RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10021
(716 letters)
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein
Prp31 {Human (Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 245 bits (628), Expect = 4e-77
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 32/231 (13%)
Query: 475 SPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNL------KRNDN 528
+P+ +IV A +L +++ ELN R+ Y FPEL +V + L K N
Sbjct: 3 APE--YRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGN 60
Query: 529 STRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISSYRGQL 588
S + +L +IL V A + G ++S++++E + CD LE+++ + ++
Sbjct: 61 SLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRI 120
Query: 589 YDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALFRSLLN 648
Y+Y++SRM +APNL+I++G A+++ AG L NL+K PA +
Sbjct: 121 YEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIM-------------- 166
Query: 649 LAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKM 699
+LGA++ + P G IYHS ++ + K
Sbjct: 167 ----------LLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKA 207
Score = 68.3 bits (167), Expect = 2e-13
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 211 LIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLRLLEE 265
++ + K AR++AAK LA RVD+ E + ++G + + ++E K +E
Sbjct: 195 IVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE 249
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 256
Score = 187 bits (476), Expect = 5e-55
Identities = 51/296 (17%), Positives = 95/296 (32%), Gaps = 108/296 (36%)
Query: 404 SPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNVAFVKTIKTIGL 463
SP + V A +L D + L +
Sbjct: 32 SPLPFNVSEVGAKALGKDYYRILRKTALA------------------------------- 60
Query: 464 AHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDNL 523
+S ++ + D +V V L+++D+ +N + + E+ +
Sbjct: 61 ---VSEKMVEKELRREDRYVVALVKALEEIDESINMLNEKLEDIRAVKESEITE------ 111
Query: 524 KRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCDQVLEISS 583
+ + +L E
Sbjct: 112 -------KFEKKIRELRE------------------------------------------ 122
Query: 584 YRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLNLAKHPASTVQILGAEKALF 643
R + ++ M +APN+T L+G V A+L+ +AGS+ L + PAS +Q++GAEK+L+
Sbjct: 123 LRRDVEREIEEVMEKIAPNMTELVGAKVAAKLLERAGSMERLVRLPASKIQVIGAEKSLY 182
Query: 644 RSLLNLAKHPASTVQILGAEKALFRALKTKRDTPKYGLIYHSQLIGQSSTKNKGKM 699
++ + K K PK+G+I+ I +GKM
Sbjct: 183 KAFARMKK-------------------GKKAKIPKHGIIFLHPFIRTLPKAKRGKM 219
Score = 84.1 bits (208), Expect = 1e-18
Identities = 9/61 (14%), Positives = 25/61 (40%)
Query: 392 LAHSLSRYKLKFSPDKVDTMIVQAVSLLDDLDKELNNYMMRCREWYGWHFPELGKIVTDN 451
A ++S ++ + D +V V L+++D+ +N + + E+ +
Sbjct: 57 TALAVSEKMVEKELRREDRYVVALVKALEEIDESINMLNEKLEDIRAVKESEITEKFEKK 116
Query: 452 V 452
+
Sbjct: 117 I 117
Score = 61.0 bits (148), Expect = 6e-11
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 210 QLIGQSSTKNKGKMARMLAAKAALATRVDALGEDSSIELGTDHRAKLEIKLR 261
I +GKMAR LAAK A+A ++D + L R + E +LR
Sbjct: 206 PFIRTLPKAKRGKMARFLAAKLAIAAKIDYFRGEIDESLYESIRRRYE-ELR 256
>d1sqha_ d.108.1.5 (A:) Hypothetical protein cg14615-pa {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 297
Score = 32.6 bits (74), Expect = 0.13
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 5/80 (6%)
Query: 576 DQVLEISSYRGQLYDYLKSRMMAVAPNLTILM---GELVGARLVAQAGSLLNLAKHPAST 632
V + +G+ ++ +L I GEL+ L L P
Sbjct: 179 AMVHDSWPNKGEGSLTYLQALVRFNKSLGICRSDTGELIAWIFQNDFSGLGMLQVLPK-- 236
Query: 633 VQILGAEKALFRSLLNLAKH 652
+ G L ++
Sbjct: 237 AERRGLGGLLAAAMSREIAR 256
>d1ti8a1 b.19.1.2 (A:13-325) Hemagglutinin {Influenza A virus,
different strains [TaxId: 11320]}
Length = 314
Score = 30.5 bits (69), Expect = 0.77
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 146 HHATS---------KKNASVTHATPSVETGHTKPLRAKRKHQLKLK 182
HHA S ++ V +AT +VE + + +K K + L
Sbjct: 5 HHAVSNGTKVNTLTERGVEVVNATETVERTNVPRICSKGKRTVDLG 50
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 152
Score = 28.8 bits (64), Expect = 1.4
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 500 YMMRCREWYGWHFPELGKIVTDNLKRNDNSTRDKTSASD--LSEILPEDVEEKVKEAAEI 557
+MMR R G + + T D + + I E+V E + ++
Sbjct: 85 FMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDV 144
Query: 558 SMGT 561
+ T
Sbjct: 145 GLQT 148
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 148
Score = 28.5 bits (64), Expect = 1.7
Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 535 SASDLSEI-LPEDVEEKVKEAAEIS-----------MGTEISDDDIENILLLCDQVLEIS 582
A L+++ L + + + + EA + + +G + D D E IL+L DQ+ +
Sbjct: 15 KADVLAKLPLTDALRKALAEAPKHTANIARKRHILFIGKLMRDQDQEAILVLLDQLDAST 74
Query: 583 SYRGQLYDYLKSRMMAVAPNLTILMGELVGARLVAQAGSLLN--LAKHPASTVQILGAEK 640
+ + L E RL+A + L + ++P + Q L
Sbjct: 75 RQYNERFHNL----------------ERWRDRLIAGDDADLEKFVIEYPDADRQQL---- 114
Query: 641 ALFRSLLNLAKHPASTVQILGAEKALFRALK 671
RSL+ A+H + + + +F+ ++
Sbjct: 115 ---RSLIRQAQHEVARNKPPATSRKIFKYIR 142
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 317
Score = 29.3 bits (66), Expect = 1.7
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 146 HHATS---------KKNASVTHATPSVETGHTKPL-RAKRKHQLKLK 182
+ +T+ + N VTHA + T H L H L L
Sbjct: 7 YQSTNSTETVDTLTETNVPVTHAKELLHTSHNGMLCATNLGHPLILD 53
>d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli
[TaxId: 562]}
Length = 77
Score = 26.3 bits (58), Expect = 3.4
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 12/79 (15%)
Query: 517 KIVTDNLKRNDNSTRDKTSASDLSEILPEDVEEKVKEAAEISMGTEISDDDIENILLLCD 576
KI+ + L + S + D E + A E TEI D++ E I +
Sbjct: 9 KIIGEQLGVKQEEVTNNASFVEDLGADSLDTVE-LVMALEEEFDTEIPDEEAEKITTV-- 65
Query: 577 QVLEISSYRGQLYDYLKSR 595
DY+
Sbjct: 66 ---------QAAIDYINGH 75
>d2viua_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 320
Score = 28.2 bits (63), Expect = 3.4
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 9/46 (19%)
Query: 146 HHATS---------KKNASVTHATPSVETGHTKPLRAKRKHQLKLK 182
HHA VT+AT V++ T + L
Sbjct: 9 HHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGI 54
>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 323
Score = 28.2 bits (63), Expect = 3.5
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 146 HHATS---------KKNASVTHATPSVETGHTK---PLRAKRKHQLK 180
+HA + +KN +VTH+ +E H L+ QL
Sbjct: 7 YHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLG 53
>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 288
Score = 27.9 bits (61), Expect = 4.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 279 AKLEKYHGKRL--EKKKFKTEFDAAEETPATPDTSSSGKKKKKNKN 322
KLE+ +R+ + K F+ EF+A P ++ K++ K KN
Sbjct: 8 DKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKN 53
>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 321
Score = 27.8 bits (62), Expect = 4.7
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 146 HHATS---------KKNASVTHATPSVETGHTK---PLRAKRKHQLK 180
+HA + +KN +VTHA +E H L + L+
Sbjct: 7 YHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLNGVKPLILR 53
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
reductase subunit alpha, DsrA {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 185
Score = 27.0 bits (59), Expect = 5.9
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 355 EEEPVEEGGEEEEVSKK 371
E++ ++ EE+ K+
Sbjct: 166 EKDELKPSAYTEELKKR 182
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.357
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,494,630
Number of extensions: 116494
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 31
Length of query: 716
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 624
Effective length of database: 1,144,436
Effective search space: 714128064
Effective search space used: 714128064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.8 bits)