BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10030
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/423 (47%), Positives = 282/423 (66%), Gaps = 20/423 (4%)
Query: 80 PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
P + G T D L + GL IS+ VAV++LAGGQGTRLG YPKGMY++GLPS
Sbjct: 73 PREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSR 132
Query: 140 KSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
K+LFQIQAE+I KL ++A++ +G+ C+ PW+IMTS T T+E+F ++ YFGL +VI
Sbjct: 133 KTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVI 192
Query: 199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
FF+Q +P S G+I+LE +++V+ +PDG+GGLY AL A I++ M RGI IHVYCV
Sbjct: 193 FFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252
Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
DNILVKV DP F+G+C+++GA CG KVVEK P E +GV+C VDG +++VEYSE+ + +
Sbjct: 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 311
Query: 319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGISQRPN 377
+ + GRL FN G+I NH+F++ L+ +V + L+ H+A+KKIP +D QG +P+
Sbjct: 312 AQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPD 371
Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
KPNGIK+EKF+FD F + V +EV R DEFSPLKN+ + DNP T A+ +LH
Sbjct: 372 KPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHC 431
Query: 437 WIETAGGVVVADETGNTV---------------CEIAPRVSYEGEGLEERVKGKVLQTPL 481
W+ AGG + DE G+ + CEI+P +SY GEGLE V K PL
Sbjct: 432 WVLNAGGHFI-DENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPL 490
Query: 482 LLE 484
+++
Sbjct: 491 IID 493
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 5 GVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
G T D L + GL IS+ VAV++LAGGQGTRLG YP
Sbjct: 78 GSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYP 121
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/440 (46%), Positives = 282/440 (64%), Gaps = 37/440 (8%)
Query: 80 PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
P + G T D L + GL IS+ VAV++LAGGQGTRLG YPKGMY++GLPS
Sbjct: 73 PREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSR 132
Query: 140 KSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
K+LFQIQAE+I KL ++A++ +G+ C+ PW+IMTS T T+E+F ++ YFGL +VI
Sbjct: 133 KTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVI 192
Query: 199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
FF+Q +P S G+I+LE +++V+ +PDG+GGLY AL A I++ M RGI IHVYCV
Sbjct: 193 FFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252
Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
DNILVKV DP F+G+C+++GA CG KVVEK P E +GV+C VDG +++VEYSE+ + +
Sbjct: 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 311
Query: 319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGISQRPN 377
+ + GRL FN G+I NH+F++ L+ +V + L+ H+A+KKIP +D QG +P+
Sbjct: 312 AQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPD 371
Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
KPNGIK+EKF+FD F + V +EV R DEFSPLKN+ + DNP T A+ +LH
Sbjct: 372 KPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHC 431
Query: 437 WIETAGGVVVADETGNTV--------------------------------CEIAPRVSYE 464
W+ AGG + DE G+ + CEI+P +SY
Sbjct: 432 WVLNAGGHFI-DENGSRLPAIPRSATNGKSETITADVNHNLKDANDVPIQCEISPLISYA 490
Query: 465 GEGLEERVKGKVLQTPLLLE 484
GEGLE V K PL+++
Sbjct: 491 GEGLESYVADKEFHAPLIID 510
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 5 GVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
G T D L + GL IS+ VAV++LAGGQGTRLG YP
Sbjct: 78 GSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYP 121
>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
pdb|1VM8|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
Length = 534
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/440 (45%), Positives = 277/440 (62%), Gaps = 37/440 (8%)
Query: 80 PNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139
P + G T D L + GL IS+ VAV++LAGGQGTRLG YPKG Y++GLPS
Sbjct: 85 PRQVLGSATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGXYDVGLPSH 144
Query: 140 KSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
K+LFQIQAE+I KL ++A++ G+ C +PW+I TS T T+E+F ++ +FGL +V+
Sbjct: 145 KTLFQIQAERILKLQQLAEKHHGNKCTIPWYIXTSGRTXESTKEFFTKHKFFGLKKENVV 204
Query: 199 FFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
FF+Q +P S G+I+LE +++V+ +PDG+GGLY AL A I++ RGI IHVYCV
Sbjct: 205 FFQQGXLPAXSFDGKIILEEKNKVSXAPDGNGGLYRALAAQNIVEDXEQRGICSIHVYCV 264
Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
DNILVKV DP F+G+C+++GA CG KVVEK P E +GV+C VDG +++VEYSE+ + +
Sbjct: 265 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI-SLAT 323
Query: 319 FETQDQTGRLKFNLGSICNHYFSLECLQRMVK-EDAALKFHMARKKIPCLDEQGISQRPN 377
+ + GRL FN G+I NH+F++ L+ +V + L+ H+A+KKIP +D QG +P+
Sbjct: 324 AQRRSSDGRLLFNAGNIANHFFTVPFLKDVVNVYEPQLQHHVAQKKIPYVDSQGYFIKPD 383
Query: 378 KPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHAR 436
KPNGIK EKF+FD F + V +EV R DEFSPLKN+ + DNP T A+ +LH
Sbjct: 384 KPNGIKXEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALXSLHHC 443
Query: 437 WIETAGGVVVADETGNTV--------------------------------CEIAPRVSYE 464
W+ AGG + DE G+ + CEI+P +SY
Sbjct: 444 WVLNAGGHFI-DENGSRLPAIPRSATNGKSEAITADVNHNLKDANDVPIQCEISPLISYA 502
Query: 465 GEGLEERVKGKVLQTPLLLE 484
GEGLE V K PL+++
Sbjct: 503 GEGLEGYVADKEFHAPLIID 522
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 5 GVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
G T D L + GL IS+ VAV++LAGGQGTRLG YP
Sbjct: 90 GSATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYP 133
>pdb|2YQC|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The Apo-Like
Form
pdb|2YQH|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQH|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQJ|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQJ|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQS|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Product-Binding Form
Length = 486
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 189/424 (44%), Positives = 255/424 (60%), Gaps = 29/424 (6%)
Query: 69 GVQLSEVQVFPPNCLSGVNTVDASTLG-------KYRELGLKLISRGDVAVIVLAGGQGT 121
+Q S+ N N ASTL + ELGLK I G+VAV+++AGGQGT
Sbjct: 56 AIQFSQTNSTSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGT 115
Query: 122 RLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP---WFIMTSELTDR 178
RLG+ PKG +NI LPS KSLFQIQAEKI K+ ++A++ S P W+IMTS T
Sbjct: 116 RLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRN 175
Query: 179 PTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSG-EILLETRDRVARSPDGHGGLYHALG 237
T +F N YFGL+ VIFF Q ++PCF+L G +ILLE ++ + +SPDG+GGLY AL
Sbjct: 176 ATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALK 235
Query: 238 ATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLG- 296
GILD ++++GIKHIH+YCVDN LVKV DP F+G+ + + KVV K ES+G
Sbjct: 236 DNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGL 295
Query: 297 -VLCNVDGKHKIVEYSELGN--CSVFETQDQTGRLKFNLGSICNHYFSLECLQRM----V 349
VL + K ++EYSE+ + + QD + +L +I NHY+S+E L +M +
Sbjct: 296 IVLDQDNQKPCVIEYSEISQELANKKDPQD-SSKLFLRAANIVNHYYSVEFLNKMIPKWI 354
Query: 350 KEDAALKFHMARKKIPCLD-EQGISQRPNKPNGIKLEKFLFDAFPLCE--NLVAWEVTR- 405
L FH+A+KKIP L+ E G +P +PNGIKLE+F+FD FP E EV R
Sbjct: 355 SSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVELNKFGCLEVDRL 414
Query: 406 DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEG 465
DEFSPLKN+ + +D P TC ++W+ GGV+ D G + E+ + SY G
Sbjct: 415 DEFSPLKNAD-GAKNDTPTTCRNHYLERSSKWVIQNGGVI--DNQG--LVEVDSKTSYGG 469
Query: 466 EGLE 469
EGLE
Sbjct: 470 EGLE 473
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 8 TVDAST--LGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
T+D S L + ELGLK I G+VAV+++AGGQGTRLG+ P
Sbjct: 80 TLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAP 122
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/402 (38%), Positives = 235/402 (58%), Gaps = 13/402 (3%)
Query: 86 VNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQI 145
NT+ + YR GL+LIS+G A+I AGGQG+RLG ++PKGM+ + KS+FQ+
Sbjct: 14 TNTIPVTKEHYYR--GLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQM 71
Query: 146 QAEKIDKLIEIAKEKFGSG--CLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQR 203
+E++ +L E+A E + WF+MT+E T YF+ + YFGL + F Q
Sbjct: 72 TSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQG 131
Query: 204 SMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV 263
+P +G+IL E +D+ +P+GHGGL+ AL GIL+ M+ +GIK+ + VDNIL
Sbjct: 132 MLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILC 191
Query: 264 KVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQD 323
K DP +GY + +K+V+K E +GVL + K+VEY+EL Q
Sbjct: 192 KDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTEL--TDELNKQL 249
Query: 324 QTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIK 383
G +N G I + +S L++ + L +H+A+KK+P ++EQGI P++ NGIK
Sbjct: 250 SNGEFIYNCGHISINGYSTSFLEKAA--EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIK 307
Query: 384 LEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAG 442
E F FD FPL + +E+ R EFS LKNS L+ + DN T + + L+ +++ AG
Sbjct: 308 KEIFFFDVFPLATKVSIFEIQRFIEFSALKNS-LNESFDNVNTVKRDWYRLNIYYLKKAG 366
Query: 443 GVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE 484
+V D++ + +CEI+ R S+E EGL+E KGK +Q P +L+
Sbjct: 367 AIV--DDSKSPICEISFRKSFEEEGLKE-FKGKTIQLPFILQ 405
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 6 VNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
NT+ + YR GL+LIS+G A+I AGGQG+RLG ++P
Sbjct: 14 TNTIPVTKEHYYR--GLELISQGKTALITPAGGQGSRLGFEHP 54
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 38/317 (11%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF 169
+ V+ L GG GT +G PK + IG+ + + + ++I+ L K + +P
Sbjct: 128 LVVVKLNGGLGTSMGCKGPKSL--IGVRNENTFLDLTVQQIEHL-----NKTYNTDVPLV 180
Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARS---- 225
+M S TD T++ ++ + + + F Q P ++ E LL V+ S
Sbjct: 181 LMNSFNTDEDTKKILQKYNHCRV---KIYTFNQSRYP--RINKESLLPVAKDVSYSGENT 235
Query: 226 ----PDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVE--QGA 279
P GHG +Y + +G+LDT G ++I V +DN+ V D L + + G
Sbjct: 236 EAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATV-DLYILNHLMNPPNGK 294
Query: 280 HCG--VKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICN 337
C ++V K G L +GK ++VE +++ V E + + KF + + N
Sbjct: 295 RCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVS---KFKIFNTNN 351
Query: 338 HYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCEN 397
+ SL ++R+ +++A + K LD G+ N I+LE + A EN
Sbjct: 352 LWISLAAVKRLQEQNAIDMEIIVNAK--TLD-GGL-------NVIQLETAVGAAIKSFEN 401
Query: 398 LVAWEVTRDEFSPLKNS 414
+ V R F P+K +
Sbjct: 402 SLGINVPRSRFLPVKTT 418
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 36/305 (11%)
Query: 117 GGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSEL 175
GG GT +G PK + I + G + + +I+ L K+G C +P +M S
Sbjct: 87 GGLGTTMGCTGPKSV--IEVRDGLTFLDLIVIQIENL----NNKYG--CKVPLVLMNSFN 138
Query: 176 TDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETR---DRVARSPDGHGGL 232
T T + E+ +D + F Q P + ++ D+ P GHG +
Sbjct: 139 THDDTHKIVEKYTNSNVD---IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDV 195
Query: 233 YHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPG 292
+ AL +G LDT ++G +++ V DN L + D T L + ++ ++V K
Sbjct: 196 FPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLIQNKNEYCMEVTPKTLAD 254
Query: 293 ESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKED 352
G L + +GK +++E +++ + V E + KF + + N + +L+ ++++V+ D
Sbjct: 255 VKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIE---KFKIFNTNNLWVNLKAIKKLVEAD 311
Query: 353 AALKFHMARKKIPCLDEQGISQRPNKPNGIK---LEKFLFDAFPLCENLVAWEVTRDEFS 409
ALK + IP P + +G+K LE A +N + V R F
Sbjct: 312 -ALKMEI----IP---------NPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFL 357
Query: 410 PLKNS 414
P+K S
Sbjct: 358 PVKAS 362
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 36/305 (11%)
Query: 117 GGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSEL 175
GG GT +G PK + I + G + + +I+ L K+G C +P +M S
Sbjct: 87 GGLGTTMGCTGPKSV--IEVRDGLTFLDLIVIQIENL----NNKYG--CKVPLVLMNSFN 138
Query: 176 TDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETR---DRVARSPDGHGGL 232
T T + E+ +D + F Q P + ++ D+ P GHG +
Sbjct: 139 THDDTHKIVEKYTNSNVD---IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDV 195
Query: 233 YHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPG 292
+ AL +G LDT ++G +++ V DN L + D T L + ++ ++V K
Sbjct: 196 FPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLIQNKNEYCMEVTPKTLAD 254
Query: 293 ESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKED 352
G L + +GK +++E +++ + V E + KF + + N + +L+ ++++V+ D
Sbjct: 255 VKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIE---KFKIFNTNNLWVNLKAIKKLVEAD 311
Query: 353 AALKFHMARKKIPCLDEQGISQRPNKPNGIK---LEKFLFDAFPLCENLVAWEVTRDEFS 409
ALK + IP P + +G+K LE A +N + V R F
Sbjct: 312 -ALKMEI----IP---------NPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFL 357
Query: 410 PLKNS 414
P+K S
Sbjct: 358 PVKAS 362
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 138/306 (45%), Gaps = 24/306 (7%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF 169
+AV+ L GG GT +G PK + I + G + + +I+ L ++ S +P
Sbjct: 93 LAVLKLNGGLGTSMGCVGPKSV--IEVREGNTFLDLSVRQIEYL----NRQYDSD-VPLL 145
Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRV---ARSP 226
+M S TD+ T ++ + + + F Q P + + T A P
Sbjct: 146 LMNSFNTDKDTEHLIKK---YSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYP 202
Query: 227 DGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVV 286
GHG L+ +L +G LD + +G + + V DN+ V D L + +E GA +++
Sbjct: 203 PGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATV-DLKILNHMIETGAEYIMELT 261
Query: 287 EKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346
+K G L + DG+ +++E +++ + E ++ FN N + +L+ ++
Sbjct: 262 DKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTN---NLWINLKAVK 318
Query: 347 RMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD 406
R++ E + L+ + IP +++ I++ ++ N ++LE A + V R
Sbjct: 319 RLI-ESSNLEMEI----IP--NQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRS 371
Query: 407 EFSPLK 412
F P+K
Sbjct: 372 RFLPVK 377
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWF 169
V+ L GG GT +G + PK + + +G++ A +++ ++ C +P+
Sbjct: 78 VVLKLNGGLGTGMGLNGPKSLLQV--KNGQTFLDFTALQLEHFRQV------RNCNVPFM 129
Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSG--EILLETRDRVARSPD 227
+M S T T+ + + I Q +P + E P
Sbjct: 130 LMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPP 189
Query: 228 GHGGLYHALGATGILDTMHTRGIKHIHVYCVDNI 261
GHG +Y L ++G LD + +G +++ + DN+
Sbjct: 190 GHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNL 223
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL 153
GD AV+VLA G GTR+ +D PK ++ + +G+S+ I KL
Sbjct: 7 GDTAVLVLAAGPGTRMRSDTPKVLHTL---AGRSMLSHVLHAIAKL 49
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGH 62
GD AV+VLA G GTR+ +D P + ++ + + H
Sbjct: 7 GDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSH 41
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL 153
GD AV+VLA G GTR+ +D PK ++ + +G+S+ I KL
Sbjct: 13 GDTAVLVLAAGPGTRMRSDTPKVLHTL---AGRSMLSHVLHAIAKL 55
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGH 62
GD AV+VLA G GTR+ +D P + ++ + + H
Sbjct: 13 GDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSH 47
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL 153
GD AV+VLA G GTR+ +D PK ++ + +G+S+ I KL
Sbjct: 11 GDTAVLVLAAGPGTRMRSDTPKVLHTL---AGRSMLSHVLHAIAKL 53
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGH 62
GD AV+VLA G GTR+ +D P + ++ + + H
Sbjct: 11 GDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSH 45
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL 153
GD AV+VLA G GTR+ +D PK ++ + +G+S+ I KL
Sbjct: 5 GDTAVLVLAAGPGTRMRSDTPKVLHTL---AGRSMLSHVLHAIAKL 47
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGH 62
GD AV+VLA G GTR+ +D P + ++ + + H
Sbjct: 5 GDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSH 39
>pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
pdb|2OEG|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
Length = 505
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 20/201 (9%)
Query: 225 SPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVK 284
+P GHG +Y AL +G L + +G ++ V DN+ + D L Y ++ +
Sbjct: 187 APPGHGDIYTALYGSGKLQELVEQGYRYXFVSNGDNLGATI-DKRVLAYXEKEKIDFLXE 245
Query: 285 VVEKITPGESLGVLC-----------NVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLG 333
V + + G L D + +++ E C + + K++
Sbjct: 246 VCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADXESFQDINKYSFF 305
Query: 334 SICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPN--KPNGIKLEKFLFDA 391
+ N + L L +E H +P + + N P +LE A
Sbjct: 306 NTNNLWIRLPVLLETXQE------HGGTLPLPVIRNEKTVDSSNSASPKVYQLETAXGAA 359
Query: 392 FPLCENLVAWEVTRDEFSPLK 412
E+ A V R F+P+K
Sbjct: 360 IAXFESASAIVVPRSRFAPVK 380
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 105 ISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL----------- 153
+S ++V++LA G+GTR+ +D PK ++ + +GK + Q + KL
Sbjct: 1 MSNSSMSVVILAAGKGTRMYSDLPKVLHPL---AGKPMVQHVIDAAMKLGAQHVHLVYGH 57
Query: 154 -IEIAKEKFGSGCLPWFIMTSEL 175
E+ K+ L W + +L
Sbjct: 58 GGELLKKTLADPSLNWVLQAEQL 80
>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
Length = 331
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ 144
++V++LA G+GTR+ +D PK ++ + +GK++ Q
Sbjct: 6 MSVVILAAGKGTRMYSDLPKVLHTL---AGKAMVQ 37
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ 144
++V++LA G+GTR+ +D PK ++ + +GK++ Q
Sbjct: 6 MSVVILAAGKGTRMYSDLPKVLHTL---AGKAMVQ 37
>pdb|1WIX|A Chain A, The Solution Structure Of Rsgi Ruh-026, Conserved Domain
Of Hook1 Protein From Mouse
Length = 164
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 392 FPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETG 451
PLC++L+ W T SP ++ N VT Q +H + W + + D+ G
Sbjct: 8 LPLCDSLIIWLQTFKTASPCQDV---KQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVG 64
Query: 452 N 452
+
Sbjct: 65 D 65
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 105 ISRGDVAVIVLAGGQGTRLGADYPKGMYNI-GLPSGKSLF----QIQAEKIDKLI----E 155
+++ ++ ++LA G+GTR+ +D PK ++ I G P K + Q+ +E I + +
Sbjct: 1 MTKKALSAVILAAGKGTRMYSDLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGD 60
Query: 156 IAKEKFGSGCLPWFIMTSEL 175
+ + + + W + T +L
Sbjct: 61 LMRTHLANEQVNWVLQTEQL 80
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL------------IEIAKE 159
V++LA G+GTR+ +D PK ++ + +GK + Q + KL E+ K+
Sbjct: 11 VVILAAGKGTRMYSDLPKVLHPL---AGKPMVQHVIDAAMKLGAQHVHLVYGHGGELLKK 67
Query: 160 KFGSGCLPWFIMTSEL 175
L W + +L
Sbjct: 68 TLADPSLNWVLQAEQL 83
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 53 SIKIQVYIGHGYQELSGVQLS----EVQVFPPNCLSGVNTVDASTLGKY--RELGLKLIS 106
S +I+VY+ + L+ V+++ ++ N LSG T T+ LG K+
Sbjct: 543 SNRIEVYVPNMAAGLTDVKVTAGGVSSNLYSYNILSGTQTSVVFTVKSAPPTNLGDKIYL 602
Query: 107 RGDVAVI---------VLAGGQGTRLGADYPKGMYNIGLPSGKSL-FQIQAEKIDKLIE 155
G++ + + QG L +YP Y +P+GK++ F+ ++ D I+
Sbjct: 603 TGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFIKRADGTIQ 661
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,372,903
Number of Sequences: 62578
Number of extensions: 681498
Number of successful extensions: 1556
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1495
Number of HSP's gapped (non-prelim): 42
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)