RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10024
(69 letters)
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein
kinase), receptor serine/threonine kinase; 2.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A*
3kcf_A*
Length = 342
Score = 73.3 bits (180), Expect = 1e-17
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 1 MRKVVCLDQIRPAIPNRWHACKDLHLVLKIMQECWYPVATARPTALRIKKTIASIILSD 59
MRKVVC ++RP IPNRW +C+ L ++ KIM+ECWY AR TALRIKKT++ + +
Sbjct: 280 MRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 338
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens}
PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A* 1py5_A*
1rw8_A*
Length = 303
Score = 72.8 bits (179), Expect = 1e-17
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 1 MRKVVCLDQIRPAIPNRWHACKDLHLVLKIMQECWYPVATARPTALRIKKTIASIILSD 59
MRKVVC ++RP IPNRW +C+ L ++ KIM+ECWY AR TALRIKKT++ + +
Sbjct: 241 MRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC,
transferase, protein KI; HET: GVD; 1.95A {Homo sapiens}
PDB: 3q4t_A* 2qlu_A*
Length = 322
Score = 72.4 bits (178), Expect = 2e-17
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 1 MRKVVCLDQIRPAIPNRWHACKDLHLVLKIMQECWYPVATARPTALRIKKTIASI 55
M++VV + RP + + W + ++ + ++ECW A AR +A + + I +
Sbjct: 262 MQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQM 316
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC,
protein kinase, transfe; HET: LDN FLC; 1.82A {Homo
sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Length = 301
Score = 71.2 bits (175), Expect = 6e-17
Identities = 33/55 (60%), Positives = 40/55 (72%)
Query: 1 MRKVVCLDQIRPAIPNRWHACKDLHLVLKIMQECWYPVATARPTALRIKKTIASI 55
MRKVVC+DQ RP IPNRW + L + K+M+ECWY +AR TALRIKKT+ I
Sbjct: 246 MRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural
genomics, structural genomics consortium, ATP-binding,
disease mutation; HET: ADP; 2.35A {Homo sapiens}
Length = 336
Score = 67.9 bits (166), Expect = 9e-16
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1 MRKVVCLDQIRPAIPNRWHA-CKDLHLVLKIMQECWYPVATARPTALRIKKTIASIILSD 59
M+ +V ++ RP P W + + + +++CW A AR TA ++ +A +++
Sbjct: 261 MQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIW 320
Query: 60 Q 60
+
Sbjct: 321 E 321
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 67.5 bits (165), Expect = 2e-15
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 1 MRKVVCLDQIRPAIPNRWHACKDLHLVLKIMQECWYPVATARPTALRIKKTIASIILSDQ 60
MR++VC+ ++RP+ PNRW + + L + K+M ECW +R TALR+KKT+A + S
Sbjct: 275 MREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQD 334
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal
transduction, GRB2, SHC, ATP-binding, glycoprotein,
membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Length = 373
Score = 32.8 bits (75), Expect = 0.004
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVSYPDV 67
++M +CW+P A RP+ + I++I + Y V
Sbjct: 327 EVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHV 365
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; HET: PTR ACP; 1.80A
{Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A*
2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A*
3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A*
3js2_A* 3ky2_A ...
Length = 334
Score = 32.6 bits (75), Expect = 0.004
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVSYPDV 67
+M++CW+ V + RPT ++ + + I+ Y D+
Sbjct: 290 MMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTNEEYLDL 328
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS
autophosphorylation conformation, recept tyrosine
kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo
sapiens}
Length = 298
Score = 32.2 bits (74), Expect = 0.005
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVSYPDV 67
++MQ+CW RPT + + I+ + Y +
Sbjct: 259 QVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGDHYVQL 297
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A*
2ivv_A*
Length = 314
Score = 31.8 bits (73), Expect = 0.007
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQ 60
++M +CW RP I K + +++ +
Sbjct: 283 RLMLQCWKQEPDKRPVFADISKDLEKMMVKRR 314
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition,
juxtamembrane domain, transferase; 2.10A {Homo sapiens}
SCOP: d.144.1.7
Length = 344
Score = 31.9 bits (73), Expect = 0.007
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVSYPDV 67
IMQ CW + RP+ + + + + Y +V
Sbjct: 306 IIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEAMYQNV 344
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 32.0 bits (73), Expect = 0.008
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIIL--SDQAVSY 64
+M++CW+ V + RPT ++ + + I+ S+Q + Y
Sbjct: 324 MMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQEMGY 361
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 31.5 bits (72), Expect = 0.011
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVSYPDVI 68
IM+ CW R + + + ++ + Y DV+
Sbjct: 291 AIMRGCWQREPQQRHSIKDVHARLQALAQAPP--VYLDVL 328
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor,
receptor tyrosine kinase, spirocyc kinase domain,
phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus
musculus}
Length = 323
Score = 31.1 bits (71), Expect = 0.013
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVSYPD 66
+M +CW RP+ ++ + +I+ +S
Sbjct: 270 DLMYQCWSADPKQRPSFTCLRMELENILGHLSVLSTSQ 307
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease
mutation, glycoprotein, nucleot binding,
phosphorylation, receptor; HET: ADP; 1.90A {Homo
sapiens} PDB: 3bpr_A* 2p0c_A*
Length = 313
Score = 31.1 bits (71), Expect = 0.013
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAV 62
+IM CW RPT ++ + ++ S V
Sbjct: 280 EIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPDV 313
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 30.7 bits (70), Expect = 0.017
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVSYPDV 67
+M+ CW + RP+ I + + + ++A V
Sbjct: 307 NLMRLCWSKLPADRPSFCSIHRILQRMC--ERAEGTVGV 343
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.019
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 19 HACKDLHLVLKIMQECWYPVATARPTALRIKKTI 52
A K L LK+ Y +A P AL IK T+
Sbjct: 20 QALKKLQASLKL-----YADDSA-P-ALAIKATM 46
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 30.3 bits (69), Expect = 0.024
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSD 59
++ C RP+ I + + S+ D
Sbjct: 247 NLINNCMDYEPDHRPSFRAIIRDLNSLFTPD 277
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC, ATP-binding,
membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A
3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 30.2 bits (69), Expect = 0.026
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVS 63
+M CW + RP + +++ + ++ ++
Sbjct: 245 TLMTRCWDYDPSDRPRFTELVCSLSDVYQMEKDIA 279
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 30.2 bits (68), Expect = 0.028
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQ 60
+M +CW + RP +K +++I+ ++
Sbjct: 623 SLMTKCWAYDPSRRPRFTELKAQLSTILEEEK 654
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET:
ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A*
2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A*
2jko_A* 2jkk_A*
Length = 281
Score = 30.3 bits (69), Expect = 0.029
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQA 61
+M +CW + RP +K +++I+ ++A
Sbjct: 248 SLMTKCWAYDPSRRPRFTELKAQLSTILEEEKA 280
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; 2.40A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1xr0_A
Length = 370
Score = 30.0 bits (68), Expect = 0.031
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
+M++CW+ V + RPT ++ + + I+
Sbjct: 336 MMMRDCWHAVPSQRPTFKQLVEDLDRIL 363
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 30.0 bits (68), Expect = 0.032
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
++M+ CW RP+ L I +I +
Sbjct: 271 ELMRMCWQYNPKMRPSFLEIISSIKEEM 298
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo
sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A*
2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A*
2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A*
3ctj_A* ...
Length = 298
Score = 29.9 bits (68), Expect = 0.036
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVSY 64
++M +CW+P A RP+ + I++I + Y
Sbjct: 263 EVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHY 298
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 30.1 bits (68), Expect = 0.037
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
+IM +CW RP I + I
Sbjct: 317 RIMTQCWQHQPEDRPNFAIILERIEYCT 344
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding,
nucleotide serine/threonine-protein kinase, transferase,
signaling Pro; HET: ACP; 1.80A {Dictyostelium
discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Length = 287
Score = 30.0 bits (68), Expect = 0.037
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 5 VCLDQIRPAIPNRWHACKDLHLVLKIMQECWYPVATARPTALRIKKTIASI 55
+ + +RP IP + +++ CW RP I K ++ +
Sbjct: 242 IREEGLRPTIPEDCPP-----RLRNVIELCWSGDPKKRPHFSYIVKELSEL 287
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 30.0 bits (68), Expect = 0.037
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
+IM +CW RP I + I
Sbjct: 276 RIMTQCWQHQPEDRPNFAIILERIEYCT 303
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis,
nucleotide-binding, inhibitor, phosphorylation receptor,
transferase, transmembrane; HET: 00J; 1.50A {Homo
sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A*
3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A*
2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A*
3cpc_A* ...
Length = 316
Score = 29.9 bits (68), Expect = 0.038
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
+ M +CW+ + RPT + + + +++
Sbjct: 282 QTMLDCWHGEPSQRPTFSELVEHLGNLL 309
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 29.6 bits (67), Expect = 0.040
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 4 VVCLDQIRPAIPNRWHAC-KDLHLVLKIMQECWYPVATARPT 44
+V P + + C K + +++ +C V RP
Sbjct: 249 MVGRGYASPDLSKLYKNCPKAMK---RLVADCVKKVKEERPL 287
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene
homolog; kinase, structure, inhibitor, STI-571, gleevec,
transferase activator; HET: STI; 1.60A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Length = 313
Score = 29.5 bits (67), Expect = 0.046
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
IM+ CW RPT +I + I I
Sbjct: 279 DIMKTCWDADPLKRPTFKQIVQLIEKQI 306
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase
activator complex; HET: ADN; 2.00A {Homo sapiens}
Length = 307
Score = 29.2 bits (66), Expect = 0.061
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 5 VCLDQIRPAIPNRWHACKDLHLVLK-IMQECWYPVATARPTALRIKKTIASIILS----D 59
+ RP + K+L ++ +M CW + RP+ I K + ++ D
Sbjct: 216 AVHNGTRPPLI------KNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGAD 269
Query: 60 QAVSYP 65
+ + YP
Sbjct: 270 EPLQYP 275
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 29.1 bits (66), Expect = 0.063
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQ 60
+IM CW+ + RPT ++ +I + D+
Sbjct: 236 QIMYSCWHELPEKRPTFQQLLSSIEPLREKDK 267
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain,
kinase inhibitor complex, transferase; HET: 5CN; 1.80A
{Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A*
3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Length = 333
Score = 29.2 bits (66), Expect = 0.071
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSD 59
IMQ CW T RPT +I + D
Sbjct: 298 SIMQACWALEPTHRPTFQQICSFLQEQAQED 328
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 29.1 bits (66), Expect = 0.075
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
++M++CW RP+ I + + SI
Sbjct: 346 RLMEQCWAYEPGQRPSFSTIYQELQSIR 373
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 28.8 bits (65), Expect = 0.083
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 5 VCLDQIRPAIPNRWHACKDLHLVLKIMQECWYPVATARPT 44
V R IP + V I++ CW RP+
Sbjct: 251 VGFKCKRLEIPRNLNP-----QVAAIIEGCWTNEPWKRPS 285
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 28.8 bits (65), Expect = 0.084
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQ 60
++M +CW+ RP +I + ++I S +
Sbjct: 285 QLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE 316
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 28.7 bits (65), Expect = 0.084
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSD 59
IM CW+ A RPT + I ++ +
Sbjct: 252 TIMYSCWHEKADERPTFKILLSNILDVMDEE 282
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 28.7 bits (64), Expect = 0.085
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 30 IMQECWYPVATARPTALRIKKTIASII 56
M +CW+ + RPT + + + +++
Sbjct: 328 TMLDCWHGEPSQRPTFSELVEHLGNLL 354
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat,
ATP-binding, cell junction, cell membrane,
integrin-binding protein, membrane, nucleotide- binding;
1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A*
Length = 271
Score = 28.4 bits (64), Expect = 0.11
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 5 VCLDQIRPAIPNRWHACKDLHLVL-KIMQECWYPVATARPT 44
V L+ +RP IP + + K+M+ C RP
Sbjct: 223 VALEGLRPTIP------PGISPHVSKLMKICMNEDPAKRPK 257
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 28.4 bits (64), Expect = 0.12
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 5 VCLDQIRPAIPNRWHACKDLHLVLKIMQECWYPVATARPTALRIKKTIASI 55
V ++++ IP+ K+M++CW P +RP+ I + +I
Sbjct: 226 VAMNKLALPIPSTCPEP-----FAKLMEDCWNPDPHSRPSFTNILDQLTTI 271
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation,
cancer, PAN inhibitor, ATP-binding nucleotide-binding,
phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo
sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A*
Length = 318
Score = 28.5 bits (64), Expect = 0.13
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQA 61
+M+ CW A+ RPT + + ++ Q
Sbjct: 282 HLMKNCWETEASFRPTFENLIPILKTVHEKYQG 314
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 28.4 bits (64), Expect = 0.14
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
IM++CW A +RP + + +
Sbjct: 250 MIMRKCWMIDADSRPKFRELIIEFSKMA 277
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 28.0 bits (63), Expect = 0.14
Identities = 4/28 (14%), Positives = 15/28 (53%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
++M++CW + R + + + +++
Sbjct: 274 QLMRKCWEFQPSNRTSFQNLIEGFEALL 301
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor complex;
HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 28.0 bits (63), Expect = 0.16
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
+M CW R I K + ++
Sbjct: 266 DVMLGCWQREPQQRLNIKEIYKILHALG 293
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 28.1 bits (63), Expect = 0.17
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
++M +CW RP I + +I
Sbjct: 281 QLMMQCWQQERARRPKFADIVSILDKLI 308
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase,
phosphorylation, staurosporine, transferase; HET: STU;
2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Length = 278
Score = 27.9 bits (63), Expect = 0.17
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSD 59
++M+ CW+ A RP+ L++++ + I +
Sbjct: 245 EVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 28.0 bits (62), Expect = 0.18
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQA 61
+M +CW RP L +++ + + S +
Sbjct: 570 ALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 602
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A
{Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A*
2p4i_A* 3l8p_A* 2wqb_A*
Length = 327
Score = 28.0 bits (63), Expect = 0.19
Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 30 IMQECWYPVATARPTALRIKKTIASIILSDQAVSYPDV 67
+M++CW RP+ +I ++ ++ ++ +Y +
Sbjct: 273 LMRQCWREKPYERPSFAQILVSLNRML--EERKTYVNT 308
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 27.7 bits (62), Expect = 0.21
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 9 QIRPAIPNRWHACKDLHLVLKIMQECWYPVATARPTALRIKKTIASIILSDQAVSYP 65
++P + + I+ CW RPT ++ + + ++ +S+P
Sbjct: 258 GMKPNLSQIGMG----KEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRRLSHP 310
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 27.6 bits (62), Expect = 0.21
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 29 KIMQECWYPVATARPTALRIKKTI 52
+M ECW + RP I +
Sbjct: 261 ALMIECWNEFPSRRPRFKDIHSRL 284
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 27.7 bits (62), Expect = 0.22
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSD 59
+M+ CW+ A RPT L++++ + I +
Sbjct: 417 DVMKNCWHLDAATRPTFLQLREQLEHIRTHE 447
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 27.7 bits (62), Expect = 0.22
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 29 KIMQECWYPVATARPT 44
++M+ CW P RP+
Sbjct: 275 ELMKLCWAPSPQDRPS 290
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor,
ATP-binding, nucleotide-binding, oncogene, TRAN; HET:
B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A*
1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A*
3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A*
3oy3_A* 2hiw_A* 2v7a_A* ...
Length = 288
Score = 27.6 bits (62), Expect = 0.23
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVSYPD 66
++M+ CW + RP+ I + ++ +
Sbjct: 243 ELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVE 280
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 27.6 bits (62), Expect = 0.23
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
+IM CW RP R+ + +A I
Sbjct: 236 QIMNHCWRERPEDRPAFSRLLRQLAEIA 263
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 27.6 bits (62), Expect = 0.25
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQ 60
++M+ CW RPT ++ + + +
Sbjct: 241 QLMRLCWKERPEDRPTFDYLRSVLEDFFTATE 272
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 27.6 bits (62), Expect = 0.25
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILS 58
+M +CW RP L +++ + + S
Sbjct: 244 ALMSDCWIYKWEDRPDFLTVEQRMRACYYS 273
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 27.3 bits (61), Expect = 0.28
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
IM ECW RP+ + + I
Sbjct: 263 MIMTECWNNNVNQRPSFRDLALRVDQIR 290
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 27.3 bits (61), Expect = 0.31
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 29 KIMQECWYPVATARPT 44
+M +CW RPT
Sbjct: 248 MVMVKCWMIDENIRPT 263
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 27.3 bits (61), Expect = 0.33
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
IM +CW A +RP + + +
Sbjct: 250 MIMVKCWMIDADSRPKFRELIIEFSKMA 277
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 27.3 bits (61), Expect = 0.33
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 29 KIMQECWYPVATARPT 44
IM ECW RP+
Sbjct: 294 MIMTECWNNNVNQRPS 309
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 26.9 bits (60), Expect = 0.38
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASII 56
++M +CW RP +I + +I
Sbjct: 281 QLMLDCWQKDRNNRPKFEQIVSILDKLI 308
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 27.0 bits (60), Expect = 0.40
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQAVSYPDV 67
IM CW RPT I+ + + ++ Y ++
Sbjct: 416 NIMMRCWKNRPEERPTFEYIQSVLDDFYTATES-QYEEI 453
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 0.44
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 30/92 (32%)
Query: 5 VCLDQ-IRPAIPNR--W---HACKDLHLVLKIMQECWY---PVATARP------------ 43
VCL ++ + + W C VL+++Q+ Y P T+R
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 44 TALRIKKTIAS-------IILSDQAVSYPDVI 68
+++ + S ++L + V
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLN--VQNAKAW 259
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 26.8 bits (59), Expect = 0.46
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQ 60
+M +CW RPT ++ + S +
Sbjct: 495 DLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 526
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 26.9 bits (60), Expect = 0.47
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 4 VVCLDQIRPAIPNRWHAC-KDLHLVLKIMQECWYPVATARPT 44
+V + P + C K + ++M EC RP+
Sbjct: 237 MVGRGSLSPDLSKVRSNCPKRMK---RLMAECLKKKRDERPS 275
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 26.7 bits (59), Expect = 0.54
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSD 59
++M+ CW + RP+ I + ++
Sbjct: 450 ELMRACWQWNPSDRPSFAEIHQAFETMFQES 480
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 26.6 bits (59), Expect = 0.58
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILSDQ 60
+M +CW RPT ++ + S +
Sbjct: 412 DLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 443
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 26.4 bits (59), Expect = 0.63
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 29 KIMQECWYPVATARPT 44
+M +CW RPT
Sbjct: 256 NVMVQCWAHKPEDRPT 271
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A*
3vf9_A*
Length = 291
Score = 26.4 bits (59), Expect = 0.66
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 29 KIMQECWYPVATARPTALRIKKTIASIILS 58
+M CW RP ++ + +
Sbjct: 251 DLMNLCWTYDVENRPGFAAVELRLRNYYYD 280
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural
genomics consortium, SGC, PR kinase,
transferase-antibiotic complex; HET: STU GOL; 1.65A
{Homo sapiens}
Length = 310
Score = 26.1 bits (58), Expect = 0.79
Identities = 5/48 (10%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 11 RPAIPNRWHACKDLHLVLKIMQECWYPVATARPTALRIKKTIASIILS 58
P I C RP+ ++++ + ++ +
Sbjct: 241 DRYCPPNCPP-----SFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH 283
>2yf2_A C4B binding protein; immune system, complement system; 2.24A
{Gallus gallus}
Length = 65
Score = 25.1 bits (54), Expect = 0.96
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 21 CKDLHLVLKIMQECWYPVATARPTALRIKKTIASI 55
C ++ + ++ +C P + T L I+K I
Sbjct: 10 CGEVAYIQSVVSDCHVPTEDVK-TLLEIRKLFLEI 43
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles,
endocytosis, SELF- assembly, alpha-alpha superhelix;
2.60A {Bos taurus} SCOP: a.118.1.3
Length = 449
Score = 24.5 bits (53), Expect = 3.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 33 ECWYPVATARPTALRIKKTIASIILSDQAVSYPDVI 68
W +A A+ +K+ I S I +D SY +V+
Sbjct: 33 AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVV 68
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 24.2 bits (52), Expect = 4.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 33 ECWYPVATARPTALRIKKTIASIILSDQAVSYPDVI 68
W +A A+ +K+ I S I +D SY +V+
Sbjct: 55 AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVV 90
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 23.2 bits (51), Expect = 6.9
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 38 VATARPTALRIKKTIASIILSD 59
A+ARP+ +R++K + +
Sbjct: 17 PASARPSPVRLRKALFDYLRLR 38
>2de6_A Terminal oxygenase component of carbazole; electron transfer
complex, rieske non-heme iron oxygenase system,
terminal oxygenase; 1.80A {Janthinobacterium} SCOP:
b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Length = 392
Score = 23.4 bits (50), Expect = 9.4
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 6/25 (24%)
Query: 30 IMQECWYPVATA------RPTALRI 48
+ WYPV + P L++
Sbjct: 24 GFRNHWYPVMFSKEINEGEPKTLKL 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.136 0.439
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,047,478
Number of extensions: 44706
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 77
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)