhH-HHhhhhhhccCCC
Q psy10021 584 YRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEK-ALFRSLLNLAKHP 653 (716)
Q Consensus 584 ~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIasLGA~K-kl~~~L~t~~k~p 653 (716)
.-.+|.+|-. -+-..|-.|+-..|..|..|.. ..+||+- ..+++|.++++.|
T Consensus 239 ~v~~L~e~R~------------~L~~Yl~srM~~iAPNLsaLvG------~~vaArLIs~AGgL~~LAK~P 291 (388)
T 3pla_A 239 TILDLYNIRR------------NLNNYLEGVMKEVAPNVTALVG------PALGARLLSIAGSLDELAKMP 291 (388)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHCHHHHHHHH------HHHHHHHHHHHSSHHHHHTSC
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHhhCCcHHHHhc------cHHHHHHHHHcCCHHHHhhCC
Confidence 5555555544 3445566677777776766654 4577775 5677777776544
No 9
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=99.85 E-value=1.3e-22 Score=208.11 Aligned_cols=96 Identities=31% Similarity=0.520 Sum_probs=85.1
Q ss_pred HHHHHHHhcCCccchhh---cccChHHHHHHHHHhhhcccchhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy10021 430 MMRCREWYGWHFPELGK---IVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCRE 506 (716)
Q Consensus 430 ~mRiREWYswHFPEL~k---IV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLRE 506 (716)
.+.+|. |||+|.. +.++..+|.+ ..+|++|++||+|+++++++.|+||||||+++|+||+|||.++|||||
T Consensus 90 ~~~iR~----~~~~l~~~~G~~~~~~d~~~--~~lgl~hs~sR~Klk~~~~k~D~mIIQai~llDdlDkeiN~~~mRvRE 163 (268)
T 3id6_A 90 SRIFRE----SLPKVAIDIKFASNEEDYYN--FLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLRE 163 (268)
T ss_dssp HHHHHH----TTTHHHHHTTSCSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----hHHHHHHHcCCCCCHHHHHH--HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344564 8888874 3456677766 688999999999999999999999999999999999999999999999
Q ss_pred HhhccCCcccccccccccccccCcC
Q psy10021 507 WYGWHFPELGKIVTDNLKRNDNSTR 531 (716)
Q Consensus 507 WYS~HFPELeSIV~DpL~Y~kv~~r 531 (716)
|||||||||++||+||++|++++..
T Consensus 164 WY~~hFPEL~kiV~d~~~Yak~V~~ 188 (268)
T 3id6_A 164 WYSIHFPELDKLIEDHEEYATIVSR 188 (268)
T ss_dssp HHTTTCTTHHHHCCCHHHHHHHHHH
T ss_pred HhhccCccHHHhccCHHHHHHHHHH
Confidence 9999999999999999999998653
No 10
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=99.79 E-value=1.6e-19 Score=192.62 Aligned_cols=172 Identities=25% Similarity=0.378 Sum_probs=118.7
Q ss_pred CccchhhcccChHHHHHHHHHhhhcccchhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy10021 440 HFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIV 519 (716)
Q Consensus 440 HFPEL~kIV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV 519 (716)
||++|. + .+|.+ ..+|+.|+++|.++++++++.|++|||+|+++|+||+|||.++|||||||+||||||++||
T Consensus 105 ~~~~l~----~-~d~~~--~~~~l~h~~sr~Kvk~~~~k~D~~Iiqai~llddlDkeIn~~~~rlrewY~~~FPEL~~lV 177 (376)
T 2nnw_A 105 NPEEFL----G-ENWFE--EYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELL 177 (376)
T ss_dssp CTHHHH----C-SSHHH--HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHC
T ss_pred HHHHhh----h-hHHHH--HHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHhhc
Confidence 677765 2 33444 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCcCCCCCcchhhccCChhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH-------------HHHHHHHHHH
Q psy10021 520 TDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCD-------------QVLEISSYRG 586 (716)
Q Consensus 520 ~DpL~Y~kv~~r~nl~~~dLseILp~e~i~~I~~AAstSmGteLSeeDL~~I~~lcd-------------~Ii~L~e~R~ 586 (716)
+||++|++++..- -+..++ ..+....| | ++++-...|..+|. .|..+++.-.
T Consensus 178 ~d~~~Y~k~V~~i-g~~~~l----~~~~L~~i--------~--l~~~~~~~I~~aA~~S~G~~ls~~dl~~i~~~~~~v~ 242 (376)
T 2nnw_A 178 PKHPQYVAFVKTV-GHRDNI----NEEVLREL--------G--LSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEID 242 (376)
T ss_dssp CSHHHHHHHHHHT-CSGGGC----CSHHHHHT--------T--CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CCcccc----CHhhHHHc--------C--CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999877532 123333 22222111 2 55555555555443 2333444444
Q ss_pred HHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhhhhcCCCchhhhhhhhH-HHhhhhhhccC
Q psy10021 587 QLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEK-ALFRSLLNLAK 651 (716)
Q Consensus 587 eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~nLAKmPASnIasLGA~K-kl~~~L~t~~k 651 (716)
+|.+|-. -+-..|-.|+...|..|..|.. ..+||+- ..+++|.++++
T Consensus 243 ~L~~~R~------------~l~~yl~~rM~~iAPNLsaLvG------~~vaArLIs~AGgL~~LAK 290 (376)
T 2nnw_A 243 RLYQLRK------------KLEDYIDRAMDDVAPNLKALVG------AKLAARLISLAGGLRELAM 290 (376)
T ss_dssp HHHHHHH------------HHHHHHHHHHHHHCHHHHHHHC------HHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHH------------HHHHHHHHHHHHhCCCHHHHhC------hHHHHHHHHHhCCHHHHhh
Confidence 4444433 3445666777777777776633 3466665 55666666644
No 11
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=99.72 E-value=8.5e-18 Score=171.50 Aligned_cols=143 Identities=29% Similarity=0.398 Sum_probs=96.2
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhccCChhHHHHHHHHHhh
Q psy10021 478 KVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEI 557 (716)
Q Consensus 478 k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseILp~e~i~~I~~AAst 557 (716)
+.|++|||||+++|+||+|||.++|||||||+||||||++||+||++|++++.... +..++ ..+....
T Consensus 2 k~D~~Iiqai~lld~iDkein~~~~rvrewY~~~FPEL~~iv~d~~~Yak~V~~ig-~~~~~----~~~~l~~------- 69 (255)
T 3icx_A 2 KRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFG-DRGFL----TIDSLKE------- 69 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHCCCHHHHHHHHHHTC-SGGGC----CHHHHHT-------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcchHhhcCCHHHHHHHHHHHc-CCCCC----ChhhHHH-------
Confidence 57999999999999999999999999999999999999999999999999875321 22232 2221111
Q ss_pred hcCCCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCChhh
Q psy10021 558 SMGTEISDDDIENILLLC-------------DQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLN 624 (716)
Q Consensus 558 SmGteLSeeDL~~I~~lc-------------d~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGSL~n 624 (716)
..++++-...|...+ ..|..+++.-.+|.+|-. -+-..|-.|+-..|..|..
T Consensus 70 ---l~l~~~~~~~i~~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~------------~l~~yl~srM~~iAPNLsa 134 (255)
T 3icx_A 70 ---LGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRR------------NLNNYLEGVMKEVAPNVTA 134 (255)
T ss_dssp ---TTCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHSHHHHH
T ss_pred ---ccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhccCCcHHH
Confidence 124554444444433 234555555555555544 3345566666666766666
Q ss_pred hhcCCCchhhhhhhhH-HHhhhhhhccCCC
Q psy10021 625 LAKHPASTVQILGAEK-ALFRSLLNLAKHP 653 (716)
Q Consensus 625 LAKmPASnIasLGA~K-kl~~~L~t~~k~p 653 (716)
|.. .++||+- ..+++|.++++.|
T Consensus 135 LvG------~~vaArLIs~AGgL~~LAk~P 158 (255)
T 3icx_A 135 LVG------PALGARLLSIAGSLDELAKMP 158 (255)
T ss_dssp HHC------HHHHHHHHHHHSSHHHHTTSC
T ss_pred Hhc------cHHHHHHHHHcCCHHHHhhCC
Confidence 644 4577776 5577777776544
No 12
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=99.62 E-value=5.9e-16 Score=158.36 Aligned_cols=146 Identities=21% Similarity=0.189 Sum_probs=94.2
Q ss_pred CCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCcccccccccccccccCcCCCCCcchhhccCChhHHHHHHHH
Q psy10021 475 SPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEA 554 (716)
Q Consensus 475 s~~k~D~~IIQAIsLLDeIDKEINlLhmRLREWYS~HFPELeSIV~DpL~Y~kv~~r~nl~~~dLseILp~e~i~~I~~A 554 (716)
..+..+.+|+|+|+++|+||+|||.+||||||||+||||||++||+||++|++++..-. +..++.. -..++
T Consensus 12 e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig-~~~~~~~-~~~~L------- 82 (260)
T 2ozb_B 12 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELG-NSLDKCK-NNENL------- 82 (260)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHT-TCGGGCT-TCTTG-------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhC-Cchhhcc-chHHH-------
Confidence 34678999999999999999999999999999999999999999999999998653210 1122221 01111
Q ss_pred HhhhcCCCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHhhHHHHHHHHHhcCC
Q psy10021 555 AEISMGTEISDDDIENILLLC-------------DQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGS 621 (716)
Q Consensus 555 AstSmGteLSeeDL~~I~~lc-------------d~Ii~L~e~R~eL~eYLesRM~~IAPNLSALVG~~VAARLIShAGS 621 (716)
..-++++....|..+| +.|..+++.--+|.+|-. -+-..|-.|+...|-.
T Consensus 83 -----~~iL~~~~~~~i~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~------------~l~~yl~~rM~~iAPN 145 (260)
T 2ozb_B 83 -----QQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKH------------RIYEYVESRMSFIAPN 145 (260)
T ss_dssp -----GGTSCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHSHH
T ss_pred -----HHHcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhCCC
Confidence 1112333333333333 345555555555555544 3445667777777777
Q ss_pred hhhhhcCCCchhhhhhhhH-HHhhhhhhccCC
Q psy10021 622 LLNLAKHPASTVQILGAEK-ALFRSLLNLAKH 652 (716)
Q Consensus 622 L~nLAKmPASnIasLGA~K-kl~~~L~t~~k~ 652 (716)
|..|.. ..+||+- ..+++|.++++.
T Consensus 146 LtaLvG------~~vaArLI~~AGsL~~Lak~ 171 (260)
T 2ozb_B 146 LSIIIG------ASTAAKIMGVAGGLTNLSKM 171 (260)
T ss_dssp HHHHHH------HHHHHHHHHHHTSHHHHHTS
T ss_pred HHHHhC------cHHHHHHHHHhCCHHHHhhC
Confidence 777733 3466665 556666666543
No 13
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=99.06 E-value=3.4e-11 Score=116.54 Aligned_cols=59 Identities=29% Similarity=0.449 Sum_probs=54.2
Q ss_pred HHHHHHhhhhhcccccccchhhHHHHHHHHHhhhhhccCCCcccccchhhhHHHHHHHHHHhh
Q psy10021 203 IILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEE 265 (716)
Q Consensus 203 ~~~~~~~~~~~~~~~~~kg~~~~~l~~k~~~a~r~d~~~~~~~~~~g~~~~~~~e~~~~~~~~ 265 (716)
|+..| ..+|++++.+++|+|+||||+||+||+|||||++. .||+.+|++||++|..+++
T Consensus 90 G~Iy~-s~lV~~~p~~~rgK~aR~LAaK~aLAARiD~~~g~---~~G~~lreeie~riekl~e 148 (169)
T 3gqu_A 90 GVIYQ-YPAINRSPWWQRGKIARALAGKLAIAARVDYFSGE---YIAEELKKELEARIKEIKE 148 (169)
T ss_dssp CGGGG-SHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHTCC---CCCTTHHHHHHHHHHHCCC
T ss_pred CEEEe-CHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHHHHHHH
Confidence 67777 68899999999999999999999999999999863 6899999999999998876
No 14
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=98.98 E-value=1.2e-10 Score=119.16 Aligned_cols=58 Identities=28% Similarity=0.351 Sum_probs=52.3
Q ss_pred HHHHHHhhhhhcccccccchhhHHHHHHHHHhhhhhccCCCcccccchhhhHHHHHHHHHHhh
Q psy10021 203 IILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEE 265 (716)
Q Consensus 203 ~~~~~~~~~~~~~~~~~kg~~~~~l~~k~~~a~r~d~~~~~~~~~~g~~~~~~~e~~~~~~~~ 265 (716)
|+..| ..+|+++|.++||||+||||+||+||+|||||++ .||..+|+|||+||..+.+
T Consensus 200 G~Iy~-s~~V~~ap~~~rgK~aR~LAaK~aLAARiD~~~g----~~G~~lre~ie~rl~k~~e 257 (258)
T 1nt2_B 200 GIIFL-HPFIRTLPKAKRGKMARFLAAKLAIAAKIDYFRG----EIDESLYESIRRRYEELRR 257 (258)
T ss_dssp CGGGG-SHHHHTSCSSSSHHHHHHHHHHHHHHHHHHHHTC----SCCTHHHHHHHHHHHHCC-
T ss_pred ceEec-CHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhCC----cccHHHHHHHHHHHHHHhh
Confidence 66677 6889999999999999999999999999999974 6999999999999998765
No 15
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=66.37 E-value=15 Score=35.07 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=64.3
Q ss_pred cceeeecCCCcccCCCcchhHHhHhHHHHhhhhhhcccccCCCChHHHHHHHHHHHhhhhhcccccccchhhHHHHHHHH
Q psy10021 153 NASVTHATPSVETGHTKPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAA 232 (716)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~l~~k~~ 232 (716)
++.-....+....|-..|+. .|++.+-++| ..++..+..+++.+.+||..+ |.--..=|..|-
T Consensus 19 ~~~~l~~~~v~~Ig~~nPv~----------DFk~lL~~~~--~~~~~A~~qM~~vI~~Ll~~s-----~~~~y~KA~ecL 81 (152)
T 1rw2_A 19 SVSSLAEGSVTSVGSVNPAE----------NFRVLVKQKK--ASFEEASNQLINHIEQFLDTN-----ETPYFMKSIDCI 81 (152)
T ss_dssp CSCCSSSSSSCSSSSSCTTH----------HHHHHHHSSS--SCHHHHHHHHHHHHHHHHHSS-----CSHHHHHHHHHH
T ss_pred hHHHhccCCCceeCCCCcHH----------HHHHHHHcCc--hhHHHHHHHHHHHHHHHHhcc-----ccchHHHHHHHH
Confidence 34444456677788888864 6888887776 458999999999999999754 333344577888
Q ss_pred HhhhhhccCC-Ccc--cccchhhhHHHHH
Q psy10021 233 LATRVDALGE-DSS--IELGTDHRAKLEI 258 (716)
Q Consensus 233 ~a~r~d~~~~-~~~--~~~g~~~~~~~e~ 258 (716)
.|=|-+|-.+ +|. |.|=..||+.+..
T Consensus 82 ~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~ 110 (152)
T 1rw2_A 82 RAFREEAIKFSEEQRFNNFLKALQEKVEI 110 (152)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHh
Confidence 9999999874 443 5666677776644
No 16
>1uap_A Procollagen C-proteinase enhancer protein; beta barrel, protein binding; NMR {Homo sapiens} SCOP: b.40.3.3
Probab=42.60 E-value=4 Score=39.33 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=1.1
Q ss_pred CccccccccCCCcceeeecCCCc
Q psy10021 141 SSKHHHHATSKKNASVTHATPSV 163 (716)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~ 163 (716)
||.||||..+.+--.|-+..|.-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~p 25 (154)
T 1uap_A 3 SSHHHHHHSSGLVPRGSHMLESP 25 (154)
T ss_dssp ---------------------CC
T ss_pred ccccccccccCccccccccCCCC
Confidence 57788888888877887776655
No 17
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=27.69 E-value=21 Score=33.19 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=16.7
Q ss_pred hcccccccchhhHHHHHHHHHhh
Q psy10021 213 GQSSTKNKGKMARMLAAKAALAT 235 (716)
Q Consensus 213 ~~~~~~~kg~~~~~l~~k~~~a~ 235 (716)
.+.+.-.+|-+-+|..+|-.|-.
T Consensus 66 A~~AGvs~~tlY~~F~sKe~Ll~ 88 (214)
T 2guh_A 66 AEDAGVSAPLIIKYFGSKEQLFD 88 (214)
T ss_dssp HHHHTSCHHHHHHHHSSHHHHHH
T ss_pred HHHhCCCHHHHHHHcCCHHHHHH
Confidence 34445578888899999988754
No 18
>3ufe_A Transcriptional antiterminator (BGLG family); extended helix bundle, arcimboldo; 1.50A {Bacillus subtilis} PDB: 3gwh_A
Probab=26.36 E-value=2.8e+02 Score=23.08 Aligned_cols=85 Identities=7% Similarity=0.082 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhcCCccchhhcccChHHHHHHHHHhhhcccchhhccccCCCchhHHHHHHHHhHHHHHHHHHHHHH
Q psy10021 423 DKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMM 502 (716)
Q Consensus 423 DKeIN~~~mRiREWYswHFPEL~kIV~Dn~~YaKvVk~IGlrHSLSR~KLk~s~~k~D~~IIQAIsLLDeIDKEINlLhm 502 (716)
-+-++.+...+.+.|+..|.+ |...|.+.+..+.. .+.|.+-.......+.++-+........=.-...+..
T Consensus 13 ~~~i~~ii~~i~~~~~~~l~~------d~~~~~~L~~Hl~~--~i~Ri~~~~~i~n~~~l~~~ik~~y~~~y~~a~~i~~ 84 (111)
T 3ufe_A 13 SQLMAQLVEVIEDSFQMKVNK------ESVNYLRLIRHIRF--TIERIKKEEPTKEPEKLMLLLKNEYPLCYNTAWKLIK 84 (111)
T ss_dssp HHHHHHHHHHHHHHHTSCCCT------TSHHHHHHHHHHHH--HHHHHHHTCCCCTTHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcCC------ccHHHHHHHHHHHH--HHHHHHcCCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 345566677778888876542 33446666555544 3444332222222221211111111222233556777
Q ss_pred HHHHHhhccCCcc
Q psy10021 503 RCREWYGWHFPEL 515 (716)
Q Consensus 503 RLREWYS~HFPEL 515 (716)
.+.+.|++.|||=
T Consensus 85 ~ie~~~~i~i~~~ 97 (111)
T 3ufe_A 85 ILQQTLKKPVHEA 97 (111)
T ss_dssp HHHHHHCSCCCTH
T ss_pred HHHHHHCCCCCHH
Confidence 8888999999983
No 19
>3na2_A Uncharacterized protein; beta-fold, metagenome, structural genomics, PSI-2, protein S initiative, midwest center for structural genomics; 2.29A {Leptospirillum rubarum}
Probab=24.63 E-value=30 Score=32.57 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=18.8
Q ss_pred cCCCcchhHHhHhHHHHhhhhhhccc
Q psy10021 165 TGHTKPLRAKRKHQLKLKRFKQTLCR 190 (716)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (716)
.||..|--..|--|.-|.-|+.-.|-
T Consensus 20 qghv~~~vtdrig~milemfr~gmcl 45 (172)
T 3na2_A 20 QGHVEPGVTDRIGQMILEMFRTGMCL 45 (172)
T ss_dssp -----CHHHHHHHHHHHHHHHHSCEE
T ss_pred ecccCCcchhHHHHHHHHHHhcCceE
Confidence 48888988899999999999988884
No 20
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=24.30 E-value=30 Score=30.93 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=19.0
Q ss_pred HhhhhhccCCCcccccchhhhHHHHHHHHHHhhccccc
Q psy10021 233 LATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLRR 270 (716)
Q Consensus 233 ~a~r~d~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~~ 270 (716)
|+.+.. ..-+|....|..+---.++=..++|+|+|.+
T Consensus 86 L~~~~g-~~tVP~vfi~g~~igG~d~l~~l~~~G~L~~ 122 (129)
T 3ctg_A 86 LEEISG-QKTVPNVYINGKHIGGNSDLETLKKNGKLAE 122 (129)
T ss_dssp HHHHHS-CCSSCEEEETTEEEESHHHHHHHHHTTHHHH
T ss_pred HHHHhC-CCCCCEEEECCEEEcCHHHHHHHHHCCCHHH
Confidence 444443 2457877665544333344444566666543
No 21
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=22.95 E-value=44 Score=32.80 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.2
Q ss_pred cCCCCCceeEEEecccccCCCcccc
Q psy10021 672 TKRDTPKYGLIYHSQLIGQSSTKNK 696 (716)
Q Consensus 672 tk~~tPKyGlIY~s~LV~~aP~k~K 696 (716)
..++.++.||||||+|=+++-|..|
T Consensus 74 ~~~n~~r~ayiyQSDLG~galp~lr 98 (195)
T 3efy_A 74 KGENSCRPAFLYQSDLGEGVTRKLR 98 (195)
T ss_dssp SCCSTTCEEEEECCBCSSSSSCCBC
T ss_pred CCCCCCcceEEEecccCCcccccee
Confidence 3457899999999999999988765
No 22
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=22.75 E-value=94 Score=26.33 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=21.8
Q ss_pred HHhhhhhccCCCcccccchhhhHHHHHHHHHHhhcccc
Q psy10021 232 ALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLR 269 (716)
Q Consensus 232 ~~a~r~d~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~ 269 (716)
.++.+......+|+...|-.+---.++=..++++|++.
T Consensus 57 ~l~~~~~g~~~vP~ifi~g~~igG~d~l~~~~~~g~L~ 94 (99)
T 3qmx_A 57 AMAARANGKRSLPQIFIDDQHIGGCDDIYALDGAGKLD 94 (99)
T ss_dssp HHHHHTTTCCCSCEEEETTEEEESHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCCCCCEEEECCEEEeChHHHHHHHHcCCHH
Confidence 34444434567888877766544444445555666543
No 23
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=22.28 E-value=1.1e+02 Score=31.06 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=16.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q psy10021 482 MIVQAVSLLDDLDKELNNYMM 502 (716)
Q Consensus 482 ~IIQAIsLLDeIDKEINlLhm 502 (716)
.+.++.+.++-|+.|+..+-+
T Consensus 221 ~~~~s~~~Lesi~~EleiL~~ 241 (243)
T 3qc1_A 221 WIAVSLEELESIDQEIKILKE 241 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 577888888888888877643
No 24
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=21.60 E-value=27 Score=29.01 Aligned_cols=19 Identities=58% Similarity=0.714 Sum_probs=7.4
Q ss_pred CccccccccCCCcceeeec
Q psy10021 141 SSKHHHHATSKKNASVTHA 159 (716)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ 159 (716)
.|.||||..++.+..|+.-
T Consensus 3 gshhhhhhgsk~~~~Vs~Y 21 (66)
T 2k1o_A 3 GSHHHHHHGSKRNFSVTFY 21 (66)
T ss_dssp ----------CCCEEEEEE
T ss_pred CcccccccccccceEEEEE
Confidence 4678888889999988764
No 25
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=20.71 E-value=29 Score=32.22 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=12.8
Q ss_pred ccccccchhhHHHHHHHHHh
Q psy10021 215 SSTKNKGKMARMLAAKAALA 234 (716)
Q Consensus 215 ~~~~~kg~~~~~l~~k~~~a 234 (716)
.+.-.+|-+-+|..+|-.|-
T Consensus 72 ~AGvs~~t~Y~~F~sKe~Ll 91 (229)
T 3bni_A 72 RADVPIGSVYRFFGNKRQMA 91 (229)
T ss_dssp HHTCCHHHHHHHCSSHHHHH
T ss_pred HHCCCchhHHHHcCCHHHHH
Confidence 33445677777777776654
Done!