RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10021
(716 letters)
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex,
ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6
DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP:
a.183.1.1 PDB: 3siu_B 3siv_B
Length = 260
Score = 219 bits (558), Expect = 2e-66
Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 30/233 (12%)
Query: 473 KFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNL------KRN 526
+IV A +L +++ ELN R+ Y FPEL +V + L K
Sbjct: 10 PVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL 69
Query: 527 DNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRG 586
NS + +L +IL V A + G ++S++++E + CD LE+++ +
Sbjct: 70 GNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKH 129
Query: 587 QLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSL 646
++Y+Y++SRM +APNL+I++G A+++ A L
Sbjct: 130 RIYEYVESRMSFIAPNLSIIIGASTAAKIMGVA------------------------GGL 165
Query: 647 LNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKM 699
NL+K PA + +LGA++ + P G IYHS ++ + K
Sbjct: 166 TNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKA 218
Score = 66.3 bits (161), Expect = 3e-12
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 190 RRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELG 249
F S + + + ++ + K AR++AAK LA RVD+ E + ++G
Sbjct: 186 LSGFSSTSVLPHTGYIYHS-DIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVG 244
Query: 250 TDHRAKLEIKLRLLEE 265
+ + ++E K +E
Sbjct: 245 YELKDEIERKFDKWQE 260
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus}
PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Length = 376
Score = 212 bits (540), Expect = 2e-62
Identities = 88/340 (25%), Positives = 145/340 (42%), Gaps = 32/340 (9%)
Query: 365 EEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDK 424
+E + +K+ E D L + L D + + L +
Sbjct: 26 DENGNLIEKRYFTDKPEKVLDQLLKGEITKDLEELLNSLKEKGYDEFVFEHPELSRRAKE 85
Query: 425 ELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGLAHSLSRYKLKFSPDKVDTMIV 484
+ E+ L + + + + +L+R +++ D M++
Sbjct: 86 LGFSA---TTEFPNIAGERLRSNPEEFLGENWFEEYYKVGVALTRMRIQEQSGARDKMVI 142
Query: 485 QAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLK-----RNDNSTRDKTSASDL 539
QA+ LDD+DK +N + R REWY HFPEL +++ + + + +
Sbjct: 143 QAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLR 202
Query: 540 SEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAV 599
L E+ +K+ EA E +MG + DIE + L +++ + R +L DY+ M V
Sbjct: 203 ELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDV 262
Query: 600 APNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTVQI 659
APNL L+G + ARL++ AG L LA P +ST+Q+
Sbjct: 263 APNLKALVGAKLAARLISLAGGLRELAMMP------------------------SSTIQV 298
Query: 660 LGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKM 699
LGAEKALFR L+T PK+G+IY I +S +GK+
Sbjct: 299 LGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKI 338
Score = 61.7 bits (149), Expect = 3e-10
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 210 QLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLE 264
I +S +GK+AR LA K A+A RVD + + + + +LE ++R ++
Sbjct: 325 PAINRSPWWQRGKIARALAGKLAIAARVDYFSGEY---IAEELKKELEARIREIK 376
Score = 40.9 bits (95), Expect = 0.001
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 28 LYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVEGKLCKKLKKVLKSLVSSDVQEN 87
+ E+ + ++ L F D E + ++G++ K L+++L SL +
Sbjct: 15 ISENVRGIYAFDENGNLIEKRYFTDKPEKVL--DQLLKGEITKDLEELLNSL-KEKGYDE 71
Query: 88 LLVADTKRAA 97
+ + +
Sbjct: 72 FVFEHPELSR 81
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation,
coiled-coil, RNA binding PR; 3.10A {Sulfolobus
solfataricus}
Length = 255
Score = 206 bits (525), Expect = 9e-62
Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 29/227 (12%)
Query: 478 KVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLK-----RNDNSTRD 532
K D + +QAV +DD+DK +N + R REWY HFPEL K++ D+ +
Sbjct: 2 KRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGF 61
Query: 533 KTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYL 592
T S E ++ +AA+ S+G +IS+DD+ + ++ + +L++ + R L +YL
Sbjct: 62 LTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYL 121
Query: 593 KSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKH 652
+ M VAPN+T L+G +GARL++ A SL LAK
Sbjct: 122 EGVMKEVAPNVTALVGPALGARLLSIA------------------------GSLDELAKM 157
Query: 653 PASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKM 699
PAST+Q+LGAEKALFRAL++ PK+G+I+ I S +GK+
Sbjct: 158 PASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKI 204
Score = 58.9 bits (142), Expect = 1e-09
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 210 QLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLR 269
I S +GK+AR LAAK A+A RVDA +G +L+ ++ ++E +
Sbjct: 191 PAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRF---IGDQLNEQLKKRIDEIKEKFAQ 247
Query: 270 R 270
Sbjct: 248 H 248
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA;
HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Length = 388
Score = 207 bits (528), Expect = 1e-60
Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 34/345 (9%)
Query: 365 EEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDK 424
+E + +D+ T+ L + S ++V+ + + L
Sbjct: 17 DENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQA 76
Query: 425 ELNN----YMMRCREWYGWHFPELGKIVTDNVAFVKTIKTI-GLAHSLSRYKLKFSPDKV 479
+ + P++ + + L+ +R KL+ + K
Sbjct: 77 LGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKR 136
Query: 480 DTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKR----NDNSTRDKTS 535
D + +QAV +DD+DK +N + R REWY HFPEL K++ D+ + + R +
Sbjct: 137 DLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLT 196
Query: 536 ASDLSEI-LPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKS 594
L E+ E ++ +AA+ S+G +IS+DD+ + ++ + +L++ + R L +YL+
Sbjct: 197 IDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEG 256
Query: 595 RMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPA 654
M VAPN+T L+G +GARL++ AGSL LAK P A
Sbjct: 257 VMKEVAPNVTALVGPALGARLLSIAGSLDELAKMP------------------------A 292
Query: 655 STVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKM 699
ST+Q+LGAEKALFRAL++ PK+G+I+ I S +GK+
Sbjct: 293 STIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKI 337
Score = 60.2 bits (145), Expect = 1e-09
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 193 FCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDH 252
S + I+ + I S +GK+AR LAAK A+A RVDA +G
Sbjct: 308 LRSGGRPPKHGIIFQY-PAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRF---IGDQL 363
Query: 253 RAKLEIKLRLLEEGNLRR 270
+L+ ++ ++E +
Sbjct: 364 NEQLKKRIDEIKEKFAQH 381
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation,
coiled-coil, methyltransfer binding, rRNA processing;
HET: SAM; 2.60A {Sulfolobus solfataricus}
Length = 268
Score = 174 bits (442), Expect = 8e-50
Identities = 54/250 (21%), Positives = 107/250 (42%), Gaps = 10/250 (4%)
Query: 365 EEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDK 424
+E + +D+ T+ L + S ++V+ + + L
Sbjct: 17 DENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQA 76
Query: 425 E----LNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTI-GLAHSLSRYKLKFSPDKV 479
+ + P++ + + L+ +R KL+ + K
Sbjct: 77 LGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKR 136
Query: 480 DTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLK----RNDNSTRDKTS 535
D + +QAV +DD+DK +N + R REWY HFPEL K++ D+ + + R +
Sbjct: 137 DLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLT 196
Query: 536 ASDLSEI-LPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKS 594
L E+ E ++ +AA+ S+G +IS+DD+ + ++ + +L++ + R L +YL+
Sbjct: 197 IDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEG 256
Query: 595 RMMAVAPNLT 604
M VA +
Sbjct: 257 VMKEVAHHHH 266
Score = 30.8 bits (69), Expect = 1.2
Identities = 7/97 (7%), Positives = 22/97 (22%), Gaps = 29/97 (29%)
Query: 2 LVLFETPAGYAFFKLLDEKKLQEADNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATT 61
+ L E G + ++ + + +
Sbjct: 4 IYLIEHVIGAVAY------------------------DENGNIVDYITNPRDLGKITEEL 39
Query: 62 AAV-EGKLCKKLKKVLKSLVSSDVQENLLVADTKRAA 97
+G ++LK + + ++V +
Sbjct: 40 LNNEKGIPFSATVELLKKVNP----QEVVVENEAEVP 72
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding
protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP:
a.183.1.1
Length = 258
Score = 134 bits (339), Expect = 9e-36
Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 34/222 (15%)
Query: 493 LDKELNNYMMRCREWYGWHFPEL-GKIVTDNLK----RNDNSTRDKTSASDLSEILPE-D 546
L + ++ F + + +
Sbjct: 17 LSENFEESFLKAENPSPLPFNVSEVGAKALGKDYYRILRKTALAVSEKMVEKELRREDRY 76
Query: 547 VEEKVKEAAEISMGTEISDDDIENILL---------LCDQVLEISSYRGQLYDYLKSRMM 597
V VK EI + ++ +E+I ++ E+ R + ++ M
Sbjct: 77 VVALVKALEEIDESINMLNEKLEDIRAVKESEITEKFEKKIRELRELRRDVEREIEEVME 136
Query: 598 AVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLNLAKHPASTV 657
+APN+T L+G V A+L+ +AGS+ L + PAS +Q++GAEK+L+++ + K
Sbjct: 137 KIAPNMTELVGAKVAAKLLERAGSMERLVRLPASKIQVIGAEKSLYKAFARMKK------ 190
Query: 658 QILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKM 699
K PK+G+I+ I +GKM
Sbjct: 191 -------------GKKAKIPKHGIIFLHPFIRTLPKAKRGKM 219
Score = 54.8 bits (131), Expect = 2e-08
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 210 QLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLR 261
I +GKMAR LAAK A+A ++D + L R + E R
Sbjct: 206 PFIRTLPKAKRGKMARFLAAKLAIAAKIDYFRGEIDESLYESIRRRYEELRR 257
Score = 42.9 bits (100), Expect = 2e-04
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 378 KDVEDETDPLNHV-GLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREW 436
D + A ++S ++ + D +V V L+++D+ +N + +
Sbjct: 42 GAKALGKDYYRILRKTALAVSEKMVEKELRREDRYVVALVKALEEIDESINMLNEKLEDI 101
Query: 437 YGWHFPELGKIVTDNV 452
E+ + +
Sbjct: 102 RAVKESEITEKFEKKI 117
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 120 bits (303), Expect = 7e-32
Identities = 46/130 (35%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 570 NILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHP 629
I ++ G L DY+ M VAPNL L+G +GARL++ AG
Sbjct: 4 RIQEQSGARDKMVIGAGGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAG--------- 54
Query: 630 ASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIG 689
L LA P+ST+Q+LGAEKALFR L+T PK+G+IY I
Sbjct: 55 ---------------GLKELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAIN 99
Query: 690 QSSTKNKGKM 699
+S +GK+
Sbjct: 100 RSPWWQRGKI 109
Score = 61.5 bits (149), Expect = 3e-11
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 210 QLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLR 269
I +S +GK+AR LA K A+A RVD + + + + +LE +++ ++E R
Sbjct: 96 PAINRSPWWQRGKIARALAGKLAIAARVDYFSGEY---IAEELKKELEARIKEIKEKYPR 152
Query: 270 RLSGTTKAKAKLEKYHGKRLEKK 292
+ + G++ K+
Sbjct: 153 PPKRRKEERK------GRKPWKE 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 1e-11
Identities = 86/538 (15%), Positives = 167/538 (31%), Gaps = 137/538 (25%)
Query: 67 KLCKKLKKVLKSLVSSDVQENLLVADTKRAAY--PSLGTTVLLYPYSWSGSSSNAAAKHF 124
+ KL++ L L +N+L+ G T + + S
Sbjct: 135 QPYLKLRQALLEL---RPAKNVLI-------DGVLGSGKTWV----ALDVCLSYKVQCKM 180
Query: 125 HNS-FVINIKKPKKSSSSSKH----HHHATSKKNASVTHATPSVETGHTKPLRAKRKHQL 179
F +N+K + + + + H++ H+ ++A+ + L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELRRLL 238
Query: 180 KLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKA---ALATR 236
K K ++ L N + C L+ +T+ K + AA +L
Sbjct: 239 KSKPYENCLLVLLNVQNAKAW-NAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHH 294
Query: 237 VDALGEDSSIELGTDHRAK-LEIKLRLL-EE---GNLRRLSGTTKAKAKLEKYHGKRLEK 291
L D L K L+ + + L E N RRLS + +
Sbjct: 295 SMTLTPDEVKSL----LLKYLDCRPQDLPREVLTTNPRRLSII-----------AESIR- 338
Query: 292 KKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDE----------PAAADV 341
+ AT D K +++S+ EP + P +A +
Sbjct: 339 -----------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 342 S---LSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSR 398
LS D V + K +K ++ T + + S+
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNK--------LHKYSLVEKQPKEST-----ISI-PSIYL 433
Query: 399 YKLKFSPDKVDTM---IVQAVSLLDDLDKE------LNNYMMRCREWY---GWHFPELGK 446
+LK + + IV ++ D + L+ Y +Y G H +
Sbjct: 434 -ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------FYSHIGHHLKNIEH 486
Query: 447 IVTDNVAFVKTIKTIGLAHSLSRY-KLKFSPDKV---DTMIVQAVSLLDDLDKELNNYMM 502
+ + + + + +F K+ T + S+L+ L ++L Y
Sbjct: 487 --PERMTLFRMV-----------FLDFRFLEQKIRHDSTAWNASGSILNTL-QQLKFY-- 530
Query: 503 RCREWYGWHFPELGKIVTD---NLKR-NDNSTRDKTSASDLSEI-LPEDVEEKVKEAA 555
+ + + P+ ++V L + +N K +DL I L + E +EA
Sbjct: 531 --KPYICDNDPKYERLVNAILDFLPKIEENLICSKY--TDLLRIALMAEDEAIFEEAH 584
Score = 62.6 bits (151), Expect = 4e-10
Identities = 103/628 (16%), Positives = 190/628 (30%), Gaps = 193/628 (30%)
Query: 144 HHHHATSKKNASVTHATPSVETGHTKPLRAKRKHQLK--LKRFKQTLCRRDF-CSNTQIL 200
HHHH H ETG + ++Q K L F+ +F C + Q +
Sbjct: 2 HHHH----------HM--DFETG-------EHQYQYKDILSVFEDAF-VDNFDCKDVQDM 41
Query: 201 MKIILNR--CVQLIGQSSTKN-----------KGKMARMLAAKAALATRVDALGEDSSIE 247
K IL++ +I + K + + L L
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS----P 97
Query: 248 LGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKYHGKRLEK-KKFKTEFDAAEETPA 306
+ T+ R + +E+ + RL + KY+ RL+ K + A E
Sbjct: 98 IKTEQRQPSMMTRMYIEQRD--RLYNDNQ---VFAKYNVSRLQPYLKLRQ---ALLE--L 147
Query: 307 TPDT-------SSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKK--------- 350
P SGK + V A DV LS K + K
Sbjct: 148 RPAKNVLIDGVLGSGK----------TWV---------ALDVCLSYKVQCKMDFKIFWLN 188
Query: 351 -KTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVD 409
K + E V E ++ + D L + L R L S +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRR--LLKSKPYEN 245
Query: 410 TMIVQAVSLLDDL-DKELNNYM-MRCREWYGWHFPEL----GKIVTDNVAFVKTIKTIGL 463
++V L ++ + + N + C+ L K VTD ++ T
Sbjct: 246 CLLV-----LLNVQNAKAWNAFNLSCK--------ILLTTRFKQVTDFLSAATTTHI--- 289
Query: 464 AHSLSRYKLKFSPDKVDTMIVQAVSL-LDDLDKE---------------LNNYMMRCREW 507
SL + + +PD+V +++++ + DL +E + + + W
Sbjct: 290 --SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---W 344
Query: 508 YGWHFPELGKIVT------DNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGT 561
W K+ T + L+ + + LS + P I
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAE----YRKMFDRLS-VFPPSA--------HIPTIL 391
Query: 562 ------EISDDDIENIL------LLCDQVLEISSYRGQLYD-YLKSRMMAVAPNLTILMG 608
++ D+ ++ L ++ + S+ + YL+ ++ N L
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVK--LENEYALHR 447
Query: 609 ELVGARLVAQAGSLLNLAK-------------HPASTVQILGAEK-ALFRSL-LNL---- 649
+V + + +L H + E+ LFR + L+
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH---PERMTLFRMVFLDFRFLE 504
Query: 650 AK--HPASTVQILGAEKALFRALKTKRD 675
K H ++ G+ + LK +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKP 532
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 6e-09
Identities = 69/428 (16%), Positives = 128/428 (29%), Gaps = 161/428 (37%)
Query: 5 FETPAGYAFF--KLLDE--KKLQEA------DN-------LYESF---------QTPQGA 38
P F +L ++ K L E D+ L F + G
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 39 -NKVLK--LKHFE-KFIDTTE--ALAATTAAVEGKLCKKLKKVLKSLVSSDVQEN----- 87
++VL L FE +++ + ALAA K K+++K+ +++ +
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 88 -----LLVADTKRAA-------------------------YPSLGTTVL------LYPYS 111
L A + A Y L ++ L
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 112 WSGSSSNAAAKHFHNSFVIN--IKKPKKSSSSSKHH-----------------HHATSKK 152
++ A K F I ++ P S++ K + H+ + K
Sbjct: 200 ---RTTLDAEKVFTQGLNILEWLENP--SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 153 NASVTHAT--PSVE--TGHTKPL---RAKRKHQLKLKRFKQTLCRRDFCSNTQILMKI-- 203
T ++ TGH++ L A +T F + + + +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVA----------IAETDSWESFFVSVRKAITVLF 304
Query: 204 -ILNRCVQ----------LIGQSSTKNKGKMARMLA----AKAALATRVDA----LGEDS 244
I RC + ++ S N+G + ML+ + + V+ L
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 245 SIEL----GTDH-------RAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKY---HGKRLE 290
+E+ G + ++ L L LR+ KA + L++ +R
Sbjct: 365 QVEISLVNGAKNLVVSGPPQS-----LYGLNL-TLRKA----KAPSGLDQSRIPFSER-- 412
Query: 291 KKKFKTEF 298
K KF F
Sbjct: 413 KLKFSNRF 420
Score = 57.0 bits (137), Expect = 2e-08
Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 95/282 (33%)
Query: 415 AVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDN-----VAFV----KTIKTIGLAH 465
A + + D ++ YG+ + IV +N + F K I+
Sbjct: 1642 AQDVWNRADNHF-------KDTYGF---SILDIVINNPVNLTIHFGGEKGKRIR------ 1685
Query: 466 SLSRY-KLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLK 524
Y + F + + ++ + ++++ +Y + + L
Sbjct: 1686 --ENYSAMIF--ETIVDGKLKTEKIFKEINEHSTSYT-----FRS---EK------GLL- 1726
Query: 525 RNDNSTRDKTS----ASDLSEILP-EDVEEK--VKEAAEI---SMGTEISDDDIENILLL 574
T A L E ED++ K + A S+G E + L
Sbjct: 1727 -------SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG-EYA-------ALA 1771
Query: 575 C-------DQVLEISSYRGQLYDYLKSR---------MMAVAPNLTILMG-----ELVGA 613
+ ++E+ YRG R M+A+ P + V
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 614 RLVAQAGSLLNLAKHPASTVQIL--GAEKAL--FRSLLNLAK 651
R+ + G L+ + + Q + G +AL ++LN K
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Score = 43.5 bits (102), Expect = 2e-04
Identities = 39/177 (22%), Positives = 61/177 (34%), Gaps = 52/177 (29%)
Query: 559 MGTEI--SDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAP-NLTILMGELVGARL 615
MG ++ + +++ D + Y + ++ P NLTI G G R+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADN------HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 616 VAQAGSLL--NLAKHPASTVQILG-----AEKALFRS---LLNLAKH--PASTVQILGAE 663
+++ + T +I + FRS LL+ + PA + E
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA----LTLME 1740
Query: 664 KALFRALKTKRDTPKY----GLIYHSQLIGQSSTKNKGKMGSYGWQPGSA--SRARV 714
KA F LK+K P G HS L G Y +A S A V
Sbjct: 1741 KAAFEDLKSKGLIPADATFAG---HS-L------------GEY-----AALASLADV 1776
Score = 43.5 bits (102), Expect = 2e-04
Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 51/206 (24%)
Query: 486 AVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLKR--------NDNSTRDKTSAS 537
A + + D ++ YG+ + IV +N R+ SA
Sbjct: 1642 AQDVWNRADNHF-------KDTYGF---SILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 538 DLSEILPEDVE-EKV-KEAAEISMGTEISDDDIENILLLCD--Q----VLEISSYRGQLY 589
I+ ++ EK+ KE E S T + + +L Q ++E +++
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHS--TSYTFRSEKGLLSATQFTQPALTLMEKAAFE---- 1745
Query: 590 DYLKSRMMAVAPN------LTILMGELVGARLVAQAGSL-----LNLAKHPASTVQILGA 638
LKS+ + A L GE A L + A + + + + T+Q+
Sbjct: 1746 -DLKSKGLIPADATFAGHSL----GEY-AA-LASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 639 EKALFRSLLNL-AKHPASTVQILGAE 663
L RS + A +P E
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQE 1824
Score = 37.3 bits (86), Expect = 0.021
Identities = 72/482 (14%), Positives = 121/482 (25%), Gaps = 204/482 (42%)
Query: 321 KNLDTSIVKAEPEDEPAAADVSLSKK----KKKKKTQDEEEPVEEGGEEEEVSKKKKKKK 376
K L +DEP L K EP + G+ ++V
Sbjct: 39 KILPEPTEGFAADDEPTTP-AELVGKFLGY-----VSSLVEP-SKVGQFDQVLNLCLT-- 89
Query: 377 KKDVEDETDPL--NHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCR 434
E E L N + H+L A LL + D L +
Sbjct: 90 ----EFENCYLEGNDI---HAL------------------AAKLLQENDTTLVKTKELIK 124
Query: 435 EWY-----------GWHFPELGKIVTDNVAFVKTIKTI----GLAHS----L-SRYKLKF 474
+ L + V + A + I G L Y+
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNA---QLVAIFGGQGNTDDYFEELRDLYQT-- 179
Query: 475 SPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNLK---RNDNSTR 531
V +I + L +L + + + + N+ N ++T
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTT----LDAEKVFTQGL---------NILEWLENPSNTP 226
Query: 532 DKTSASDLSEILPEDVEEKVKEAAEISM---G-TEISDDDIENILLLCDQVLEISSYRGQ 587
DK L + IS G +++ + ++ ++L + G+
Sbjct: 227 DK---DYLL-------------SIPISCPLIGVIQLA-----HYVVTA-KLLGFT--PGE 262
Query: 588 LYDYLKSRMMAVAPNLTILMGELVGARLVAQAGS---LLNLAKH---------------- 628
L YLK T LV A +A+ S +
Sbjct: 263 LRSYLKG--------ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 629 -----PASTVQI---------------------------------LGAEKALFRSLLN-- 648
P S ++ L A K + SL+N
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 649 ----LAKHPASTVQILGAEKALFRALK------------TKRDTPKYGL----I---YHS 685
++ P S L R K ++R K+ + +HS
Sbjct: 375 KNLVVSGPPQS----LYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFLPVASPFHS 429
Query: 686 QL 687
L
Sbjct: 430 HL 431
Score = 36.6 bits (84), Expect = 0.037
Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 51/211 (24%)
Query: 529 STRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENIL--LLCDQVLEISSYRG 586
S + + ++L E + +DI + LL + + +
Sbjct: 70 SLVEPSKVGQFDQVL-----NLCLTEFENCY---LEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 587 QLYDYLKSRMMAVAPNLTILMGELV------GARLVA----QAGS-------LLNLAKHP 629
+ +Y+ +R+MA P L A+LVA Q G+ L +L +
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLYQTY 180
Query: 630 ASTVQILGAEKALFRSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQ--- 686
V L A +L L + ++ + L+ +TP +
Sbjct: 181 HVLVGDLIKFSA--ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 687 -LIG--QSSTKNKGKMGSY-------GWQPG 707
LIG Q + Y G+ PG
Sbjct: 239 PLIGVIQ--------LAHYVVTAKLLGFTPG 261
Score = 30.4 bits (68), Expect = 2.9
Identities = 23/172 (13%), Positives = 42/172 (24%), Gaps = 85/172 (49%)
Query: 3 VLFET----PA----GYAFFKLLDEKKLQEADNLY------E-----------SFQT--- 34
+L T PA A F+ L K L AD + E S ++
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 35 -----------------------------PQGANKVLKLKHFEKFID-----TTEAL--- 57
P + + ++ T +
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 58 -----------AATTAAVE--GKLCKKLK-------KVLKSLVSSDVQENLL 89
A A++ + +K ++ KSL +V+ +L
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 47.2 bits (112), Expect = 1e-05
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 299 DAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEP 358
D E +T + ++ K++KK K+ S + D+ + A V ++ ++ +++E
Sbjct: 22 DREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKER 81
Query: 359 VEEGGEEEEV------SKKKKKKKKKDVEDETDP 386
E+ + + KKKKKKKK+ + +TDP
Sbjct: 82 DEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDP 115
Score = 34.9 bits (80), Expect = 0.093
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 287 KRLEKKKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKK 346
KR +KKK K A E+ P +S + ++ + + + +DE D +
Sbjct: 38 KRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATG 97
Query: 347 KKKKKTQDEEEPVE 360
KKKKK + + P
Sbjct: 98 KKKKKKKKKRGPKV 111
Score = 30.7 bits (69), Expect = 2.0
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 315 KKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQ------------DEEEPVEEG 362
+ +L+ + + E+ A+ +KKK++KK + D+E
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Query: 363 GEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVDT 410
++ + + K++D +DE + G + K K KV T
Sbjct: 66 EVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 29.9 bits (67), Expect = 3.6
Identities = 12/80 (15%), Positives = 24/80 (30%)
Query: 306 ATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEE 365
A + ++ + AA KKKK K E +
Sbjct: 2 AGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESG 61
Query: 366 EEVSKKKKKKKKKDVEDETD 385
V + ++ ++ +ED+
Sbjct: 62 ASVDEVARQLERSALEDKER 81
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 43.3 bits (102), Expect = 3e-04
Identities = 51/266 (19%), Positives = 95/266 (35%), Gaps = 37/266 (13%)
Query: 164 ETGHTKPLRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKM 223
E HT+ K Q KL+ + + K L +
Sbjct: 884 EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEE--------------IL 929
Query: 224 ARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEK 283
M A R L + + K++ ++ LEE +L A+ KL+
Sbjct: 930 HEMEARIEEEEERSQQLQAE---------KKKMQQQMLDLEE----QLEEEEAARQKLQL 976
Query: 284 YHGKRLEKKKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPE-DEPAAADVS 342
EK + E+ + ++ K K+ K L+ + E +
Sbjct: 977 ------EKVTADGKIKKMEDDILIMEDQNN-KLTKERKLLEERVSDLTTNLAEEEEKAKN 1029
Query: 343 LSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLK 402
L+K K K ++ E +E ++EE S+++ +K K+ +E E+ L+ +LK
Sbjct: 1030 LTKLKNKHESMISE--LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
Query: 403 FSPDKVDTMIVQAVSLLDDLDKELNN 428
K + + A++ L+D + NN
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNN 1113
Score = 30.6 bits (69), Expect = 2.5
Identities = 28/167 (16%), Positives = 66/167 (39%), Gaps = 11/167 (6%)
Query: 220 KGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGN---LRRLSGTTK 276
+ ++ K ++ + +D I + D KL + +LLEE L+ +
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDD--ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 277 AKAKLEKYHGKRLEKKKFKTEFDAAEETPATPDTSSSGKK-KKKNKNLDTSIVKAEPEDE 335
L K K E + E +E + + +K + ++ +L I + + +
Sbjct: 1026 KAKNLTKLKNK-HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ-- 1082
Query: 336 PAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVED 382
A++ KK+++ Q +E+ ++ + KK ++ + + D
Sbjct: 1083 --IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Score = 30.2 bits (68), Expect = 3.1
Identities = 37/247 (14%), Positives = 82/247 (33%), Gaps = 17/247 (6%)
Query: 182 KRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAKAALATRVDALG 241
+ + L R+ F + ++ C+Q + M L + L
Sbjct: 800 AQCRGYLARKAF---AKRQQQLESIFCIQ------YNVRSFMNVXHWPWMXLFFXIXPLL 850
Query: 242 EDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKYHGKRLEKKKFKTEFDAA 301
+ + E + + + + R +LE+ H +L ++K +
Sbjct: 851 KVTRQEEEMQAKDEELQRTK-------ERQQKAEAELKELEQKH-TQLCEEKNLLQEKLQ 902
Query: 302 EETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEE 361
ET + + K I+ + S + +KKK Q + +EE
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962
Query: 362 GGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDD 421
EEEE +++K + +K + + + L KL ++ + + L +
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 422 LDKELNN 428
+++ N
Sbjct: 1023 EEEKAKN 1029
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 42.3 bits (98), Expect = 6e-04
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 280 KLEKYHGKRLEKKKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAA 339
+LE + + E + A E + S+ + K+N+ K E + A A
Sbjct: 13 QLENLYFQGEETAVPENS-GANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATA 71
Query: 340 DVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDP 386
+ S + T + E EE+ S+ + + + ++D
Sbjct: 72 SETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDK 118
Score = 35.3 bits (80), Expect = 0.088
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 9/105 (8%)
Query: 285 HGKRLEKKKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLS 344
H +LE F+ E A E SG+ + T+ + E E A + L
Sbjct: 10 HHHQLENLYFQGEETAVPENSGANTELVSGESEHS-----TNEADKQNEGEHAREN-KLE 63
Query: 345 KKKKKKKTQDEEEPVEE---GGEEEEVSKKKKKKKKKDVEDETDP 386
K + + P E E + K ++K P
Sbjct: 64 KAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETP 108
Score = 34.9 bits (79), Expect = 0.12
Identities = 18/113 (15%), Positives = 38/113 (33%)
Query: 290 EKKKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKK 349
+ + + + AE +T+S + + A+PE++ + + K
Sbjct: 54 GEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK 113
Query: 350 KKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDPLNHVGLAHSLSRYKLK 402
K+ E E E + + SK + K + E + D + K
Sbjct: 114 PKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFN 166
Score = 33.8 bits (76), Expect = 0.27
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 8/125 (6%)
Query: 264 EEGNLRRLSGTTKAKAKLEKYHGKRLEKKKFKTEFDAAEETPATPDTSSSGKKKKKNKNL 323
L L + A E + +E + D + G+ ++NK
Sbjct: 10 HHHQLENLYFQGEETAVPEN------SGANTELVSGESEHSTNEADKQNEGEHARENKLE 63
Query: 324 DTSIVKAEPEDE-PAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKK-KKKKKKDVE 381
V E PA+ + + ++ + EE E E ++ K K K+ + +
Sbjct: 64 KAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAK 123
Query: 382 DETDP 386
E
Sbjct: 124 PEATN 128
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 41.6 bits (97), Expect = 8e-04
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 242 EDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKYHGKRLEKKKFKTEFDAA 301
+ S D + + +L +L K + G EK K DAA
Sbjct: 512 RNGSRLQADDFLQDYTLLINILHSEDLG--------KDVEFEVVGDAPEKVGPKQAEDAA 563
Query: 302 EETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEE 361
+ D + + D IV ++ ED ADVS ++ +K+K ++E
Sbjct: 564 KSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENL--- 620
Query: 362 GGEEEEVSKKKKKKKKKDVEDE 383
S K+ + ++K+ D+
Sbjct: 621 -------SAKRSRIEQKEELDD 635
Score = 28.9 bits (64), Expect = 7.4
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Query: 293 KFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKT 352
+ E D K+ K+ A S S +++
Sbjct: 533 LHSEDLGKDVEFEVVGDAPEKVGPKQAEDA-----AKSITNGSDDGAQPSTSTAQEQDDV 587
Query: 353 QDEEEPVEEGGEEEEVSKKKKKKKKKDVEDETDP 386
+ E+ +VS++++ +K+K E E
Sbjct: 588 LIVDSDEEDSSNNADVSEEERSRKRKLDEKENLS 621
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.014
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 316 KKKKNKNLDTSIVKAEPEDEPAAA 339
+K+ K L S+ + PA A
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA 41
Score = 33.4 bits (75), Expect = 0.097
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 21/46 (45%)
Query: 20 KKLQEADNLYESFQTPQGANKVLKLKHFEKFIDTTEALAATTAAVE 65
KKLQ + LY D+ AL A A +E
Sbjct: 23 KKLQASLKLYA----D----------------DSAPAL-AIKATME 47
Score = 31.8 bits (71), Expect = 0.40
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 456 KTIKTIGLAHSLSRYKLKFSPDKVDTMIVQA 486
+ +K L SL KL ++ D + ++A
Sbjct: 20 QALKK--LQASL---KL-YADDSAPALAIKA 44
Score = 31.5 bits (70), Expect = 0.51
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 17/44 (38%)
Query: 372 KKKKKKKDVEDETDPLNHVGLAHSLSRYKLKFSPDKVDTMIVQA 415
+K+ KK L SL KL ++ D + ++A
Sbjct: 18 EKQALKK-------------LQASL---KL-YADDSAPALAIKA 44
Score = 29.9 bits (66), Expect = 1.6
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 7/27 (25%)
Query: 282 EKYHGKRLEK--KKFKTEFDAAEETPA 306
EK K+L+ K + A + PA
Sbjct: 18 EKQALKKLQASLKLY-----ADDSAPA 39
Score = 28.8 bits (63), Expect = 4.1
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 242 EDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLE 282
E +++ KL+ L+L + + L+ KA +E
Sbjct: 18 EKQALK-------KLQASLKLYADDSAPALA----IKATME 47
Score = 27.6 bits (60), Expect = 9.2
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 16/43 (37%)
Query: 65 EGKLCKKLKKVLKSLVSSDVQENLLVADTKRAAYPSLG--TTV 105
E + KKL+ LK L + D +A P+L T+
Sbjct: 18 EKQALKKLQASLK-LYADD------------SA-PALAIKATM 46
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 35.1 bits (81), Expect = 0.047
Identities = 10/56 (17%), Positives = 19/56 (33%)
Query: 328 VKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDE 383
+ AE + A + +++ E V EG E K + + + E
Sbjct: 176 LTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSE 231
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 35.9 bits (83), Expect = 0.060
Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 28/156 (17%)
Query: 242 EDSSIELGTDHRAKLEIKLRLLE---EGNLRRLSGTTKAKAKLEKYHGKRLEKKKFKTEF 298
E S+E LE K+ L+ + + + LE E +K +++
Sbjct: 912 EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT--YSTETEKLRSDV 969
Query: 299 DAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDE--- 355
+ + + + +L ++E A L + + +KKT +E
Sbjct: 970 ERLRMSEEE-----AKNATNRVLSL---------QEEIAKLRKELHQTQTEKKTIEEWAD 1015
Query: 356 ------EEPVEEGGEEEEVSKKKKKKKKKDVEDETD 385
E+ V E E+ + K +K++ + + D+
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.13
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 23/80 (28%)
Query: 287 KRLEKKKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKK 346
KRL++ DAA + +++ + KA+ + E S +
Sbjct: 96 KRLQEL------DAASK-----------VMEQEWRE------KAKKDLEEWNQRQSEQVE 132
Query: 347 KKKKKTQDEEEPVEEGGEEE 366
K K + ++ + + +
Sbjct: 133 KNKINNRIADKAFYQQPDAD 152
Score = 33.2 bits (75), Expect = 0.16
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 16/57 (28%)
Query: 328 VKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKK--KKKKKKDVED 382
+ EPE +K ++ Q + ++E + ++ ++K KKD+E+
Sbjct: 80 LTQEPE-----------SIRKWREEQRKR--LQELDAASK-VMEQEWREKAKKDLEE 122
Score = 32.8 bits (74), Expect = 0.20
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 23/84 (27%)
Query: 253 RAKLEIKLRLLEEGNLRRLSGT-TKAKAKLEKYHGKRLEKKKFKTEFDAAEETPATPDTS 311
R + +L+ L+ + KAK LE+++ ++ E+ +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE------------------ 132
Query: 312 SSGKKKKKNKNLDTSIVKAEPEDE 335
K K N+ D + + +P+ +
Sbjct: 133 ---KNKINNRIADKAFYQ-QPDAD 152
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 33.8 bits (77), Expect = 0.23
Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 11/133 (8%)
Query: 275 TKAKAKLEKY--HGKRLEKKKFKTEFDAAEETPA---------TPDTSSSGKKKKKNKNL 323
T+A + ++ K ++ + + P+ D +
Sbjct: 745 TQAASAAIQFTIDQKIADQATENVADISNLKRPSYMPSSASYAASDFVPAAVTANATIPS 804
Query: 324 DTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVSKKKKKKKKKDVEDE 383
S +A E PA K + E + +++K D E E
Sbjct: 805 LDSSSEASREASPAPTGSHSLTKGMAELNVQESKVEVPEVPAPTKNEEKAAPIVDDEETE 864
Query: 384 TDPLNHVGLAHSL 396
D N +A ++
Sbjct: 865 FDIYNSKVIACAI 877
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 32.3 bits (74), Expect = 0.72
Identities = 19/208 (9%), Positives = 54/208 (25%), Gaps = 22/208 (10%)
Query: 171 LRAKRKHQLKLKRFKQTLCRRDFCSNTQILMKIILNRCVQLIGQSSTKNKGKMARMLAAK 230
++ + + K L +R+ L ++ + ++ ++ + L +
Sbjct: 822 EVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQ 881
Query: 231 AALATRVDALGEDSSIELGTDHRAKLEIKLRLLEEGNLRRLSGTTKAKAKLEKYHGKRLE 290
+A + +L + L ++ LE + +
Sbjct: 882 KKIAVLLQKY-NRILKKL---ENWATTKSVYLGSNETGDSITAVQAKLKNLEAFD-GECQ 936
Query: 291 KKKFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKK 350
+ ++ D + N + E +D +++
Sbjct: 937 SLEGQSNSDLLSI-----------LAQLTELNYNGVPELTERKDT------FFAQQWTGV 979
Query: 351 KTQDEEEPVEEGGEEEEVSKKKKKKKKK 378
K+ E E E + K +
Sbjct: 980 KSSAETYKNTLLAELERLQKIEDLHHHH 1007
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 31.6 bits (71), Expect = 0.87
Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 4/135 (2%)
Query: 273 GTTKAKAKLEKYHGKRLEKKKFK---TEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVK 329
G+ A + + G +E +++ ++ + + ++ V
Sbjct: 18 GSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAPITTDATSATVT 77
Query: 330 AEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEGGEEEEVS-KKKKKKKKKDVEDETDPLN 388
A + A S +++ + E E ++ KK +K+ D +
Sbjct: 78 AAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEKEIWSDVVPFVR 137
Query: 389 HVGLAHSLSRYKLKF 403
+ KF
Sbjct: 138 RTTDSDFDPSRMYKF 152
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 31.1 bits (71), Expect = 0.94
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 577 QVLEISSYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQIL 636
++ EIS +L ++ + AP + +G + RL+ LA
Sbjct: 109 ELAEIS--YERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKASRLAFLD------- 159
Query: 637 GAEKALFRSLLNLAKHP 653
+ R+L +L+K P
Sbjct: 160 -VTDRIVRTLHDLSKEP 175
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 30.1 bits (67), Expect = 2.4
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 303 ETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKKKTQDEEEPVEEG 362
D ++ + KK+++N + + +V + KK K +D E
Sbjct: 297 NAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKI-EDTSNVGTEQ 355
Query: 363 GEEEEVSKKKKKKKKKD 379
E++ + +
Sbjct: 356 LVAEKIPENETTHHHHH 372
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel,
licmsn, substrate specificity, acyltransferase,
amino-acid biosynthesis; 2.00A {Leptospira interrogans}
PDB: 3blf_A 3bli_A*
Length = 337
Score = 29.8 bits (68), Expect = 3.1
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 389 HVGLAHSLS--RYKLKFSPDKVDTMIVQAVSL 418
++ SL +L +P + T + +
Sbjct: 114 NLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEY 145
>3na2_A Uncharacterized protein; beta-fold, metagenome, structural
genomics, PSI-2, protein S initiative, midwest center
for structural genomics; 2.29A {Leptospirillum rubarum}
Length = 172
Score = 29.3 bits (65), Expect = 3.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 140 SSSKHHHHATSKKNASVTHATPSVETGHTKPLRAKRKHQLKLKRFKQTLC 189
SS HHHH++ ++N GH +P R Q+ L+ F+ +C
Sbjct: 3 SSHHHHHHSSGRENLYF--------QGHVEPGVTDRIGQMILEMFRTGMC 44
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 29.7 bits (66), Expect = 3.3
Identities = 28/180 (15%), Positives = 65/180 (36%), Gaps = 11/180 (6%)
Query: 276 KAKAKLEKYHGKRLEK--KKF--KTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAE 331
K + ++E + K+L KK+ K EE T + + N V +E
Sbjct: 38 KERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISE 97
Query: 332 P---EDEPAAADVSLSKKKKKKKTQDE----EEPVEEGGEEEEVSKKKKKKKKKDVEDET 384
+ A K+++K + ++ +E ++ E SK++ ++ K+ +
Sbjct: 98 NMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQ 157
Query: 385 DPLNHVGLAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPEL 444
+ ++++ ++ + + A D L + E+Y H P +
Sbjct: 158 QYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNI 217
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88,
structural genomics, PSI-2, protein structure
initiative; 2.70A {Agrobacterium tumefaciens str} SCOP:
b.136.1.2
Length = 176
Score = 29.2 bits (65), Expect = 3.6
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 293 KFKTEFDAAEETPATPDTSSSGKKKKKNKNLDTSIVKAEPEDEPAAADVSLSKKKKKK 350
F+ EFD + + ++ S E++ + VSL +KK+
Sbjct: 111 NFELEFDVPLAKEEEMEEAEITAYPVSHEAKPASETPKSGEEKKEGSVVSLDAFRKKQ 168
>3m5g_A Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST
cell membrane, HOST membrane, membrane, transmembrane,
viral protein; HET: NAG; 2.60A {Influenza a virus} PDB:
3m5h_A* 3m5i_A* 3m5j_A* 1ti8_A*
Length = 317
Score = 29.3 bits (65), Expect = 4.9
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 146 HHATS---------KKNASVTHATPSVETGHTKPLRAKRKHQLKLK 182
HHA + ++ V +AT +VET + K + + K L
Sbjct: 11 HHAVANGTKVNTLTERGIEVVNATETVETTNIKKICTQGKRPTDLG 56
>1cza_N Hexokinase type I; structurally homologous domains, transferase;
HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3
c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A*
1hkc_A* 1bg3_A* 2nzt_A*
Length = 917
Score = 29.3 bits (65), Expect = 5.9
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 530 TRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLE 580
TR LS+I + + A +G + DD + +C V
Sbjct: 778 TRGIFETKFLSQIESDRLALLQVRAILQQLGLNSTCDDSILVKTVCGVVSR 828
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid BIOS lysine biosynthesis, transferase; HET:
AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A*
3a9i_A*
Length = 382
Score = 28.7 bits (65), Expect = 6.6
Identities = 4/39 (10%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 380 VEDETDPLNHVGLAHS-LSRYKLKFSPDKVDTMIVQAVS 417
VE + + S R ++ + ++
Sbjct: 84 VETGVQGI-DLLFGTSKYLRAPHGRDIPRIIEEAKEVIA 121
>1sqh_A Hypothetical protein CG14615-PA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Drosophila melanogaster} SCOP:
d.108.1.5
Length = 312
Score = 28.6 bits (63), Expect = 6.7
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 548 EEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQLYDYLKSRMMAVAPNLTILM 607
+ + ++ EI E+ V + +G+ ++ +L I
Sbjct: 161 DAFCAKVPDLPSEFEIRRLRAEDA----AMVHDSWPNKGEGSLTYLQALVRFNKSLGICR 216
Query: 608 ---GELVGARLVAQAGSLLNLAKHPA 630
GEL+ L L P
Sbjct: 217 SDTGELIAWIFQNDFSGLGMLQVLPK 242
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural
genomics, protein structure initiative; 2.78A {Cytophaga
hutchinsonii atcc 33406}
Length = 325
Score = 28.6 bits (65), Expect = 7.3
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 389 HVGLAHSLS--RYKLKFSPDKVDTMIVQAV----SLLDD 421
H G+ S +KL+ + + + M V AV ++ +
Sbjct: 99 HTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHE 137
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown
function, amino-acid biosynthesis; 2.10A {Listeria
monocytogenes str}
Length = 293
Score = 28.2 bits (64), Expect = 7.9
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 389 HVGLAHSLS--RYKLKFSPDKVDTMIVQAV----SLLDD 421
H+ LA S YKLK S +V I + D
Sbjct: 98 HIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDV 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.357
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,477,137
Number of extensions: 647619
Number of successful extensions: 2197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2069
Number of HSP's successfully gapped: 133
Length of query: 716
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 616
Effective length of database: 3,909,693
Effective search space: 2408370888
Effective search space used: 2408370888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.0 bits)