Query psy10030
Match_columns 484
No_of_seqs 290 out of 878
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 16:04:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02435 probable UDP-N-acetyl 100.0 6E-108 1E-112 862.2 35.7 404 70-484 77-492 (493)
2 PTZ00339 UDP-N-acetylglucosami 100.0 5E-100 1E-104 804.4 36.4 399 73-482 71-481 (482)
3 KOG2388|consensus 100.0 6.6E-96 1E-100 751.7 22.2 448 13-484 18-470 (477)
4 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 2E-87 4.3E-92 681.9 28.2 319 96-415 2-323 (323)
5 PLN02474 UTP--glucose-1-phosph 100.0 2.9E-81 6.4E-86 656.2 27.7 366 67-473 41-411 (469)
6 cd00897 UGPase_euk Eukaryotic 100.0 3.8E-81 8.1E-86 626.5 26.6 294 108-432 2-299 (300)
7 cd06424 UGGPase UGGPase cataly 100.0 1.4E-79 2.9E-84 617.1 24.5 295 110-414 1-314 (315)
8 PLN02830 UDP-sugar pyrophospho 100.0 2.2E-78 4.7E-83 653.9 32.8 389 38-445 61-484 (615)
9 PF01704 UDPGP: UTP--glucose-1 100.0 1.3E-78 2.7E-83 634.5 21.4 339 61-432 10-357 (420)
10 COG4284 UDP-glucose pyrophosph 100.0 1.5E-72 3.2E-77 580.6 27.1 388 70-481 72-467 (472)
11 cd04180 UGPase_euk_like Eukary 100.0 4.9E-65 1.1E-69 505.9 26.2 258 110-413 1-266 (266)
12 KOG2638|consensus 100.0 1.1E-65 2.4E-70 515.6 19.4 339 61-438 62-406 (498)
13 COG1207 GlmU N-acetylglucosami 99.8 3.5E-17 7.6E-22 167.7 19.9 252 109-450 2-262 (460)
14 PRK15480 glucose-1-phosphate t 99.4 1.6E-11 3.6E-16 124.1 18.1 180 109-348 3-187 (292)
15 TIGR01105 galF UTP-glucose-1-p 99.4 2.7E-11 5.9E-16 122.8 18.1 185 109-348 3-225 (297)
16 COG1208 GCD1 Nucleoside-diphos 99.3 3.2E-11 6.9E-16 125.4 16.5 179 110-346 2-184 (358)
17 TIGR01207 rmlA glucose-1-phosp 99.3 5.5E-11 1.2E-15 120.0 16.7 176 112-347 2-182 (286)
18 PRK14359 glmU bifunctional N-a 99.3 6.9E-10 1.5E-14 117.5 25.5 242 109-445 2-248 (430)
19 PLN02435 probable UDP-N-acetyl 99.3 2E-12 4.4E-17 137.8 4.4 92 5-99 92-198 (493)
20 PRK14356 glmU bifunctional N-a 99.3 5.4E-10 1.2E-14 119.3 22.5 181 109-349 5-188 (456)
21 PRK05293 glgC glucose-1-phosph 99.3 1.6E-10 3.5E-15 120.6 17.9 195 108-349 2-204 (380)
22 TIGR02092 glgD glucose-1-phosp 99.2 1.4E-10 3E-15 120.6 15.4 190 109-349 2-202 (369)
23 PRK10122 GalU regulator GalF; 99.2 5.1E-10 1.1E-14 113.5 18.9 186 109-349 3-226 (297)
24 cd02538 G1P_TT_short G1P_TT_sh 99.2 2.7E-10 5.9E-15 111.3 16.2 177 111-347 2-183 (240)
25 TIGR02623 G1P_cyt_trans glucos 99.2 5.9E-10 1.3E-14 110.4 18.4 192 112-346 2-196 (254)
26 cd06428 M1P_guanylylT_A_like_N 99.2 5.8E-10 1.3E-14 110.2 18.3 182 112-349 1-191 (257)
27 cd06425 M1P_guanylylT_B_like_N 99.2 5.6E-10 1.2E-14 108.6 17.2 182 111-349 2-187 (233)
28 cd04189 G1P_TT_long G1P_TT_lon 99.2 9.1E-10 2E-14 106.9 18.2 178 110-348 1-181 (236)
29 PF00483 NTP_transferase: Nucl 99.2 2E-10 4.3E-15 112.2 13.5 181 112-349 2-191 (248)
30 PRK00844 glgC glucose-1-phosph 99.2 1.2E-09 2.6E-14 115.5 19.0 201 108-349 4-211 (407)
31 cd06422 NTP_transferase_like_1 99.1 1.7E-09 3.6E-14 104.2 17.2 175 112-349 2-181 (221)
32 cd04197 eIF-2B_epsilon_N The N 99.1 1.3E-09 2.9E-14 105.1 16.3 160 111-314 2-177 (217)
33 PRK14358 glmU bifunctional N-a 99.1 3.4E-09 7.3E-14 114.4 21.2 176 109-343 7-184 (481)
34 PRK00725 glgC glucose-1-phosph 99.1 2.4E-09 5.3E-14 113.8 18.9 200 108-349 14-223 (425)
35 cd06915 NTP_transferase_WcbM_l 99.1 3.2E-09 7E-14 101.4 17.9 178 112-349 1-181 (223)
36 PRK14357 glmU bifunctional N-a 99.1 4.8E-09 1E-13 111.8 20.9 176 111-349 2-178 (448)
37 PRK14360 glmU bifunctional N-a 99.1 9E-09 1.9E-13 109.7 22.1 247 110-445 2-251 (450)
38 cd06426 NTP_transferase_like_2 99.1 4.9E-09 1.1E-13 100.6 17.3 173 112-348 1-176 (220)
39 TIGR01208 rmlA_long glucose-1- 99.1 5.1E-09 1.1E-13 108.3 17.9 177 112-348 2-182 (353)
40 cd04181 NTP_transferase NTP_tr 99.1 6.2E-09 1.4E-13 99.1 17.2 177 112-348 1-180 (217)
41 PLN02241 glucose-1-phosphate a 99.1 3.6E-09 7.7E-14 112.8 17.0 214 108-350 2-231 (436)
42 KOG1322|consensus 99.0 1.1E-08 2.3E-13 102.6 17.9 185 109-350 9-199 (371)
43 PTZ00339 UDP-N-acetylglucosami 99.0 1.6E-10 3.5E-15 123.5 5.3 108 4-116 82-211 (482)
44 KOG1460|consensus 99.0 8.5E-09 1.8E-13 101.9 16.4 242 109-415 2-254 (407)
45 PRK02862 glgC glucose-1-phosph 99.0 1.3E-08 2.7E-13 108.5 19.0 205 109-349 3-224 (429)
46 TIGR01099 galU UTP-glucose-1-p 99.0 7.4E-09 1.6E-13 102.3 16.0 202 111-349 2-214 (260)
47 KOG2388|consensus 99.0 1E-10 2.2E-15 122.2 2.6 107 9-118 77-202 (477)
48 PRK14355 glmU bifunctional N-a 99.0 4.2E-08 9E-13 105.2 22.7 183 109-349 3-187 (459)
49 COG1209 RfbA dTDP-glucose pyro 99.0 1.1E-08 2.4E-13 100.5 15.8 169 112-342 3-177 (286)
50 cd02524 G1P_cytidylyltransfera 99.0 1.7E-08 3.8E-13 99.5 17.3 190 112-348 1-199 (253)
51 PRK13389 UTP--glucose-1-phosph 99.0 2.3E-08 5E-13 101.7 17.6 195 110-346 9-226 (302)
52 PRK14352 glmU bifunctional N-a 99.0 1.8E-08 3.9E-13 108.7 17.8 183 109-349 4-190 (482)
53 cd02540 GT2_GlmU_N_bac N-termi 98.9 3.5E-08 7.7E-13 95.1 16.6 178 112-349 1-181 (229)
54 cd02508 ADP_Glucose_PP ADP-glu 98.9 2.9E-08 6.3E-13 94.4 15.1 139 112-285 1-145 (200)
55 cd02541 UGPase_prokaryotic Pro 98.9 3.6E-08 7.7E-13 97.9 16.3 196 111-348 2-213 (267)
56 cd02509 GDP-M1P_Guanylyltransf 98.9 2.5E-08 5.5E-13 100.0 14.8 192 111-350 2-207 (274)
57 PRK14353 glmU bifunctional N-a 98.9 6.7E-08 1.5E-12 103.0 18.1 181 109-349 5-188 (446)
58 PRK05450 3-deoxy-manno-octulos 98.8 9.1E-08 2E-12 93.6 16.1 183 109-349 2-193 (245)
59 TIGR02091 glgC glucose-1-phosp 98.8 1.5E-07 3.1E-12 97.7 16.4 197 112-349 1-205 (361)
60 cd02517 CMP-KDO-Synthetase CMP 98.8 5.1E-07 1.1E-11 88.0 18.7 182 109-349 1-190 (239)
61 cd02523 PC_cytidylyltransferas 98.8 2.1E-07 4.6E-12 90.0 15.7 173 112-349 1-177 (229)
62 PLN02830 UDP-sugar pyrophospho 98.8 5E-09 1.1E-13 114.9 4.4 103 11-118 112-234 (615)
63 PRK09451 glmU bifunctional N-a 98.8 2E-07 4.4E-12 99.7 16.6 178 109-349 5-184 (456)
64 cd04193 UDPGlcNAc_PPase UDPGlc 98.7 4.7E-09 1E-13 107.6 2.0 42 15-56 1-42 (323)
65 TIGR01173 glmU UDP-N-acetylglu 98.6 9.8E-07 2.1E-11 93.9 17.7 175 111-349 2-180 (451)
66 TIGR01479 GMP_PMI mannose-1-ph 98.6 4.6E-07 1E-11 97.6 15.1 190 111-350 2-209 (468)
67 cd04198 eIF-2B_gamma_N The N-t 98.6 1E-06 2.2E-11 84.9 15.7 133 111-289 2-139 (214)
68 PRK14354 glmU bifunctional N-a 98.6 9.8E-07 2.1E-11 94.3 17.1 180 109-349 2-184 (458)
69 PLN02917 CMP-KDO synthetase 98.6 3.7E-06 7.9E-11 85.3 19.0 174 109-348 47-236 (293)
70 cd04183 GT2_BcE_like GT2_BcbE_ 98.5 5.8E-06 1.3E-10 80.0 16.2 168 112-343 1-174 (231)
71 COG0448 GlgC ADP-glucose pyrop 98.4 3.4E-06 7.3E-11 87.3 13.8 200 108-351 4-210 (393)
72 cd06424 UGGPase UGGPase cataly 98.4 7.6E-08 1.6E-12 97.9 1.7 82 30-114 1-99 (315)
73 PRK13368 3-deoxy-manno-octulos 98.4 2.2E-05 4.7E-10 76.4 18.0 178 109-348 2-187 (238)
74 PF12804 NTP_transf_3: MobA-li 98.4 4.5E-06 9.7E-11 76.0 11.9 107 112-275 1-108 (160)
75 cd02507 eIF-2B_gamma_N_like Th 98.3 1E-05 2.3E-10 78.0 14.0 162 112-316 3-180 (216)
76 COG4284 UDP-glucose pyrophosph 98.3 1.4E-07 3.1E-12 99.1 0.9 63 21-87 97-164 (472)
77 TIGR00454 conserved hypothetic 98.3 5.6E-06 1.2E-10 78.2 11.6 62 110-186 1-62 (183)
78 COG1213 Predicted sugar nucleo 98.3 8.2E-06 1.8E-10 79.1 11.5 118 110-278 4-121 (239)
79 PF01704 UDPGP: UTP--glucose-1 98.2 5.1E-07 1.1E-11 95.6 3.1 77 11-88 37-116 (420)
80 cd00897 UGPase_euk Eukaryotic 98.2 3.7E-07 8E-12 92.5 1.5 69 28-101 2-75 (300)
81 cd02513 CMP-NeuAc_Synthase CMP 98.2 5.7E-05 1.2E-09 72.4 16.5 183 109-348 1-189 (223)
82 cd04182 GT_2_like_f GT_2_like_ 98.2 1.2E-05 2.7E-10 74.4 10.5 38 110-152 1-38 (186)
83 PRK13385 2-C-methyl-D-erythrit 98.1 2E-05 4.4E-10 76.7 10.5 118 110-276 3-121 (230)
84 COG0746 MobA Molybdopterin-gua 98.1 3.3E-05 7.1E-10 73.7 11.2 106 109-278 4-112 (192)
85 TIGR00466 kdsB 3-deoxy-D-manno 98.0 0.00035 7.6E-09 68.7 18.1 180 112-350 2-194 (238)
86 TIGR00453 ispD 2-C-methyl-D-er 98.0 3.7E-05 8E-10 73.8 10.4 39 111-152 1-39 (217)
87 cd02516 CDP-ME_synthetase CDP- 98.0 8.3E-05 1.8E-09 71.2 12.5 40 110-152 1-40 (218)
88 TIGR03310 matur_ygfJ molybdenu 97.9 6.7E-05 1.5E-09 70.0 9.7 36 112-152 2-37 (188)
89 cd02503 MobA MobA catalyzes th 97.9 0.00016 3.5E-09 67.2 12.1 37 111-152 2-38 (181)
90 PRK09382 ispDF bifunctional 2- 97.9 0.0003 6.5E-09 73.9 14.8 147 109-312 5-156 (378)
91 TIGR03202 pucB xanthine dehydr 97.8 0.00018 4E-09 67.6 11.6 37 111-152 2-38 (190)
92 cd04180 UGPase_euk_like Eukary 97.8 1.5E-05 3.3E-10 79.7 4.2 28 30-57 1-28 (266)
93 TIGR02665 molyb_mobA molybdopt 97.8 0.0002 4.4E-09 66.8 10.7 38 110-151 1-38 (186)
94 PLN02474 UTP--glucose-1-phosph 97.8 1.7E-05 3.8E-10 84.7 3.8 85 28-117 78-172 (469)
95 PRK00560 molybdopterin-guanine 97.8 6.1E-05 1.3E-09 71.8 7.1 41 107-152 6-47 (196)
96 PRK14489 putative bifunctional 97.7 0.00027 5.8E-09 74.0 11.9 39 109-151 5-43 (366)
97 PRK00155 ispD 2-C-methyl-D-ery 97.7 0.00026 5.6E-09 68.5 10.8 41 109-152 3-43 (227)
98 COG1210 GalU UDP-glucose pyrop 97.7 0.001 2.2E-08 66.1 14.0 159 111-315 6-194 (291)
99 PF01128 IspD: 2-C-methyl-D-er 97.6 8.2E-05 1.8E-09 72.5 5.4 64 110-186 1-65 (221)
100 COG0836 {ManC} Mannose-1-phosp 97.6 0.0017 3.6E-08 65.9 14.8 190 110-350 2-212 (333)
101 PLN02728 2-C-methyl-D-erythrit 97.6 0.0001 2.3E-09 73.2 5.7 42 108-152 23-64 (252)
102 COG2266 GTP:adenosylcobinamide 97.5 0.00018 3.8E-09 66.9 6.3 109 111-277 2-110 (177)
103 PRK02726 molybdopterin-guanine 97.5 0.00046 1E-08 65.9 9.5 38 109-151 7-44 (200)
104 PRK00317 mobA molybdopterin-gu 97.5 0.001 2.2E-08 62.8 11.3 39 109-151 3-41 (193)
105 PRK15460 cpsB mannose-1-phosph 97.5 0.002 4.4E-08 69.6 14.4 189 109-349 5-217 (478)
106 PRK14490 putative bifunctional 97.2 0.0028 6.1E-08 66.4 12.1 45 103-152 168-212 (369)
107 cd02518 GT2_SpsF SpsF is a gly 97.2 0.0044 9.5E-08 60.2 12.5 59 112-186 2-62 (233)
108 COG1211 IspD 4-diphosphocytidy 97.2 0.0026 5.7E-08 62.2 10.7 65 108-185 3-68 (230)
109 COG4750 LicC CTP:phosphocholin 96.8 0.0021 4.5E-08 60.7 5.1 61 111-186 2-65 (231)
110 PRK14500 putative bifunctional 96.6 0.0023 5E-08 66.5 4.6 41 107-152 158-198 (346)
111 TIGR03584 PseF pseudaminic aci 96.1 0.22 4.9E-06 48.4 15.5 181 112-347 2-185 (222)
112 COG2068 Uncharacterized MobA-r 95.6 0.076 1.6E-06 50.8 9.4 117 107-273 3-120 (199)
113 PF01128 IspD: 2-C-methyl-D-er 93.6 0.041 8.8E-07 53.7 2.3 26 30-55 1-26 (221)
114 PF14134 DUF4301: Domain of un 92.5 0.73 1.6E-05 49.7 9.7 119 126-262 165-295 (513)
115 PLN02728 2-C-methyl-D-erythrit 92.0 0.1 2.2E-06 52.0 2.5 39 26-64 21-59 (252)
116 PRK13385 2-C-methyl-D-erythrit 90.3 0.17 3.7E-06 49.1 2.2 26 30-55 3-28 (230)
117 KOG1462|consensus 88.2 0.75 1.6E-05 48.1 5.1 129 109-281 9-142 (433)
118 TIGR00453 ispD 2-C-methyl-D-er 86.1 0.43 9.3E-06 45.6 1.9 24 32-55 2-25 (217)
119 PRK00560 molybdopterin-guanine 84.9 0.59 1.3E-05 44.4 2.2 28 25-54 4-31 (196)
120 PRK00155 ispD 2-C-methyl-D-ery 84.2 0.69 1.5E-05 44.5 2.4 26 29-54 3-28 (227)
121 COG1212 KdsB CMP-2-keto-3-deox 84.1 6.3 0.00014 38.6 8.8 88 109-209 3-106 (247)
122 TIGR00454 conserved hypothetic 83.9 0.66 1.4E-05 43.7 2.1 34 32-66 3-36 (183)
123 PRK14356 glmU bifunctional N-a 83.7 0.74 1.6E-05 49.2 2.6 39 29-67 5-43 (456)
124 cd02516 CDP-ME_synthetase CDP- 82.6 0.81 1.8E-05 43.5 2.1 25 30-54 1-25 (218)
125 PRK09382 ispDF bifunctional 2- 82.0 0.86 1.9E-05 48.1 2.2 39 29-67 5-43 (378)
126 COG1211 IspD 4-diphosphocytidy 82.0 0.98 2.1E-05 44.4 2.5 42 27-68 2-43 (230)
127 cd04182 GT_2_like_f GT_2_like_ 81.4 0.94 2E-05 41.5 2.0 24 30-55 1-24 (186)
128 COG1213 Predicted sugar nucleo 81.2 0.86 1.9E-05 44.7 1.7 24 32-55 6-29 (239)
129 cd02509 GDP-M1P_Guanylyltransf 80.0 1 2.3E-05 45.1 2.0 24 32-55 3-30 (274)
130 PRK02726 molybdopterin-guanine 79.9 1.1 2.5E-05 42.5 2.1 25 28-54 6-30 (200)
131 TIGR02665 molyb_mobA molybdopt 79.9 1.1 2.5E-05 41.4 2.1 24 30-54 1-24 (186)
132 PRK14490 putative bifunctional 79.3 2 4.3E-05 45.0 3.9 31 22-54 167-197 (369)
133 PF12804 NTP_transf_3: MobA-li 79.0 1.2 2.6E-05 40.1 1.9 35 32-68 1-35 (160)
134 PRK00317 mobA molybdopterin-gu 78.7 1.5 3.2E-05 41.1 2.5 25 29-54 3-27 (193)
135 PRK14360 glmU bifunctional N-a 78.0 1.5 3.2E-05 46.8 2.5 40 29-68 1-40 (450)
136 COG1861 SpsF Spore coat polysa 77.8 39 0.00084 33.2 11.7 119 108-283 2-126 (241)
137 TIGR03202 pucB xanthine dehydr 77.6 1.4 3.1E-05 41.1 2.0 22 31-54 2-23 (190)
138 cd02503 MobA MobA catalyzes th 77.5 1.3 2.9E-05 40.7 1.8 23 31-55 2-24 (181)
139 cd06915 NTP_transferase_WcbM_l 77.5 1.3 2.8E-05 41.8 1.8 36 32-67 1-39 (223)
140 cd04183 GT2_BcE_like GT2_BcbE_ 77.4 1.3 2.8E-05 42.5 1.7 34 32-65 1-37 (231)
141 TIGR03310 matur_ygfJ molybdenu 77.0 1.4 3E-05 40.7 1.8 22 32-55 2-23 (188)
142 PRK14489 putative bifunctional 76.2 1.7 3.7E-05 45.5 2.3 36 29-65 5-40 (366)
143 cd02508 ADP_Glucose_PP ADP-glu 76.1 1.4 3.1E-05 41.5 1.5 23 33-55 2-27 (200)
144 cd02540 GT2_GlmU_N_bac N-termi 75.9 1.5 3.3E-05 41.8 1.7 36 32-67 1-36 (229)
145 cd04198 eIF-2B_gamma_N The N-t 75.8 1.8 3.8E-05 41.5 2.1 33 32-64 3-38 (214)
146 cd06426 NTP_transferase_like_2 75.2 1.5 3.3E-05 41.6 1.5 37 32-68 1-40 (220)
147 PRK14359 glmU bifunctional N-a 74.6 1.9 4.1E-05 45.7 2.1 39 30-68 3-41 (430)
148 PRK14353 glmU bifunctional N-a 74.0 2.4 5.2E-05 45.2 2.8 40 28-67 4-43 (446)
149 TIGR01479 GMP_PMI mannose-1-ph 74.0 1.9 4.2E-05 46.7 2.1 36 32-67 3-43 (468)
150 PRK14352 glmU bifunctional N-a 73.8 2.3 4.9E-05 46.1 2.6 41 28-68 3-43 (482)
151 PRK00844 glgC glucose-1-phosph 73.1 2.5 5.4E-05 44.8 2.6 28 28-55 4-34 (407)
152 cd04189 G1P_TT_long G1P_TT_lon 72.6 2.4 5.2E-05 40.7 2.2 37 31-67 2-41 (236)
153 cd04197 eIF-2B_epsilon_N The N 71.9 2.4 5.2E-05 40.6 2.0 24 32-55 3-29 (217)
154 COG2266 GTP:adenosylcobinamide 71.6 2.3 4.9E-05 40.0 1.7 22 31-53 2-23 (177)
155 PRK05293 glgC glucose-1-phosph 71.4 2.7 5.8E-05 43.9 2.3 27 29-55 3-32 (380)
156 TIGR01173 glmU UDP-N-acetylglu 71.4 2.3 4.9E-05 45.3 1.8 36 32-67 3-38 (451)
157 PRK09451 glmU bifunctional N-a 71.1 3.1 6.8E-05 44.6 2.9 39 29-67 5-43 (456)
158 cd06422 NTP_transferase_like_1 70.6 2.8 6E-05 40.0 2.1 36 32-67 2-40 (221)
159 PRK14358 glmU bifunctional N-a 68.5 3.2 7E-05 45.0 2.3 39 29-67 7-45 (481)
160 PRK14500 putative bifunctional 68.4 3.3 7.2E-05 43.2 2.2 26 27-54 158-183 (346)
161 PRK15480 glucose-1-phosphate t 68.2 3.2 6.8E-05 42.2 2.0 35 30-64 4-41 (292)
162 cd02538 G1P_TT_short G1P_TT_sh 67.7 3.3 7.1E-05 40.1 2.0 35 32-66 3-40 (240)
163 cd02507 eIF-2B_gamma_N_like Th 67.7 3.5 7.5E-05 39.6 2.1 24 32-55 3-29 (216)
164 TIGR01099 galU UTP-glucose-1-p 67.4 3.4 7.4E-05 40.5 2.0 24 32-55 3-29 (260)
165 PRK10122 GalU regulator GalF; 67.3 4 8.7E-05 41.5 2.5 27 29-55 3-32 (297)
166 TIGR01105 galF UTP-glucose-1-p 66.7 3.6 7.8E-05 41.9 2.1 37 31-67 5-44 (297)
167 TIGR01207 rmlA glucose-1-phosp 65.1 4 8.6E-05 41.3 2.0 24 32-55 2-28 (286)
168 cd02524 G1P_cytidylyltransfera 63.4 4 8.7E-05 40.0 1.7 36 32-67 1-39 (253)
169 COG0836 {ManC} Mannose-1-phosp 63.3 20 0.00044 36.9 6.6 23 32-54 4-30 (333)
170 cd02523 PC_cytidylyltransferas 62.6 4.1 8.9E-05 39.0 1.5 34 33-66 2-38 (229)
171 PF00483 NTP_transferase: Nucl 62.4 4.2 9.2E-05 39.2 1.6 32 33-64 3-38 (248)
172 cd02541 UGPase_prokaryotic Pro 61.8 5.1 0.00011 39.5 2.1 34 32-65 3-39 (267)
173 cd06425 M1P_guanylylT_B_like_N 61.6 5.2 0.00011 38.5 2.0 37 32-68 3-42 (233)
174 PRK00725 glgC glucose-1-phosph 61.4 5.2 0.00011 42.7 2.2 28 28-55 14-44 (425)
175 cd04181 NTP_transferase NTP_tr 60.7 4.5 9.6E-05 38.0 1.4 35 33-67 2-39 (217)
176 TIGR02623 G1P_cyt_trans glucos 59.1 5.9 0.00013 39.0 2.0 37 32-68 2-41 (254)
177 PF02348 CTP_transf_3: Cytidyl 58.8 46 0.001 31.3 8.1 36 112-153 2-37 (217)
178 PRK02862 glgC glucose-1-phosph 58.7 5.9 0.00013 42.4 2.0 27 29-55 3-32 (429)
179 TIGR02092 glgD glucose-1-phosp 57.7 7.5 0.00016 40.4 2.6 27 29-55 2-31 (369)
180 TIGR02091 glgC glucose-1-phosp 56.9 5.8 0.00013 41.0 1.6 23 33-55 2-27 (361)
181 PRK14354 glmU bifunctional N-a 54.8 7.9 0.00017 41.3 2.2 37 31-67 4-40 (458)
182 COG1209 RfbA dTDP-glucose pyro 52.7 7.9 0.00017 39.0 1.6 11 33-43 4-14 (286)
183 PRK14357 glmU bifunctional N-a 52.1 8.9 0.00019 40.9 2.1 34 32-65 3-36 (448)
184 COG0746 MobA Molybdopterin-gua 51.7 9.3 0.0002 36.4 1.9 31 29-62 4-34 (192)
185 PRK14355 glmU bifunctional N-a 50.8 11 0.00023 40.6 2.4 39 29-67 3-41 (459)
186 cd06428 M1P_guanylylT_A_like_N 50.5 9.3 0.0002 37.4 1.8 33 33-65 2-39 (257)
187 TIGR01208 rmlA_long glucose-1- 50.5 9.9 0.00021 39.2 2.1 36 32-67 2-40 (353)
188 PRK13389 UTP--glucose-1-phosph 45.7 15 0.00033 37.4 2.5 35 31-65 10-47 (302)
189 COG1207 GlmU N-acetylglucosami 44.4 16 0.00036 39.0 2.5 36 30-65 3-38 (460)
190 cd02517 CMP-KDO-Synthetase CMP 42.8 18 0.00039 34.8 2.4 35 30-67 2-36 (239)
191 PLN02241 glucose-1-phosphate a 42.2 17 0.00037 38.9 2.3 27 29-55 3-32 (436)
192 PF14134 DUF4301: Domain of un 41.7 25 0.00053 38.3 3.4 106 290-415 385-505 (513)
193 PRK05450 3-deoxy-manno-octulos 39.0 22 0.00047 34.4 2.3 37 29-68 2-38 (245)
194 cd02513 CMP-NeuAc_Synthase CMP 38.6 22 0.00048 33.6 2.3 23 29-54 1-23 (223)
195 PRK15460 cpsB mannose-1-phosph 36.2 27 0.00059 38.1 2.8 25 30-54 6-34 (478)
196 KOG0734|consensus 31.9 41 0.00089 37.3 3.2 55 120-187 329-392 (752)
197 COG2068 Uncharacterized MobA-r 31.8 34 0.00074 32.9 2.3 35 26-62 2-36 (199)
198 KOG2638|consensus 31.3 29 0.00063 37.0 1.9 27 28-54 102-128 (498)
199 KOG1322|consensus 30.8 1.3E+02 0.0028 31.4 6.3 28 166-193 113-141 (371)
200 PRK10834 vancomycin high tempe 30.0 18 0.0004 35.8 0.2 85 99-193 71-163 (239)
201 PRK00576 molybdopterin-guanine 29.7 4.3E+02 0.0094 24.0 10.7 22 127-151 3-26 (178)
202 KOG1461|consensus 26.7 9.9E+02 0.021 27.2 15.1 138 108-289 23-167 (673)
203 COG1535 EntB Isochorismate hyd 25.6 5.3E+02 0.012 24.7 8.9 94 139-258 49-151 (218)
204 COG2240 PdxK Pyridoxal/pyridox 25.5 40 0.00087 34.2 1.7 20 223-242 209-228 (281)
205 PF03641 Lysine_decarbox: Poss 25.4 1.5E+02 0.0033 26.2 5.3 22 164-185 83-104 (133)
206 TIGR00466 kdsB 3-deoxy-D-manno 25.0 43 0.00094 32.7 1.8 21 32-55 2-22 (238)
207 COG0448 GlgC ADP-glucose pyrop 24.6 46 0.00099 35.3 2.0 16 28-43 4-19 (393)
208 TIGR02180 GRX_euk Glutaredoxin 22.9 2.3E+02 0.005 21.9 5.4 56 166-245 28-83 (84)
209 PF10662 PduV-EutP: Ethanolami 22.9 44 0.00096 30.4 1.3 30 431-471 108-137 (143)
210 TIGR03164 UHCUDC OHCU decarbox 22.1 1.7E+02 0.0037 27.0 5.0 39 146-187 92-130 (157)
211 PRK13368 3-deoxy-manno-octulos 21.7 66 0.0014 30.8 2.3 36 29-67 2-37 (238)
212 cd02518 GT2_SpsF SpsF is a gly 21.5 56 0.0012 31.3 1.8 19 33-54 3-21 (233)
213 PLN02917 CMP-KDO synthetase 21.4 65 0.0014 32.7 2.3 24 29-55 47-70 (293)
No 1
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=5.6e-108 Score=862.19 Aligned_cols=404 Identities=41% Similarity=0.750 Sum_probs=377.2
Q ss_pred ccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHH
Q psy10030 70 VQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEK 149 (484)
Q Consensus 70 i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~ 149 (484)
..++.++|+|.....++.+.+.++..+|+++|+++|++||||||+||||||||||+++||||++|++|+++||||++++|
T Consensus 77 ~~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~ 156 (493)
T PLN02435 77 LPVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAER 156 (493)
T ss_pred CchhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHH
Confidence 46678999888777777666667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC----C-ccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCccee
Q psy10030 150 IDKLIEIAKEKFG----S-GCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVAR 224 (484)
Q Consensus 150 i~~l~~l~~~~~g----~-~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~ 224 (484)
|+++|+++.+++| . +.|||+||||+.||++|++||++|+|||++++||+||+|+++||++.+|+++++++++++|
T Consensus 157 I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~ 236 (493)
T PLN02435 157 ILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAK 236 (493)
T ss_pred HHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCccccc
Confidence 9999999876553 1 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEE--EC
Q psy10030 225 SPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN--VD 302 (484)
Q Consensus 225 ~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~--~~ 302 (484)
+|+||||+|.+|.++|+|++|+++|++|+||+|+||+|++++||.||||++.+++++++|||+|++|+|++|++|+ .+
T Consensus 237 ~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~ 316 (493)
T PLN02435 237 APDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG 316 (493)
T ss_pred CCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 58
Q ss_pred CeEEEEEeccCCcccccccccCC-CcccccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCc
Q psy10030 303 GKHKIVEYSELGNCSVFETQDQT-GRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPN 380 (484)
Q Consensus 303 g~~~vvEyse~~~e~~~~~~~~~-g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn 380 (484)
|+++||||+|++++ +++.++++ |++.|++||||||||+++||+++++. ...||||+|.|||||+|. +||
T Consensus 317 g~~~vvEYsEl~~~-~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~--------~~n 387 (493)
T PLN02435 317 GPLTVVEYSELDQA-MASAINQQTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHG--------YTM 387 (493)
T ss_pred CCEEEEEeccCCHH-HHhccCccccccccchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCC--------Ccc
Confidence 99999999999999 88887765 99999999999999999999999764 456999999999999982 579
Q ss_pred cchhhhhhhcccccCCceEEEEEecc-ccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCC--CCeeEEE
Q psy10030 381 GIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADET--GNTVCEI 457 (484)
Q Consensus 381 ~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~--~~~~iei 457 (484)
|||||+||||+|++++++.+++|+|+ |||||||++|. +.|||+|||++|+++|++||+++|+.++ ++. ....|||
T Consensus 388 giK~E~FiFDvf~~a~~~~~~eV~R~~EFaPlKN~~g~-~~Dsp~tar~~l~~~~~~wl~~aG~~~~-~~~~~~~~~vEi 465 (493)
T PLN02435 388 GLKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGS-NFDTPESARLLVLRLHTRWVVAAGGFLT-HSVPLYATGVEV 465 (493)
T ss_pred eEEeeeeeecchhhcCceEEEEEchhhccCcccCCCCC-CCCCHHHHHHHHHHHHHHHHHHcCCEec-CCccccCCcEEe
Confidence 99999999999999999999999999 99999999986 6799999999999999999999999773 221 1247999
Q ss_pred ccceeeecCCccccccCcccCCCcccC
Q psy10030 458 APRVSYEGEGLEERVKGKVLQTPLLLE 484 (484)
Q Consensus 458 sp~vsy~gE~l~~~~~~~~~~~p~~~~ 484 (484)
||++||+||||+++++|++|+.|.+|+
T Consensus 466 sP~~sY~gE~L~~~~~~~~~~~~~~~~ 492 (493)
T PLN02435 466 SPLCSYAGENLEAICRGRTFHAPCEIS 492 (493)
T ss_pred CCceeeCCCCchhhcCCCeecCceeec
Confidence 999999999999888999999999885
No 2
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=4.6e-100 Score=804.39 Aligned_cols=399 Identities=38% Similarity=0.667 Sum_probs=365.4
Q ss_pred cccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 73 SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 73 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
..++|+|.....+..+ ..+++.+|+++|+++|++||||+|+||||+|||||++.||+|+||++++++||||+++++|++
T Consensus 71 ~~~~p~~~~~~~~~~~-~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~ 149 (482)
T PTZ00339 71 CNIEPPNNNTFIDIYE-KEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRR 149 (482)
T ss_pred cccCCCCccccccccc-CHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHH
Confidence 4588998877666655 467889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC---ccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCcccccc-CCcccccCCCcceeccCC
Q psy10030 153 LIEIAKEKFGS---GCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSL-SGEILLETRDRVARSPDG 228 (484)
Q Consensus 153 l~~l~~~~~g~---~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~-~g~~~l~~~~~i~~~P~G 228 (484)
+++++.+++|. +.|||+||||++||+.|++||++|+|||+++++|+||+|+++||++. +|+++++++++++|+|+|
T Consensus 150 l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~G 229 (482)
T PTZ00339 150 LEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGG 229 (482)
T ss_pred HhhhhhcccccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCC
Confidence 99888655541 67999999999999999999999999999999999999999999985 599999999999999999
Q ss_pred CchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCC-ceEEEEEEccCCCcccceEEEECCeEEE
Q psy10030 229 HGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGA-HCGVKVVEKITPGESLGVLCNVDGKHKI 307 (484)
Q Consensus 229 ~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~-~~~~~vv~k~~~~e~~G~l~~~~g~~~v 307 (484)
|||+|.+|.++|+|++|.++|++|+||+|+||+|++++||.||||++++++ +++.+|+ |+.|+|++|++|+.+|++++
T Consensus 230 nGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~~g~~~v 308 (482)
T PTZ00339 230 NGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KREDDESVGVFCLKDYEWQV 308 (482)
T ss_pred CcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeee-cCCCCCceeEEEEeCCcccE
Confidence 999999999999999999999999999999999999999999999999999 9999999 66799999999999999999
Q ss_pred EEeccCCcccccccccC-CCcccccccceeeeeecHHHHHHHhhc--cccchhhhhccCCCccCCCCCeecCCCCccchh
Q psy10030 308 VEYSELGNCSVFETQDQ-TGRLKFNLGSICNHYFSLECLQRMVKE--DAALKFHMARKKIPCLDEQGISQRPNKPNGIKL 384 (484)
Q Consensus 308 vEyse~~~e~~~~~~~~-~g~~~f~~~Ni~~~~~~l~~l~~~~~~--~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~kl 384 (484)
|||+|++++ +++.++. +|.+.|++||||||||+++||+++++. ...||+|+|.|||||+|... ++|||+||
T Consensus 309 vEYsEi~~~-~~~~~~~~~g~l~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~-----~~png~K~ 382 (482)
T PTZ00339 309 VEYTEINER-ILNNDELLTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPT-----DKTMGIKL 382 (482)
T ss_pred EEEeccChh-hhhcccccCCeecccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCC-----CCcceeee
Confidence 999999999 8887776 499999999999999999999998753 45699999999999999322 57999999
Q ss_pred hhhhhcccccCCceEEEEEecc-ccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCC--CCeeEEEccce
Q psy10030 385 EKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADET--GNTVCEIAPRV 461 (484)
Q Consensus 385 E~~i~D~~~~~~~~~~~~V~R~-~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~--~~~~ieisp~v 461 (484)
|+||||+|++++++.+++|+|+ |||||||++|. +.|||+|||++|+++|++||+++|+++ .++. ....|||||++
T Consensus 383 E~FiFDvf~~~~~~~~~ev~R~~eFsPlKNa~g~-~~d~p~tar~~l~~~~~~wl~~ag~~~-~~~~~~~~~~~Eisp~~ 460 (482)
T PTZ00339 383 EAFIFDIFRYAKNVLILEVDREDEFAPIKNADGA-AADTILNAQKLLLSLHTRWLEAALETV-AGNPREGLNLCEISPLV 460 (482)
T ss_pred hhhhhhHHHhccccceeeechhhccccccCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCee-eccccCCCceEEecCcc
Confidence 9999999999999999999999 99999999997 789999999999999999999999988 3321 23479999999
Q ss_pred eeecCCccccccCcccCC-Ccc
Q psy10030 462 SYEGEGLEERVKGKVLQT-PLL 482 (484)
Q Consensus 462 sy~gE~l~~~~~~~~~~~-p~~ 482 (484)
||+||||+ .++|+++.. |++
T Consensus 461 sy~ge~l~-~~~~~~~~~~~~~ 481 (482)
T PTZ00339 461 SYGGEGLF-QYPGKKILGLPEI 481 (482)
T ss_pred eeCCCCcc-cccCceecCCCCc
Confidence 99999998 668987774 554
No 3
>KOG2388|consensus
Probab=100.00 E-value=6.6e-96 Score=751.67 Aligned_cols=448 Identities=44% Similarity=0.758 Sum_probs=407.0
Q ss_pred HHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccccccccccccCCCCcccCCCCCChh
Q psy10030 13 TLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDAS 92 (484)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~~p~~~~~~~~~~~~~~~ 92 (484)
.+.+|.+.+.+.=.. ++ =|-.+|+.+++.|.+.+..... .+ .-.+++|.|+...........+
T Consensus 18 l~~~w~eL~~~~~~~------l~--~~ie~l~l~~~~~~~~~~a~~~------~~---~~~~~~p~p~~~~~~~~~~~~~ 80 (477)
T KOG2388|consen 18 LFTQWPELSEADKES------LL--DQIEVLNLSRIHGLQRISANED------SK---PVGEIRPVPESKSWPLKERGLD 80 (477)
T ss_pred HhhhchhcCHHHHHH------HH--HHHHhhcccccchhhhcChhhc------cC---cccccCCCCccccceecccCch
Confidence 345676655443321 11 3556778899999997433211 11 2246788877666666555666
Q ss_pred hHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCC-ccccEEEE
Q psy10030 93 TLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGS-GCLPWFIM 171 (484)
Q Consensus 93 ~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~-~~ipl~iM 171 (484)
+...|+..|+.+|++|++|+++||||||||||++.|||++++|+++++|+||+++++|+++|++++...+. +.||||||
T Consensus 81 d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~Im 160 (477)
T KOG2388|consen 81 DVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIM 160 (477)
T ss_pred hhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEe
Confidence 67779999999999999999999999999999999999999999999999999999999999988765544 89999999
Q ss_pred eCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCe
Q psy10030 172 TSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK 251 (484)
Q Consensus 172 tS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~ 251 (484)
||..|++.|.+||+.|+|||++++||+||+|+++||++.+|+++++.+.+++++|+||||+|.++.++ |++|.++|+.
T Consensus 161 tS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~ 238 (477)
T KOG2388|consen 161 TSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAARGIF 238 (477)
T ss_pred cCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhh--hhHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred EEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEEC-CeEEEEEeccCCcccccccccCC-Cccc
Q psy10030 252 HIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVD-GKHKIVEYSELGNCSVFETQDQT-GRLK 329 (484)
Q Consensus 252 ~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~-g~~~vvEyse~~~e~~~~~~~~~-g~~~ 329 (484)
|++|+||||+|++++||.|+||++.+++++++++|+|.+|.|.+|++|..+ |++++|||||++.+ +++.+..+ |++.
T Consensus 239 ~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~G~~~vvEYsEi~~~-~a~~~~~d~g~l~ 317 (477)
T KOG2388|consen 239 YDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQGTPLVVEYSELDAE-LAKAKAPDGGRLL 317 (477)
T ss_pred EEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEecCCCceeEEEecccCHH-HHhhcccccCccc
Confidence 999999999999999999999999999999999999999999999999998 99999999999999 99999888 8999
Q ss_pred ccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-c
Q psy10030 330 FNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-E 407 (484)
Q Consensus 330 f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~ 407 (484)
|++||||||+|+++||+++... ...||+|++.||+||+|++|++++|++|||+|+|+||||+|+++++|++++|+|+ +
T Consensus 318 ~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E~fifdvf~~~k~f~~meV~Re~e 397 (477)
T KOG2388|consen 318 FNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLEQFIFDVFPSAKKFGLMEVPREEE 397 (477)
T ss_pred cCCccHHHHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEEeeeeeecccccceeEEecchhhh
Confidence 9999999999999999999887 6779999999999999999999999999999999999999999999999999999 9
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCCCCeeEEEccceeeecCCccccccCcccCCCcccC
Q psy10030 408 FSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE 484 (484)
Q Consensus 408 FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~ieisp~vsy~gE~l~~~~~~~~~~~p~~~~ 484 (484)
|||+||..++ +.|||+||+.+++++|++|+.++|++| .+. +.+|||||+|||+||+||++..|++|++|+|++
T Consensus 398 fSPlKng~~~-~~D~p~T~~~~~l~~h~~wi~~~g~~f-~~~--~~~~evs~~vsy~GE~lEs~~~g~~F~s~~~~~ 470 (477)
T KOG2388|consen 398 FSPLKNGGKS-STDNPSTARIALLRLHIRWIEKAGGIF-SDA--EAVVEVSPLVSYAGENLESVPSGFEFNSPLYLD 470 (477)
T ss_pred cCccccCCCC-CCCChhHHHHHHHHhhhhehhccCcEE-ecC--cceEEecceeeecccchhhccccceecCceeEe
Confidence 9999999988 799999999999999999999999999 453 368999999999999999988899999999985
No 4
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=2e-87 Score=681.90 Aligned_cols=319 Identities=54% Similarity=0.963 Sum_probs=307.8
Q ss_pred HHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCC-ccccEEEEeCC
Q psy10030 96 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGS-GCLPWFIMTSE 174 (484)
Q Consensus 96 ~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~-~~ipl~iMtS~ 174 (484)
+|+++|+++|++|++|+|+||||+|||||++.||+|+||++++++||||+++++|++++.++++++|+ +.|||+||||+
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~ 81 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSE 81 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcCh
Confidence 68999999999999999999999999999999999999999999999999999999999888776666 88999999999
Q ss_pred CCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEE
Q psy10030 175 LTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIH 254 (484)
Q Consensus 175 ~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~ 254 (484)
+||+.|++||++++|||+++++|++|.|+++||++.+|+++++++++++|+|+||||+|.+|.++|+|++|+++|++|++
T Consensus 82 ~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~ 161 (323)
T cd04193 82 ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIH 161 (323)
T ss_pred hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccc
Q psy10030 255 VYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGS 334 (484)
Q Consensus 255 v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~N 334 (484)
|+|+||+|++++||.||||+++++++++++||+|+.|+|++|++|+.||++++|||+|++++ .++..+.+|++.|+++|
T Consensus 162 v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~~~vvEysel~~~-~~~~~~~~g~l~f~~~n 240 (323)
T cd04193 162 VYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGKPQVVEYSEISDE-LAEKRDADGELQYNAGN 240 (323)
T ss_pred EEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCeEEEEEeecCCHH-HHhccCcCCcEecccch
Confidence 99999999999999999999999999999999999999999999999999999999999999 77777888999999999
Q ss_pred eeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-cccccc
Q psy10030 335 ICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLK 412 (484)
Q Consensus 335 i~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPvK 412 (484)
||+|+|+++||+++++. ...||+|+|+|++||+|.++..++|++|||+|||+||||+|++++++++++|+|+ ||+|||
T Consensus 241 i~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~~~~~~~eV~R~~~F~PvK 320 (323)
T cd04193 241 IANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFAKNFVCLEVDREEEFSPLK 320 (323)
T ss_pred HhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhCCceEEEEEChhhccccCc
Confidence 99999999999999876 3469999999999999988889999999999999999999999999999999999 999999
Q ss_pred CCC
Q psy10030 413 NSP 415 (484)
Q Consensus 413 n~~ 415 (484)
|++
T Consensus 321 n~~ 323 (323)
T cd04193 321 NAD 323 (323)
T ss_pred CCC
Confidence 984
No 5
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=2.9e-81 Score=656.16 Aligned_cols=366 Identities=21% Similarity=0.326 Sum_probs=318.4
Q ss_pred cccccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHH
Q psy10030 67 LSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQ 146 (484)
Q Consensus 67 L~ai~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~ 146 (484)
...++|+.|+|++.+.+.++.++....... ....+++ +|+|||+||||||||||+++||||+++ ++++||||++
T Consensus 41 ~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~L--~k~avlkLnGGlGTrmG~~~PKs~i~v--~~~~sfldl~ 114 (469)
T PLN02474 41 AQHIEWSKIQTPTDEVVVPYDKLAPVPEDP--EETKKLL--DKLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLI 114 (469)
T ss_pred CCeecHHHccCCchhhCcChhhccccccch--hHHHHHH--hcEEEEEecCCcccccCCCCCceeEEc--CCCCcHHHHH
Confidence 455899999999888877776664321111 1122345 699999999999999999999999987 8999999999
Q ss_pred HHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCC---cce
Q psy10030 147 AEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRD---RVA 223 (484)
Q Consensus 147 ~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~---~i~ 223 (484)
++||++++ ++|| ++|||+||||+.||++|++||++|++|+ .+|++|+|+++||++.+|+++++.+. ..+
T Consensus 115 ~~qi~~l~----~~~g-~~vPl~iMtS~~T~~~T~~~l~k~~~~~---~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~ 186 (469)
T PLN02474 115 VIQIENLN----KKYG-CNVPLLLMNSFNTHDDTQKIVEKYTNSN---IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDG 186 (469)
T ss_pred HHHHHHHH----HHcC-CCceEEEECCCchhHHHHHHHHHcCCCc---cceEEEecCceeeEecCCCCcccccCCCCcce
Confidence 99999998 5788 9999999999999999999999999875 67999999999999999999998665 566
Q ss_pred eccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECC
Q psy10030 224 RSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDG 303 (484)
Q Consensus 224 ~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g 303 (484)
|+|+||||+|.+|++||+|++|+++|++|+||+|+|| |++++||.|+||++.++++++|+|++|+.+++|+|++|+++|
T Consensus 187 ~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp~~lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~~dg 265 (469)
T PLN02474 187 WYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEG 265 (469)
T ss_pred eeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCHHHHHHHHhcCCceEEEEeecCCCCCCccEEEEECC
Confidence 9999999999999999999999999999999999999 589999999999999999999999999999999999999999
Q ss_pred eEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHhhccccchhhh--hccCCCccCCCCCeecCCCCcc
Q psy10030 304 KHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHM--ARKKIPCLDEQGISQRPNKPNG 381 (484)
Q Consensus 304 ~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~~~~Lp~~~--~~K~ip~~d~~g~~~~p~~pn~ 381 (484)
+++++||+|+|+++..++. |.++|+++|||||||+++||+++++. ..||+|+ ++|++ +|.. -
T Consensus 266 k~~lvEysqvp~e~~~~f~---~~~kf~~fNtnn~w~~L~~l~~~~~~-~~l~~~~I~n~k~~-----~g~k-------v 329 (469)
T PLN02474 266 KVQLLEIAQVPDEHVNEFK---SIEKFKIFNTNNLWVNLKAIKRLVEA-DALKMEIIPNPKEV-----DGVK-------V 329 (469)
T ss_pred EEEEEEEecCCHHHHHhhc---ccccceeeeeeeEEEEHHHHHHHhhc-CCCCceeecCCCCC-----CCee-------E
Confidence 9999999999999544443 66899999999999999999999864 4466654 44433 2322 3
Q ss_pred chhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCCCCeeEEEccce
Q psy10030 382 IKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRV 461 (484)
Q Consensus 382 ~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~ieisp~v 461 (484)
+|||++|||+|++++++.+++|+|+||+||||++ ++.++|+|+|.++++|+..+|++. .+. ...||++|.+
T Consensus 330 ~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~------dll~~rsdly~l~~~~l~~~~~~~-~~~--~p~IeL~~~f 400 (469)
T PLN02474 330 LQLETAAGAAIRFFDNAIGINVPRSRFLPVKATS------DLLLVQSDLYTLVDGFVIRNKART-NPS--NPSIELGPEF 400 (469)
T ss_pred EEeHHHHHHHHHhCCCceEEEEchhhccCCCCCC------CHHHHHHHHHHhccCeEEecCccc-CCC--CCcEEECccc
Confidence 6889999999999999999999999999999995 899999999999999999999875 221 2469999999
Q ss_pred eeecCCcccccc
Q psy10030 462 SYEGEGLEERVK 473 (484)
Q Consensus 462 sy~gE~l~~~~~ 473 (484)
++-+|.++ .++
T Consensus 401 ~~v~~f~~-rf~ 411 (469)
T PLN02474 401 KKVANFLS-RFK 411 (469)
T ss_pred ccHHhHHH-hcC
Confidence 99999887 444
No 6
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=3.8e-81 Score=626.49 Aligned_cols=294 Identities=24% Similarity=0.364 Sum_probs=274.0
Q ss_pred CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030 108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~ 187 (484)
+|+|||+||||||||||+++||||+|| ++++||||++++||++++ ++|| +.|||+||||+.||++|++||++|
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~----~~~~-~~iPl~iMtS~~T~~~T~~~l~~~ 74 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLN----KTYG-VDVPLVLMNSFNTDEDTKKILKKY 74 (300)
T ss_pred CcEEEEEecCCcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHH----HHcC-CCceEEEECCCcchHHHHHHHHHc
Confidence 699999999999999999999999999 799999999999999999 5678 999999999999999999999997
Q ss_pred CCCCCCCCcEEEEEcCCccccccCCccccc---CCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030 188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLE---TRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK 264 (484)
Q Consensus 188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~---~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~ 264 (484)
++ ++++|++|+|+++||++.+|+++++ ++++++|+|+||||+|.+|.+||+|++|+++|++|++|+|+|| |++
T Consensus 75 ~~---~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN-L~a 150 (300)
T cd00897 75 AG---VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN-LGA 150 (300)
T ss_pred CC---CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc-ccc
Confidence 75 6789999999999999999999987 7789999999999999999999999999999999999999999 589
Q ss_pred cCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHH
Q psy10030 265 VGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLEC 344 (484)
Q Consensus 265 ~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~ 344 (484)
++||.|||||+.+++++++|||+|+.|+|++|++|+++|++++|||+|+|+++..++. |...|+++|||||||+++|
T Consensus 151 ~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~---~~~~~~~~nt~n~~~~l~~ 227 (300)
T cd00897 151 TVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFK---SIKKFKIFNTNNLWVNLKA 227 (300)
T ss_pred cCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEECCEEEEEEeccCCHHHHHhhc---CcccceEEEEeEEEEEHHH
Confidence 9999999999999999999999999999999999999999999999999999444444 4468999999999999999
Q ss_pred HHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCH
Q psy10030 345 LQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNP 423 (484)
Q Consensus 345 l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~ 423 (484)
|+++++. ...||+|+|.|+|| |. ||++|||+||||+|++++++.+++|+|+||+||||++ ++
T Consensus 228 L~~~~~~~~~~lp~h~~~K~v~----------p~-~~~~qlE~~i~da~~~~~~~~~~eV~R~rF~PvKn~~------dl 290 (300)
T cd00897 228 VKRVVEENALDLEIIVNPKTVD----------GG-LNVIQLETAVGAAIKNFDNALGVNVPRSRFLPVKTTS------DL 290 (300)
T ss_pred HHHHHHhccCCCCeeecccccC----------CC-CCEEEeHhHhhhHHHhCCCcEEEEEChhhcCCCCChH------HH
Confidence 9999865 45799999999885 32 8999999999999999999999999999999999995 77
Q ss_pred HHHHHHHHH
Q psy10030 424 VTCCQAVHA 432 (484)
Q Consensus 424 ~ta~~~l~~ 432 (484)
...|+|+|.
T Consensus 291 l~~~sd~y~ 299 (300)
T cd00897 291 LLVRSDLYS 299 (300)
T ss_pred Hhhhhcccc
Confidence 888888774
No 7
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=1.4e-79 Score=617.12 Aligned_cols=295 Identities=26% Similarity=0.356 Sum_probs=266.9
Q ss_pred EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY 189 (484)
Q Consensus 110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~ 189 (484)
+|+|+||||||||||+++||||+||++++++||||++++||+++|+++.+.++ +.|||+||||+.||++|++||++|+|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~-~~IPl~IMTS~~Th~~T~~~fe~n~y 79 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEK-MEIPFVIMTSDDTHSKTLKLLEENNY 79 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCC-CceeEEEECCCchhHHHHHHHHHCCc
Confidence 48999999999999999999999999999999999999999999998866666 99999999999999999999999999
Q ss_pred CCCCCCcEEEEEcCCccccc-cCCcc--cccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030 190 FGLDPAHVIFFKQRSMPCFS-LSGEI--LLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG 266 (484)
Q Consensus 190 fgl~~~~v~~f~Q~~~P~~~-~~g~~--~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~ 266 (484)
||++++||+||+|+++||++ .+|++ .++++++++|+|+||||+|.+|+++|+|++|+++|++|++|+|+||+|++++
T Consensus 80 FGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~a 159 (315)
T cd06424 80 FGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKA 159 (315)
T ss_pred cCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhcc
Confidence 99999999999999999997 88998 5788999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCceEEEEEEccCCCcccceEEE---ECCeEEE--EEeccCCcccccccccCCC----c--ccccccce
Q psy10030 267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN---VDGKHKI--VEYSELGNCSVFETQDQTG----R--LKFNLGSI 335 (484)
Q Consensus 267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~---~~g~~~v--vEyse~~~e~~~~~~~~~g----~--~~f~~~Ni 335 (484)
||.|+|+++.++++++++||+| .|.|++|++|+ .||++++ |||||++++ +++..+.+| . ..+.+|||
T Consensus 160 dP~fiG~~~~~~~d~~~k~v~~-~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~-~~~~~~~~g~~~~~~~~s~f~gNi 237 (315)
T cd06424 160 IPAVLGVSATKSLDMNSLTVPR-KPKEAIGALCKLTKNNGKSMTINVEYNQLDPL-LRASGKDDGDVDDKTGFSPFPGNI 237 (315)
T ss_pred ChhhEEEEecCCCceEeEEEeC-CCCCceeeEEEEecCCCceEEEEEEeecCCHH-HHhcCCCCCCcccccccccCCCee
Confidence 9999999999999999999986 48999999998 5789987 999999998 877665543 1 34459999
Q ss_pred eeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcc---cccCCceEEEEEecc-cccc
Q psy10030 336 CNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDA---FPLCENLVAWEVTRD-EFSP 410 (484)
Q Consensus 336 ~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~---~~~~~~~~~~~V~R~-~FsP 410 (484)
|+|+|+++++.+.++. .+.+|+|+++| |.|++...++ +| .||||||||+ |+...++++++|+|+ +|||
T Consensus 238 ~~~~f~l~~~~~~l~~~~~~~~~~~n~k---y~d~~~~~~~--~p--~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP 310 (315)
T cd06424 238 NQLVFSLGPYMDELEKTKGAIPEFINPK---YKDATKTAFK--SP--TRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSP 310 (315)
T ss_pred eeEEEeHHHHHHHHhhccccCeeeecCC---cccCCCCeec--Cc--hHHHHHHHHHHHhhcccceeEEEEEchhhcccc
Confidence 9999999999998865 46677777555 9997644333 34 4999999999 555789999999999 9999
Q ss_pred ccCC
Q psy10030 411 LKNS 414 (484)
Q Consensus 411 vKn~ 414 (484)
|||+
T Consensus 311 ~KN~ 314 (315)
T cd06424 311 VKNN 314 (315)
T ss_pred cCCC
Confidence 9997
No 8
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=2.2e-78 Score=653.87 Aligned_cols=389 Identities=25% Similarity=0.359 Sum_probs=333.0
Q ss_pred CcccccCCCCCCccccccHHHHhhhhhhccc-----ccccccccc-CCCCcccCCCCCChhhHHHHHHhchhcccCCCEE
Q psy10030 38 GQGTRLGADYPNRIESIKIQVYIGHGYQELS-----GVQLSEVQV-FPPNCLSGVNTVDASTLGKYRELGLKLISRGDVA 111 (484)
Q Consensus 38 gqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~-----ai~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkva 111 (484)
-|-.+++..||+|+. .|+.++...+. .++|+.++| +|.....++ ++.+..+|++.|+++| ||+|
T Consensus 61 ~qL~~ld~~y~g~l~-----~~~~~~~~~l~~s~~~~~~~~~i~P~vp~~~~~~~---~~~~~~~~~~~Gl~~l--~kva 130 (615)
T PLN02830 61 EQVARLDESYPGGLA-----AYVSNAKELLADSKEGVNPFEGWTPSVPEGEVLEY---GSEEFVELEEAGLREA--GNAA 130 (615)
T ss_pred HHHHhccccccchHH-----HHHHHHHHHHhhcccCCCchhhcccCCCccccccc---cchhhhHHHHHHHHHh--CcEE
Confidence 366788899998876 33443332222 356778888 465445444 3466788999999998 6999
Q ss_pred EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCC--ccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGS--GCLPWFIMTSELTDRPTREYFERNGY 189 (484)
Q Consensus 112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~--~~ipl~iMtS~~t~e~t~~~l~~~~~ 189 (484)
||+||||||||||+++||+++|+++++++||||++++||+++|+++.++++. +.|||+||||++||++|++||++|+|
T Consensus 131 vllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~ 210 (615)
T PLN02830 131 FVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDY 210 (615)
T ss_pred EEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCc
Confidence 9999999999999999999999999999999999999999999998654432 89999999999999999999999999
Q ss_pred CCCCCCcEEEEEcCCcccccc-CCcccccC--CCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030 190 FGLDPAHVIFFKQRSMPCFSL-SGEILLET--RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG 266 (484)
Q Consensus 190 fgl~~~~v~~f~Q~~~P~~~~-~g~~~l~~--~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~ 266 (484)
||++++||+||+|+++||++. +|++++++ +++++|+|+||||+|.+|+++|+|++|+++|++|+||+|+||+|++.+
T Consensus 211 FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~A 290 (615)
T PLN02830 211 FGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKA 290 (615)
T ss_pred cCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcc
Confidence 999999999999999999985 48999987 789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCceEEEEEEccCCCcccceEEE---ECCe--EEEEEeccCCcccccccccCCCccc----cc--ccce
Q psy10030 267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN---VDGK--HKIVEYSELGNCSVFETQDQTGRLK----FN--LGSI 335 (484)
Q Consensus 267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~---~~g~--~~vvEyse~~~e~~~~~~~~~g~~~----f~--~~Ni 335 (484)
||.||||++.++++|+++||+|+ |.|++|++|+ .||+ +++|||+|++++ ++..++++|++. |+ +|||
T Consensus 291 dp~flG~~~~~~~d~~~kvv~K~-~~E~vGvi~~~~~~dG~~l~~vVEYse~~~l-l~~a~~p~g~l~~~~~~s~FPgNt 368 (615)
T PLN02830 291 IPAALGVSATKGFDMNSLAVPRK-AKEAIGAIAKLTHKDGREMVINVEYNQLDPL-LRATGHPDGDVNDETGYSPFPGNI 368 (615)
T ss_pred cHHHhHHHHhcCCceEEEEEECC-CCcccceEEEEecCCCCeeeEEEeecccCHH-HHhccCCCcccccccccccCCCCc
Confidence 99999999999999999999994 8999999998 4777 689999999998 877777665533 33 4699
Q ss_pred eeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccC---CceEEEEEecc-cccc
Q psy10030 336 CNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLC---ENLVAWEVTRD-EFSP 410 (484)
Q Consensus 336 ~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~---~~~~~~~V~R~-~FsP 410 (484)
||+|++|+.++++++. ...||.++|+| |.|.+++.+| .+ .++||+|+|+-..+ .++++..++|+ ||+|
T Consensus 369 N~L~v~L~a~~~~l~~~~~~lp~ivNpK---~~d~~~~v~q--~~--trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~P 441 (615)
T PLN02830 369 NQLILKLGPYVKELAKTGGVIEEFVNPK---YKDATKTAFK--SP--TRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSP 441 (615)
T ss_pred eeeEeeHHHHHHHHHhCCCccceeccCc---ccCCCCceee--cc--hHHHHHHHHHhhhcCcccccCceecCchheecc
Confidence 9999999999998876 67899999999 6687788887 34 59999999975433 23444444555 9999
Q ss_pred ccCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHcCcEE
Q psy10030 411 LKNSPLD--------SASDNPVTCCQAVHALHARWIETAGGVV 445 (484)
Q Consensus 411 vKn~~~~--------~~~ds~~ta~~~l~~~~~~~l~~~g~~~ 445 (484)
|||+..+ .+.+|+.+++.|+|+.++.+|+++|+.+
T Consensus 442 VKn~~s~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~~~ 484 (615)
T PLN02830 442 VKNSPADGAAKVPEGNPTHSATSGEMAIYGANCLILRKAGADV 484 (615)
T ss_pred ccCChHHhhhhcccCCCccCcchhhHHHHHHHHHHHHhcCCcc
Confidence 9999331 1579999999999999999999999987
No 9
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.3e-78 Score=634.48 Aligned_cols=339 Identities=39% Similarity=0.623 Sum_probs=284.4
Q ss_pred hhhhhc--cccccccccccCCCCcccCCCCCChhhHHHH-HHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCC
Q psy10030 61 GHGYQE--LSGVQLSEVQVFPPNCLSGVNTVDASTLGKY-RELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLP 137 (484)
Q Consensus 61 ~~~~~~--L~ai~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~ 137 (484)
.+|+.+ -..++|+.+.|++++.+.+ .+++..+ +..|+.++++||+|||+||||||||||+++|||++|| +
T Consensus 10 ~~yl~~~~~~~~~~~~i~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~v--~ 82 (420)
T PF01704_consen 10 RRYLSESKSHQIDWDKIMPPPPEEVVD-----YESLKEYEWDEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIPV--R 82 (420)
T ss_dssp HHHHHCCCCCS--GGGEEE-GTGCEEE-----HHHHHHSCHHHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSEE--E
T ss_pred HHHHHhcccCCcccccCCCCChhhcCC-----hhHhcccccccchhHHhhCCEEEEEEcCcccCccCCCCCCcceec--C
Confidence 566654 4568999988876665553 3445442 1789999999999999999999999999999999999 8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCccccc
Q psy10030 138 SGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLE 217 (484)
Q Consensus 138 ~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~ 217 (484)
+++||||++++|+++++ ++|| ++|||+||||+.||++|++||++ |||++.+ |++|+|+++||++.+|+++++
T Consensus 83 ~~~t~ldl~~~qi~~l~----~~~~-~~iPl~iMtS~~T~~~T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~~d~~~~l~ 154 (420)
T PF01704_consen 83 EGKTFLDLIVEQIEALN----KKYG-VDIPLYIMTSFNTHEDTRKFLEK--YFGLDVD-VFFFKQSKLPAIDADGKLPLE 154 (420)
T ss_dssp TTEEHHHHHHHHHHHHH----HHHT-TT-EEEEEEETTTHHHHHHHHHH--GCGSSCC-EEEEEE-EEEEEETTTTCBEE
T ss_pred CcccHHHHHHHHHHHHh----cccc-ccceEEEecCcccHHHHHHHHHH--hcCCCcc-eEEEeecCcceEeCCCccccc
Confidence 99999999999999988 5678 99999999999999999999999 7999877 999999999999999999998
Q ss_pred CCC-----cceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCC
Q psy10030 218 TRD-----RVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPG 292 (484)
Q Consensus 218 ~~~-----~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~ 292 (484)
.+. ..+|+|+||||+|.+|.+||+|++|+++|++|+||+|+|| |++++||.||||+++++++++++||+|+.|+
T Consensus 155 ~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~evv~Kt~~d 233 (420)
T PF01704_consen 155 SKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDPVFLGYMIEKNADFGMEVVPKTSPD 233 (420)
T ss_dssp ETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-HHHHHHHHHTT-SEEEEEEE-CSTT
T ss_pred cccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCHHHHHHHHhccchhheeeeecCCCC
Confidence 754 2469999999999999999999999999999999999999 7999999999999999999999999999999
Q ss_pred cccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCC
Q psy10030 293 ESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQG 371 (484)
Q Consensus 293 e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g 371 (484)
|++|++|+.+|++++|||+|+++++.+++++.++ |..+|+||+||+++||+++++. ...||+|+|+|+|||.|
T Consensus 234 ek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~---~~~FntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d--- 307 (420)
T PF01704_consen 234 EKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKG---FLLFNTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVD--- 307 (420)
T ss_dssp TSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTT---SBEEEEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEEC---
T ss_pred CceeEEEEeCCccEEEEeccCCHHHHHhhhcccc---ceEEEeceeeEEHHHHHHHHHhccccCccEEcchhccccc---
Confidence 9999999999999999999999998888888766 4566888889999999999876 67899999999999998
Q ss_pred CeecCCCCccchhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCHHHHHHHHHH
Q psy10030 372 ISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHA 432 (484)
Q Consensus 372 ~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~~ta~~~l~~ 432 (484)
..++++|||++|++.+.++++..+++|+|+||+||||++ ++...++++|.
T Consensus 308 -----~~~~~~q~Et~i~~~i~~f~~~~~v~V~R~rF~PvKn~~------dLl~~~Sd~y~ 357 (420)
T PF01704_consen 308 -----NGIKVIQFETAIGFAIFQFDNSFAVEVPRDRFAPVKNTS------DLLLVRSDLYD 357 (420)
T ss_dssp -----TEEEEEEEECGGGGGGGGCTSEEEEEE-GGG--B-SSHH------HHHHHHSTTEE
T ss_pred -----CCccEEeehhhhhchHhhccCcEEEEEcHHHcCCccccC------cceeeccceec
Confidence 246778999999999999999999999999999999996 44444544443
No 10
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-72 Score=580.64 Aligned_cols=388 Identities=35% Similarity=0.478 Sum_probs=340.9
Q ss_pred ccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHH
Q psy10030 70 VQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEK 149 (484)
Q Consensus 70 i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~ 149 (484)
.+|+.+.|+.++.+..+.+... +++ |+..+..||+|||+||||||||||+++|||+++|+ +|+||||++++|
T Consensus 72 ~~~~ki~~~~~d~~~~~~~~~~----~~~--~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~--~gks~~dl~~~q 143 (472)
T COG4284 72 QEWDKIRPPNPDDVVDYEKKIL----EGW--GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQ 143 (472)
T ss_pred eeecccCCCChhhhccchhhcc----chh--hhhhhhcCceEEEEecCCcccccccCCCceeEEec--CCCcHHHHHHHH
Confidence 5777888876666766543221 122 78888899999999999999999999999999994 799999999999
Q ss_pred HHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCcc-ccccCCcccccCCCc-ceeccC
Q psy10030 150 IDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMP-CFSLSGEILLETRDR-VARSPD 227 (484)
Q Consensus 150 i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P-~~~~~g~~~l~~~~~-i~~~P~ 227 (484)
|+.++ .+|+ ++|||+|||| .|++.|..||+.++|||+++.+|+||+|+.+| +++.+|+++....++ ++|+|+
T Consensus 144 Ik~ln----~~~~-~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~ 217 (472)
T COG4284 144 IKYLN----RQYN-VDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPP 217 (472)
T ss_pred HHHHH----HHhC-CCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCC
Confidence 99998 5677 9999999999 99999999999999999999999999999999 577889988877777 999999
Q ss_pred CCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEE
Q psy10030 228 GHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKI 307 (484)
Q Consensus 228 G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~v 307 (484)
||||+|.+|.+||++++|.++|++|++|+|||| |++++||.++|+++.++++++||++.|+.|+|+||+++..+|++++
T Consensus 218 GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~~rl 296 (472)
T COG4284 218 GNGDLFKALKSSGILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTYDGKLRL 296 (472)
T ss_pred CCccHHHHHHhcchHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEeCCceEE
Confidence 999999999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcccccccccCCCcccccccc-eeeeeecHHHHHHHhhccccchhhhhccCCCccCCCCCeecCCCCccchhhh
Q psy10030 308 VEYSELGNCSVFETQDQTGRLKFNLGS-ICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEK 386 (484)
Q Consensus 308 vEyse~~~e~~~~~~~~~g~~~f~~~N-i~~~~~~l~~l~~~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~ 386 (484)
+||+|++.+ .++....+|.+.+..+| |++|++++++|.+.. ...||+|.|.|++|+.|...+.-+|..||+++||.
T Consensus 297 lEysev~~~-~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~~--~l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe~ 373 (472)
T COG4284 297 LEYSEVPNE-HREEFTSDGKLKYFNTNNIWLHLFSVKFLKEAA--YLNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFEN 373 (472)
T ss_pred EEEecCChh-HhhhhccccceeeeccccceeehhHHHHHHhhh--ccCCcchhhhcccCccccceeeccccccchhhccc
Confidence 999999998 55544566767766666 888888888887776 47899999999999998556677778899999996
Q ss_pred -hh-hcccccC--CceEEEEEecc-ccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcEEEcCCCCCeeEEEccce
Q psy10030 387 -FL-FDAFPLC--ENLVAWEVTRD-EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGNTVCEIAPRV 461 (484)
Q Consensus 387 -~i-~D~~~~~--~~~~~~~V~R~-~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~ieisp~v 461 (484)
|| ||+|.+- ++++++.|||. ||+|+||-.+. ..++++++..++-. +..|++..|.++ .+ ....|.++..
T Consensus 374 ~FI~fDlF~~~s~~~~~~~~vpR~~~f~Plkn~~~~-~~~~~~~~~~~~~~-~~~~~e~~~~~i-s~---nv~~~~~~~l 447 (472)
T COG4284 374 EFIPFDLFLYKSDENGGLLLVPRFGEFSPLKNLEGS-HFDNVETFTCGIPR-IPLILELEGLTI-SG---NVLFGRNVTL 447 (472)
T ss_pred cccceeeeEEEecCCCceEeccccCCCCchhhccCC-CCCcHHhhhccccc-ccchhhhcccee-cC---ceEeeeccee
Confidence 99 9999988 89999999999 89999999977 66899999888644 445999999988 33 4689999999
Q ss_pred eeecCCccccccCcccCCCc
Q psy10030 462 SYEGEGLEERVKGKVLQTPL 481 (484)
Q Consensus 462 sy~gE~l~~~~~~~~~~~p~ 481 (484)
+|+||++.-.++++.|-.-.
T Consensus 448 k~~~e~~~l~~~~~s~~e~~ 467 (472)
T COG4284 448 KYASENTSLCIPNKSFLENV 467 (472)
T ss_pred eecCCCceEeccCCeeeeee
Confidence 99999998547888665533
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=4.9e-65 Score=505.86 Aligned_cols=258 Identities=33% Similarity=0.462 Sum_probs=242.0
Q ss_pred EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY 189 (484)
Q Consensus 110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~ 189 (484)
+|+|+||||+|||||++.||+|+||++++|+||||+++++|++++.++. ++ +.||++||||++||+.|++||++|+
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~--~~-~~Ip~~imts~~t~~~t~~~l~~~~- 76 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDL--YS-CKIPEQLMNSKYTHEKTQCYFEKIN- 76 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhh--cC-CCCCEEEEcCchhHHHHHHHHHHcC-
Confidence 5899999999999999999999999999999999999999999986553 24 7799999999999999999999987
Q ss_pred CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHH
Q psy10030 190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPT 269 (484)
Q Consensus 190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~ 269 (484)
++++++++|+|+++||++.+|...++++++++|+|+||||+|.+|..+|+|++|+++|++|++|+|+||+|++++||.
T Consensus 77 --~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~ 154 (266)
T cd04180 77 --QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL 154 (266)
T ss_pred --CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH
Confidence 567899999999999999999988888899999999999999999999999999999999999999999999888999
Q ss_pred HHHHHHHcCCceEEEEEEccCCCcccceEEEEC-CeEEEEEeccCCcccccccc------cCCCcccccccceeeeeecH
Q psy10030 270 FLGYCVEQGAHCGVKVVEKITPGESLGVLCNVD-GKHKIVEYSELGNCSVFETQ------DQTGRLKFNLGSICNHYFSL 342 (484)
Q Consensus 270 ~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~-g~~~vvEyse~~~e~~~~~~------~~~g~~~f~~~Ni~~~~~~l 342 (484)
++|+++.++++++++|++|+.++|++|++|..+ |++++|||+|++++ .++.+ +.+|.+.|+++|||||||+|
T Consensus 155 ~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~~~g~~~~vEyse~~~~-~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l 233 (266)
T cd04180 155 FIGIAIQNRKAINQKVVPKTRNEESGGYRIANINGRVQLLEYDQIKKL-LKQKMVNNQIPKDIDDAPFFLFNTNNLINFL 233 (266)
T ss_pred HHHHHHHcCCCEEEEEEECCCCCCeEEEEEEecCCCEEEEEeccCCHH-HHhccccccCcCCCCceeeccceEEEEEEEH
Confidence 999999999999999999999999999999988 99999999999998 65543 34678999999999999999
Q ss_pred HHHHHHhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-ccccccC
Q psy10030 343 ECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKN 413 (484)
Q Consensus 343 ~~l~~~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPvKn 413 (484)
+||+++++ |+|++++++.+++|+|+ ||+||||
T Consensus 234 ~~l~~~~~---------------------------------------d~~~~~~~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 234 VEFKDRVD---------------------------------------DIIEFTDDIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred HHHHHHHH---------------------------------------HHHhccCceEEEEeCchhccccCCC
Confidence 99999872 88999999999999999 9999998
No 12
>KOG2638|consensus
Probab=100.00 E-value=1.1e-65 Score=515.57 Aligned_cols=339 Identities=22% Similarity=0.344 Sum_probs=306.5
Q ss_pred hhhhhcc-ccccccccccCCCCcccCCCCCChhhHHHHHHhchhcccCCCEEEEEEcCCCCccccccCCCccccccCCCC
Q psy10030 61 GHGYQEL-SGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG 139 (484)
Q Consensus 61 ~~~~~~L-~ai~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~ 139 (484)
.||+.+- +.++|+.|+|+|++.+.++.++... +.+-..+. |+||++|+||+||.|||.+||++++| ++|
T Consensus 62 ~RyL~~~~~~~~wdkI~~p~~d~vv~y~~i~~~------~~~~~~L~--KLavlKLNGGlGttmGc~gPKS~ieV--R~g 131 (498)
T KOG2638|consen 62 SRYLREKAPTIDWDKIRPPPEDAVVPYDDIKNV------ELSKSLLN--KLAVLKLNGGLGTTMGCKGPKSVIEV--RDG 131 (498)
T ss_pred HHHHhccCCccchhhccCCChhhccccccccch------hhHHHhhh--heEEEEecCCcCCccccCCCceeEEE--cCC
Confidence 6777654 7799999999999999988776654 33335554 99999999999999999999999888 999
Q ss_pred CcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccC-
Q psy10030 140 KSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLET- 218 (484)
Q Consensus 140 ~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~- 218 (484)
.|||++.++||+.|+ ++|+ +++|+++|+|++|+++|.+++++|..+. .+|++|.|+++|+++.|..++++.
T Consensus 132 ~tFLDL~V~QIe~LN----~~Y~-~dVPlvLMNSfnTdedT~kil~ky~~~k---v~i~TF~QS~~PRi~~etlLPv~~~ 203 (498)
T KOG2638|consen 132 LTFLDLTVRQIENLN----KTYN-VDVPLVLMNSFNTDEDTQKILKKYAGSK---VDIKTFNQSKYPRIDKETLLPVPKL 203 (498)
T ss_pred CchhHHHHHHHHHHH----hhcC-CCCCEEEecccccchHHHHHHHHhcCCc---eeEEEeccccCCccccccccCCCcc
Confidence 999999999999988 7898 9999999999999999999999987653 669999999999999999988864
Q ss_pred ---CCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHHHHHHHcCCceEEEEEEccCCCccc
Q psy10030 219 ---RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESL 295 (484)
Q Consensus 219 ---~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~ 295 (484)
...-+|+|+|||++|.+|+.||+||+|+++|+||+||+|+||+ ++++|..+|.+++.++.++.|+|++|+.++-|+
T Consensus 204 ~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNL-GAtvDL~ILn~~i~~~~ey~MEvTdKT~aDvKg 282 (498)
T KOG2638|consen 204 EADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNL-GATVDLNILNHVINNNIEYLMEVTDKTRADVKG 282 (498)
T ss_pred cCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccc-cceeeHHHHHHHhcCCCceEEEecccchhhccc
Confidence 2457999999999999999999999999999999999999998 689999999999999999999999999999999
Q ss_pred ceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHhhc-cccchhhhhccCCCccCCCCCee
Q psy10030 296 GVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQ 374 (484)
Q Consensus 296 G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~~~-~~~Lp~~~~~K~ip~~d~~g~~~ 374 (484)
|+++.++|+.+++||+|+|++|..++++. .+|+++||||+|++|++++++++. ...|++++|+|++.+ +
T Consensus 283 GtLi~y~G~lrlLEiaQVP~ehv~eFkS~---kkFkifNTNNlWinLkavKrlve~~~l~meIi~N~kti~~----~--- 352 (498)
T KOG2638|consen 283 GTLIQYEGKLRLLEIAQVPKEHVDEFKSI---KKFKIFNTNNLWINLKAVKKLVEENALNMEIIVNPKTIDR----G--- 352 (498)
T ss_pred ceEEeecCEEEEEEeccCChhHhhhhccc---eeEEEeccCCeEEehHHHHHHhhcCcccceeecChhhccC----C---
Confidence 99999999999999999999999999887 589999999999999999999987 778999999998854 2
Q ss_pred cCCCCccchhhhhhhcccccCCceEEEEEeccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy10030 375 RPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWI 438 (484)
Q Consensus 375 ~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~~FsPvKn~~~~~~~ds~~ta~~~l~~~~~~~l 438 (484)
-+.+|||+.+++++++|++..++.|+|+||.|||+++ ++...+++||.+...-|
T Consensus 353 ----~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~s------DLlLv~S~Ly~ld~Gsl 406 (498)
T KOG2638|consen 353 ----IEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCS------DLLLVMSNLYDLDNGSL 406 (498)
T ss_pred ----ceEEEEhhhhhHHHHhCCCceeeeccccccccccccc------cceeeecceeeccCCeE
Confidence 2457999999999999999999999999999999996 77888888888654433
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=3.5e-17 Score=167.72 Aligned_cols=252 Identities=19% Similarity=0.199 Sum_probs=198.8
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
.+.+|+||.|+||||.++.||.+.+| +|||++++.++....|. ..-++..-+|..+.+++.+.+..
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~v---aGkpMl~hVi~~a~~l~-----------~~~i~vVvGh~ae~V~~~~~~~~ 67 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPV---AGKPMLEHVIDAARALG-----------PDDIVVVVGHGAEQVREALAERD 67 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhc---cCccHHHHHHHHHhhcC-----------cceEEEEEcCCHHHHHHHhcccc
Confidence 47899999999999999999999999 99999999999887654 33334444999999999997642
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCe-EEEEEeCCCCccccCC
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK-HIHVYCVDNILVKVGD 267 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~-~i~v~~vDN~l~~~~D 267 (484)
++.|+.|.. |.|+|.+..+... .+..+.+ .++|.++|.+|....-
T Consensus 68 -------~v~~v~Q~e---------------------qlGTgHAV~~a~~------~l~~~~~g~vLVl~GD~PLit~~T 113 (460)
T COG1207 68 -------DVEFVLQEE---------------------QLGTGHAVLQALP------ALADDYDGDVLVLYGDVPLITAET 113 (460)
T ss_pred -------CceEEEecc---------------------cCChHHHHHhhhh------hhhcCCCCcEEEEeCCcccCCHHH
Confidence 477888876 7999999887643 3445555 8999999999964322
Q ss_pred HH-HHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCe-EEEEEeccCCcccccccccCCCcccccccceeeeeecHHH
Q psy10030 268 PT-FLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGK-HKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLEC 344 (484)
Q Consensus 268 p~-~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~-~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~ 344 (484)
.. ++.++...++.++..++.-.+|.. +|.|++. +|+ .++||..+.+++ .+ ..+.-|+..++|+-++
T Consensus 114 L~~L~~~~~~~~~~~tvLt~~~~dP~G-YGRIvr~~~g~V~~IVE~KDA~~e-ek---------~I~eiNtGiy~f~~~~ 182 (460)
T COG1207 114 LEELLAAHPAHGAAATVLTAELDDPTG-YGRIVRDGNGEVTAIVEEKDASEE-EK---------QIKEINTGIYAFDGAA 182 (460)
T ss_pred HHHHHHhhhhcCCceEEEEEEcCCCCC-cceEEEcCCCcEEEEEEcCCCCHH-Hh---------cCcEEeeeEEEEcHHH
Confidence 22 677777788999999999998874 6888877 555 679999999988 43 3346789999999999
Q ss_pred HHHHhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCC----ceEEEEEecc-ccccccCCCCCCC
Q psy10030 345 LQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCE----NLVAWEVTRD-EFSPLKNSPLDSA 419 (484)
Q Consensus 345 l~~~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~----~~~~~~V~R~-~FsPvKn~~~~~~ 419 (484)
|.+.+.. |. .|-.|=|.++.|++.++. ++..+.++.. |+..|+|..
T Consensus 183 L~~~L~~---l~----------------------nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~---- 233 (460)
T COG1207 183 LLRALPK---LS----------------------NNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV---- 233 (460)
T ss_pred HHHHHHH---hc----------------------cccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH----
Confidence 9887622 21 112488999999998883 6888888877 999998884
Q ss_pred CCCHHHHHHHHHHHHHHHHHHcCcEEEcCCC
Q psy10030 420 SDNPVTCCQAVHALHARWIETAGGVVVADET 450 (484)
Q Consensus 420 ~ds~~ta~~~l~~~~~~~l~~~g~~~~~~~~ 450 (484)
.++.++..|.++.++.++.+|+.+..|++
T Consensus 234 --qLa~~e~~~q~r~~~~~m~~GVtl~dP~t 262 (460)
T COG1207 234 --QLAEAERIMQRRIAEKLMLAGVTLIDPAT 262 (460)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCcEEeCCCe
Confidence 78888999999888889999999955554
No 14
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.38 E-value=1.6e-11 Score=124.09 Aligned_cols=180 Identities=19% Similarity=0.223 Sum_probs=125.6
Q ss_pred CEEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEE-EeCCCCchHHHHHH
Q psy10030 109 DVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFI-MTSELTDRPTREYF 184 (484)
Q Consensus 109 kvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~i-MtS~~t~e~t~~~l 184 (484)
.+.+|+||||.||||.. +.||+|+|| .+||++++.++.+.. .| +.-++ ++..+..+.++++|
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv---~gkPmI~~~l~~l~~--------aG---i~~I~ii~~~~~~~~~~~~l 68 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPI---YDKPMIYYPLSTLML--------AG---IRDILIISTPQDTPRFQQLL 68 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEecCCchHHHHHHH
Confidence 47799999999999976 889999999 899999999888853 34 55554 56666677889999
Q ss_pred HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030 185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK 264 (484)
Q Consensus 185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~ 264 (484)
.+...||++ +.+..|. .|.|+|+.+....+ +. +-+.+++.++||++..
T Consensus 69 ~~g~~~g~~---i~y~~q~---------------------~~~Gta~Al~~a~~------~i--~~~~~~lv~gD~i~~~ 116 (292)
T PRK15480 69 GDGSQWGLN---LQYKVQP---------------------SPDGLAQAFIIGEE------FI--GGDDCALVLGDNIFYG 116 (292)
T ss_pred cCccccCce---eEEEECC---------------------CCCCHHHHHHHHHH------Hh--CCCCEEEEECCeeeec
Confidence 887778864 4444443 38899999876432 23 2233677789998743
Q ss_pred cCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030 265 VGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE 343 (484)
Q Consensus 265 ~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~ 343 (484)
..-..++..|..++.++++-+++..+| ++.|++... +|+ ++++.|-|.. - .-+..|++.++|+-+
T Consensus 117 ~~l~~ll~~~~~~~~~~tv~~~~v~~p-~~yGvv~~d~~g~--v~~i~EKP~~-p----------~s~~a~~GiY~~~~~ 182 (292)
T PRK15480 117 HDLPKLMEAAVNKESGATVFAYHVNDP-ERYGVVEFDQNGT--AISLEEKPLQ-P----------KSNYAVTGLYFYDND 182 (292)
T ss_pred cCHHHHHHHHHhCCCCeEEEEEEcCCc-ccCcEEEECCCCc--EEEEEECCCC-C----------CCCEEEEEEEEEChH
Confidence 333457888877788887777766655 588998765 454 3444443322 0 113578999999987
Q ss_pred HHHHH
Q psy10030 344 CLQRM 348 (484)
Q Consensus 344 ~l~~~ 348 (484)
.++.+
T Consensus 183 v~~~~ 187 (292)
T PRK15480 183 VVEMA 187 (292)
T ss_pred HHHHH
Confidence 65543
No 15
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.36 E-value=2.7e-11 Score=122.81 Aligned_cols=185 Identities=17% Similarity=0.194 Sum_probs=122.9
Q ss_pred CEEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030 109 DVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE 185 (484)
Q Consensus 109 kvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~ 185 (484)
.+.+|+||||.||||.. ..||+|+|| .|+|+++++++.+.. .| +.-+++...+..+.+.+||.
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV---~gkPiI~~vl~~l~~--------~G---i~~ivivv~~~~~~i~~~~~ 68 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA--------AG---IKEIVLVTHASKNAVENHFD 68 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEecCChHHHHHHHh
Confidence 47899999999999984 789999999 899999999998863 35 77778888889999999996
Q ss_pred HcCC----------------------CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHH
Q psy10030 186 RNGY----------------------FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILD 243 (484)
Q Consensus 186 ~~~~----------------------fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~ 243 (484)
.+.. +++ ++.+ ..+..|.|+||.......
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~---------------------~~q~~~lGtg~Av~~a~~----- 119 (297)
T TIGR01105 69 TSYELESLLEQRVKRQLLAEVQSICPPGV---TIMN---------------------VRQAQPLGLGHSILCARP----- 119 (297)
T ss_pred chHHHHHHHHHhcchhhhhhhhhcCCCCc---eEEE---------------------eeCCCcCchHHHHHHHHH-----
Confidence 5210 111 1222 234458999998776543
Q ss_pred HHHHcCCeEEEEEeCCCCcccc------CC-HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-----CCe-EEEEEe
Q psy10030 244 TMHTRGIKHIHVYCVDNILVKV------GD-PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-----DGK-HKIVEY 310 (484)
Q Consensus 244 ~l~~~G~~~i~v~~vDN~l~~~------~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-----~g~-~~vvEy 310 (484)
+. +-+.++|.++|++.-.. .| -.++.+|.+++..+ +-+++......++|++... +|+ .+|+|+
T Consensus 120 -~l--~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~-~~~~~~~~~~~~yGvv~~~~~~d~~g~v~~I~~~ 195 (297)
T TIGR01105 120 -VV--GDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQ-VLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEF 195 (297)
T ss_pred -Hh--CCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcE-EEEEEcCCCCccceEEEecccccCCCCeeeEeEE
Confidence 22 33557888899874110 11 14666666666655 3333432224688999862 355 367888
Q ss_pred ccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030 311 SELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM 348 (484)
Q Consensus 311 se~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~ 348 (484)
.|-|.. -.+. .-+..|++.++|+-+.+..+
T Consensus 196 ~EKP~~-~~~~-------~s~~~~~GiYi~~~~i~~~l 225 (297)
T TIGR01105 196 IEKPDQ-PQTL-------DSDLMAVGRYVLSADIWAEL 225 (297)
T ss_pred EECCCC-cccC-------CcCEEEEEEEEECHHHHHHH
Confidence 776532 1111 12467899999998866654
No 16
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.2e-11 Score=125.35 Aligned_cols=179 Identities=25% Similarity=0.350 Sum_probs=133.2
Q ss_pred EEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030 110 VAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER 186 (484)
Q Consensus 110 vavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~ 186 (484)
+-+|+||||.||||.. +.||+|+|| .|+|+++++++.+.+ +| +--++++..+..+.+.++|++
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI---~gkPii~~~l~~L~~--------~G---v~eivi~~~y~~~~i~~~~~d 67 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPI---AGKPLIEYVLEALAA--------AG---VEEIVLVVGYLGEQIEEYFGD 67 (358)
T ss_pred ceEEEEeCCccccccccccCCCccccee---CCccHHHHHHHHHHH--------CC---CcEEEEEeccchHHHHHHHhc
Confidence 5689999999999875 899999999 799999999998853 56 888999999999999999998
Q ss_pred cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030 187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG 266 (484)
Q Consensus 187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~ 266 (484)
...+|++ |. +..+..|.|+||.++...+. .+.+-+++.|+|++. ..
T Consensus 68 ~~~~~~~---I~---------------------y~~e~~~lGTag~l~~a~~~--------l~~~~f~v~~GDv~~--~~ 113 (358)
T COG1208 68 GEGLGVR---IT---------------------YVVEKEPLGTAGALKNALDL--------LGGDDFLVLNGDVLT--DL 113 (358)
T ss_pred ccccCCc---eE---------------------EEecCCcCccHHHHHHHHHh--------cCCCcEEEEECCeee--cc
Confidence 7666654 43 33444589999999876532 233889999999985 34
Q ss_pred C-HHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030 267 D-PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL 345 (484)
Q Consensus 267 D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l 345 (484)
| -.++.+|..+++..++..++...+ ...|++...++.-.++++.+-|.. . .. .=...|+..++|+-+.+
T Consensus 114 dl~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~~~~~~~~v~~f~ekp~~-~--~~------~~~~in~Giyi~~~~v~ 183 (358)
T COG1208 114 DLSELLEFHKKKGALATIALTRVLDP-SEFGVVETDDGDGRVVEFREKPGP-E--EP------PSNLINAGIYIFDPEVF 183 (358)
T ss_pred CHHHHHHHHHhccCccEEEEEecCCC-CcCceEEecCCCceEEEEEecCCC-C--CC------CCceEEeEEEEECHHHh
Confidence 4 347888888877777777766666 578887766333556666666531 0 00 01356788888887766
Q ss_pred H
Q psy10030 346 Q 346 (484)
Q Consensus 346 ~ 346 (484)
+
T Consensus 184 ~ 184 (358)
T COG1208 184 D 184 (358)
T ss_pred h
Confidence 5
No 17
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.31 E-value=5.5e-11 Score=119.97 Aligned_cols=176 Identities=19% Similarity=0.218 Sum_probs=122.0
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEE-EEeCCCCchHHHHHHHHc
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF-IMTSELTDRPTREYFERN 187 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~-iMtS~~t~e~t~~~l~~~ 187 (484)
+|+||||.||||.. ..||+|+|| .++|++++.++.+.. .| |.-+ |++..+..+.++++|.+.
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv---~gkPmI~~~L~~l~~--------aG---i~~I~iv~~~~~~~~~~~~lg~g 67 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLML--------AG---IRDILIISTPQDTPRFQQLLGDG 67 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEE---CCEEhHHHHHHHHHH--------CC---CCEEEEEecCCcHHHHHHHhccc
Confidence 58999999999975 899999999 899999999888853 34 5555 466667778889999877
Q ss_pred CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030 188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD 267 (484)
Q Consensus 188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D 267 (484)
..||++ +.+..|. .|.|+|+.+..... +. +.+.++++++||++....-
T Consensus 68 ~~~g~~---i~~~~q~---------------------~~~Gta~al~~a~~------~l--~~~~~~li~gD~i~~~~~l 115 (286)
T TIGR01207 68 SQWGVN---LSYAVQP---------------------SPDGLAQAFIIGED------FI--GGDPSALVLGDNIFYGHDL 115 (286)
T ss_pred cccCce---EEEEEcc---------------------CCCCHHHHHHHHHH------Hh--CCCCEEEEECCEeccccCH
Confidence 677764 4444442 47899998876442 22 2345667789998643222
Q ss_pred HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030 268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346 (484)
Q Consensus 268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~ 346 (484)
..++-.|.+.+.++++-+.+..+| +++|++... +|+ |+++.|-|.. - .-+..|++.++|+-+.++
T Consensus 116 ~~ll~~~~~~~~~~ti~~~~v~~p-~~yGvv~~d~~g~--V~~i~EKp~~-~----------~s~~~~~GiYi~~~~i~~ 181 (286)
T TIGR01207 116 SDLLKRAAARESGATVFAYQVSDP-ERYGVVEFDSNGR--AISIEEKPAQ-P----------KSNYAVTGLYFYDNRVVE 181 (286)
T ss_pred HHHHHHHHhcCCCcEEEEEEccCH-HHCceEEECCCCe--EEEEEECCCC-C----------CCCEEEEEEEEEchHHHH
Confidence 456777777788888777776655 578998764 443 4444443322 0 113578899999977644
Q ss_pred H
Q psy10030 347 R 347 (484)
Q Consensus 347 ~ 347 (484)
.
T Consensus 182 ~ 182 (286)
T TIGR01207 182 I 182 (286)
T ss_pred H
Confidence 3
No 18
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.30 E-value=6.9e-10 Score=117.46 Aligned_cols=242 Identities=20% Similarity=0.228 Sum_probs=151.4
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
++.+||||||.||||+...||.|+|+ .|+|++++.++.++.. . -..+|++ .+..+.+.+++.+.
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi---~gkPli~~~i~~l~~~--------~---~~i~Ivv-~~~~~~i~~~~~~~- 65 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTI---CGKPMLFYILKEAFAI--------S---DDVHVVL-HHQKERIKEAVLEY- 65 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEE---CCccHHHHHHHHHHHc--------C---CcEEEEE-CCCHHHHHHHHHhc-
Confidence 35689999999999999999999999 8999999999988641 1 2344444 56688888888763
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
++ .+.+..|+. ..+.|+|+.+..+. ...+++++.+.|+++ .++
T Consensus 66 -~~----~v~~~~~~~-------------------~~~~gt~~al~~~~----------~~~d~vlv~~gD~p~---~~~ 108 (430)
T PRK14359 66 -FP----GVIFHTQDL-------------------ENYPGTGGALMGIE----------PKHERVLILNGDMPL---VEK 108 (430)
T ss_pred -CC----ceEEEEecC-------------------ccCCCcHHHHhhcc----------cCCCeEEEEECCccC---CCH
Confidence 21 244444431 23568888776521 125789999999986 366
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeE-EEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030 269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKH-KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR 347 (484)
Q Consensus 269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~-~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~ 347 (484)
..+..+.+.++++++.+++..+|. ..|++...+|+. .++|......+ . ......|++.++|+-+++++
T Consensus 109 ~~l~~l~~~~~~~~v~~~~~~~~~-~~g~v~~d~g~v~~i~e~~~~~~~-~---------~~~~~~~~Giyif~~~~l~~ 177 (430)
T PRK14359 109 DELEKLLENDADIVMSVFHLADPK-GYGRVVIENGQVKKIVEQKDANEE-E---------LKIKSVNAGVYLFDRKLLEE 177 (430)
T ss_pred HHHHHHHhCCCCEEEEEEEcCCCc-cCcEEEEcCCeEEEEEECCCCCcc-c---------ccceEEEeEEEEEEHHHHHH
Confidence 777777777888877777766554 478776556643 34444322221 0 11235688899999999887
Q ss_pred HhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccC----CceEEEEEeccccccccCCCCCCCCCCH
Q psy10030 348 MVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLC----ENLVAWEVTRDEFSPLKNSPLDSASDNP 423 (484)
Q Consensus 348 ~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~----~~~~~~~V~R~~FsPvKn~~~~~~~ds~ 423 (484)
+.+. +.... .+-|.++.|+++.. .++.+++++...+.-+.+. ++.
T Consensus 178 ~~~~---~~~~~----------------------~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~------~dl 226 (430)
T PRK14359 178 YLPL---LKNQN----------------------AQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSK------FEL 226 (430)
T ss_pred HHHh---cCccc----------------------ccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCH------HHH
Confidence 6532 10000 01122333443322 2466666654345444222 466
Q ss_pred HHHHHHHHHHHHHHHHHcCcEE
Q psy10030 424 VTCCQAVHALHARWIETAGGVV 445 (484)
Q Consensus 424 ~ta~~~l~~~~~~~l~~~g~~~ 445 (484)
..|+..|....++-+...|+.+
T Consensus 227 ~~a~~~l~~~~~~~~~~~g~~~ 248 (430)
T PRK14359 227 AKAEEIMQERIKKNAMKQGVIM 248 (430)
T ss_pred HHHHHHHHHHHHHHHHHcCCEE
Confidence 7777666655555555677665
No 19
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=99.28 E-value=2e-12 Score=137.76 Aligned_cols=92 Identities=27% Similarity=0.383 Sum_probs=69.1
Q ss_pred CCCCCChhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccccccccc----------
Q psy10030 5 GVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSE---------- 74 (484)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~---------- 74 (484)
+....+++...+|++.|+++|++|+|||++||||||||||.++||||++|+++ .+++++++.+.+..+
T Consensus 92 ~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglp--s~kslfql~~e~I~~lq~la~~~~~ 169 (493)
T PLN02435 92 TVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLP--SGKSLFQLQAERILCVQRLAAQASS 169 (493)
T ss_pred chhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCC--CCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 33334557778999999999999999999999999999999999999999997 567666665533322
Q ss_pred -----cccCCCCcccCCCCCChhhHHHHHH
Q psy10030 75 -----VQVFPPNCLSGVNTVDASTLGKYRE 99 (484)
Q Consensus 75 -----~~p~~~~~~~~~~~~~~~~~~~~~~ 99 (484)
-.++|+..|.|..+ ..+...-+++
T Consensus 170 ~~~~~~~~IPl~IMTS~~T-~~~T~~ff~~ 198 (493)
T PLN02435 170 EGPGRPVTIHWYIMTSPFT-DEATRKFFES 198 (493)
T ss_pred cccCCCCceeEEEeCCcch-hHHHHHHHHh
Confidence 23578888888764 2333344443
No 20
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.27 E-value=5.4e-10 Score=119.32 Aligned_cols=181 Identities=18% Similarity=0.265 Sum_probs=114.7
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
.+.+|+||||.||||+.+.||.|+|+ .|+|++++.++.+.. .+ +.-+++...+..+.+.+++.+.
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i---~gkpli~~~l~~l~~--------~~---~~~iivv~~~~~~~i~~~~~~~- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTL---LGEPMLRFVYRALRP--------LF---GDNVWTVVGHRADMVRAAFPDE- 69 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceeccc---CCCcHHHHHHHHHHh--------cC---CCcEEEEECCCHHHHHHhcccc-
Confidence 58899999999999998899999999 899999999887753 23 4445444456667776665431
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
++.+..|+ .|.|+|+.+... ++.+.+.+.++++|+++|+++. ++
T Consensus 70 -------~~~~v~~~---------------------~~~Gt~~al~~a-----~~~l~~~~~d~vlv~~gD~P~i---~~ 113 (456)
T PRK14356 70 -------DARFVLQE---------------------QQLGTGHALQCA-----WPSLTAAGLDRVLVVNGDTPLV---TT 113 (456)
T ss_pred -------CceEEEcC---------------------CCCCcHHHHHHH-----HHHHhhcCCCcEEEEeCCcccC---CH
Confidence 12222221 257887755543 2344444678999999999863 33
Q ss_pred HHHHHHHH--cCCceEEEEEEccCCCcccceEEEECCeE-EEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030 269 TFLGYCVE--QGAHCGVKVVEKITPGESLGVLCNVDGKH-KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL 345 (484)
Q Consensus 269 ~~lg~~~~--~~~~~~~~vv~k~~~~e~~G~l~~~~g~~-~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l 345 (484)
..+-.+.+ .+.+.++.+.+..+|. .+|++...+|+. .++|-...++. ... + ..+..|++.++|+-+++
T Consensus 114 ~~i~~li~~~~~~~~~l~~~~~~~~~-~~g~v~~~~g~V~~~~ek~~~~~~-~~~---~----~~~~~~~GiY~f~~~~l 184 (456)
T PRK14356 114 DTIDDFLKEAAGADLAFMTLTLPDPG-AYGRVVRRNGHVAAIVEAKDYDEA-LHG---P----ETGEVNAGIYYLRLDAV 184 (456)
T ss_pred HHHHHHHHHHhcCCEEEEEEEcCCCC-CceEEEEcCCeEEEEEECCCCChH-Hhh---h----hcCeEEEEEEEEEHHHH
Confidence 33333222 2666766666666554 678887656653 23443333221 000 0 11346888999999988
Q ss_pred HHHh
Q psy10030 346 QRMV 349 (484)
Q Consensus 346 ~~~~ 349 (484)
+++.
T Consensus 185 ~~ll 188 (456)
T PRK14356 185 ESLL 188 (456)
T ss_pred HHHH
Confidence 7765
No 21
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.27 E-value=1.6e-10 Score=120.61 Aligned_cols=195 Identities=19% Similarity=0.244 Sum_probs=127.1
Q ss_pred CCEEEEEEcCCCCccccc---cCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030 108 GDVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY 183 (484)
Q Consensus 108 gkvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~ 183 (484)
+++.+||||||.||||+. +.||+|+|| .|+ ++++++++.+.. .| +--+++...+..+.++++
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv---~gk~pli~~~l~~l~~--------~G---i~~i~iv~~~~~~~i~~~ 67 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPF---GGKYRIIDFTLSNCAN--------SG---IDTVGVLTQYQPLELNNH 67 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeee---CCceeehhHHHHHHHh--------CC---CCEEEEEecCCHHHHHHH
Confidence 478899999999999987 899999999 889 899999998853 35 656666668899999999
Q ss_pred HHHcCCCCCCCC--cEEEEEcCCccccccCCcccccCCCcce-eccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCC
Q psy10030 184 FERNGYFGLDPA--HVIFFKQRSMPCFSLSGEILLETRDRVA-RSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDN 260 (484)
Q Consensus 184 l~~~~~fgl~~~--~v~~f~Q~~~P~~~~~g~~~l~~~~~i~-~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN 260 (484)
|++...|+++.. .+.+ .|.. ..... ..|.|+|+.+..... .+....-++++|+++|+
T Consensus 68 ~~~~~~~~~~~~~~~~~i-~~~~--------------~~~~~~~~~~Gta~al~~a~~-----~l~~~~~~~~lV~~gD~ 127 (380)
T PRK05293 68 IGIGSPWDLDRINGGVTI-LPPY--------------SESEGGKWYKGTAHAIYQNID-----YIDQYDPEYVLILSGDH 127 (380)
T ss_pred HhCCCcccccCCCCCEEE-eCCc--------------ccCCCCcccCCcHHHHHHHHH-----HHHhCCCCEEEEecCCE
Confidence 987766776532 1211 1100 00001 125799887765432 23222347899999999
Q ss_pred CccccCCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeee
Q psy10030 261 ILVKVGDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHY 339 (484)
Q Consensus 261 ~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~ 339 (484)
+. ...--.++..|..+++++++-+.... ....++|++...++ -+|.++.+-|.. . .-+..|++.++
T Consensus 128 l~-~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~-g~V~~~~eKp~~-~----------~~~~~~~Giyi 194 (380)
T PRK05293 128 IY-KMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDEN-MRIVEFEEKPKN-P----------KSNLASMGIYI 194 (380)
T ss_pred EE-cCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCC-CcEEEEEeCCCC-C----------CcceeeeEEEE
Confidence 74 33333467777777888765543321 12357788765422 234555554432 1 11356889999
Q ss_pred ecHHHHHHHh
Q psy10030 340 FSLECLQRMV 349 (484)
Q Consensus 340 ~~l~~l~~~~ 349 (484)
|+.+.|.+++
T Consensus 195 ~~~~~l~~~l 204 (380)
T PRK05293 195 FNWKRLKEYL 204 (380)
T ss_pred EcHHHHHHHH
Confidence 9988876654
No 22
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.23 E-value=1.4e-10 Score=120.63 Aligned_cols=190 Identities=14% Similarity=0.103 Sum_probs=121.1
Q ss_pred CEEEEEEcCCCCccccc---cCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCch-HHHHH
Q psy10030 109 DVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDR-PTREY 183 (484)
Q Consensus 109 kvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e-~t~~~ 183 (484)
++.+|+||||.||||+. +.||+|+|| .|+ |+++++++.+.+ .| +--+++...+.++ .+++|
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV---~gk~PlIe~~l~~L~~--------~G---i~~I~iv~~~~~~~~I~~~ 67 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPF---GGRYRLIDFPLSNMVN--------AG---IRNVFIFFKNKERQSLFDH 67 (369)
T ss_pred cEEEEEECCCCCccccccccCCccccccc---CCeeeEEEEEhhhhhc--------cC---CCEEEEEeCCCcHHHHHHH
Confidence 68899999999999975 899999999 899 899999998864 45 7778888888776 99999
Q ss_pred HHHcCCCCCCCCc---EEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCC
Q psy10030 184 FERNGYFGLDPAH---VIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDN 260 (484)
Q Consensus 184 l~~~~~fgl~~~~---v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN 260 (484)
|.+...||++..+ +.++.|+ ..|.|+|+++...... +.+...+-++++|+|+|+
T Consensus 68 l~~~~~~~~~~~~~~~~~~~~~e--------------------~~~l~tg~~~a~~~a~---~~l~~~~~~~~lvlnGD~ 124 (369)
T TIGR02092 68 LGSGREWDLHRKRDGLFVFPYND--------------------RDDLSEGGKRYFSQNL---EFLKRSTSEYTVVLNSHM 124 (369)
T ss_pred HhCCCCCCcccccCcEEEEeccC--------------------CCCcccChHHHHHHHH---HHHHhCCCCEEEEECCCE
Confidence 9886667765221 1111221 2356777765332211 222222347899999999
Q ss_pred CccccCCHHHHHHHHHcCCceEEEEEEcc--CCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceee
Q psy10030 261 ILVKVGDPTFLGYCVEQGAHCGVKVVEKI--TPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICN 337 (484)
Q Consensus 261 ~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~--~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~ 337 (484)
+. ...--.++.+|.++++++++-+.+.. ++....|++... +| .+.++.+-++. .. . ...|+.+
T Consensus 125 l~-~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g--~v~~~~~~~~~------~~----~-~~~~~Gi 190 (369)
T TIGR02092 125 VC-NIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESG--KVKSIGQNLNP------EE----E-ENISLDI 190 (369)
T ss_pred EE-ecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCC--CEEeccccCCC------CC----c-ceeeeeE
Confidence 64 33333578888888999877665543 344333444433 34 33332211111 00 0 1246789
Q ss_pred eeecHHHHHHHh
Q psy10030 338 HYFSLECLQRMV 349 (484)
Q Consensus 338 ~~~~l~~l~~~~ 349 (484)
++|+-+.+.++.
T Consensus 191 yi~~~~~l~~~l 202 (369)
T TIGR02092 191 YIVSTDLLIELL 202 (369)
T ss_pred EEEEHHHHHHHH
Confidence 999987665544
No 23
>PRK10122 GalU regulator GalF; Provisional
Probab=99.23 E-value=5.1e-10 Score=113.55 Aligned_cols=186 Identities=16% Similarity=0.208 Sum_probs=121.7
Q ss_pred CEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030 109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE 185 (484)
Q Consensus 109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~ 185 (484)
++.+||||||.||||+ ...||+|+|| .||++++++++.+.. .| |--+++...+..+.+.+||.
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi---~gkpiI~~~l~~l~~--------~G---i~~i~iv~~~~~~~i~~~~~ 68 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA--------AG---IKEIVLVTHASKNAVENHFD 68 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEcCCChHHHHHHHh
Confidence 6889999999999998 4789999999 899999999998864 35 66777777889999999996
Q ss_pred HcCCCCCC---------------------CCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHH
Q psy10030 186 RNGYFGLD---------------------PAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDT 244 (484)
Q Consensus 186 ~~~~fgl~---------------------~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~ 244 (484)
. + ++++ ..++.+.. +..|.|+|+.+......
T Consensus 69 ~-~-~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~---------------------q~~~lGtg~al~~a~~~----- 120 (297)
T PRK10122 69 T-S-YELESLLEQRVKRQLLAEVQSICPPGVTIMNVR---------------------QGQPLGLGHSILCARPA----- 120 (297)
T ss_pred c-c-hhHHHHHhhcchhhhHHhhhhccCCCceEEEee---------------------cCCcCchHHHHHHHHHH-----
Confidence 3 2 2211 01122222 33489999988765432
Q ss_pred HHHcCCeEEEEEeCCCCcccc-------CC-HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-----CCeE-EEEEe
Q psy10030 245 MHTRGIKHIHVYCVDNILVKV-------GD-PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-----DGKH-KIVEY 310 (484)
Q Consensus 245 l~~~G~~~i~v~~vDN~l~~~-------~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-----~g~~-~vvEy 310 (484)
. +-+.++|+++|++. .. .| -.++.+|.+.++++.+- ........++|++... +|.. +|+++
T Consensus 121 -l--~~~~fvvi~gD~l~-~~~~~~~~~~dl~~li~~h~~~~~~~~~~-~~~~~~~~~yGvv~~d~~~~~~g~v~~I~~~ 195 (297)
T PRK10122 121 -I--GDNPFVVVLPDVVI-DDASADPLRYNLAAMIARFNETGRSQVLA-KRMPGDLSEYSVIQTKEPLDREGKVSRIVEF 195 (297)
T ss_pred -c--CCCCEEEEECCeec-cCccccccchhHHHHHHHHHHhCCcEEEE-EECCCCCCCceEEEecCcccCCCCeeeEEEE
Confidence 2 23446677899974 21 12 23677777777775433 3332234578988763 4543 67777
Q ss_pred ccCCcccccccccCCCcccccccceeeeeecHHHHHHHh
Q psy10030 311 SELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMV 349 (484)
Q Consensus 311 se~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~ 349 (484)
.|-|.. -.+. .-+..|+..++|+-+.++.+.
T Consensus 196 ~EKp~~-~~~~-------~s~~~~~GiYi~~~~i~~~l~ 226 (297)
T PRK10122 196 IEKPDQ-PQTL-------DSDLMAVGRYVLSADIWPELE 226 (297)
T ss_pred EECCCC-cccC-------CccEEEEEEEEECHHHHHHHH
Confidence 665532 1111 113578899999987666553
No 24
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.23 E-value=2.7e-10 Score=111.26 Aligned_cols=177 Identities=19% Similarity=0.211 Sum_probs=115.6
Q ss_pred EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEE-EEeCCCCchHHHHHHHH
Q psy10030 111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF-IMTSELTDRPTREYFER 186 (484)
Q Consensus 111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~-iMtS~~t~e~t~~~l~~ 186 (484)
.+|+||||.||||+. ..||+++|+ .+++++++.++.+.. .| +.-+ +++..+..+.+.+++.+
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv---~~~pli~~~l~~l~~--------~g---i~~i~vv~~~~~~~~~~~~l~~ 67 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPV---YDKPMIYYPLSTLML--------AG---IREILIISTPEDLPLFKELLGD 67 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEE---CCEEhHHHHHHHHHH--------CC---CCEEEEEeCcchHHHHHHHHhc
Confidence 479999999999976 789999999 699999999888753 34 5444 44555556788899987
Q ss_pred cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030 187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG 266 (484)
Q Consensus 187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~ 266 (484)
...+++. |.+-. ...|.|+|+.+..... +. +-+.++|.++|+++....
T Consensus 68 ~~~~~~~---i~~~~---------------------~~~~~G~~~al~~a~~------~~--~~~~~lv~~gD~~~~~~~ 115 (240)
T cd02538 68 GSDLGIR---ITYAV---------------------QPKPGGLAQAFIIGEE------FI--GDDPVCLILGDNIFYGQG 115 (240)
T ss_pred ccccCce---EEEee---------------------CCCCCCHHHHHHHHHH------hc--CCCCEEEEECCEEEccHH
Confidence 5556543 32211 1236788887764332 11 235678889999753221
Q ss_pred CHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030 267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL 345 (484)
Q Consensus 267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l 345 (484)
--.++-+|.+++.++++-+.+..++ ++.|++... +| .|+++.|-|.. . .-...|++.++|+-+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~g--~v~~~~ekp~~-~----------~~~~~~~Giyi~~~~~l 181 (240)
T cd02538 116 LSPILQRAAAQKEGATVFGYEVNDP-ERYGVVEFDENG--RVLSIEEKPKK-P----------KSNYAVTGLYFYDNDVF 181 (240)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCch-hcCceEEecCCC--cEEEEEECCCC-C----------CCCeEEEEEEEECHHHH
Confidence 2235666777788888777665544 567887654 44 44555443322 0 11246788999998776
Q ss_pred HH
Q psy10030 346 QR 347 (484)
Q Consensus 346 ~~ 347 (484)
+.
T Consensus 182 ~~ 183 (240)
T cd02538 182 EI 183 (240)
T ss_pred HH
Confidence 43
No 25
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.22 E-value=5.9e-10 Score=110.38 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=123.2
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
+|+||||.||||+. +.||+|+|| .|+|++++.++.+.. .| |.-+++...+..+.+.++|.+..
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv---~g~pii~~~l~~l~~--------~g---i~~i~iv~~~~~~~i~~~~~~~~ 67 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEI---GGKPILWHIMKIYSH--------HG---INDFIICCGYKGYVIKEYFANYF 67 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEcCCCHHHHHHHHHhhh
Confidence 58899999999975 589999999 899999988877753 34 88888888899999999998643
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
.++.+ .++. ++++.+.....+.+. +.-....+..|.|+||.+...... .+-++++|.|+|++. ...--
T Consensus 68 ~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~gt~~al~~~~~~--------i~~e~flv~~gD~i~-~~dl~ 135 (254)
T TIGR02623 68 LHMSD-VTFH-MADNTMEVHHKRVEP-WRVTLVDTGESTQTGGRLKRVREY--------LDDEAFCFTYGDGVA-DIDIK 135 (254)
T ss_pred hcccC-eeEE-ecccccccccccCCc-cceeeeecCCcCCcHHHHHHHHHh--------cCCCeEEEEeCCeEe-cCCHH
Confidence 32211 1222 233332222211110 000011223578999988765432 224678899999974 33333
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030 269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346 (484)
Q Consensus 269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~ 346 (484)
.++.+|.+.++++++.+++ +.++.|++...+| .|.++.|-|.. . -+..|++.++|+-+.++
T Consensus 136 ~~~~~h~~~~~d~tl~~~~---~~~~yG~v~~d~~--~V~~~~Ekp~~-~-----------~~~i~~Giyi~~~~il~ 196 (254)
T TIGR02623 136 ALIAFHRKHGKKATVTAVQ---PPGRFGALDLEGE--QVTSFQEKPLG-D-----------GGWINGGFFVLNPSVLD 196 (254)
T ss_pred HHHHHHHHcCCCEEEEEec---CCCcccEEEECCC--eEEEEEeCCCC-C-----------CCeEEEEEEEEcHHHHh
Confidence 4777888888998765552 3357899876555 45555543321 0 13578899999987763
No 26
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.22 E-value=5.8e-10 Score=110.22 Aligned_cols=182 Identities=18% Similarity=0.284 Sum_probs=121.6
Q ss_pred EEEEcCC--CCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030 112 VIVLAGG--QGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER 186 (484)
Q Consensus 112 vviLaGG--~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~ 186 (484)
+|||||| .||||+. +.||+|+|| .|+|++++.++.+..+ .| +.-+++...+..+.+.+++.+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv---~g~plI~~~l~~l~~~-------~g---i~~i~iv~~~~~~~i~~~l~~ 67 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPV---AGKPMIHHHIEACAKV-------PD---LKEVLLIGFYPESVFSDFISD 67 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeE---CCeeHHHHHHHHHHhc-------CC---CcEEEEEecCCHHHHHHHHHh
Confidence 4789999 8999986 889999999 8999999998888531 24 666777777888999999986
Q ss_pred cC-CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030 187 NG-YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV 265 (484)
Q Consensus 187 ~~-~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~ 265 (484)
.. .+|+. |.+..| ..|.|+|+.+..... .+....-++++|.++|++. ..
T Consensus 68 ~~~~~~~~---i~~~~~---------------------~~~~Gt~~al~~a~~-----~l~~~~~~~~lv~~gD~~~-~~ 117 (257)
T cd06428 68 AQQEFNVP---IRYLQE---------------------YKPLGTAGGLYHFRD-----QILAGNPSAFFVLNADVCC-DF 117 (257)
T ss_pred cccccCce---EEEecC---------------------CccCCcHHHHHHHHH-----HhhccCCCCEEEEcCCeec-CC
Confidence 42 23432 322222 236899998765432 2222235789999999984 33
Q ss_pred CCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE--CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030 266 GDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV--DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL 342 (484)
Q Consensus 266 ~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~--~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l 342 (484)
.--.++.+|.++++++++-+.+.. ....+.|++... +|+ |.++.|-|.. . .-+..|++.++|+-
T Consensus 118 dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~--v~~~~Ekp~~-~----------~~~~~~~Giyi~~~ 184 (257)
T cd06428 118 PLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGE--VLHYVEKPET-F----------VSDLINCGVYLFSP 184 (257)
T ss_pred CHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCe--EEEEEeCCCC-c----------ccceEEEEEEEECH
Confidence 334478888888998887665532 123567887654 343 4444443322 1 01257889999999
Q ss_pred HHHHHHh
Q psy10030 343 ECLQRMV 349 (484)
Q Consensus 343 ~~l~~~~ 349 (484)
+.++.+.
T Consensus 185 ~~~~~i~ 191 (257)
T cd06428 185 EIFDTIK 191 (257)
T ss_pred HHHHHHh
Confidence 8776553
No 27
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.21 E-value=5.6e-10 Score=108.57 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=123.5
Q ss_pred EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030 111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~ 187 (484)
-+|+||||.||||+. +.||+++|+ .|++++++.++.+.. .| +.-++....+.++.+.+++.+.
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~--------~g---~~~v~iv~~~~~~~~~~~l~~~ 67 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEF---CNKPMIEHQIEALAK--------AG---VKEIILAVNYRPEDMVPFLKEY 67 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeE---CCcchHHHHHHHHHH--------CC---CcEEEEEeeeCHHHHHHHHhcc
Confidence 379999999999975 789999999 799999999988864 23 5556666677788899999753
Q ss_pred C-CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030 188 G-YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG 266 (484)
Q Consensus 188 ~-~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~ 266 (484)
. .+|+. +.+ ..+..|.|+|+.+..... . ....-+-++|++.|++. ...
T Consensus 68 ~~~~~~~---i~~---------------------~~~~~~~G~~~al~~a~~-----~-~~~~~~~~lv~~~D~~~-~~~ 116 (233)
T cd06425 68 EKKLGIK---ITF---------------------SIETEPLGTAGPLALARD-----L-LGDDDEPFFVLNSDVIC-DFP 116 (233)
T ss_pred cccCCeE---EEe---------------------ccCCCCCccHHHHHHHHH-----H-hccCCCCEEEEeCCEee-CCC
Confidence 1 23321 211 112336898887765432 2 22212447888999875 333
Q ss_pred CHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030 267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346 (484)
Q Consensus 267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~ 346 (484)
-..++.+|.++++++++.+.+..++ .+.|++...++.-+|+++.+-|.+ . .-+..|++.++|+-+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~~v~~~~ekp~~-~----------~~~~~~~Giyi~~~~~l~ 184 (233)
T cd06425 117 LAELLDFHKKHGAEGTILVTKVEDP-SKYGVVVHDENTGRIERFVEKPKV-F----------VGNKINAGIYILNPSVLD 184 (233)
T ss_pred HHHHHHHHHHcCCCEEEEEEEcCCc-cccCeEEEcCCCCEEEEEEECCCC-C----------CCCEEEEEEEEECHHHHH
Confidence 3468888988999999888876544 578988655422356677655443 1 113568899999998886
Q ss_pred HHh
Q psy10030 347 RMV 349 (484)
Q Consensus 347 ~~~ 349 (484)
.+.
T Consensus 185 ~l~ 187 (233)
T cd06425 185 RIP 187 (233)
T ss_pred hcc
Confidence 654
No 28
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.20 E-value=9.1e-10 Score=106.87 Aligned_cols=178 Identities=24% Similarity=0.341 Sum_probs=116.6
Q ss_pred EEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030 110 VAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER 186 (484)
Q Consensus 110 vavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~ 186 (484)
+.+|+||||.||||+ .+.||+++|| .|++++++.++.+.. .| +.-+++...+..+.+.+++++
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i---~g~~li~~~l~~l~~--------~~---~~~i~vv~~~~~~~~~~~~~~ 66 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPV---AGKPIIQYAIEDLRE--------AG---IEDIGIVVGPTGEEIKEALGD 66 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEE---CCcchHHHHHHHHHH--------CC---CCEEEEEcCCCHHHHHHHhcc
Confidence 458999999999997 4899999999 799999998888753 23 444444444578889999987
Q ss_pred cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030 187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG 266 (484)
Q Consensus 187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~ 266 (484)
...++++ +.+..|. .|.|+++.+..... .+ +.+.+++.++|++. ...
T Consensus 67 ~~~~~~~---i~~~~~~---------------------~~~g~~~sl~~a~~-----~i---~~~~~li~~~D~~~-~~~ 113 (236)
T cd04189 67 GSRFGVR---ITYILQE---------------------EPLGLAHAVLAARD-----FL---GDEPFVVYLGDNLI-QEG 113 (236)
T ss_pred hhhcCCe---EEEEECC---------------------CCCChHHHHHHHHH-----hc---CCCCEEEEECCeec-CcC
Confidence 5555543 4333332 25788776664332 11 12346778899885 332
Q ss_pred CHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030 267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346 (484)
Q Consensus 267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~ 346 (484)
--.++-.|..+++++++.+.+..++ .+.|++...+| .|+++.+-+.. . .....|+++++|+-++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~d~~--~v~~~~ek~~~-~----------~~~~~~~Giy~~~~~~~~ 179 (236)
T cd04189 114 ISPLVRDFLEEDADASILLAEVEDP-RRFGVAVVDDG--RIVRLVEKPKE-P----------PSNLALVGVYAFTPAIFD 179 (236)
T ss_pred HHHHHHHHHhcCCceEEEEEECCCc-ccceEEEEcCC--eEEEEEECCCC-C----------CCCEEEEEEEEeCHHHHH
Confidence 2335566777888888877766544 45787765555 55565554332 1 113578999999977665
Q ss_pred HH
Q psy10030 347 RM 348 (484)
Q Consensus 347 ~~ 348 (484)
.+
T Consensus 180 ~l 181 (236)
T cd04189 180 AI 181 (236)
T ss_pred HH
Confidence 44
No 29
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.20 E-value=2e-10 Score=112.16 Aligned_cols=181 Identities=22% Similarity=0.266 Sum_probs=126.6
Q ss_pred EEEEcCCCCcccc---ccCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccE-EEEeCCCCchHHHHHHHH
Q psy10030 112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPW-FIMTSELTDRPTREYFER 186 (484)
Q Consensus 112 vviLaGG~GTRLG---~~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl-~iMtS~~t~e~t~~~l~~ 186 (484)
.||||||.||||+ .+.||+|+|+ .|+ |++++.++.+.. .| +-- ++.+..+..+.+.+++++
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i---~g~~pli~~~l~~l~~--------~g---~~~ii~V~~~~~~~~i~~~~~~ 67 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPI---GGKYPLIDYVLENLAN--------AG---IKEIIVVVNGYKEEQIEEHLGS 67 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEE---TTEEEHHHHHHHHHHH--------TT---CSEEEEEEETTTHHHHHHHHTT
T ss_pred EEEECCCCCccCchhhhcccccccee---cCCCcchhhhhhhhcc--------cC---CceEEEEEeecccccccccccc
Confidence 5888999999997 4889999999 788 999999998864 34 555 677777888899999998
Q ss_pred cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcC-CeEEEEEeCCCCcccc
Q psy10030 187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRG-IKHIHVYCVDNILVKV 265 (484)
Q Consensus 187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G-~~~i~v~~vDN~l~~~ 265 (484)
...+++ +|.+..|+. |.|+|+.+..+.. .+.... -++++|+++|++.. .
T Consensus 68 ~~~~~~---~i~~i~~~~---------------------~~Gta~al~~a~~-----~i~~~~~~~~~lv~~gD~i~~-~ 117 (248)
T PF00483_consen 68 GYKFGV---KIEYIVQPE---------------------PLGTAGALLQALD-----FIEEEDDDEDFLVLNGDIIFD-D 117 (248)
T ss_dssp SGGGTE---EEEEEEESS---------------------SSCHHHHHHHTHH-----HHTTSEE-SEEEEETTEEEES-T
T ss_pred cccccc---cceeeeccc---------------------ccchhHHHHHHHH-----HhhhccccceEEEEecccccc-c
Confidence 655553 355555544 5699998886543 222111 24699999999853 3
Q ss_pred CCHHHHHHHHHcCCc--eEEEEEEccCCCcccceEEEEC-CeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030 266 GDPTFLGYCVEQGAH--CGVKVVEKITPGESLGVLCNVD-GKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL 342 (484)
Q Consensus 266 ~Dp~~lg~~~~~~~~--~~~~vv~k~~~~e~~G~l~~~~-g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l 342 (484)
.-..++-.|..++.+ +++..++.. ...+.|++...+ | +|+++-|-|.. .. ..+..|++.++|+-
T Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~v~~d~~~--~V~~~~EKP~~-~~---------~~~~~~~G~Y~~~~ 184 (248)
T PF00483_consen 118 DLQDMLEFHRESNADGTVTLLVVPVE-DPSRYGVVEVDEDG--RVIRIVEKPDN-PN---------ASNLINTGIYIFKP 184 (248)
T ss_dssp THHHHHHHHHHHSSCESEEEEEEESS-GGGGSEEEEEETTS--EEEEEEESCSS-HS---------HSSEEEEEEEEEET
T ss_pred hhhhHHHhhhcccccccccccccccc-ccccceeeeeccce--eEEEEeccCcc-cc---------cceeccCceEEEcc
Confidence 334588889888884 455555544 456778877664 5 45555444443 10 02467888999998
Q ss_pred HHHHHHh
Q psy10030 343 ECLQRMV 349 (484)
Q Consensus 343 ~~l~~~~ 349 (484)
+.+..++
T Consensus 185 ~~~~~~~ 191 (248)
T PF00483_consen 185 EIFDFLL 191 (248)
T ss_dssp HHHHHHH
T ss_pred hHHHHHh
Confidence 8887775
No 30
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.17 E-value=1.2e-09 Score=115.47 Aligned_cols=201 Identities=19% Similarity=0.235 Sum_probs=128.1
Q ss_pred CCEEEEEEcCCCCcccc---ccCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030 108 GDVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY 183 (484)
Q Consensus 108 gkvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~ 183 (484)
.++.+|+||||.||||+ .+.||+|+|| .|+ +++++.++.+.. .| +.-+++...+..+.+.++
T Consensus 4 ~~~~avILAaG~GtRl~PLT~~~PK~llPv---~gk~plI~~~L~~l~~--------~G---i~~i~iv~~~~~~~i~~~ 69 (407)
T PRK00844 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPF---GGSYRLIDFVLSNLVN--------SG---YLRIYVLTQYKSHSLDRH 69 (407)
T ss_pred CceEEEEECCCCCCccchhhcCCcccceee---CCcceEhHHHHHHHHH--------CC---CCEEEEEeccCHHHHHHH
Confidence 57999999999999998 6899999999 898 999999888864 34 777788888999999999
Q ss_pred HHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcc
Q psy10030 184 FERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV 263 (484)
Q Consensus 184 l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~ 263 (484)
|.+. +.+....+.++.. .|.- ...-...|.|+||.+..... .+.....++++|.++|++.
T Consensus 70 ~~~~--~~~~~~~~~~~~~--~~~~----------~~~~~~~~lGta~al~~a~~-----~i~~~~~~~~lv~~gD~v~- 129 (407)
T PRK00844 70 ISQT--WRLSGLLGNYITP--VPAQ----------QRLGKRWYLGSADAIYQSLN-----LIEDEDPDYVVVFGADHVY- 129 (407)
T ss_pred HHhC--cCccccCCCeEEE--CCcc----------cCCCCCcccCCHHHHHHHHH-----HHHhcCCCEEEEecCCEEE-
Confidence 9743 3322111211110 0000 00011236899998775432 3333334789999999974
Q ss_pred ccCCHHHHHHHHHcCCceEEEEEE--ccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeee
Q psy10030 264 KVGDPTFLGYCVEQGAHCGVKVVE--KITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYF 340 (484)
Q Consensus 264 ~~~Dp~~lg~~~~~~~~~~~~vv~--k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~ 340 (484)
...--.++.+|..+++++++.+.. ..++ .+.|++... +|+ +.++.+-|.. ....... ......|++.+.|
T Consensus 130 ~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~-~~~Gvv~~d~~g~--v~~~~eKp~~-~~~~~~~---~~~~~~~~Giyi~ 202 (407)
T PRK00844 130 RMDPRQMVDFHIESGAGVTVAAIRVPREEA-SAFGVIEVDPDGR--IRGFLEKPAD-PPGLPDD---PDEALASMGNYVF 202 (407)
T ss_pred cCCHHHHHHHHHhcCCcEEEEEEecchHHc-ccCCEEEECCCCC--EEEEEECCCC-cccccCC---CCCcEEEeEEEEE
Confidence 333335788888888887766543 2333 467888754 444 4444444432 1110100 0123578889999
Q ss_pred cHHHHHHHh
Q psy10030 341 SLECLQRMV 349 (484)
Q Consensus 341 ~l~~l~~~~ 349 (484)
+-++|.+++
T Consensus 203 ~~~~l~~~l 211 (407)
T PRK00844 203 TTDALVDAL 211 (407)
T ss_pred eHHHHHHHH
Confidence 998875544
No 31
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.15 E-value=1.7e-09 Score=104.20 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=116.1
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
+|+||||.||||+. +.||+|+|+ .|++++++.++.+.+ .| +.-+++...+..+.+.+++.+ .
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi---~g~~li~~~l~~l~~--------~g---i~~i~iv~~~~~~~i~~~~~~-~ 66 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPV---AGKPLIDHALDRLAA--------AG---IRRIVVNTHHLADQIEAHLGD-S 66 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeE---CCEEHHHHHHHHHHH--------CC---CCEEEEEccCCHHHHHHHHhc-c
Confidence 58999999999975 799999999 799999999988864 34 777888888999999999987 4
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
++|+. |.+..|. ..+.|+++.+..... .+ +.++++|++.|++. ...--
T Consensus 67 ~~~~~---i~~~~~~--------------------~~~~g~~~~l~~~~~-----~~---~~~~~lv~~~D~i~-~~~~~ 114 (221)
T cd06422 67 RFGLR---ITISDEP--------------------DELLETGGGIKKALP-----LL---GDEPFLVVNGDILW-DGDLA 114 (221)
T ss_pred cCCce---EEEecCC--------------------CcccccHHHHHHHHH-----hc---CCCCEEEEeCCeee-CCCHH
Confidence 45542 3222111 135688776654332 11 23789999999985 33223
Q ss_pred HHHHHHH--HcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030 269 TFLGYCV--EQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346 (484)
Q Consensus 269 ~~lg~~~--~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~ 346 (484)
.++-.|. ..++.+++.+++... .+..|++...++ -.+.++.+-++. +..|++.++|+-+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~v~~d~~-~~v~~~~~~~~~--------------~~~~~Giyi~~~~~l~ 178 (221)
T cd06422 115 PLLLLHAWRMDALLLLLPLVRNPG-HNGVGDFSLDAD-GRLRRGGGGAVA--------------PFTFTGIQILSPELFA 178 (221)
T ss_pred HHHHHHHhccCCCceEEEEEEcCC-CCCcceEEECCC-CcEeecccCCCC--------------ceEEEEEEEEcHHHHh
Confidence 3555565 456677766666543 345687765432 234444322211 3468888999987776
Q ss_pred HHh
Q psy10030 347 RMV 349 (484)
Q Consensus 347 ~~~ 349 (484)
.+.
T Consensus 179 ~l~ 181 (221)
T cd06422 179 GIP 181 (221)
T ss_pred hCC
Confidence 654
No 32
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.14 E-value=1.3e-09 Score=105.05 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=105.1
Q ss_pred EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030 111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~ 187 (484)
-+|+||||.||||+. ..||+|+|| .|++++++.++.+.+ .| +.-+++...+..+.++++|++.
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi---~g~piI~~~l~~l~~--------~G---i~~I~iv~~~~~~~i~~~l~~~ 67 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPL---ANVPLIDYTLEFLAL--------NG---VEEVFVFCCSHSDQIKEYIEKS 67 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEE---CCEehHHHHHHHHHH--------CC---CCeEEEEeCCCHHHHHHHHhhc
Confidence 379999999999984 899999999 899999999988864 35 6555555557889999999986
Q ss_pred CCCCCCC--CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030 188 GYFGLDP--AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV 265 (484)
Q Consensus 188 ~~fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~ 265 (484)
.++++.. ..+.+..| ..+.|.|++++.+...+.+ .+++++.++|++. .
T Consensus 68 ~~~~~~~~~~~i~~~~~---------------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~--~ 117 (217)
T cd04197 68 KWSKPKSSLMIVIIIMS---------------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVS--N 117 (217)
T ss_pred cccccccCcceEEEEeC---------------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCeee--c
Confidence 5555431 12222211 1256788888765443221 3567899999985 3
Q ss_pred CCH-HHHHHHHHc-----CCceEEEEEEccCCCc-----ccceEEEECCeEEEEEeccCC
Q psy10030 266 GDP-TFLGYCVEQ-----GAHCGVKVVEKITPGE-----SLGVLCNVDGKHKIVEYSELG 314 (484)
Q Consensus 266 ~Dp-~~lg~~~~~-----~~~~~~~vv~k~~~~e-----~~G~l~~~~g~~~vvEyse~~ 314 (484)
.|. .++.+|.++ ++++++-+.+...+.. ..|++...+..-+++.+.+-+
T Consensus 118 ~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp 177 (217)
T cd04197 118 IDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELP 177 (217)
T ss_pred cCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEeccc
Confidence 444 478888773 7888776655543331 135655443323455555544
No 33
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.14 E-value=3.4e-09 Score=114.40 Aligned_cols=176 Identities=19% Similarity=0.248 Sum_probs=113.0
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
++.+|+||||.||||+...||.|+|+ .|+|++++.++.+.+ .| +.-+++...+..+.+.++++.
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi---~gkpli~~~l~~l~~--------~g---i~~ivvv~~~~~~~i~~~~~~-- 70 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPV---AGRPMVAWAVKAARD--------LG---ARKIVVVTGHGAEQVEAALQG-- 70 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEE---CCeeHHHHHHHHHHh--------CC---CCeEEEEeCCCHHHHHHHhcc--
Confidence 58899999999999998889999999 899999999888854 23 555566666777788887752
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
.+ +.+..|+ .|.|+|+.+..... .+ ...-+.++|+++|+++....+.
T Consensus 71 -~~-----i~~v~~~---------------------~~~Gt~~al~~~~~-----~l-~~~~~~~lV~~gD~P~i~~~~l 117 (481)
T PRK14358 71 -SG-----VAFARQE---------------------QQLGTGDAFLSGAS-----AL-TEGDADILVLYGDTPLLRPDTL 117 (481)
T ss_pred -CC-----cEEecCC---------------------CcCCcHHHHHHHHH-----Hh-hCCCCcEEEEeCCeeccCHHHH
Confidence 12 3332221 26788887664322 22 2223447899999976432222
Q ss_pred -HHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030 269 -TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE 343 (484)
Q Consensus 269 -~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~ 343 (484)
.++.++.++++++++-+.+..++ .++|++... +|+ +.++.|-++....+. .-+..|++.++|+-+
T Consensus 118 ~~ll~~~~~~~~~~ti~~~~~~~~-~~yG~v~~d~~g~--v~~~~Ek~~~~~~~~-------~~~~~n~Giyi~~~~ 184 (481)
T PRK14358 118 RALVADHRAQGSAMTILTGELPDA-TGYGRIVRGADGA--VERIVEQKDATDAEK-------AIGEFNSGVYVFDAR 184 (481)
T ss_pred HHHHHHHHhcCCeEEEEEEEcCCC-CCceEEEECCCCC--EEEEEECCCCChhHh-------hCCeEEEEEEEEchH
Confidence 24666677788887766665544 468998765 454 344444332201110 112468889999944
No 34
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.13 E-value=2.4e-09 Score=113.77 Aligned_cols=200 Identities=18% Similarity=0.215 Sum_probs=128.8
Q ss_pred CCEEEEEEcCCCCccccc---cCCCccccccCCCCCc-HHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030 108 GDVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKS-LFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY 183 (484)
Q Consensus 108 gkvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s-~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~ 183 (484)
.++.+||||||.||||.. +.||+|+|| .|++ ++++.++.+.. .| +.-+++...+..+.+.++
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv---~gkp~lI~~~l~~l~~--------~G---i~~i~vv~~~~~~~i~~~ 79 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYF---GGKFRIIDFALSNCIN--------SG---IRRIGVLTQYKAHSLIRH 79 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEE---CCEEEEhHHHHHHHHH--------CC---CCeEEEEecCCHHHHHHH
Confidence 378999999999999986 799999999 8896 99999988864 34 666666667889999999
Q ss_pred HHHcCCCCCCC----CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCC
Q psy10030 184 FERNGYFGLDP----AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVD 259 (484)
Q Consensus 184 l~~~~~fgl~~----~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vD 259 (484)
|.+. +++.+ ..+.++.+.. ....+..|.|+|+++..... .+....-++++|.++|
T Consensus 80 ~~~~--~~~~~~~~~~~i~i~~~~~--------------~~~~e~~~lGTa~al~~a~~-----~l~~~~~d~~lVl~gD 138 (425)
T PRK00725 80 IQRG--WSFFREELGEFVDLLPAQQ--------------RVDEENWYRGTADAVYQNLD-----IIRRYDPKYVVILAGD 138 (425)
T ss_pred HHhh--hcccccCCCCeEEEeCCcc--------------cCCCCccccCcHHHHHHHHH-----HHHhcCCCEEEEecCC
Confidence 9763 33211 1121111111 11123457899998776542 3333335789999999
Q ss_pred CCccccCCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceee
Q psy10030 260 NILVKVGDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICN 337 (484)
Q Consensus 260 N~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~ 337 (484)
++. ...--.++-+|.++++++++.+.+.. .....+|++... +|+ +.++.|-|.. ....... ...+..|++.
T Consensus 139 ~l~-~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~--V~~~~EKp~~-~~~~~~~---~~~~l~n~GI 211 (425)
T PRK00725 139 HIY-KMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDR--ITAFVEKPAN-PPAMPGD---PDKSLASMGI 211 (425)
T ss_pred eEe-ccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCC--EEEEEECCCC-ccccccC---ccceEEEeeE
Confidence 974 33333478888888998887664431 123467888764 343 4444443322 1100000 1123678999
Q ss_pred eeecHHHHHHHh
Q psy10030 338 HYFSLECLQRMV 349 (484)
Q Consensus 338 ~~~~l~~l~~~~ 349 (484)
++|+-++|.+++
T Consensus 212 Yi~~~~~L~~~L 223 (425)
T PRK00725 212 YVFNADYLYELL 223 (425)
T ss_pred EEEeHHHHHHHH
Confidence 999999876654
No 35
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.13 E-value=3.2e-09 Score=101.42 Aligned_cols=178 Identities=19% Similarity=0.279 Sum_probs=115.1
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
+|+||||+||||+. +.||+++|+ .|+|++++.++.+.. .| +.-++++..+..+.+.+++....
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i---~g~pli~~~l~~l~~--------~g---~~~v~vv~~~~~~~i~~~~~~~~ 66 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPV---AGRPFLEYLLEYLAR--------QG---ISRIVLSVGYLAEQIEEYFGDGY 66 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEE---CCcchHHHHHHHHHH--------CC---CCEEEEEcccCHHHHHHHHcCcc
Confidence 48999999999975 689999999 899999999988863 23 66667777777888888887543
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
.++.. +.+..| ..+.|+++.+..... .+ .-++++|.+.|+++ ...--
T Consensus 67 ~~~~~---~~~~~~---------------------~~~~G~~~~l~~a~~-----~~---~~~~~lv~~~D~~~-~~~~~ 113 (223)
T cd06915 67 RGGIR---IYYVIE---------------------PEPLGTGGAIKNALP-----KL---PEDQFLVLNGDTYF-DVDLL 113 (223)
T ss_pred ccCce---EEEEEC---------------------CCCCcchHHHHHHHh-----hc---CCCCEEEEECCccc-CCCHH
Confidence 23321 221111 235788765543322 12 34789999999975 22222
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030 269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM 348 (484)
Q Consensus 269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~ 348 (484)
.++-.+.+.+.++++.+.+..++ .+.|.+...++ -+++++.+-+.. . .....|++.++|+-++++.+
T Consensus 114 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~v~~d~~-~~v~~~~ek~~~-~----------~~~~~~~Giy~~~~~~l~~~ 180 (223)
T cd06915 114 ALLAALRASGADATMALRRVPDA-SRYGNVTVDGD-GRVIAFVEKGPG-A----------APGLINGGVYLLRKEILAEI 180 (223)
T ss_pred HHHHHHHhCCCcEEEEEEECCCC-CcceeEEECCC-CeEEEEEeCCCC-C----------CCCcEEEEEEEECHHHHhhC
Confidence 35555666788888877765543 46676543322 244555543322 1 11256788999999988765
Q ss_pred h
Q psy10030 349 V 349 (484)
Q Consensus 349 ~ 349 (484)
.
T Consensus 181 ~ 181 (223)
T cd06915 181 P 181 (223)
T ss_pred C
Confidence 3
No 36
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.12 E-value=4.8e-09 Score=111.78 Aligned_cols=176 Identities=19% Similarity=0.202 Sum_probs=115.7
Q ss_pred EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCC
Q psy10030 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYF 190 (484)
Q Consensus 111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~f 190 (484)
.+|+||||.||||+.+.||.|+|+ .|+|++++.++.+.. .+ -..+|.+ .+..+.+.+++.+
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v---~gkpli~~~l~~l~~--------~~---~~i~vv~-~~~~~~i~~~~~~---- 62 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKI---SGKPMINWVIDTAKK--------VA---QKVGVVL-GHEAELVKKLLPE---- 62 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEE---CCeeHHHHHHHHHHh--------cC---CcEEEEe-CCCHHHHHHhccc----
Confidence 579999999999998899999999 899999999887753 12 1334444 4545666655542
Q ss_pred CCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC-HH
Q psy10030 191 GLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD-PT 269 (484)
Q Consensus 191 gl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D-p~ 269 (484)
.+.++.|+ .|.|+++.+..... .+ . .-+++++++.|+++....| -.
T Consensus 63 -----~~~~~~~~---------------------~~~g~~~ai~~a~~-----~l-~-~~~~vlv~~gD~p~i~~~~i~~ 109 (448)
T PRK14357 63 -----WVKIFLQE---------------------EQLGTAHAVMCARD-----FI-E-PGDDLLILYGDVPLISENTLKR 109 (448)
T ss_pred -----ccEEEecC---------------------CCCChHHHHHHHHH-----hc-C-cCCeEEEEeCCcccCCHHHHHH
Confidence 12233332 25688777664432 12 1 2478999999997643333 23
Q ss_pred HHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHHh
Q psy10030 270 FLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMV 349 (484)
Q Consensus 270 ~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~~ 349 (484)
++.++.++++++++.+++..+| .+.|.+...+|+...+|....+.. . ...+..|++.++|+-+.|.+++
T Consensus 110 l~~~~~~~~~d~ti~~~~~~~~-~~~g~v~~d~g~v~~~e~~~~~~~-~---------~~~~~~~~GiYv~~~~~l~~~~ 178 (448)
T PRK14357 110 LIEEHNRKGADVTILVADLEDP-TGYGRIIRDGGKYRIVEDKDAPEE-E---------KKIKEINTGIYVFSGDFLLEVL 178 (448)
T ss_pred HHHHHHhcCCeEEEEEEEcCCC-CCcEEEEEcCCeEEEEECCCCChH-H---------hcCcEEEeEEEEEEHHHHHHHH
Confidence 5666777789988877776645 457887666777666765432221 1 0113568899999988877655
No 37
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.11 E-value=9e-09 Score=109.72 Aligned_cols=247 Identities=17% Similarity=0.189 Sum_probs=139.7
Q ss_pred EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY 189 (484)
Q Consensus 110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~ 189 (484)
+++|+||||.||||+.+.||.|+|+ .|+|++++.++.+.. .| . ...+|.+ .+..+.+.++++++.
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~--------~g-~-~~iivvv-~~~~~~i~~~~~~~~- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPL---GGKSLVERVLDSCEE--------LK-P-DRRLVIV-GHQAEEVEQSLAHLP- 66 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEE---CChhHHHHHHHHHHh--------CC-C-CeEEEEE-CCCHHHHHHHhcccC-
Confidence 6789999999999998899999999 899999999988864 23 1 2344444 455566777775421
Q ss_pred CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC-H
Q psy10030 190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD-P 268 (484)
Q Consensus 190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D-p 268 (484)
.+.+..|. .+.|+++.+..... .+. ...++++|++.|.++....+ -
T Consensus 67 ------~i~~v~~~---------------------~~~G~~~sv~~~~~-----~l~-~~~~~vlV~~~D~P~i~~~~l~ 113 (450)
T PRK14360 67 ------GLEFVEQQ---------------------PQLGTGHAVQQLLP-----VLK-GFEGDLLVLNGDVPLLRPETLE 113 (450)
T ss_pred ------CeEEEEeC---------------------CcCCcHHHHHHHHH-----Hhh-ccCCcEEEEeCCccccCHHHHH
Confidence 23333221 24677766554332 222 22357899999998632221 2
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030 269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR 347 (484)
Q Consensus 269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~ 347 (484)
.++..+.+.++++++.+.+..+|. ..|.+... +|+ +++..|-+.. ...... -+..|++.++|+.+.+.+
T Consensus 114 ~ll~~~~~~~~~~~~~~~~~~~~~-~~g~~~~d~~g~--v~~~~ek~~~-~~~~~~------~~~~~~Giy~f~~~~l~~ 183 (450)
T PRK14360 114 ALLNTHRSSNADVTLLTARLPNPK-GYGRVFCDGNNL--VEQIVEDRDC-TPAQRQ------NNRINAGIYCFNWPALAE 183 (450)
T ss_pred HHHHHHHhcCCcEEEEEEecCCCC-CccEEEECCCCC--EEEEEECCCC-ChhHhc------CcEEEEEEEEEEHHHHHH
Confidence 245555566777776555555554 46776542 444 3343332221 100000 124678889999988777
Q ss_pred HhhccccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-ccccccCCCCCCCCCCHHHH
Q psy10030 348 MVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSPLDSASDNPVTC 426 (484)
Q Consensus 348 ~~~~~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPvKn~~~~~~~ds~~ta 426 (484)
+.+. +... +.+-|..+.|.++.+.+...+.|.-. +..-+. ..++...+
T Consensus 184 ~~~~---~~~~----------------------~~~~e~~~td~i~~~~~~~~~~v~~~~~~~~i~------~~~dl~~~ 232 (450)
T PRK14360 184 VLPK---LSSN----------------------NDQKEYYLTDTVSLLDPVMAVEVEDYQEINGIN------DRKQLAQC 232 (450)
T ss_pred HHhh---cccc----------------------ccCCceeHHHHHHHHhhceEEecCCHHHhhcCC------CHHHHHHH
Confidence 6521 1000 01233445555554444444444322 221111 12466777
Q ss_pred HHHHHHHHHHHHHHcCcEE
Q psy10030 427 CQAVHALHARWIETAGGVV 445 (484)
Q Consensus 427 ~~~l~~~~~~~l~~~g~~~ 445 (484)
+..+.....+++...|..+
T Consensus 233 ~~~l~~~~~~~~~d~~~~~ 251 (450)
T PRK14360 233 EEILQNRIKEKWMLAGVTF 251 (450)
T ss_pred HHHHHHHHHHHHHhcCcEE
Confidence 7777666666666667764
No 38
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.09 E-value=4.9e-09 Score=100.58 Aligned_cols=173 Identities=23% Similarity=0.339 Sum_probs=114.5
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
+|+||||.||||+. ..||+|+|+ .|++++++.++.+.. .| +.-+++...+..+.+.+++.+..
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~---~g~pli~~~l~~l~~--------~~---~~~iivv~~~~~~~i~~~~~~~~ 66 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKV---GGKPILETIIDRFIA--------QG---FRNFYISVNYLAEMIEDYFGDGS 66 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeE---CCcchHHHHHHHHHH--------CC---CcEEEEECccCHHHHHHHHCCcc
Confidence 58999999999974 789999999 899999999988863 23 66666777777888888887643
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
.++++ +.+..| ..|.|+|+.+..+.. ...+.++|.+.|++. ...--
T Consensus 67 ~~~~~---i~~~~~---------------------~~~~g~~~~l~~~~~---------~~~~~~lv~~~D~i~-~~~~~ 112 (220)
T cd06426 67 KFGVN---ISYVRE---------------------DKPLGTAGALSLLPE---------KPTDPFLVMNGDILT-NLNYE 112 (220)
T ss_pred ccCcc---EEEEEC---------------------CCCCcchHHHHHHHh---------hCCCCEEEEcCCEee-ccCHH
Confidence 34432 332222 135688888765432 225788999999864 33333
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030 269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM 348 (484)
Q Consensus 269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~ 348 (484)
.++..+...+.++++.+.+.. +....|++...+| .|+++.+-+.. -...|++.++|+-++++.+
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~d~~--~v~~~~ek~~~-------------~~~~~~Giy~~~~~~~~~i 176 (220)
T cd06426 113 HLLDFHKENNADATVCVREYE-VQVPYGVVETEGG--RITSIEEKPTH-------------SFLVNAGIYVLEPEVLDLI 176 (220)
T ss_pred HHHHHHHhcCCCEEEEEEEcC-CCCcceEEEECCC--EEEEEEECCCC-------------CCeEEEEEEEEcHHHHhhc
Confidence 466667777888877666544 4455676544443 45555432211 1245788899998876543
No 39
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.07 E-value=5.1e-09 Score=108.28 Aligned_cols=177 Identities=23% Similarity=0.325 Sum_probs=117.9
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHHc
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~~ 187 (484)
+|+||||.||||+. +.||+++|+ .+++++++.++.+.. .| +. .++++.....+.+.+++.+.
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv---~g~pli~~~l~~l~~--------~g---i~~i~vv~~~~~~~~i~~~~~~~ 67 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPV---ANKPILQYAIEDLAE--------AG---ITDIGIVVGPVTGEEIKEIVGEG 67 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEE---CCEeHHHHHHHHHHH--------CC---CCEEEEEeCCCCHHHHHHHHhcc
Confidence 68999999999974 889999999 899999999888753 23 54 45555554889999999875
Q ss_pred CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030 188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD 267 (484)
Q Consensus 188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D 267 (484)
..|+++ +.+..|. .|.|+++.+.+.... + +.+.++|.+.|+++ ...-
T Consensus 68 ~~~~~~---~~~~~~~---------------------~~~G~~~al~~a~~~-----l---~~~~~li~~gD~~~-~~~l 114 (353)
T TIGR01208 68 ERFGAK---ITYIVQG---------------------EPLGLAHAVYTARDF-----L---GDDDFVVYLGDNLI-QDGI 114 (353)
T ss_pred cccCce---EEEEECC---------------------CCCCHHHHHHHHHHh-----c---CCCCEEEEECCeec-CccH
Confidence 556643 3333332 267898877754332 2 22457788999986 3322
Q ss_pred HHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030 268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR 347 (484)
Q Consensus 268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~ 347 (484)
-.++-.|.++++++++-+.+..++ +..|++...++. ++.++.+-+.. . .-...|++.++|+-.+++.
T Consensus 115 ~~l~~~~~~~~~d~ti~~~~~~~~-~~~g~~~~~~~~-~v~~~~ekp~~-~----------~~~~~~~Giy~~~~~l~~~ 181 (353)
T TIGR01208 115 SRFVKSFEEKDYDALILLTKVRDP-TAFGVAVLEDGK-RILKLVEKPKE-P----------PSNLAVVGLYMFRPLIFEA 181 (353)
T ss_pred HHHHHHHHhcCCCcEEEEEECCCh-hhCeEEEEcCCC-cEEEEEECCCC-C----------CccceEEEEEEECHHHHHH
Confidence 347777888899988877765555 467877664332 34444333322 1 0124688899999865554
Q ss_pred H
Q psy10030 348 M 348 (484)
Q Consensus 348 ~ 348 (484)
+
T Consensus 182 l 182 (353)
T TIGR01208 182 I 182 (353)
T ss_pred H
Confidence 4
No 40
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.07 E-value=6.2e-09 Score=99.14 Aligned_cols=177 Identities=24% Similarity=0.349 Sum_probs=117.8
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
+|+||||.||||+. ..||+++|+ .|++++++.++.+.. .| +.-+++...+..+.+.+++.+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v---~g~pli~~~l~~l~~--------~g---~~~i~vv~~~~~~~i~~~~~~~~ 66 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI---AGKPILEYIIERLAR--------AG---IDEIILVVGYLGEQIEEYFGDGS 66 (217)
T ss_pred CEEecCCccccccccccCCCccccEE---CCeeHHHHHHHHHHH--------CC---CCEEEEEeccCHHHHHHHHcChh
Confidence 48999999999974 689999999 899999999988864 23 55555555566778888887654
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
.+|+. +.+..|. .|.|+++.+..... .+ .-++++|.+.|++. ....-
T Consensus 67 ~~~~~---i~~~~~~---------------------~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~~-~~~~~ 113 (217)
T cd04181 67 KFGVN---IEYVVQE---------------------EPLGTAGAVRNAED-----FL---GDDDFLVVNGDVLT-DLDLS 113 (217)
T ss_pred hcCce---EEEEeCC---------------------CCCccHHHHHHhhh-----hc---CCCCEEEEECCeec-CcCHH
Confidence 34432 3332221 25788877765432 12 46789999999975 33344
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030 269 TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM 348 (484)
Q Consensus 269 ~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~ 348 (484)
.++.++..+++++++-+.+.. ...+.|.+...+ .-+|+++.+-+.. .. -...|++.++|+-++++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~d~-~~~v~~~~ek~~~-~~----------~~~~~~Giy~~~~~~~~~l 180 (217)
T cd04181 114 ELLRFHREKGADATIAVKEVE-DPSRYGVVELDD-DGRVTRFVEKPTL-PE----------SNLANAGIYIFEPEILDYI 180 (217)
T ss_pred HHHHHHHhcCCCEEEEEEEcC-CCCcceEEEEcC-CCcEEEEEECCCC-CC----------CCEEEEEEEEECHHHHHhh
Confidence 467778888999888777665 445678765443 2245555554332 10 1256888899998776433
No 41
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.07 E-value=3.6e-09 Score=112.85 Aligned_cols=214 Identities=18% Similarity=0.250 Sum_probs=131.5
Q ss_pred CCEEEEEEcCCCCcccc---ccCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030 108 GDVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY 183 (484)
Q Consensus 108 gkvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~ 183 (484)
.++.+|+||||.||||. .+.||+|+|+ .|+ ++++++++.+.. .| +.-+++...+..+.+.++
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv---~g~~plId~~L~~l~~--------~G---i~~i~iv~~~~~~~i~~~ 67 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPI---GGNYRLIDIPMSNCIN--------SG---INKIYVLTQFNSASLNRH 67 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEe---CCcceEehHHHHHHHh--------CC---CCEEEEEeccCHHHHHHH
Confidence 37889999999999997 4899999999 776 999999888853 35 777777888899999999
Q ss_pred HHHcCCCCCCCCcEEEEEcCCccccccCCcccccC-CCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCc
Q psy10030 184 FERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLET-RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNIL 262 (484)
Q Consensus 184 l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~-~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l 262 (484)
|++...|+.... +.++.+..+ ... ...-...|.|+||.++.... .+++...++.++++|.+.|++.
T Consensus 68 l~~~~~~~~~~~----~~~~~~~i~-------~~~q~~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~gD~v~ 134 (436)
T PLN02241 68 LSRAYNFGNGGN----FGDGFVEVL-------AATQTPGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSGDHLY 134 (436)
T ss_pred HhccCCCCCCcc----cCCCCEEEc-------CCcccCCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecCCeEE
Confidence 985433432210 011110000 000 00001248999998865432 1222111125889999999974
Q ss_pred cccCCHHHHHHHHHcCCceEEEEEEccC-CCcccceEEEECCeEEEEEeccCCcccccccc--c-------C-CCccccc
Q psy10030 263 VKVGDPTFLGYCVEQGAHCGVKVVEKIT-PGESLGVLCNVDGKHKIVEYSELGNCSVFETQ--D-------Q-TGRLKFN 331 (484)
Q Consensus 263 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~~-~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~--~-------~-~g~~~f~ 331 (484)
...--.++.+|.++++++++-+.+... ..+..|++.. ++.-+++++.|-|........ + + +=+...+
T Consensus 135 -~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~-d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (436)
T PLN02241 135 -RMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKI-DDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPY 212 (436)
T ss_pred -ccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEE-CCCCCEEEEEECCCCcccccccccccccccccccccccce
Confidence 333335788888889988766554321 1257898876 333356677665533100000 0 0 0001123
Q ss_pred ccceeeeeecHHHHHHHhh
Q psy10030 332 LGSICNHYFSLECLQRMVK 350 (484)
Q Consensus 332 ~~Ni~~~~~~l~~l~~~~~ 350 (484)
..|+.++.|+-+.|..+.+
T Consensus 213 ~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 213 IASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred EEEeEEEEEEHHHHHHHHH
Confidence 5788999999988866643
No 42
>KOG1322|consensus
Probab=99.04 E-value=1.1e-08 Score=102.65 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=136.5
Q ss_pred CEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCch-HHHHHH
Q psy10030 109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDR-PTREYF 184 (484)
Q Consensus 109 kvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e-~t~~~l 184 (484)
.|+.++|.||.||||. ...||++.|+ .++++++++++.+.. .| |.-+++...++.+ ..+.+.
T Consensus 9 ~vkaiILvGG~GTRLrPLT~t~pKPlVpf---gn~pmI~hqieal~n--------sG---i~~I~la~~y~s~sl~~~~~ 74 (371)
T KOG1322|consen 9 SVKAIILVGGYGTRLRPLTLTRPKPLVPF---GNKPMILHQIEALIN--------SG---ITKIVLATQYNSESLNRHLS 74 (371)
T ss_pred ceeEEEEecCCCceeeceeccCCCccccc---CcchhhHHHHHHHHh--------CC---CcEEEEEEecCcHHHHHHHH
Confidence 6899999999999985 4899999999 599999988887753 34 5555555555555 555555
Q ss_pred HHcC-CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCe-EEEEEeCCCCc
Q psy10030 185 ERNG-YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIK-HIHVYCVDNIL 262 (484)
Q Consensus 185 ~~~~-~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~-~i~v~~vDN~l 262 (484)
+.+. .||. .| +|.|.+ .|.|+.|-..+.++. +...-+ .+||.|.|-+
T Consensus 75 k~y~~~lgV---ei-~~s~et--------------------eplgtaGpl~laR~~------L~~~~~~~ffVLnsDvi- 123 (371)
T KOG1322|consen 75 KAYGKELGV---EI-LASTET--------------------EPLGTAGPLALARDF------LWVFEDAPFFVLNSDVI- 123 (371)
T ss_pred HHhhhccce---EE-EEEecc--------------------CCCcccchHHHHHHH------hhhcCCCcEEEecCCee-
Confidence 5542 3552 34 333333 389999998877643 212121 6899999987
Q ss_pred cccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030 263 VKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL 342 (484)
Q Consensus 263 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l 342 (484)
++..--.|+.+|.+++++.++.|++...| .++|++.-+.+.-+|..++|-|++ . .-+--|...++|+-
T Consensus 124 ~~~p~~~~vqfH~~~gae~TI~~t~vdep-SkyGvv~~d~~~grV~~F~EKPkd-~----------vsnkinaGiYi~~~ 191 (371)
T KOG1322|consen 124 CRMPYKEMVQFHRAHGAEITIVVTKVDEP-SKYGVVVIDEDTGRVIRFVEKPKD-L----------VSNKINAGIYILNP 191 (371)
T ss_pred ecCCHHHHHHHHHhcCCceEEEEEeccCc-cccceEEEecCCCceeEehhCchh-h----------hhccccceEEEECH
Confidence 57666779999999999999999998864 689999877666778888888886 3 22345788999999
Q ss_pred HHHHHHhh
Q psy10030 343 ECLQRMVK 350 (484)
Q Consensus 343 ~~l~~~~~ 350 (484)
+.|.++..
T Consensus 192 ~vL~ri~~ 199 (371)
T KOG1322|consen 192 EVLDRILL 199 (371)
T ss_pred HHHhHhhh
Confidence 99988763
No 43
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=99.04 E-value=1.6e-10 Score=123.51 Aligned_cols=108 Identities=21% Similarity=0.324 Sum_probs=71.5
Q ss_pred CCCCCCChhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc--------
Q psy10030 4 SGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV-------- 75 (484)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~-------- 75 (484)
.++.+ +++.+.+|++.|+++|++|+|||++||||||||||.+.||||++|+++ .++++.++...+...+
T Consensus 82 ~~~~~-~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~--~gksL~q~~~erI~~l~~~~~~~~ 158 (482)
T PTZ00339 82 IDIYE-KEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPV--KKKTLFQFHCEKVRRLEEMAVAVS 158 (482)
T ss_pred ccccc-CHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCC--CCccHHHHHHHHHHHHhhhhhccc
Confidence 34443 477889999999999999999999999999999999999999999863 3444444333222222
Q ss_pred -----ccCCCCcccCCCCCChhhHHHHHHh----chh-----cccCCCEEEEEEc
Q psy10030 76 -----QVFPPNCLSGVNTVDASTLGKYREL----GLK-----LISRGDVAVIVLA 116 (484)
Q Consensus 76 -----~p~~~~~~~~~~~~~~~~~~~~~~~----G~~-----~i~~gkvavviLa 116 (484)
.++|+..|.+..+ .+...++-+. |++ .+.++++-++...
T Consensus 159 ~~~~~~~Ip~~IMTS~~t--~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~ 211 (482)
T PTZ00339 159 GGGDDPTIYILVLTSSFN--HDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDEN 211 (482)
T ss_pred ccccCCCCCEEEEeCcch--HHHHHHHHHhccccCCCcccEEEEecCCcceEecC
Confidence 2467777766432 3333343332 332 3455666665544
No 44
>KOG1460|consensus
Probab=99.03 E-value=8.5e-09 Score=101.88 Aligned_cols=242 Identities=19% Similarity=0.277 Sum_probs=158.9
Q ss_pred CEEEEEEcCC--CCccc---cccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030 109 DVAVIVLAGG--QGTRL---GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY 183 (484)
Q Consensus 109 kvavviLaGG--~GTRL---G~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~ 183 (484)
++.+|+|.|| .|||. .++.||+++|| .|.++.++++....++. | +.-+++.-++..+....|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpi---aG~pmI~Hhi~ac~qi~-------~---l~eI~LvGFy~e~~f~~f 68 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPI---AGVPMIHHHISACKQIS-------G---LAEILLVGFYEERVFTDF 68 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCcccc---CCcchhhhhHHHHhccc-------c---hhheeEEecccchHHHHH
Confidence 4667788888 79995 57999999999 99999999888776544 2 555677778888888888
Q ss_pred HHHc-CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCc
Q psy10030 184 FERN-GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNIL 262 (484)
Q Consensus 184 l~~~-~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l 262 (484)
+.+- +.|.++ | ++--+..|+|+||.+..+++ ...+---..+||.|.|-.
T Consensus 69 is~~~~e~~~p---v---------------------rYL~E~~plGtaGgLyhFrd-----qIl~g~ps~vFvlnaDVC- 118 (407)
T KOG1460|consen 69 ISAIQQEFKVP---V---------------------RYLREDNPLGTAGGLYHFRD-----QILAGSPSAVFVLNADVC- 118 (407)
T ss_pred HHHHHhhcccc---h---------------------hhhccCCCCCcccceeehhh-----HHhcCCCceEEEEeccee-
Confidence 8763 234332 2 35557789999998877664 455455789999999987
Q ss_pred cccCCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeec
Q psy10030 263 VKVGDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFS 341 (484)
Q Consensus 263 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~ 341 (484)
+...-+.++..|...+..+++.++... ......|.++..-..-.++-|.|-|.- +.-..-|...+.|+
T Consensus 119 csfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsT-----------fvSd~InCGvYlF~ 187 (407)
T KOG1460|consen 119 CSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPST-----------FVSDIINCGVYLFT 187 (407)
T ss_pred cCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcch-----------hhhcccceeEEEec
Confidence 445567799999999998887766543 133577888876555567788887654 11234577788999
Q ss_pred HHHHHHHhhc---cccchhhhhccCCCccCCCCCeecCCCCccchhhhhhhcccccCCceEEEEEecc-ccccccCCC
Q psy10030 342 LECLQRMVKE---DAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRD-EFSPLKNSP 415 (484)
Q Consensus 342 l~~l~~~~~~---~~~Lp~~~~~K~ip~~d~~g~~~~p~~pn~~klE~~i~D~~~~~~~~~~~~V~R~-~FsPvKn~~ 415 (484)
-+.++.+.+- ..++ .-..|..|-.++ | | ..-++||+-++.-+.-.++.-+++ .. -++.+|.+-
T Consensus 188 ~eif~~i~~v~~q~~~~--~~~~~~~~~l~~-g----~--~d~irLeqDvlspLag~k~lY~y~--t~~fW~QiKtag 254 (407)
T KOG1460|consen 188 PEIFNAIAEVYRQRQDL--LEVEKDLPLLQP-G----P--ADFIRLEQDVLSPLAGSKQLYAYE--TTDFWSQIKTAG 254 (407)
T ss_pred HHHHHHHHHHHHHHHhh--hhhhhcccccCC-C----c--cceEEeechhhhhhcCCCceEEEe--cccHHHHhcccc
Confidence 8866655432 1111 112233333321 1 1 112688874443322223344444 44 567888874
No 45
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.03 E-value=1.3e-08 Score=108.48 Aligned_cols=205 Identities=18% Similarity=0.196 Sum_probs=124.4
Q ss_pred CEEEEEEcCCCCccccc---cCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030 109 DVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF 184 (484)
Q Consensus 109 kvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l 184 (484)
++.+|+||||.||||.. +.||+|+|| .|+ +++++.++.+.. .| +.-+++...+..+.++++|
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi---~gk~plI~~~L~~l~~--------~G---i~~vivv~~~~~~~i~~~l 68 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPL---AGKYRLIDIPISNCIN--------SG---INKIYVLTQFNSASLNRHI 68 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEE---CCeeEEeHHHHHHHHH--------CC---CCEEEEEecCCHHHHHHHH
Confidence 68899999999999974 899999999 898 999999988853 34 6667777778899999999
Q ss_pred HHcCCCCCCCCc-EEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcc
Q psy10030 185 ERNGYFGLDPAH-VIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV 263 (484)
Q Consensus 185 ~~~~~fgl~~~~-v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~ 263 (484)
.+...++..... +..+... ....-...+.|+||.+..... .+....-++++|.++|++.
T Consensus 69 ~~~~~~~~~~~g~~~i~~~~--------------~~~~~~~~~lGTa~al~~a~~-----~l~~~~~~~~lVl~gD~l~- 128 (429)
T PRK02862 69 SQTYNFDGFSGGFVEVLAAQ--------------QTPENPSWFQGTADAVRKYLW-----HFQEWDVDEYLILSGDQLY- 128 (429)
T ss_pred hcCcCccccCCCEEEEeCCc--------------ccCCCCccccCcHHHHHHHHH-----HHHhcCCCEEEEecCCEEE-
Confidence 864222210000 1100000 000001123799998876542 3333334789999999964
Q ss_pred ccCCHHHHHHHHHcCCceEEEEEEccC-CCcccceEEEE-CCeEEEEEeccCCccccc-cc---c-----cC-CCccccc
Q psy10030 264 KVGDPTFLGYCVEQGAHCGVKVVEKIT-PGESLGVLCNV-DGKHKIVEYSELGNCSVF-ET---Q-----DQ-TGRLKFN 331 (484)
Q Consensus 264 ~~~Dp~~lg~~~~~~~~~~~~vv~k~~-~~e~~G~l~~~-~g~~~vvEyse~~~e~~~-~~---~-----~~-~g~~~f~ 331 (484)
...--.++.+|.+.++++++-+.+... .....|++... +|+ +.++.|-|..... .. + +. +-...-.
T Consensus 129 ~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~--V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~ 206 (429)
T PRK02862 129 RMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGR--ITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPY 206 (429)
T ss_pred eCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCc--EEEEEECCCccccchhcccccccccccccCCCCce
Confidence 322234778888888888776654321 12357887654 343 3334333321000 00 0 00 0000112
Q ss_pred ccceeeeeecHHHHHHHh
Q psy10030 332 LGSICNHYFSLECLQRMV 349 (484)
Q Consensus 332 ~~Ni~~~~~~l~~l~~~~ 349 (484)
..|+..++|+-+.|.++.
T Consensus 207 ~~n~Giyi~~~~vl~~~l 224 (429)
T PRK02862 207 LASMGIYVFSRDVLFDLL 224 (429)
T ss_pred EEEEEEEEEcHHHHHHHH
Confidence 568889999999887665
No 46
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.02 E-value=7.4e-09 Score=102.26 Aligned_cols=202 Identities=17% Similarity=0.160 Sum_probs=114.7
Q ss_pred EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030 111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~ 187 (484)
.+||||||.||||+. ..||+++|+ .|++++++.++.+.. .| +.-+++...+..+.+.++|.+.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi---~g~pli~~~l~~l~~--------~g---i~~v~iv~~~~~~~i~~~~~~~ 67 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYVVEEAVE--------AG---IEDILIVTGRGKRAIEDHFDTS 67 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEE---CCEEHHHHHHHHHHh--------CC---CCEEEEEeCCcHHHHHHHhccc
Confidence 479999999999975 789999999 799999999887753 34 6556666667788899998742
Q ss_pred CCCCCCCCcEEEEEcCCccccccCCccc--ccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030 188 GYFGLDPAHVIFFKQRSMPCFSLSGEIL--LETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV 265 (484)
Q Consensus 188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~--l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~ 265 (484)
..++.. + -.++.+..++.-..+. ..-.+.....|.|+|+.+..... .+ +-+.++|+++|+++...
T Consensus 68 ~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~-----~~---~~~~~lv~~gD~~~~~~ 134 (260)
T TIGR01099 68 YELEHQ---L--EKRGKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEP-----FV---GDEPFAVILGDDIVVSE 134 (260)
T ss_pred HHHHHH---H--HhhhhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHH-----hh---CCCCEEEEeccceecCC
Confidence 111000 0 0000000000000000 00001112347899997765432 12 44678999999996432
Q ss_pred --CCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEE---CCeEEEEEeccCCcccccccccCCCcccccccceeeee
Q psy10030 266 --GDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNV---DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHY 339 (484)
Q Consensus 266 --~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~---~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~ 339 (484)
.--.++-+|.++++++ +-+.... ....+.|++... ++.-.|+++.|-|..+. . .-...|++.++
T Consensus 135 ~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~--~-------~~~~~~~Giyi 204 (260)
T TIGR01099 135 EPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEE--A-------PSNLAIVGRYV 204 (260)
T ss_pred cHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCC--C-------CCceEEEEEEE
Confidence 1234677777778875 2222221 123467887653 12234555554442101 0 01246788999
Q ss_pred ecHHHHHHHh
Q psy10030 340 FSLECLQRMV 349 (484)
Q Consensus 340 ~~l~~l~~~~ 349 (484)
|+-+.+..+.
T Consensus 205 ~~~~~~~~l~ 214 (260)
T TIGR01099 205 LTPDIFDLLE 214 (260)
T ss_pred CCHHHHHHHH
Confidence 9987766653
No 47
>KOG2388|consensus
Probab=99.02 E-value=1e-10 Score=122.25 Aligned_cols=107 Identities=28% Similarity=0.485 Sum_probs=78.6
Q ss_pred CChhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc-----------cc
Q psy10030 9 VDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV-----------QV 77 (484)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~-----------~p 77 (484)
.+++.+.+|+.+|++.|++|+|||+++|||||||||+++|||+|++|++. +.+++++++.+.-.+ .-
T Consensus 77 ~~~~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~--~~slf~~qae~il~lq~~a~~~~~~~~~ 154 (477)
T KOG2388|consen 77 RGLDDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPS--GKSLFQIQAERILKLQELASMAVSDGVD 154 (477)
T ss_pred cCchhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCcc--ccchhhhhHHHHHHHHHHHhhhhccCCc
Confidence 36677777999999999999999999999999999999999999999984 565655544222221 34
Q ss_pred CCCCcccCCCCCChhhHHHHHHh---ch-----hcccCCCEEEEEEcCC
Q psy10030 78 FPPNCLSGVNTVDASTLGKYREL---GL-----KLISRGDVAVIVLAGG 118 (484)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~---G~-----~~i~~gkvavviLaGG 118 (484)
+||.+|.+..+ .+..++.++.. |+ ....+|+++++-+.|.
T Consensus 155 I~w~ImtS~~T-~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~gk 202 (477)
T KOG2388|consen 155 IPWYIMTSAFT-HEATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLDGK 202 (477)
T ss_pred eEEEEecCCCc-cHHhHhHHhhcCCCCCChhHeeeeecccccccccCCc
Confidence 68888887654 33344444421 33 3567788888877766
No 48
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.02 E-value=4.2e-08 Score=105.17 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=117.3
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
++.+|+||||.||||+...||.|+|+ .++|++++.++.+.+ .| +.-+++...+..+.+.++|.+..
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi---~g~pli~~~l~~l~~--------~g---i~~iiiv~~~~~~~i~~~~~~~~ 68 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPL---AGRPMVSWPVAAARE--------AG---AGRIVLVVGHQAEKVREHFAGDG 68 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceecee---CCccHHHHHHHHHHh--------cC---CCeEEEEECCCHHHHHHHhccCC
Confidence 57889999999999998899999999 899999998888754 23 54455555566777888876421
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC-
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD- 267 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D- 267 (484)
.+.+..|. .|.|+|+.+..... .+ +...++++|++.|+++....|
T Consensus 69 -------~i~~~~~~---------------------~~~Gt~~al~~a~~-----~l-~~~~~~vlv~~gD~p~~~~~~i 114 (459)
T PRK14355 69 -------DVSFALQE---------------------EQLGTGHAVACAAP-----AL-DGFSGTVLILCGDVPLLRAETL 114 (459)
T ss_pred -------ceEEEecC---------------------CCCCHHHHHHHHHH-----Hh-hccCCcEEEEECCccCcCHHHH
Confidence 23332332 25688886665432 22 222578999999997533333
Q ss_pred HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030 268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346 (484)
Q Consensus 268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~ 346 (484)
-.++..+...++++++.+.+..+| ...|++... +|+ ++++.|-++..-++. .....|++.++|+-+++.
T Consensus 115 ~~l~~~~~~~~~~~~v~~~~~~~~-~~~g~v~~d~~g~--v~~~~ek~~~~~~~~-------~~~~~~~Giy~~~~~~l~ 184 (459)
T PRK14355 115 QGMLAAHRATGAAVTVLTARLENP-FGYGRIVRDADGR--VLRIVEEKDATPEER-------SIREVNSGIYCVEAAFLF 184 (459)
T ss_pred HHHHHHHHhcCCcEEEEEEEcCCC-CcCCEEEEcCCCC--EEEEEEcCCCChhHh-------hccEEEEEEEEEeHHHHH
Confidence 335666666778877766666556 467886543 343 444443222100110 123568889999988765
Q ss_pred HHh
Q psy10030 347 RMV 349 (484)
Q Consensus 347 ~~~ 349 (484)
+.+
T Consensus 185 ~~l 187 (459)
T PRK14355 185 DAI 187 (459)
T ss_pred HHH
Confidence 544
No 49
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=1.1e-08 Score=100.51 Aligned_cols=169 Identities=24% Similarity=0.329 Sum_probs=122.6
Q ss_pred EEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHHc
Q psy10030 112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 112 vviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~~ 187 (484)
.||||||.||||. ...||.++|| -+||++++-++.+.. -| |. +.|.++..+....++++.+.
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV---~~KPmi~y~l~~L~~--------aG---I~dI~II~~~~~~~~~~~llGdg 68 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPV---YDKPMIYYPLETLML--------AG---IRDILIVVGPEDKPTFKELLGDG 68 (286)
T ss_pred cEEecCcCccccccccccCCccccee---cCcchhHhHHHHHHH--------cC---CceEEEEecCCchhhhhhhhcCc
Confidence 5899999999986 4899999999 999999999998864 24 44 45556666788889999998
Q ss_pred CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030 188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD 267 (484)
Q Consensus 188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D 267 (484)
+.||++ +++-.|+. |.|=+.++..-. ++ .|-+-+.++-+||++-. .-
T Consensus 69 s~~gv~---itY~~Q~~---------------------p~GlA~Av~~a~------~f--v~~~~f~l~LGDNi~~~-~l 115 (286)
T COG1209 69 SDFGVD---ITYAVQPE---------------------PDGLAHAVLIAE------DF--VGDDDFVLYLGDNIFQD-GL 115 (286)
T ss_pred cccCcc---eEEEecCC---------------------CCcHHHHHHHHH------hh--cCCCceEEEecCceecc-Ch
Confidence 999966 77667766 889888887443 33 46688899999999865 44
Q ss_pred HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCe-EEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030 268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGK-HKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL 342 (484)
Q Consensus 268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~-~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l 342 (484)
..++-.+.+.+.+..+-+.+..+| +++||+... +|+ ..++|=-+.|+. +++=+..++|+-
T Consensus 116 ~~~~~~~~~~~~ga~i~~~~V~dP-~rfGV~e~d~~~~v~~l~EKP~~P~S--------------NlAvtGlY~~d~ 177 (286)
T COG1209 116 SELLEHFAEEGSGATILLYEVDDP-SRYGVVEFDEDGKVIGLEEKPKEPKS--------------NLAVTGLYFYDP 177 (286)
T ss_pred HHHHHHHhccCCCcEEEEEEcCCc-ccceEEEEcCCCcEEEeEECCCCCCC--------------ceeEEEEEEeCh
Confidence 556666666566666666666666 588998766 564 345564444443 344456667764
No 50
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.00 E-value=1.7e-08 Score=99.55 Aligned_cols=190 Identities=21% Similarity=0.189 Sum_probs=117.0
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
+|+||||.||||+. +.||+|+|| .+++++++.++.+.. .| +.-++....+..+.+++|+++..
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv---~~~p~i~~~~~~~~~--------~g---i~~i~iv~~~~~~~i~~~~~~~~ 66 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEI---GGRPILWHIMKIYSH--------YG---HNDFILCLGYKGHVIKEYFLNYF 66 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEE---CCEEHHHHHHHHHHh--------CC---CceEEEECCCCHHHHHHHHHhhh
Confidence 48999999999974 789999999 899999987777753 34 77777788889999999998864
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcc----eeccCCCchHhHHHhhcChHHHHHHcCC-eEEEEEeCCCCcc
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRV----ARSPDGHGGLYHALGATGILDTMHTRGI-KHIHVYCVDNILV 263 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i----~~~P~G~Ggi~~~L~~~G~l~~l~~~G~-~~i~v~~vDN~l~ 263 (484)
.+|.+ +.+-.|..--.+... ..+++.+ ...|.|+||.+....+. .+. ++++|++.|++..
T Consensus 67 ~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~t~~al~~a~~~--------~~~~~~~lv~~gD~i~~ 131 (253)
T cd02524 67 LHNSD---VTIDLGTNRIELHNS----DIEDWKVTLVDTGLNTMTGGRLKRVRRY--------LGDDETFMLTYGDGVSD 131 (253)
T ss_pred hhcCc---eeEeecccceeeecc----cccccceeecccCcccccHHHHHHHHHh--------cCCCCeEEEEcCCEEEC
Confidence 44422 222111100000000 0001111 12367888876644321 233 7899999999863
Q ss_pred ccCCHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030 264 KVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL 342 (484)
Q Consensus 264 ~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l 342 (484)
..--.++-+|...++++++.++. +....|++... +| +|.++.+-+.. . -...|++.++|+-
T Consensus 132 -~dl~~ll~~h~~~~~~~tl~~~~---~~~~~g~v~~d~~g--~V~~~~ekp~~--~----------~~~i~~Giyi~~~ 193 (253)
T cd02524 132 -VNINALIEFHRSHGKLATVTAVH---PPGRFGELDLDDDG--QVTSFTEKPQG--D----------GGWINGGFFVLEP 193 (253)
T ss_pred -CCHHHHHHHHHHcCCCEEEEEec---CCCcccEEEECCCC--CEEEEEECCCC--C----------CceEEEEEEEECH
Confidence 33344677777888888876653 33467886543 34 34444433221 0 0135677889987
Q ss_pred HHHHHH
Q psy10030 343 ECLQRM 348 (484)
Q Consensus 343 ~~l~~~ 348 (484)
+.++.+
T Consensus 194 ~l~~~l 199 (253)
T cd02524 194 EVFDYI 199 (253)
T ss_pred HHHHhh
Confidence 766444
No 51
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=98.97 E-value=2.3e-08 Score=101.73 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=118.4
Q ss_pred EEEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030 110 VAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER 186 (484)
Q Consensus 110 vavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~ 186 (484)
+.+|+||||.||||+. ..||.++|+ .|++++++.++.+.. .| +--++....+..+.+.++|..
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv---~g~pii~~~l~~l~~--------~g---i~~i~vv~~~~~~~i~~~~~~ 74 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIA--------AG---ITEIVLVTHSSKNSIENHFDT 74 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEeCCCHHHHHHHHcc
Confidence 5689999999999975 799999999 899999999988864 34 666777778888999999975
Q ss_pred cCCCC--CCCC-cEEEEEcCCccccccCCcccccC----CCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCC
Q psy10030 187 NGYFG--LDPA-HVIFFKQRSMPCFSLSGEILLET----RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVD 259 (484)
Q Consensus 187 ~~~fg--l~~~-~v~~f~Q~~~P~~~~~g~~~l~~----~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vD 259 (484)
...++ +.+. +..+ .++ -..+.+. .......|.|+|+++..... + .+-+.++|+++|
T Consensus 75 ~~~~~~~l~~~~~~~~-~~e--------~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~------~--~~~~~~lVl~gD 137 (302)
T PRK13389 75 SFELEAMLEKRVKRQL-LDE--------VQSICPPHVTIMQVRQGLAKGLGHAVLCAHP------V--VGDEPVAVILPD 137 (302)
T ss_pred chhhhhhhhhhhhhHH-HHh--------hhhccccCceEEEeecCCCCChHHHHHHHHH------H--cCCCCEEEEeCc
Confidence 32221 1100 0000 000 0000000 01112457899998775432 2 233568999999
Q ss_pred CCcc------ccCC-HHHHHHHHHcCCceEEEEEEccCCCcccceEEEEC-----Ce-EEEEEeccCCcccccccccCCC
Q psy10030 260 NILV------KVGD-PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVD-----GK-HKIVEYSELGNCSVFETQDQTG 326 (484)
Q Consensus 260 N~l~------~~~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~-----g~-~~vvEyse~~~e~~~~~~~~~g 326 (484)
|++. ...| -.++.+|.+.+++ ++-+.+.. ...++|++...+ |+ -.++++-|-|..+...
T Consensus 138 ~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~-~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~------ 209 (302)
T PRK13389 138 VILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVA-DVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAP------ 209 (302)
T ss_pred ceecccccccccccHHHHHHHHHhcCCC-EEEEEEcc-cCCcceEEEecCcccccCCcceEEEEEECCCCCCCC------
Confidence 9862 1123 3477778777776 44455544 345789987542 21 2344554444320000
Q ss_pred cccccccceeeeeecHHHHH
Q psy10030 327 RLKFNLGSICNHYFSLECLQ 346 (484)
Q Consensus 327 ~~~f~~~Ni~~~~~~l~~l~ 346 (484)
-+..|+..++|+-+.++
T Consensus 210 ---s~~~~~GiYi~~~~il~ 226 (302)
T PRK13389 210 ---SNLAIVGRYVLSADIWP 226 (302)
T ss_pred ---ccEEEEEEEEECHHHHH
Confidence 02468889999987663
No 52
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.97 E-value=1.8e-08 Score=108.75 Aligned_cols=183 Identities=18% Similarity=0.158 Sum_probs=114.8
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHHHc
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~~~ 187 (484)
.+++|+||||.||||+.+.||.|+|+ .++|++++.++.+.+ .| + .+++.++ +..+.+.+++++.
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi---~gkpli~~~l~~l~~--------~g---~~~iivvv~-~~~~~i~~~~~~~ 68 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTL---AGRSMLGHVLHAAAG--------LA---PQHLVVVVG-HDRERVAPAVAEL 68 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceecee---CCccHHHHHHHHHHh--------cC---CCcEEEEEC-CCHHHHHHHhhcc
Confidence 57889999999999998899999999 899999999998864 23 4 4445444 5567787777642
Q ss_pred CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030 188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD 267 (484)
Q Consensus 188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D 267 (484)
+. .+.+..| ..|.|+|+.+.+... .+.+..-++++|+++|+++....+
T Consensus 69 ---~~---~~~~~~~---------------------~~~~Gt~~si~~al~-----~l~~~~~~~vlV~~gD~P~~~~~~ 116 (482)
T PRK14352 69 ---AP---EVDIAVQ---------------------DEQPGTGHAVQCALE-----ALPADFDGTVVVTAGDVPLLDGET 116 (482)
T ss_pred ---CC---ccEEEeC---------------------CCCCCcHHHHHHHHH-----HhccCCCCeEEEEeCCeeccCHHH
Confidence 11 1222222 236788775543322 222223578999999998532222
Q ss_pred H-HHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeE-EEEEeccCCcccccccccCCCcccccccceeeeeecHHH
Q psy10030 268 P-TFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKH-KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLEC 344 (484)
Q Consensus 268 p-~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~-~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~ 344 (484)
. .++-.+...+.++++.+.+..+| ..+|.+... +|+. .++|..+.+.. + +..+..|++.++|+-+.
T Consensus 117 l~~li~~~~~~~~~~~v~~~~~~~p-~~yg~~~~~~~g~V~~~~EKp~~~~~---~-------~~~~~~~~Giy~f~~~~ 185 (482)
T PRK14352 117 LADLVATHTAEGNAVTVLTTTLDDP-TGYGRILRDQDGEVTAIVEQKDATPS---Q-------RAIREVNSGVYAFDAAV 185 (482)
T ss_pred HHHHHHHHHhcCCeEEEEEeecCCC-CCCCEEEECCCCCEEEEEECCCCCHH---H-------hhcceEEEEEEEEEHHH
Confidence 2 24555555677766655555544 467877653 4543 34444333222 0 11234688899999988
Q ss_pred HHHHh
Q psy10030 345 LQRMV 349 (484)
Q Consensus 345 l~~~~ 349 (484)
|.++.
T Consensus 186 l~~~~ 190 (482)
T PRK14352 186 LRSAL 190 (482)
T ss_pred HHHHH
Confidence 87765
No 53
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=98.93 E-value=3.5e-08 Score=95.07 Aligned_cols=178 Identities=20% Similarity=0.218 Sum_probs=109.0
Q ss_pred EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHHcCCC
Q psy10030 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFERNGYF 190 (484)
Q Consensus 112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~~~~f 190 (484)
+|+||||.||||+...||.++|+ .|+|++++.++.+.. .| +. .+|.++ +.++.+.+++.+ +
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v---~gkpli~~~i~~l~~--------~~---i~~i~iv~~-~~~~~i~~~~~~---~ 62 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVLDAARA--------LG---PDRIVVVVG-HGAEQVKKALAN---P 62 (229)
T ss_pred CEEEeCCCCccCCCCCChhccee---CCccHHHHHHHHHHh--------CC---CCeEEEEEC-CCHHHHHHHhCC---C
Confidence 48999999999998889999999 899999998888754 23 33 445554 447778777764 2
Q ss_pred CCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH-H
Q psy10030 191 GLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP-T 269 (484)
Q Consensus 191 gl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp-~ 269 (484)
+ +.++.|. .+.|+++....... .+ +.+.+++++++.|+++....+- .
T Consensus 63 ~-----~~~~~~~---------------------~~~g~~~ai~~a~~-----~~-~~~~~~vli~~~D~p~~~~~~i~~ 110 (229)
T cd02540 63 N-----VEFVLQE---------------------EQLGTGHAVKQALP-----AL-KDFEGDVLVLYGDVPLITPETLQR 110 (229)
T ss_pred C-----cEEEECC---------------------CCCCCHHHHHHHHH-----hh-ccCCCeEEEEeCCccccCHHHHHH
Confidence 3 3333332 13577776554322 22 2236889999999975321111 1
Q ss_pred HHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHHH
Q psy10030 270 FLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM 348 (484)
Q Consensus 270 ~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~~ 348 (484)
++..+.+.++++++-+.+..+| ...|.+... +|+ ++++.+-+....++ ......|++.++|+.+.+.+.
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~--v~~~~ek~~~~~~~-------~~~~~~~~giy~~~~~~~~~~ 180 (229)
T cd02540 111 LLEAHREAGADVTVLTAELEDP-TGYGRIIRDGNGK--VLRIVEEKDATEEE-------KAIREVNAGIYAFDAEFLFEA 180 (229)
T ss_pred HHHHHHhcCCcEEEEEEEcCCC-CCccEEEEcCCCC--EEEEEECCCCChHH-------HhhceEEeEEEEEEHHHHHHH
Confidence 3344455567787777776666 456776544 354 33433322110001 011356888999998766554
Q ss_pred h
Q psy10030 349 V 349 (484)
Q Consensus 349 ~ 349 (484)
.
T Consensus 181 l 181 (229)
T cd02540 181 L 181 (229)
T ss_pred H
Confidence 4
No 54
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=98.92 E-value=2.9e-08 Score=94.41 Aligned_cols=139 Identities=17% Similarity=0.246 Sum_probs=93.1
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~ 187 (484)
+|+||||.||||.. +.||+|+|| .|+ |++++.++.+.. .| +--+++...+..+.+.++|.+.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~--------~g---i~~iivv~~~~~~~i~~~~~~~ 66 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPF---GGRYRLIDFPLSNMVN--------SG---IRNVGVLTQYKSRSLNDHLGSG 66 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEE---CCeeeeHHHHHHHHHH--------CC---CCEEEEEeCCChHHHHHHHhCC
Confidence 48999999999973 799999999 888 999999888864 34 5555555567789999999876
Q ss_pred CCCCCCC--CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030 188 GYFGLDP--AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV 265 (484)
Q Consensus 188 ~~fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~ 265 (484)
..++++. ..+..... .....+..|.|+|+.+..... .+....-+.++|.++|++. ..
T Consensus 67 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~gD~v~-~~ 125 (200)
T cd02508 67 KEWDLDRKNGGLFILPP---------------QQRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSGDHIY-NM 125 (200)
T ss_pred CcccCCCCCCCEEEeCc---------------ccCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecCCEEE-ec
Confidence 6666541 11211110 000023457899998876543 2333345789999999963 33
Q ss_pred CCHHHHHHHHHcCCceEEEE
Q psy10030 266 GDPTFLGYCVEQGAHCGVKV 285 (484)
Q Consensus 266 ~Dp~~lg~~~~~~~~~~~~v 285 (484)
.--.++.+|.+++.++++-+
T Consensus 126 ~~~~~l~~~~~~~~~~t~~~ 145 (200)
T cd02508 126 DYREMLDFHIESGADITVVY 145 (200)
T ss_pred CHHHHHHHHHHcCCCEEEEE
Confidence 33346777777777665533
No 55
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=98.92 E-value=3.6e-08 Score=97.87 Aligned_cols=196 Identities=17% Similarity=0.196 Sum_probs=112.4
Q ss_pred EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030 111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~ 187 (484)
.+||||||.||||+. ..||+++|| .|++++++.++.+.+ .| +.-+++...+..+.+.++|...
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv---~gkpli~~~l~~l~~--------~g---i~~i~iv~~~~~~~i~~~~~~~ 67 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPVIQYIVEEAVA--------AG---IEDIIIVTGRGKRAIEDHFDRS 67 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEE---CCEEHHHHHHHHHHH--------CC---CCEEEEEeCCchHHHHHHhCCc
Confidence 479999999999974 789999999 799999999988863 34 6566666777888899888642
Q ss_pred CCCCCCCCcEEEEEcC----Cccccc--cCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCC
Q psy10030 188 GYFGLDPAHVIFFKQR----SMPCFS--LSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNI 261 (484)
Q Consensus 188 ~~fgl~~~~v~~f~Q~----~~P~~~--~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~ 261 (484)
. .++. ++ .+. .+|-+. ..+ +.-....+..|.|+|+.+..... .. +.+.++|+++|++
T Consensus 68 ~--~~~~-~~---~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~Gt~~al~~~~~------~i--~~~~~lv~~gD~~ 130 (267)
T cd02541 68 Y--ELEE-TL---EKKGKTDLLEEVRIISDL---ANIHYVRQKEPLGLGHAVLCAKP------FI--GDEPFAVLLGDDL 130 (267)
T ss_pred H--HHHH-HH---HhcccHHHhhhhhcccCC---ceEEEEEcCCCCChHHHHHHHHH------Hh--CCCceEEEECCeE
Confidence 1 1100 00 000 000000 000 00001123447899888765543 12 2267899999998
Q ss_pred ccccCC---HHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEEC--C-eEEEEEeccCCcccccccccCCCcccccccc
Q psy10030 262 LVKVGD---PTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNVD--G-KHKIVEYSELGNCSVFETQDQTGRLKFNLGS 334 (484)
Q Consensus 262 l~~~~D---p~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~~--g-~~~vvEyse~~~e~~~~~~~~~g~~~f~~~N 334 (484)
+. ..| -.++..|...++++ +-+.... ....+.|++...+ | ...|.++.|-|..+. . .-...|
T Consensus 131 ~~-~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~-----~----~~~~~~ 199 (267)
T cd02541 131 ID-SKEPCLKQLIEAYEKTGASV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEE-----A----PSNLAI 199 (267)
T ss_pred Ee-CCchHHHHHHHHHHHhCCCE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCC-----C----CCceEE
Confidence 63 222 24677776666664 2222221 1234678876542 2 234555554433200 0 012457
Q ss_pred eeeeeecHHHHHHH
Q psy10030 335 ICNHYFSLECLQRM 348 (484)
Q Consensus 335 i~~~~~~l~~l~~~ 348 (484)
++.++|+-+.+..+
T Consensus 200 ~Giyi~~~~~~~~l 213 (267)
T cd02541 200 VGRYVLTPDIFDIL 213 (267)
T ss_pred EEEEEcCHHHHHHH
Confidence 88899998876655
No 56
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=98.90 E-value=2.5e-08 Score=99.96 Aligned_cols=192 Identities=18% Similarity=0.175 Sum_probs=118.4
Q ss_pred EEEEEcCCCCcccc----ccCCCccccccCCCC-CcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030 111 AVIVLAGGQGTRLG----ADYPKGMYNIGLPSG-KSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE 185 (484)
Q Consensus 111 avviLaGG~GTRLG----~~~PKg~~~i~l~~~-~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~ 185 (484)
.+||||||.||||. ...||.++|+ .| +|++|+.++++..+. + .-.++|+|+....+.+.++++
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l---~g~~~li~~~l~~l~~~~-------~--~~~i~vvt~~~~~~~v~~~l~ 69 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKL---FGDKSLLQQTLDRLKGLV-------P--PDRILVVTNEEYRFLVREQLP 69 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEc---CCCCcHHHHHHHHHhcCC-------C--CCcEEEEechHHHHHHHHHHh
Confidence 47999999999995 4789999999 56 999999999886421 1 126777787666667777776
Q ss_pred HcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc-CCeEEEEEeCCCCccc
Q psy10030 186 RNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR-GIKHIHVYCVDNILVK 264 (484)
Q Consensus 186 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~-G~~~i~v~~vDN~l~~ 264 (484)
+ .+ . .+.++. +..+.|+++....... .+.++ +-++++|++.|.++..
T Consensus 70 ~---~~-~--~~~ii~---------------------ep~~~gTa~ai~~a~~-----~~~~~~~~~~vlVl~~D~~i~~ 117 (274)
T cd02509 70 E---GL-P--EENIIL---------------------EPEGRNTAPAIALAAL-----YLAKRDPDAVLLVLPSDHLIED 117 (274)
T ss_pred h---cC-C--CceEEE---------------------CCCCCCcHHHHHHHHH-----HHHhcCCCCeEEEecchhcccC
Confidence 5 11 1 122222 2336789887765432 22222 3578999999998531
Q ss_pred cCCH-HHHHHHH---HcCCceEEEEEEccCCCcccceEEEECC----eEEEEEeccCCcccccccccCCCccccccccee
Q psy10030 265 VGDP-TFLGYCV---EQGAHCGVKVVEKITPGESLGVLCNVDG----KHKIVEYSELGNCSVFETQDQTGRLKFNLGSIC 336 (484)
Q Consensus 265 ~~Dp-~~lg~~~---~~~~~~~~~vv~k~~~~e~~G~l~~~~g----~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~ 336 (484)
..+- ..+-.+. +.+..+++-+.+. .|...+|.+...+. -..|..+.|-|+...++..-.+|. ...|..
T Consensus 118 ~~~f~~~l~~~~~~~~~~~~vt~gi~p~-~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~---~~wNsG 193 (274)
T cd02509 118 VEAFLKAVKKAVEAAEEGYLVTFGIKPT-RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGN---YLWNSG 193 (274)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeeec-CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCC---eEEECc
Confidence 1111 1232222 2567777777765 47778899876422 235666666665422221111121 256899
Q ss_pred eeeecHHHHHHHhh
Q psy10030 337 NHYFSLECLQRMVK 350 (484)
Q Consensus 337 ~~~~~l~~l~~~~~ 350 (484)
+++|+.+.+.+.++
T Consensus 194 iyi~~~~~l~~~l~ 207 (274)
T cd02509 194 IFLFRAKTFLEELK 207 (274)
T ss_pred eeeeeHHHHHHHHH
Confidence 99999987766654
No 57
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.88 E-value=6.7e-08 Score=102.98 Aligned_cols=181 Identities=17% Similarity=0.183 Sum_probs=112.7
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
++.+|+||||.||||+.+.||.++|+ .|+|++++.++.+.. .| +.-+++...+.++.+.+++.+
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~--------~g---i~~ivvv~~~~~~~i~~~~~~-- 68 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVLHPV---AGRPMLAHVLAAAAS--------LG---PSRVAVVVGPGAEAVAAAAAK-- 68 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcccCEE---CCchHHHHHHHHHHh--------CC---CCcEEEEECCCHHHHHHHhhc--
Confidence 67899999999999998889999999 899999999988864 23 444454555667778887754
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
++. ++.++.|+ .|.|+++.+.+.. +.+ ..+.++++|++.|.++. ++
T Consensus 69 -~~~---~~~~~~~~---------------------~~~G~~~sl~~a~-----~~l-~~~~~~~lv~~~D~P~i---~~ 114 (446)
T PRK14353 69 -IAP---DAEIFVQK---------------------ERLGTAHAVLAAR-----EAL-AGGYGDVLVLYGDTPLI---TA 114 (446)
T ss_pred -cCC---CceEEEcC---------------------CCCCcHHHHHHHH-----HHH-hccCCCEEEEeCCcccC---CH
Confidence 221 12222221 2567766555432 222 23457899999999753 44
Q ss_pred HHHHHH---HHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030 269 TFLGYC---VEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL 345 (484)
Q Consensus 269 ~~lg~~---~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l 345 (484)
..+-.+ .+.+.+.++.+.+..++ .++|.+...+|+ ++++.|-++. .... ..-...|++.++|+.+.+
T Consensus 115 ~~l~~l~~~~~~~~~~~i~~~~~~~~-~~~g~~~~~~g~--v~~~~ek~~~-~~~~------~~~~~~~~Giy~~~~~~l 184 (446)
T PRK14353 115 ETLARLRERLADGADVVVLGFRAADP-TGYGRLIVKGGR--LVAIVEEKDA-SDEE------RAITLCNSGVMAADGADA 184 (446)
T ss_pred HHHHHHHHhHhcCCcEEEEEEEeCCC-CcceEEEECCCe--EEEEEECCCC-ChHH------hhceEEEEEEEEEEHHHH
Confidence 444333 24567777777765544 467877665554 4454443322 1000 001245778889988766
Q ss_pred HHHh
Q psy10030 346 QRMV 349 (484)
Q Consensus 346 ~~~~ 349 (484)
.++.
T Consensus 185 ~~~l 188 (446)
T PRK14353 185 LALL 188 (446)
T ss_pred HHHH
Confidence 4443
No 58
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.84 E-value=9.1e-08 Score=93.56 Aligned_cols=183 Identities=18% Similarity=0.180 Sum_probs=110.6
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
|+++|+||||.++||+ +|.++|+ .|+|++++.++.+... | +..+++.+. ++.+.+++.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i---~Gkpll~~~l~~l~~~--------~---i~~ivvv~~--~~~i~~~~~~-- 60 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADI---GGKPMIVRVYERASKA--------G---ADRVVVATD--DERIADAVEA-- 60 (245)
T ss_pred ceEEEEecCCCCCCCC---CCccccc---CCcCHHHHHHHHHHhc--------C---CCeEEEECC--cHHHHHHHHH--
Confidence 5789999999999995 7999999 8999999999988642 3 555566553 4778888864
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
+|.+ +.+..| ..+.|++++..++.. +...+.++++++++|+++. ++
T Consensus 61 -~~~~---v~~~~~---------------------~~~~gt~~~~~~~~~------~~~~~~~~vlv~~~D~Pli---~~ 106 (245)
T PRK05450 61 -FGGE---VVMTSP---------------------DHPSGTDRIAEAAAK------LGLADDDIVVNVQGDEPLI---PP 106 (245)
T ss_pred -cCCE---EEECCC---------------------cCCCchHHHHHHHHh------cCCCCCCEEEEecCCCCCC---CH
Confidence 3422 221111 225677776654332 2112357899999999863 44
Q ss_pred HHH----HHHHHcCCceEEEEEEccC-----CCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeee
Q psy10030 269 TFL----GYCVEQGAHCGVKVVEKIT-----PGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHY 339 (484)
Q Consensus 269 ~~l----g~~~~~~~~~~~~vv~k~~-----~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~ 339 (484)
..+ ..+..++.++.+-++++.+ ..+.+|++...+|+. +++.+-+.-...+..+ +....-...|++.+.
T Consensus 107 ~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v--~~~~e~~~~~~~~~~~-~~~~~~~~~~~Giy~ 183 (245)
T PRK05450 107 EIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRA--LYFSRAPIPYGRDAFA-DSAPTPVYRHIGIYA 183 (245)
T ss_pred HHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcE--EEecCCCCCCCCCccc-cccCccccEEEEEEe
Confidence 444 3333346777776766622 223456553334443 4555443210110000 000122468999999
Q ss_pred ecHHHHHHHh
Q psy10030 340 FSLECLQRMV 349 (484)
Q Consensus 340 ~~l~~l~~~~ 349 (484)
|+-+.++.+.
T Consensus 184 ~~~~~l~~~~ 193 (245)
T PRK05450 184 YRRGFLRRFV 193 (245)
T ss_pred cCHHHHHHHH
Confidence 9998888876
No 59
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.79 E-value=1.5e-07 Score=97.65 Aligned_cols=197 Identities=19% Similarity=0.281 Sum_probs=118.6
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCC-cHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGK-SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~-s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~ 187 (484)
+|+||||.||||+. +.||+|+|+ .|+ +++++.++.+.. .| +.-+++...+..+.+.++|.+.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~--------~g---i~~i~iv~~~~~~~i~~~~~~~ 66 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPF---GGKYRIIDFPLSNCIN--------SG---IRRIGVLTQYKSHSLNRHIQRG 66 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccccee---cceeeEeeehhhhhhh--------cC---CceEEEEeccChHHHHHHHHhc
Confidence 48999999999975 789999999 888 799999888864 34 6666777778888899999853
Q ss_pred CCCCCCC---CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030 188 GYFGLDP---AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK 264 (484)
Q Consensus 188 ~~fgl~~---~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~ 264 (484)
+++.. ..+.++.... .......|.|+|+.+.... +.+....-++++|+++|++. .
T Consensus 67 --~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Gt~~al~~a~-----~~~~~~~~~~~lv~~gD~l~-~ 124 (361)
T TIGR02091 67 --WDFDGFIDGFVTLLPAQQ--------------RESGTDWYQGTADAVYQNL-----DLIEDYDPEYVLILSGDHIY-K 124 (361)
T ss_pred --cCccCccCCCEEEeCCcc--------------cCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCCEEE-c
Confidence 33321 1121111000 0011234689988776432 22222334789999999964 3
Q ss_pred cCCHHHHHHHHHcCCceEEEEEEcc-CCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030 265 VGDPTFLGYCVEQGAHCGVKVVEKI-TPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE 343 (484)
Q Consensus 265 ~~Dp~~lg~~~~~~~~~~~~vv~k~-~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~ 343 (484)
..-..++-.|..++.++++-+.+.. ...+.+|++...+ .-.+.++.+-+.. .. +..+.......|++.+.|+-+
T Consensus 125 ~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~-~~~v~~~~ekp~~-~~---~~~~~~~~~~~~~Giyi~~~~ 199 (361)
T TIGR02091 125 MDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDE-DGRIVDFEEKPAN-PP---SIPGMPDFALASMGIYIFDKD 199 (361)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECC-CCCEEEEEECCCC-cc---cccccccccEEeeeEEEEcHH
Confidence 2223466777777777665554432 1234678877543 2234555543321 10 001111123578999999988
Q ss_pred HHHHHh
Q psy10030 344 CLQRMV 349 (484)
Q Consensus 344 ~l~~~~ 349 (484)
.|.++.
T Consensus 200 ~l~~~l 205 (361)
T TIGR02091 200 VLKELL 205 (361)
T ss_pred HHHHHH
Confidence 875543
No 60
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=98.78 E-value=5.1e-07 Score=87.95 Aligned_cols=182 Identities=17% Similarity=0.170 Sum_probs=108.6
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
++.+|+||||.++||+ ||.++++ .|+|++++.++++++. -| +.-+++.+. ++.+.+++.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i---~gkpll~~~l~~l~~~-------~~---i~~ivvv~~--~~~i~~~~~~-- 60 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADI---AGKPMIQHVYERAKKA-------KG---LDEVVVATD--DERIADAVES-- 60 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCccc---CCcCHHHHHHHHHHhC-------CC---CCEEEEECC--cHHHHHHHHH--
Confidence 4678999999999996 7999999 8999999999988641 03 666666654 4788888865
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
++++ + ..+. ...+.|+|++..++.. + ....++++++++|+++....+.
T Consensus 61 -~~~~---~--~~~~-------------------~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~Pli~~~~l 108 (239)
T cd02517 61 -FGGK---V--VMTS-------------------PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEPLIPPEMI 108 (239)
T ss_pred -cCCE---E--EEcC-------------------cccCchhHHHHHHHHh------c-CCCCCEEEEecCCCCCCCHHHH
Confidence 3322 2 1111 1225678776665421 2 1124789999999986422221
Q ss_pred -HHHHHHHHc-CCceEEEEEEccCCC-----cccceEEEECCeEEEEEeccCC-cccccccccCCCcccccccceeeeee
Q psy10030 269 -TFLGYCVEQ-GAHCGVKVVEKITPG-----ESLGVLCNVDGKHKIVEYSELG-NCSVFETQDQTGRLKFNLGSICNHYF 340 (484)
Q Consensus 269 -~~lg~~~~~-~~~~~~~vv~k~~~~-----e~~G~l~~~~g~~~vvEyse~~-~e~~~~~~~~~g~~~f~~~Ni~~~~~ 340 (484)
.++-.+... +.++++-+++..++. +.+|++...+| .+.++.+-+ ++ .+...+. .-...|++++.|
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~v~~~~~~~~~~-~~~~~~~----~~~~~~~Giy~~ 181 (239)
T cd02517 109 DQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDG--YALYFSRSPIPY-PRDSSED----FPYYKHIGIYAY 181 (239)
T ss_pred HHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCC--CEEEecCCCCCC-CCCCCCC----CceeEEEEEEEE
Confidence 133333334 567776677654433 12233333345 344554321 11 1110010 113679999999
Q ss_pred cHHHHHHHh
Q psy10030 341 SLECLQRMV 349 (484)
Q Consensus 341 ~l~~l~~~~ 349 (484)
+-+.++.+.
T Consensus 182 ~~~~~~~~~ 190 (239)
T cd02517 182 RRDFLLRFA 190 (239)
T ss_pred CHHHHHHHH
Confidence 999888775
No 61
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=98.77 E-value=2.1e-07 Score=90.02 Aligned_cols=173 Identities=18% Similarity=0.197 Sum_probs=108.6
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
+||||||.||||+. ..||+++|+ .|+|++++.++.+.. .| +.-+++...+..+.+.+++.+.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~---~g~~li~~~l~~l~~--------~g---i~~i~vv~~~~~~~~~~~~~~~- 65 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEI---NGKPLLERQIETLKE--------AG---IDDIVIVTGYKKEQIEELLKKY- 65 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeE---CCEEHHHHHHHHHHH--------CC---CceEEEEeccCHHHHHHHHhcc-
Confidence 48999999999975 579999999 899999998888753 24 6666666677788888888753
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
+| +.+..+.. +.+.|+++.+.+... .+ -++++|+++|++. ++
T Consensus 66 -~~-----~~~~~~~~-------------------~~~~g~~~s~~~~~~-----~~----~~~~lv~~~D~~~----~~ 107 (229)
T cd02523 66 -PN-----IKFVYNPD-------------------YAETNNIYSLYLARD-----FL----DEDFLLLEGDVVF----DP 107 (229)
T ss_pred -CC-----eEEEeCcc-------------------hhhhCcHHHHHHHHH-----Hc----CCCEEEEeCCEec----CH
Confidence 22 32222221 225677766554332 22 3789999999973 56
Q ss_pred HHHHHHHHcCCceEEEEEEccCCC-cccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030 269 TFLGYCVEQGAHCGVKVVEKITPG-ESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR 347 (484)
Q Consensus 269 ~~lg~~~~~~~~~~~~vv~k~~~~-e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~ 347 (484)
.++-.+.+.+.+.++-+.+...+. ..+++.. .++ -.+++..+.+.. .. .....|++.+.|+-+.++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~k~~~-~~---------~~~~~~~Giy~~~~~~~~~ 175 (229)
T cd02523 108 SILERLLSSPADNAILVDKKTKEWEDEYVKDL-DDA-GVLLGIISKAKN-LE---------EIQGEYVGISKFSPEDADR 175 (229)
T ss_pred HHHHHHHcCCCCCeEEEccCcccccccceeee-cCc-cceEeecccCCC-cc---------hhceEEEeEEEECHHHHHH
Confidence 778888888888877666522121 2223221 221 122222222211 00 1124678888999888776
Q ss_pred Hh
Q psy10030 348 MV 349 (484)
Q Consensus 348 ~~ 349 (484)
+.
T Consensus 176 l~ 177 (229)
T cd02523 176 LA 177 (229)
T ss_pred HH
Confidence 65
No 62
>PLN02830 UDP-sugar pyrophosphorylase
Probab=98.76 E-value=5e-09 Score=114.93 Aligned_cols=103 Identities=22% Similarity=0.306 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc------------ccC
Q psy10030 11 ASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV------------QVF 78 (484)
Q Consensus 11 ~~~~~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~------------~p~ 78 (484)
.....+|++.|+++| |+|||++||||||||||.++|||++++++. .++++.++...+...+ ..+
T Consensus 112 ~~~~~~~~~~Gl~~l--~kvavllLaGGlGTRLG~~~pK~~lpv~~~--~gkt~lql~~e~I~~lq~la~~~~~~~~~~I 187 (615)
T PLN02830 112 SEEFVELEEAGLREA--GNAAFVLVAGGLGERLGYSGIKVALPTETA--TGTCYLQLYIESILALQERAKKRKAKKGRKI 187 (615)
T ss_pred chhhhHHHHHHHHHh--CcEEEEEecCCcccccCCCCCCcceecccC--CCCcHHHHHHHHHHHHHHHHHHhcccCCCCc
Confidence 345578999999999 899999999999999999999999999874 4555555444333222 347
Q ss_pred CCCcccCCCCCChhhHHHHHHhc--------hhcccCCCEEEEEEcCC
Q psy10030 79 PPNCLSGVNTVDASTLGKYRELG--------LKLISRGDVAVIVLAGG 118 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~G--------~~~i~~gkvavviLaGG 118 (484)
|+..|.|..+ ..+...-+++.. +..+.|+++.++.-..|
T Consensus 188 Pl~IMTS~~T-~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g 234 (615)
T PLN02830 188 PLVIMTSDDT-HARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDA 234 (615)
T ss_pred eEEEECCcch-hHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCC
Confidence 8888888754 333444444432 33456777777765433
No 63
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.76 E-value=2e-07 Score=99.72 Aligned_cols=178 Identities=17% Similarity=0.202 Sum_probs=107.2
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHHHHc
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l~~~ 187 (484)
++.+|+||||.||||+...||.++|+ .|+|++++.++.+.. .| +. .++.+ .+..+.+++++...
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i---~gkpli~~~i~~l~~--------~g---i~~i~vv~-~~~~~~i~~~~~~~ 69 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTL---AGKPMVQHVIDAANE--------LG---AQHVHLVY-GHGGDLLKQTLADE 69 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhccee---CChhHHHHHHHHHHh--------cC---CCcEEEEE-CCCHHHHHHhhccC
Confidence 58899999999999998899999999 899999999888753 23 43 44444 45666677666431
Q ss_pred CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030 188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD 267 (484)
Q Consensus 188 ~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D 267 (484)
++.+..| ..+.|+++.+..... .+ ...++++|.++|+++....+
T Consensus 70 --------~~~~i~~---------------------~~~~Gt~~al~~a~~-----~l--~~~~~vlV~~gD~P~i~~~~ 113 (456)
T PRK09451 70 --------PLNWVLQ---------------------AEQLGTGHAMQQAAP-----FF--ADDEDILMLYGDVPLISVET 113 (456)
T ss_pred --------CcEEEEC---------------------CCCCCcHHHHHHHHH-----hh--ccCCcEEEEeCCcccCCHHH
Confidence 2222212 136788886665332 12 13478999999997632222
Q ss_pred HH-HHHHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030 268 PT-FLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346 (484)
Q Consensus 268 p~-~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~ 346 (484)
.. ++..+.+ ....+.+++..+| .++|++...+|+ |+++.|-+.....+ ...+..|+..++|+-+.|.
T Consensus 114 i~~l~~~~~~--~~~~i~~~~~~~~-~~yG~v~~~~g~--V~~~~EKp~~~~~~-------~~~~~~~~GiYi~~~~~l~ 181 (456)
T PRK09451 114 LQRLRDAKPQ--GGIGLLTVKLDNP-TGYGRITRENGK--VVGIVEQKDATDEQ-------RQIQEINTGILVANGADLK 181 (456)
T ss_pred HHHHHHHhhc--CCEEEEEEEcCCC-CCceEEEecCCe--EEEEEECCCCChHH-------hhccEEEEEEEEEEHHHHH
Confidence 11 2222322 2234455555555 457887544554 44444433210000 1123578889999988776
Q ss_pred HHh
Q psy10030 347 RMV 349 (484)
Q Consensus 347 ~~~ 349 (484)
+.+
T Consensus 182 ~~l 184 (456)
T PRK09451 182 RWL 184 (456)
T ss_pred HHH
Confidence 654
No 64
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.70 E-value=4.7e-09 Score=107.58 Aligned_cols=42 Identities=50% Similarity=0.812 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccH
Q psy10030 15 GKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKI 56 (484)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~ 56 (484)
.+|++.|+++|++|++|+++||||||||||.+.||++++|+.
T Consensus 1 ~~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~ 42 (323)
T cd04193 1 KEWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGL 42 (323)
T ss_pred ChHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecC
Confidence 379999999999999999999999999999999999999985
No 65
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.65 E-value=9.8e-07 Score=93.93 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=102.9
Q ss_pred EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccE-EEEeCCCCchHHHHHHHHcCC
Q psy10030 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW-FIMTSELTDRPTREYFERNGY 189 (484)
Q Consensus 111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl-~iMtS~~t~e~t~~~l~~~~~ 189 (484)
.+|+||||+||||+.+.||.++|+ .|+|++++.++.+.. .| +.- +|.++ +..+.+.+++.+.
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~--------~g---~~~iiiv~~-~~~~~i~~~~~~~-- 64 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVIDAARA--------LG---PQKIHVVYG-HGAEQVRKALANR-- 64 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhcee---CCccHHHHHHHHHHh--------CC---CCeEEEEEC-CCHHHHHHHhcCC--
Confidence 479999999999998899999999 899999999888753 33 444 44444 5567788877652
Q ss_pred CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHH
Q psy10030 190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPT 269 (484)
Q Consensus 190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~ 269 (484)
+ +.++.|. .|.|+++.+..... .+ + .-+++++.+.|.++. ++.
T Consensus 65 -~-----i~~~~~~---------------------~~~G~~~ai~~a~~-----~l-~-~~~~~lv~~~D~p~i---~~~ 107 (451)
T TIGR01173 65 -D-----VNWVLQA---------------------EQLGTGHAVLQALP-----FL-P-DDGDVLVLYGDVPLI---SAE 107 (451)
T ss_pred -C-----cEEEEcC---------------------CCCchHHHHHHHHH-----hc-C-CCCcEEEEECCcCCc---CHH
Confidence 2 3223221 24577765544322 12 1 236899999999753 343
Q ss_pred HHHHHHH--cCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHH
Q psy10030 270 FLGYCVE--QGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346 (484)
Q Consensus 270 ~lg~~~~--~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~ 346 (484)
.+.-+.+ .....++.+.+..++ .++|.+... +|+ +.++.|-++...++. .....|++.++|+-++|.
T Consensus 108 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~g~--v~~~~ek~~~~~~~~-------~~~~~~~G~y~~~~~~l~ 177 (451)
T TIGR01173 108 TLERLLEAHRQNGITLLTAKLPDP-TGYGRIIRENDGK--VTAIVEDKDANAEQK-------AIKEINTGVYVFDGAALK 177 (451)
T ss_pred HHHHHHHHHhhCCEEEEEEecCCC-CCCCEEEEcCCCC--EEEEEEcCCCChHHh-------cCcEEEEEEEEEeHHHHH
Confidence 3332221 112344444444433 457877643 344 334433222201010 112457888999998875
Q ss_pred HHh
Q psy10030 347 RMV 349 (484)
Q Consensus 347 ~~~ 349 (484)
+.+
T Consensus 178 ~~l 180 (451)
T TIGR01173 178 RWL 180 (451)
T ss_pred HHH
Confidence 544
No 66
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.64 E-value=4.6e-07 Score=97.57 Aligned_cols=190 Identities=15% Similarity=0.186 Sum_probs=109.4
Q ss_pred EEEEEcCCCCcccc----ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030 111 AVIVLAGGQGTRLG----ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER 186 (484)
Q Consensus 111 avviLaGG~GTRLG----~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~ 186 (484)
-+|+||||.||||+ .+.||.++++ ..++|+|++.++++..+ + .. ..+|.|+..-.+.+.+.+++
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~~l~l--~g~~~ll~~tl~~l~~~--------~-~~-~iviv~~~~~~~~~~~~l~~ 69 (468)
T TIGR01479 2 IPVILAGGSGTRLWPLSRELYPKQFLAL--VGDLTMLQQTLKRLAGL--------P-CS-SPLVICNEEHRFIVAEQLRE 69 (468)
T ss_pred EEEEecCcccccCCccccCCCCCceeEc--CCCCcHHHHHHHHHhcC--------C-Cc-CcEEecCHHHHHHHHHHHHH
Confidence 36899999999997 3579999998 23499999999887532 2 11 33455544333345556654
Q ss_pred cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc--CCeEEEEEeCCCCccc
Q psy10030 187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR--GIKHIHVYCVDNILVK 264 (484)
Q Consensus 187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~--G~~~i~v~~vDN~l~~ 264 (484)
+|++..++ .++..+.|+|++..... ..+.++ +-..++|+++|+++.
T Consensus 70 ---~~~~~~~~-----------------------i~Ep~~~gTa~ai~~aa-----~~~~~~~~~~~~vlVl~~D~~i~- 117 (468)
T TIGR01479 70 ---IGKLASNI-----------------------ILEPVGRNTAPAIALAA-----LLAARRNGEDPLLLVLAADHVIT- 117 (468)
T ss_pred ---cCCCcceE-----------------------EecccccCchHHHHHHH-----HHHHHHHCCCcEEEEecCceeec-
Confidence 34332211 23345788988765422 112222 345799999999853
Q ss_pred cCCH-H---HHHHH---HHcCCceEEEEEEccCCCcccceEEEEC-----CeEEEEEeccCCcccccccccCCCcccccc
Q psy10030 265 VGDP-T---FLGYC---VEQGAHCGVKVVEKITPGESLGVLCNVD-----GKHKIVEYSELGNCSVFETQDQTGRLKFNL 332 (484)
Q Consensus 265 ~~Dp-~---~lg~~---~~~~~~~~~~vv~k~~~~e~~G~l~~~~-----g~~~vvEyse~~~e~~~~~~~~~g~~~f~~ 332 (484)
|+ . ++..+ .+++..+++-+.+ +.|...+|.+.... +...|..+-|-|+...++.--.+|. | +
T Consensus 118 --~~~~f~~~l~~~~~~a~~~~lvtlgi~p-~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~--~-~ 191 (468)
T TIGR01479 118 --DEDAFQAAVKLAMPAAAEGKLVTFGIVP-THPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGD--Y-Y 191 (468)
T ss_pred --CHHHHHHHHHHHHHHHhcCCEEEEEecC-CCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCC--e-E
Confidence 32 2 23322 2345555555544 44767889997541 2234444444444312221111121 1 5
Q ss_pred cceeeeeecHHHHHHHhh
Q psy10030 333 GSICNHYFSLECLQRMVK 350 (484)
Q Consensus 333 ~Ni~~~~~~l~~l~~~~~ 350 (484)
.|..++.|+.+.|.+.++
T Consensus 192 wNsGif~~~~~~ll~~l~ 209 (468)
T TIGR01479 192 WNSGMFLFRASRYLAELK 209 (468)
T ss_pred EEeeEEEEEHHHHHHHHH
Confidence 799999999887766553
No 67
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.63 E-value=1e-06 Score=84.86 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=87.9
Q ss_pred EEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccE-EEEeCCCCchHHHHHHHH
Q psy10030 111 AVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW-FIMTSELTDRPTREYFER 186 (484)
Q Consensus 111 avviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl-~iMtS~~t~e~t~~~l~~ 186 (484)
-+|+||||.||||+ .+.||+++|+ .|+|++++.++.+.+ .| +.- +|.+.....+.+++++++
T Consensus 2 ~aVILAgG~g~R~~plt~~~pK~Llpv---~g~pli~~~l~~l~~--------~g---~~~iivv~~~~~~~~i~~~l~~ 67 (214)
T cd04198 2 QAVILAGGGGSRLYPLTDNIPKALLPV---ANKPMIWYPLDWLEK--------AG---FEDVIVVVPEEEQAEISTYLRS 67 (214)
T ss_pred EEEEEeCCCCCcCCccccCCCcccCEE---CCeeHHHHHHHHHHH--------CC---CCeEEEEECHHHHHHHHHHHHh
Confidence 36889999999997 3789999999 899999999888864 23 434 444443344668888876
Q ss_pred cCCCCCCC-CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030 187 NGYFGLDP-AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV 265 (484)
Q Consensus 187 ~~~fgl~~-~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~ 265 (484)
.. ..... ..+.+. ....+.|+|+.++..... + .+.++|+++|.+. ..
T Consensus 68 ~~-~~~~~~~~~~~~---------------------~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~-~~ 115 (214)
T cd04198 68 FP-LNLKQKLDEVTI---------------------VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLIT-DL 115 (214)
T ss_pred cc-cccCcceeEEEe---------------------cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCcccc-cc
Confidence 42 01110 111111 123468999999876642 1 4568999999764 33
Q ss_pred CCHHHHHHHHHcCCceEEEEEEcc
Q psy10030 266 GDPTFLGYCVEQGAHCGVKVVEKI 289 (484)
Q Consensus 266 ~Dp~~lg~~~~~~~~~~~~vv~k~ 289 (484)
.--.++..|..+++.+++-+.+..
T Consensus 116 ~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 116 PLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred CHHHHHHHHhccCCcEEEEEeccC
Confidence 333467778888888888666544
No 68
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.63 E-value=9.8e-07 Score=94.33 Aligned_cols=180 Identities=18% Similarity=0.248 Sum_probs=107.8
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
++.+|+||||.||||+...||.++|+ .|+|++++.++++.. .| +.-+++...+..+.+.+++.+.
T Consensus 2 ~~~avIlAaG~g~Rl~~~~pK~ll~i---~Gkpli~~~l~~l~~--------~g---i~~iivvv~~~~~~i~~~~~~~- 66 (458)
T PRK14354 2 NRYAIILAAGKGTRMKSKLPKVLHKV---CGKPMVEHVVDSVKK--------AG---IDKIVTVVGHGAEEVKEVLGDR- 66 (458)
T ss_pred CceEEEEeCCCCcccCCCCChhhCEe---CCccHHHHHHHHHHh--------CC---CCeEEEEeCCCHHHHHHHhcCC-
Confidence 35689999999999998899999999 899999999998853 23 4445555456666676665431
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC-
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD- 267 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D- 267 (484)
+.+.. +..+.|+++.+..... .+ +..-+++++++.|+++....|
T Consensus 67 --------~~~~~---------------------~~~~~g~~~al~~a~~-----~l-~~~~d~vlv~~~D~p~i~~~~l 111 (458)
T PRK14354 67 --------SEFAL---------------------QEEQLGTGHAVMQAEE-----FL-ADKEGTTLVICGDTPLITAETL 111 (458)
T ss_pred --------cEEEE---------------------cCCCCCHHHHHHHHHH-----Hh-cccCCeEEEEECCccccCHHHH
Confidence 11111 1125677766554332 22 222378999999997543222
Q ss_pred HHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeE-EEEEeccCCcccccccccCCCcccccccceeeeeecHHHH
Q psy10030 268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKH-KIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECL 345 (484)
Q Consensus 268 p~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~-~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l 345 (484)
..++-++.+.+++.++.+.+..+| ..+|.+... +|+. .++|.....++ + ......|++.++|+-++|
T Consensus 112 ~~li~~~~~~~~~~t~~~~~~~~~-~~~g~v~~d~~~~V~~~~ek~~~~~~---~-------~~~~~~~~Giy~f~~~~l 180 (458)
T PRK14354 112 KNLIDFHEEHKAAATILTAIAENP-TGYGRIIRNENGEVEKIVEQKDATEE---E-------KQIKEINTGTYCFDNKAL 180 (458)
T ss_pred HHHHHHHHhcCCceEEEEEEcCCC-CCceEEEEcCCCCEEEEEECCCCChH---H-------hcCcEEEEEEEEEEHHHH
Confidence 224445555567776555554444 356776543 3432 23443222111 0 112356888999998766
Q ss_pred HHHh
Q psy10030 346 QRMV 349 (484)
Q Consensus 346 ~~~~ 349 (484)
.+..
T Consensus 181 ~~~l 184 (458)
T PRK14354 181 FEAL 184 (458)
T ss_pred HHHH
Confidence 5544
No 69
>PLN02917 CMP-KDO synthetase
Probab=98.59 E-value=3.7e-06 Score=85.33 Aligned_cols=174 Identities=16% Similarity=0.111 Sum_probs=105.6
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
++.+|++|+|.++||+ +|.+.++ .|+|++++.+++++... .+..++.. ...+.+.+++.+
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~L~~i---~GkPLL~~vi~~a~~~~----------~~~~VVV~--~~~e~I~~~~~~-- 106 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKPLVHI---LGKPMIQRTWERAKLAT----------TLDHIVVA--TDDERIAECCRG-- 106 (293)
T ss_pred cEEEEEecCCCCCCCC---CCCeeeE---CCEEHHHHHHHHHHcCC----------CCCEEEEE--CChHHHHHHHHH--
Confidence 6889999999999996 6999999 89999999999886421 23444444 446788888865
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
+|.+ +..|.. ..+.|++.+..++. .+ ....+++++.++|.+|. +|
T Consensus 107 -~~v~-----vi~~~~-------------------~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~PlI---~~ 151 (293)
T PLN02917 107 -FGAD-----VIMTSE-------------------SCRNGTERCNEALK------KL-EKKYDIVVNIQGDEPLI---EP 151 (293)
T ss_pred -cCCE-----EEeCCc-------------------ccCCchHHHHHHHH------hc-cCCCCEEEEecCCcCCC---CH
Confidence 2321 111111 22568888765432 22 23468999999999984 56
Q ss_pred HHHHHHHH---cCCceE--EEEE--EccCCCcccceEE--EE-CCe-E----E-EEEeccCCcccccccccCCCcccccc
Q psy10030 269 TFLGYCVE---QGAHCG--VKVV--EKITPGESLGVLC--NV-DGK-H----K-IVEYSELGNCSVFETQDQTGRLKFNL 332 (484)
Q Consensus 269 ~~lg~~~~---~~~~~~--~~vv--~k~~~~e~~G~l~--~~-~g~-~----~-vvEyse~~~e~~~~~~~~~g~~~f~~ 332 (484)
..|..+++ .+.++. ..+. .-.+| ...|.+. .. +|+ . . ++|+.+..++ ......
T Consensus 152 ~tI~~li~~~~~~~~~iv~t~~~~~~~~~~-~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~----------~~~i~~ 220 (293)
T PLN02917 152 EIIDGVVKALQAAPDAVFSTAVTSLKPEDA-SDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVN----------PQFPYL 220 (293)
T ss_pred HHHHHHHHHHHhcCCceEEEEeeecCHHHh-cCCCceEEEECCCCeEEEeecCcCCcCCCcccc----------cccceE
Confidence 65544332 333332 2222 22233 3456663 33 454 2 2 2243332221 123356
Q ss_pred cceeeeeecHHHHHHH
Q psy10030 333 GSICNHYFSLECLQRM 348 (484)
Q Consensus 333 ~Ni~~~~~~l~~l~~~ 348 (484)
-|++++.|+.++|..+
T Consensus 221 ~n~Giy~f~~~~L~~l 236 (293)
T PLN02917 221 LHLGIQSYDAKFLKIY 236 (293)
T ss_pred EEEEEEEeCHHHHHHH
Confidence 7999999999999844
No 70
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.47 E-value=5.8e-06 Score=80.01 Aligned_cols=168 Identities=17% Similarity=0.171 Sum_probs=92.8
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCC--CCchHHHHHHHH
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSE--LTDRPTREYFER 186 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~--~t~e~t~~~l~~ 186 (484)
+|+||||.||||+. +.||+|+|+ .|+|++++.++.+.. .| .... ++.+.. ...+...+.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i---~g~pli~~~l~~l~~--------~g-~~~i-vvv~~~~~~~~~~~~~~~~~ 67 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEV---DGKPMIEWVIESLAK--------IF-DSRF-IFICRDEHNTKFHLDESLKL 67 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEE---CCEEHHHHHHHhhhc--------cC-CceE-EEEEChHHhhhhhHHHHHHH
Confidence 58999999999964 789999999 899999998887753 34 2222 233321 111223333332
Q ss_pred cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccC
Q psy10030 187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVG 266 (484)
Q Consensus 187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~ 266 (484)
.. .+ .++ ++.| ..+.|+++.+.+.... + .+.++++|.+.|++.. ..
T Consensus 68 ~~-~~---~~i-~~~~---------------------~~~~g~~~~l~~a~~~-----l--~~~~~~lv~~~D~i~~-~~ 113 (231)
T cd04183 68 LA-PN---ATV-VELD---------------------GETLGAACTVLLAADL-----I--DNDDPLLIFNCDQIVE-SD 113 (231)
T ss_pred hC-CC---CEE-EEeC---------------------CCCCcHHHHHHHHHhh-----c--CCCCCEEEEecceeec-cC
Confidence 11 11 112 1111 1267887766654321 1 1347889999999752 22
Q ss_pred CHHHHHHHHHcCCceEEEEEEccCCCcccceEEEE-CCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHH
Q psy10030 267 DPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNV-DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLE 343 (484)
Q Consensus 267 Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~G~l~~~-~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~ 343 (484)
-..++-.+...+.+.++-++.+ +..+.|.+... +|+. .+..+-+.. -...|++.++|+-+
T Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~v~~d~~~~v--~~~~ek~~~-------------~~~~~~Giy~~~~~ 174 (231)
T cd04183 114 LLAFLAAFRERDLDGGVLTFFS--SHPRWSYVKLDENGRV--IETAEKEPI-------------SDLATAGLYYFKSG 174 (231)
T ss_pred HHHHHHHhhccCCceEEEEEeC--CCCCeEEEEECCCCCE--EEeEEcCCC-------------CCccEeEEEEECcH
Confidence 2234444455566666555554 33456766543 4432 222211111 02467888999976
No 71
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=3.4e-06 Score=87.35 Aligned_cols=200 Identities=21% Similarity=0.293 Sum_probs=129.6
Q ss_pred CCEEEEEEcCCCCccccc---cCCCccccccCCCCCc-HHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHH
Q psy10030 108 GDVAVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKS-LFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREY 183 (484)
Q Consensus 108 gkvavviLaGG~GTRLG~---~~PKg~~~i~l~~~~s-~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~ 183 (484)
.++-+++||||.|+||+. ..+|+..|+ .||- +.++.+-... ..| |--+-+..-+......++
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpF---gGkYRiIDF~LSN~v--------NSG---i~~I~VltQy~~~SL~~H 69 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPF---GGKYRIIDFALSNCV--------NSG---IRRIGVLTQYKSHSLNDH 69 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccccccc---CceeEEEeEEccccc--------ccC---CCeEEEEeccchhHHHHH
Confidence 367789999999999875 789988887 4443 3443322221 123 444444444444488899
Q ss_pred HHHcCCCCCCC--CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCC
Q psy10030 184 FERNGYFGLDP--AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNI 261 (484)
Q Consensus 184 l~~~~~fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~ 261 (484)
+.....|++++ +.|+++....- ...-.|+ -|+.+++.. + +.-+.+-+.+|+.|+++|-+
T Consensus 70 i~~G~~w~l~~~~~~v~ilp~~~~-------------~~~~~wy-~Gtadai~Q---n--l~~i~~~~~eyvlIlsgDhI 130 (393)
T COG0448 70 IGRGWPWDLDRKNGGVFILPAQQR-------------EGGERWY-EGTADAIYQ---N--LLIIRRSDPEYVLILSGDHI 130 (393)
T ss_pred hhCCCccccccccCcEEEeCchhc-------------cCCCcce-eccHHHHHH---h--HHHHHhcCCCEEEEecCCEE
Confidence 99887787763 33433332110 1122355 467765553 1 23445678999999999998
Q ss_pred ccccCCHHHHHHHHHcCCceEEEEEEccCC-CcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeee
Q psy10030 262 LVKVGDPTFLGYCVEQGAHCGVKVVEKITP-GESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYF 340 (484)
Q Consensus 262 l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~-~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~ 340 (484)
.+..--.+|-+|.+.++++++.|.+.... ..+.| +...|..-+++|+.|-|.++. .....+.+.+++|
T Consensus 131 -YkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fG-im~~D~~~~i~~F~eKp~~~~---------~~~~laSMgiYIf 199 (393)
T COG0448 131 -YKMDYSDMLDFHIESGADVTVAVKEVPREEASRFG-VMNVDENGRIIEFVEKPADGP---------PSNSLASMGIYIF 199 (393)
T ss_pred -EecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcC-ceEECCCCCEEeeeeccCcCC---------cccceeeeeeEEE
Confidence 46555559999999999999887755421 13568 455666667888888776511 1112567889999
Q ss_pred cHHHHHHHhhc
Q psy10030 341 SLECLQRMVKE 351 (484)
Q Consensus 341 ~l~~l~~~~~~ 351 (484)
+.++|.++++.
T Consensus 200 ~~~~L~~~L~~ 210 (393)
T COG0448 200 NTDLLKELLEE 210 (393)
T ss_pred cHHHHHHHHHH
Confidence 99999988864
No 72
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=98.42 E-value=7.6e-08 Score=97.90 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=55.3
Q ss_pred eeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccccccccccc---------cCCCCcccCCCCCChhhHHHHHHh
Q psy10030 30 VAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQ---------VFPPNCLSGVNTVDASTLGKYREL 100 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~~---------p~~~~~~~~~~~~~~~~~~~~~~~ 100 (484)
+||++||||||||||.++|||+++|+++ .++++.++.+.+...++ .+|+..|.|..+ ..+...-+++.
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~--~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~T-h~~T~~~fe~n 77 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELT--TNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDT-HSKTLKLLEEN 77 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCC--CCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCch-hHHHHHHHHHC
Confidence 4899999999999999999999999875 45666666554444433 478888988754 23333444433
Q ss_pred ---ch-----hcccCCCEEEEE
Q psy10030 101 ---GL-----KLISRGDVAVIV 114 (484)
Q Consensus 101 ---G~-----~~i~~gkvavvi 114 (484)
|+ ..+.|+++.++.
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~ 99 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLI 99 (315)
T ss_pred CccCCCcccEEEEecCceEEEe
Confidence 22 234566666654
No 73
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.39 E-value=2.2e-05 Score=76.44 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=102.7
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
++++|+||+|.++||+ +|.+.++ .|+|++++.++++.+. . .+.-+++++. ++.+.+++++
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i---~GkPli~~~i~~l~~~-------~---~~~~ivv~t~--~~~i~~~~~~-- 61 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDI---LGKPMIQHVYERAAQA-------A---GVEEVYVATD--DQRIEDAVEA-- 61 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCcc---CCcCHHHHHHHHHHhc-------C---CCCeEEEECC--hHHHHHHHHH--
Confidence 4789999999999995 5999999 8999999999988641 1 2555666654 4788888875
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
+|.+ + ++ +. ...+.|++++..++. ..+.+++++.++|+++....+-
T Consensus 62 -~~~~---v-~~-~~-------------------~~~~~g~~~~~~a~~---------~~~~d~~lv~~~D~P~i~~~~i 107 (238)
T PRK13368 62 -FGGK---V-VM-TS-------------------DDHLSGTDRLAEVML---------KIEADIYINVQGDEPMIRPRDI 107 (238)
T ss_pred -cCCe---E-Ee-cC-------------------ccCCCccHHHHHHHH---------hCCCCEEEEEcCCcCcCCHHHH
Confidence 3432 2 11 11 122467776554432 1256889999999987432221
Q ss_pred H-HHHHHHHcCC-ceEEEEEEccC------CCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeee
Q psy10030 269 T-FLGYCVEQGA-HCGVKVVEKIT------PGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYF 340 (484)
Q Consensus 269 ~-~lg~~~~~~~-~~~~~vv~k~~------~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~ 340 (484)
. ++..+...+. ++.+-+.++.. |. ..|++...+|+. ..+.+-+.. .. ++. .......|++.+.|
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~g~v--~~~~~~~~~-~~--~~~--~~~~~~~n~giy~~ 179 (238)
T PRK13368 108 DTLIQPMLDDPSINVATLCAPISTEEEFESPN-VVKVVVDKNGDA--LYFSRSPIP-SR--RDG--ESARYLKHVGIYAF 179 (238)
T ss_pred HHHHHHHHHCCCccceeEEEEcCCHHHhcCcC-CCEEEECCCCCE--EEeeCCCCC-CC--CCC--CCCceeEEEEEEEe
Confidence 1 2333333333 44444444332 32 234433345653 223321111 00 000 01112678999999
Q ss_pred cHHHHHHH
Q psy10030 341 SLECLQRM 348 (484)
Q Consensus 341 ~l~~l~~~ 348 (484)
+.++++..
T Consensus 180 ~~~~l~~~ 187 (238)
T PRK13368 180 RRDVLQQF 187 (238)
T ss_pred CHHHHHHH
Confidence 99988875
No 74
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=98.37 E-value=4.5e-06 Score=76.05 Aligned_cols=107 Identities=24% Similarity=0.424 Sum_probs=67.7
Q ss_pred EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCC
Q psy10030 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFG 191 (484)
Q Consensus 112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fg 191 (484)
+||||||.|+|||. ||.++++ .|+|+++++++.+... + +.-++++..+ +.+.+++.. ++
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i---~g~~li~~~l~~l~~~--------~---~~~Ivvv~~~--~~~~~~~~~---~~ 59 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPI---GGKPLIERVLEALREA--------G---VDDIVVVTGE--EEIYEYLER---YG 59 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEE---TTEEHHHHHHHHHHHH--------T---ESEEEEEEST--HHHHHHHTT---TT
T ss_pred CEEECCcCcccCCC--CccceeE---CCccHHHHHHHHhhcc--------C---CceEEEecCh--HHHHHHHhc---cC
Confidence 58999999999984 9999999 9999999999998753 2 4444444444 455555533 22
Q ss_pred CCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc-CCeEEEEEeCCCCccccCCHHH
Q psy10030 192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR-GIKHIHVYCVDNILVKVGDPTF 270 (484)
Q Consensus 192 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~-G~~~i~v~~vDN~l~~~~Dp~~ 270 (484)
+.++. .|.-+.|...+|.. .+... +.++++|..+|.++ .++..
T Consensus 60 -----~~~v~-----------------------~~~~~~G~~~sl~~-----a~~~~~~~~~vlv~~~D~p~---~~~~~ 103 (160)
T PF12804_consen 60 -----IKVVV-----------------------DPEPGQGPLASLLA-----ALSQLPSSEPVLVLPCDQPF---LSPEL 103 (160)
T ss_dssp -----SEEEE------------------------STSSCSHHHHHHH-----HHHTSTTSSEEEEEETTETT---S-HHH
T ss_pred -----ceEEE-----------------------eccccCChHHHHHH-----HHHhcccCCCcEEEeCCccc---cCHHH
Confidence 11111 12112444444332 23333 78999999999986 45665
Q ss_pred HHHHH
Q psy10030 271 LGYCV 275 (484)
Q Consensus 271 lg~~~ 275 (484)
+-...
T Consensus 104 l~~l~ 108 (160)
T PF12804_consen 104 LRRLL 108 (160)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 75
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.33 E-value=1e-05 Score=78.04 Aligned_cols=162 Identities=16% Similarity=0.179 Sum_probs=95.6
Q ss_pred EEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 112 vviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
+|+||||.|+||+. +.||+++|+ .|+|++++.++.+.. .| +.-+++...+..+.+.+++.+..
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv---~g~pli~~~l~~l~~--------~g---i~~i~vv~~~~~~~~~~~~~~~~ 68 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPV---ANVPLIDYTLEWLEK--------AG---VEEVFVVCCEHSQAIIEHLLKSK 68 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceE---CCEEHHHHHHHHHHH--------CC---CCeEEEEeCCcHHHHHHHHHhcc
Confidence 68899999999974 789999999 899999998887753 33 55444444566677777887643
Q ss_pred CCCCCC-CcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCC
Q psy10030 189 YFGLDP-AHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD 267 (484)
Q Consensus 189 ~fgl~~-~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~D 267 (484)
+..... ..+.+ . ......+.|+++........ + .+.++|.++|++. ...-
T Consensus 69 ~~~~~~~~~v~~---------------~----~~~~~~~~Gta~~l~~~~~~-----i----~~dflv~~gD~i~-~~~l 119 (216)
T cd02507 69 WSSLSSKMIVDV---------------I----TSDLCESAGDALRLRDIRGL-----I----RSDFLLLSCDLVS-NIPL 119 (216)
T ss_pred cccccCCceEEE---------------E----EccCCCCCccHHHHHHHhhc-----C----CCCEEEEeCCEee-cCCH
Confidence 210000 01110 0 00112367888776644321 1 3568999999874 2322
Q ss_pred HHHHHH--HHHcCCceEEEEEEccCC--------CcccceEEEEC--CeEEEEEeccCCcc
Q psy10030 268 PTFLGY--CVEQGAHCGVKVVEKITP--------GESLGVLCNVD--GKHKIVEYSELGNC 316 (484)
Q Consensus 268 p~~lg~--~~~~~~~~~~~vv~k~~~--------~e~~G~l~~~~--g~~~vvEyse~~~e 316 (484)
..++-. ....+.++++.+.....+ .+..++++... ++..++.|.+-+++
T Consensus 120 ~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 180 (216)
T cd02507 120 SELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE 180 (216)
T ss_pred HHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCc
Confidence 234432 333455555444443211 22346666543 44778888776554
No 76
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1.4e-07 Score=99.13 Aligned_cols=63 Identities=38% Similarity=0.581 Sum_probs=49.1
Q ss_pred HHhhhccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc-----ccCCCCcccCCC
Q psy10030 21 GLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV-----QVFPPNCLSGVN 87 (484)
Q Consensus 21 g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~-----~p~~~~~~~~~~ 87 (484)
|+..|..|++||+.||||||||||..+|||+++|. + ++++.++.+.+...+ .++|+..|.|..
T Consensus 97 ~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~-~---gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~n 164 (472)
T COG4284 97 GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK-D---GKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLN 164 (472)
T ss_pred hhhhhhcCceEEEEecCCcccccccCCCceeEEec-C---CCcHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 79999999999999999999999999999999997 1 444445544222211 578899999843
No 77
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=98.32 E-value=5.6e-06 Score=78.25 Aligned_cols=62 Identities=26% Similarity=0.464 Sum_probs=48.0
Q ss_pred EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER 186 (484)
Q Consensus 110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~ 186 (484)
+.+|+||||+|||||. .||.++++ .|+|++++.++.+... + +.-+++...+.++.++.++++
T Consensus 1 m~aIILAgG~gsRmg~-~~K~Ll~i---~GkplI~~vi~~l~~~--------~---i~~I~Vv~~~~~~~~~~~l~~ 62 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG-VEKPLIEV---CGRCLIDHVLSPLLKS--------K---VNNIIIATSPHTPKTEEYINS 62 (183)
T ss_pred CeEEEECCccCccCCC-CCceEeEE---CCEEHHHHHHHHHHhC--------C---CCEEEEEeCCCHHHHHHHHhh
Confidence 3578999999999975 79999999 8999999999988641 1 444444444567778888865
No 78
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=8.2e-06 Score=79.11 Aligned_cols=118 Identities=22% Similarity=0.387 Sum_probs=82.3
Q ss_pred EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCC
Q psy10030 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGY 189 (484)
Q Consensus 110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~ 189 (484)
+.+||||+|.|||||.+.||++..| .|++++++++++|.. -| .--.++.|+++..+.+.+|+.++++
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev---~gr~ii~~~i~~L~~--------~g--i~e~vvV~~g~~~~lve~~l~~~~~ 70 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEV---GGREIIYRTIENLAK--------AG--ITEFVVVTNGYRADLVEEFLKKYPF 70 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhc---CCeEeHHHHHHHHHH--------cC--CceEEEEeccchHHHHHHHHhcCCc
Confidence 5689999999999999999999999 799999988888754 12 2356888999999999999998763
Q ss_pred CCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHH
Q psy10030 190 FGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPT 269 (484)
Q Consensus 190 fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~ 269 (484)
+..++.-+. ++. || -.|+.+... +.|..+ +.+.+.|-+ -.|.
T Consensus 71 ------~~~iv~N~~---------------y~k-----tN-~~~Sl~~ak---d~~~~~----fii~~sD~v----ye~~ 112 (239)
T COG1213 71 ------NAKIVINSD---------------YEK-----TN-TGYSLLLAK---DYMDGR----FILVMSDHV----YEPS 112 (239)
T ss_pred ------ceEEEeCCC---------------ccc-----CC-ceeEEeeeh---hhhcCc----EEEEeCCEe----ecHH
Confidence 233333322 111 11 123322221 333222 788899976 4799
Q ss_pred HHHHHHHcC
Q psy10030 270 FLGYCVEQG 278 (484)
Q Consensus 270 ~lg~~~~~~ 278 (484)
++-...+..
T Consensus 113 ~~e~l~~a~ 121 (239)
T COG1213 113 ILERLLEAP 121 (239)
T ss_pred HHHHHHhCc
Confidence 998887754
No 79
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.25 E-value=5.1e-07 Score=95.63 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=51.2
Q ss_pred hhHHHH--HHHHHHhhhccCCeeeeeecCCcccccCCCCCCccccccHHH-HhhhhhhccccccccccccCCCCcccCCC
Q psy10030 11 ASTLGK--YRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKIQV-YIGHGYQELSGVQLSEVQVFPPNCLSGVN 87 (484)
Q Consensus 11 ~~~~~~--~~~~g~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~-f~~~~~~~L~ai~~~~~~p~~~~~~~~~~ 87 (484)
-+.++. | +.|+..++.|||||++||||||||||.++|||+++|-=.. |+.-..+++..++...=.++|+..|.|..
T Consensus 37 ~~~l~~~~~-~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~ 115 (420)
T PF01704_consen 37 YESLKEYEW-DEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFN 115 (420)
T ss_dssp HHHHHHSCH-HHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred hhHhccccc-ccchhHHhhCCEEEEEEcCcccCccCCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcc
Confidence 344555 6 7899999999999999999999999999999999882100 21211222222211111457788888875
Q ss_pred C
Q psy10030 88 T 88 (484)
Q Consensus 88 ~ 88 (484)
+
T Consensus 116 T 116 (420)
T PF01704_consen 116 T 116 (420)
T ss_dssp T
T ss_pred c
Confidence 4
No 80
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.23 E-value=3.7e-07 Score=92.52 Aligned_cols=69 Identities=23% Similarity=0.404 Sum_probs=49.0
Q ss_pred CCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcccccccccc-----ccCCCCcccCCCCCChhhHHHHHHhc
Q psy10030 28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEV-----QVFPPNCLSGVNTVDASTLGKYRELG 101 (484)
Q Consensus 28 ~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~G 101 (484)
++|||++||||||||||.++|||++++. .++++.++...+...+ .++|+..|.|..+ ..+...-+++.+
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~~~v~----~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~~~~ 75 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSLIEVR----DGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNT-DEDTKKILKKYA 75 (300)
T ss_pred CcEEEEEecCCcccccCCCCCceeeecC----CCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcc-hHHHHHHHHHcC
Confidence 6899999999999999999999999982 3555555544333222 4578888988765 334445555554
No 81
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=98.22 E-value=5.7e-05 Score=72.41 Aligned_cols=183 Identities=15% Similarity=0.098 Sum_probs=101.2
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
|+++|+||||.|+||+ .|.+.++ .|+|++++.++.+++.. .+..+++++ .++.+.+++.+
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l---~Gkpll~~~l~~l~~~~----------~~~~IvV~~--~~~~i~~~~~~-- 60 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL---GGKPLIAWTIEAALESK----------LFDRVVVST--DDEEIAEVARK-- 60 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh---CCccHHHHHHHHHHhCC----------CCCEEEEEC--CcHHHHHHHHH--
Confidence 5789999999999995 5999998 89999999999887421 144455554 35667777665
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc--CCeEEEEEeCCCCccccC
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR--GIKHIHVYCVDNILVKVG 266 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~--G~~~i~v~~vDN~l~~~~ 266 (484)
+|.. + .+.. +.....-..|.++.+... ++.+... +.++++++++|+++.
T Consensus 61 -~~~~---~-~~~~----------------~~~~~~~~~~~~~~i~~~-----l~~l~~~~~~~d~vlv~~~D~P~i--- 111 (223)
T cd02513 61 -YGAE---V-PFLR----------------PAELATDTASSIDVILHA-----LDQLEELGRDFDIVVLLQPTSPLR--- 111 (223)
T ss_pred -hCCC---c-eeeC----------------ChHHCCCCCCcHHHHHHH-----HHHHHHhCCCCCEEEEeCCCCCcC---
Confidence 3321 1 1110 001111112333333322 2333332 368999999999974
Q ss_pred CHHHH----HHHHHcCCceEEEEEEccCCCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecH
Q psy10030 267 DPTFL----GYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSL 342 (484)
Q Consensus 267 Dp~~l----g~~~~~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l 342 (484)
++..+ ..+...+.+..+-+++... .-..+.....+| ...+-|.+-......+. .....-|.+.++++.
T Consensus 112 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~q~~------~~~~~~n~~~y~~~~ 183 (223)
T cd02513 112 SAEDIDEAIELLLSEGADSVFSVTEFHR-FPWRALGLDDNG-LEPVNYPEDKRTRRQDL------PPAYHENGAIYIAKR 183 (223)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEecCc-CcHHheeeccCC-ceeccCcccccCCcCCC------hhHeeECCEEEEEEH
Confidence 45444 3334456787777776542 223333332333 33333322111101111 122356778889999
Q ss_pred HHHHHH
Q psy10030 343 ECLQRM 348 (484)
Q Consensus 343 ~~l~~~ 348 (484)
+++.+.
T Consensus 184 ~~~~~~ 189 (223)
T cd02513 184 EALLES 189 (223)
T ss_pred HHHHhc
Confidence 877653
No 82
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.18 E-value=1.2e-05 Score=74.41 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=34.1
Q ss_pred EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
+++|+||||.|+|||. ||.+.++ .|+|++++.++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~---~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPL---DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCee---CCeeHHHHHHHHHHh
Confidence 4689999999999985 9999999 899999999998864
No 83
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=98.09 E-value=2e-05 Score=76.67 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=74.3
Q ss_pred EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHHHcC
Q psy10030 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~~~~ 188 (484)
+++|+||||.|+|||.+.||.++++ .|+|++++.++.++.. ..+ ..++.++......+.+++.++
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~l~~l---~gkpll~~~i~~~~~~----------~~~~~ivVv~~~~~~~~~~~~~~~~- 68 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKMWLDL---VGEPIFIHALRPFLAD----------NRCSKIIIVTQAQERKHVQDLMKQL- 68 (230)
T ss_pred eEEEEECCeeccccCCCCCcceeEE---CCeEHHHHHHHHHHcC----------CCCCEEEEEeChhhHHHHHHHHHhc-
Confidence 7899999999999998899999999 8999999999887531 113 445555554445555566553
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCH
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDP 268 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp 268 (484)
|.....+ ...+.|++.. .++.. | ++.+. ..+.++++.+|.++ .+|
T Consensus 69 --~~~~~~~-------------------------~~v~~g~~r~-~sv~~-g-l~~~~--~~d~vli~~~d~P~---i~~ 113 (230)
T PRK13385 69 --NVADQRV-------------------------EVVKGGTERQ-ESVAA-G-LDRIG--NEDVILVHDGARPF---LTQ 113 (230)
T ss_pred --CcCCCce-------------------------EEcCCCchHH-HHHHH-H-HHhcc--CCCeEEEccCCCCC---CCH
Confidence 3211111 2334566542 22221 1 12221 23678888999997 467
Q ss_pred HHHHHHHH
Q psy10030 269 TFLGYCVE 276 (484)
Q Consensus 269 ~~lg~~~~ 276 (484)
..+.-+++
T Consensus 114 ~~i~~li~ 121 (230)
T PRK13385 114 DIIDRLLE 121 (230)
T ss_pred HHHHHHHH
Confidence 77765543
No 84
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.07 E-value=3.3e-05 Score=73.70 Aligned_cols=106 Identities=20% Similarity=0.301 Sum_probs=71.3
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
.+..|+||||+++|| .+|+++++ .|++++++.+++++. + .. .++| ++..+.+. +.
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~---~g~~lie~v~~~L~~--------~--~~-~vvi-~~~~~~~~-------~~ 58 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPL---NGRPLIEHVIDRLRP--------Q--VD-VVVI-SANRNQGR-------YA 58 (192)
T ss_pred CceEEEecCCccccc---ccccccee---CCeEHHHHHHHHhcc--------c--CC-EEEE-eCCCchhh-------hh
Confidence 678999999999999 89999999 999999999999863 1 22 3444 44443331 22
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCC---chHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGH---GGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV 265 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~---Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~ 265 (484)
.||++ |. .-...|. +|++.+| ...+-+|++|..+|+++
T Consensus 59 ~~g~~---vv------------------------~D~~~~~GPL~Gi~~al---------~~~~~~~~~v~~~D~P~--- 99 (192)
T COG0746 59 EFGLP---VV------------------------PDELPGFGPLAGILAAL---------RHFGTEWVLVLPCDMPF--- 99 (192)
T ss_pred ccCCc---ee------------------------ecCCCCCCCHHHHHHHH---------HhCCCCeEEEEecCCCC---
Confidence 35533 10 1111222 4555554 44568999999999997
Q ss_pred CCHHHHHHHHHcC
Q psy10030 266 GDPTFLGYCVEQG 278 (484)
Q Consensus 266 ~Dp~~lg~~~~~~ 278 (484)
..+.++-+..+..
T Consensus 100 i~~~lv~~l~~~~ 112 (192)
T COG0746 100 IPPELVERLLSAF 112 (192)
T ss_pred CCHHHHHHHHHhh
Confidence 4677887776643
No 85
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=98.03 E-value=0.00035 Score=68.66 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=103.7
Q ss_pred EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCC
Q psy10030 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFG 191 (484)
Q Consensus 112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fg 191 (484)
+||+|+|.||||+ +|.+.++ .|+|++++.++++++ ..+.-+++.++ ++.+.+.+++ ||
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l---~GkPli~~~le~~~~-----------~~~d~VvVvt~--~~~i~~~~~~---~g 59 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI---FGKPMIVHVAENANE-----------SGADRCIVATD--DESVAQTCQK---FG 59 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc---CCcCHHHHHHHHHHh-----------CCCCeEEEEeC--HHHHHHHHHH---cC
Confidence 6899999999994 8999999 899999999998753 11444444433 3557776665 44
Q ss_pred CCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHHH
Q psy10030 192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFL 271 (484)
Q Consensus 192 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~l 271 (484)
.. +. +.. ...+.|+..+...+. .+.....++++++++|.++ .+|..|
T Consensus 60 ~~---~v-----------------~~~----~~~~~Gt~r~~~~~~------~l~~~~~d~Vli~~gD~Pl---i~~~~I 106 (238)
T TIGR00466 60 IE---VC-----------------MTS----KHHNSGTERLAEVVE------KLALKDDERIVNLQGDEPF---IPKEII 106 (238)
T ss_pred CE---EE-----------------EeC----CCCCChhHHHHHHHH------HhCCCCCCEEEEEcCCcCc---CCHHHH
Confidence 32 11 000 112345444554432 1111235789999999997 467766
Q ss_pred HHHHH----cCCceEEEEEEccCCCcc----cceEE-EECCeEEEEEecc--CC--cccccccccCCCcccccccceeee
Q psy10030 272 GYCVE----QGAHCGVKVVEKITPGES----LGVLC-NVDGKHKIVEYSE--LG--NCSVFETQDQTGRLKFNLGSICNH 338 (484)
Q Consensus 272 g~~~~----~~~~~~~~vv~k~~~~e~----~G~l~-~~~g~~~vvEyse--~~--~e~~~~~~~~~g~~~f~~~Ni~~~ 338 (484)
.-+++ .+++++.-+++..++.+. ...++ ..+|+.. -++. +| .........+.+ ...+.|++.+
T Consensus 107 ~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~al--yfsr~~ip~~R~~~~~~~tpq~--~~~~~h~Giy 182 (238)
T TIGR00466 107 RQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYAL--YFSRSLIPFDRDFFAKRQTPVG--DNLLRHIGIY 182 (238)
T ss_pred HHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEE--EecCCCCCCCCCcccccccccc--cceeEEEEEE
Confidence 55443 346788888887653331 22222 3355421 1122 11 110111011111 1135699999
Q ss_pred eecHHHHHHHhh
Q psy10030 339 YFSLECLQRMVK 350 (484)
Q Consensus 339 ~~~l~~l~~~~~ 350 (484)
-|+.++|++...
T Consensus 183 ~~~~~~L~~~~~ 194 (238)
T TIGR00466 183 GYRAGFIEEYVA 194 (238)
T ss_pred eCCHHHHHHHHh
Confidence 999999999874
No 86
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=98.01 E-value=3.7e-05 Score=73.82 Aligned_cols=39 Identities=26% Similarity=0.558 Sum_probs=35.2
Q ss_pred EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
++|+||||.|||||.+.||.++++ .|+|++++.++++..
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l---~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLEL---GGRPLLEHTLDAFLA 39 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEE---CCeEHHHHHHHHHhc
Confidence 368999999999998889999999 899999999998863
No 87
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=97.99 E-value=8.3e-05 Score=71.18 Aligned_cols=40 Identities=40% Similarity=0.691 Sum_probs=36.0
Q ss_pred EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
+++|+||||.|+|||...||.++++ .|+|++++.++++..
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i---~Gkpll~~~i~~l~~ 40 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL---GGKPVLEHTLEAFLA 40 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE---CCeEHHHHHHHHHhc
Confidence 4689999999999997789999999 899999999998864
No 88
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=97.89 E-value=6.7e-05 Score=69.95 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=32.6
Q ss_pred EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
+||||||.|+||| .||.++++ .|+|++++.++++++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~---~g~pll~~~i~~l~~ 37 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY---KGKTILEHVVDNALR 37 (188)
T ss_pred eEEECCCCcccCC--CCceeccc---CCeeHHHHHHHHHHH
Confidence 6899999999998 59999999 899999999988864
No 89
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=97.89 E-value=0.00016 Score=67.22 Aligned_cols=37 Identities=30% Similarity=0.643 Sum_probs=33.3
Q ss_pred EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
++|+||||.|+|||. ||.++++ .|+|++++.++++..
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~ 38 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLEL---GGKPLLEHVLERLKP 38 (181)
T ss_pred cEEEECCCccccCCC--CceeeEE---CCEEHHHHHHHHHHh
Confidence 579999999999985 9999999 899999999888764
No 90
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=97.86 E-value=0.0003 Score=73.89 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=86.0
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNG 188 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~ 188 (484)
++++|+||||.|||||...||.++++ .|+|++++.++.+... + .+.-++++....++...+.+.+.
T Consensus 5 ~v~aIILAAG~GsRmg~~~pKqll~l---~GkPll~~tl~~l~~~--------~--~i~~IvVVv~~~~~~~~~~~~~~- 70 (378)
T PRK09382 5 DISLVIVAAGRSTRFSAEVKKQWLRI---GGKPLWLHVLENLSSA--------P--AFKEIVVVIHPDDIAYMKKALPE- 70 (378)
T ss_pred cceEEEECCCCCccCCCCCCeeEEEE---CCeeHHHHHHHHHhcC--------C--CCCeEEEEeChHHHHHHHHhccc-
Confidence 58899999999999998899999999 8999999988888631 1 23444555444333322221110
Q ss_pred CCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCc---hHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030 189 YFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHG---GLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV 265 (484)
Q Consensus 189 ~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~G---gi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~ 265 (484)
+. .+. ....|.+ .++.+|. ....++++|+.+|-++
T Consensus 71 -~~----~v~-------------------------~v~gG~~r~~SV~~gL~---------~l~~d~VLVhdadrPf--- 108 (378)
T PRK09382 71 -IK----FVT-------------------------LVTGGATRQESVRNALE---------ALDSEYVLIHDAARPF--- 108 (378)
T ss_pred -CC----eEE-------------------------EeCCCchHHHHHHHHHH---------hcCCCeEEEeeccccC---
Confidence 10 010 1112221 1333332 2223899999999886
Q ss_pred CCHHHHHHHHH--cCCceEEEEEEccCCCcccceEEEECCeEEEEEecc
Q psy10030 266 GDPTFLGYCVE--QGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSE 312 (484)
Q Consensus 266 ~Dp~~lg~~~~--~~~~~~~~vv~k~~~~e~~G~l~~~~g~~~vvEyse 312 (484)
+++..+..+++ .+.+.++-+++..++- +.|.......+...++--|
T Consensus 109 v~~e~I~~li~~~~~~~a~i~~~pv~Dti-k~~~~tldR~~l~~~QTPQ 156 (378)
T PRK09382 109 VPKELIDRLIEALDKADCVLPALPVADTL-KRANETVDREGLKLIQTPQ 156 (378)
T ss_pred CCHHHHHHHHHHhhcCCeEEEEEEeccCc-EEeeeEcCcccEEEEECCC
Confidence 46776665544 3456667777776553 4444333333444455433
No 91
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=97.83 E-value=0.00018 Score=67.63 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=32.3
Q ss_pred EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
++|+||||.|+|||. +|.++++ .|+|++++.++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL---GETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee---CCccHHHHHHHHHHh
Confidence 479999999999985 7999999 899999998877653
No 92
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=97.82 E-value=1.5e-05 Score=79.74 Aligned_cols=28 Identities=50% Similarity=0.812 Sum_probs=26.0
Q ss_pred eeeeeecCCcccccCCCCCCccccccHH
Q psy10030 30 VAVIVLAGGQGTRLGADYPNRIESIKIQ 57 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~ 57 (484)
|||++||||||||||.+.||++++|+++
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~ 28 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLP 28 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCC
Confidence 6899999999999999999999999854
No 93
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=97.77 E-value=0.0002 Score=66.84 Aligned_cols=38 Identities=29% Similarity=0.644 Sum_probs=33.7
Q ss_pred EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID 151 (484)
Q Consensus 110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~ 151 (484)
+++|+||||.|||||. .||.+.++ .|+|++++.++.++
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i---~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL---GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE---CCEEHHHHHHHHHH
Confidence 4689999999999983 49999999 89999999998875
No 94
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.77 E-value=1.7e-05 Score=84.70 Aligned_cols=85 Identities=19% Similarity=0.306 Sum_probs=54.7
Q ss_pred CCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccccccccc-----cccCCCCcccCCCCCChhhHHHHHHhc-
Q psy10030 28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSE-----VQVFPPNCLSGVNTVDASTLGKYRELG- 101 (484)
Q Consensus 28 ~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ai~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~G- 101 (484)
+|+||++||||||||||.+.|||++++- .++++.++.+.+... =..+|+..|.|..+ ..+...-+++.+
T Consensus 78 ~k~avlkLnGGlGTrmG~~~PKs~i~v~----~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T-~~~T~~~l~k~~~ 152 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVR----NGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNT-HDDTQKIVEKYTN 152 (469)
T ss_pred hcEEEEEecCCcccccCCCCCceeEEcC----CCCcHHHHHHHHHHHHHHHcCCCceEEEECCCch-hHHHHHHHHHcCC
Confidence 8999999999999999999999999861 233333333322222 24578888888764 333444555544
Q ss_pred ----hhcccCCCEEEEEEcC
Q psy10030 102 ----LKLISRGDVAVIVLAG 117 (484)
Q Consensus 102 ----~~~i~~gkvavviLaG 117 (484)
...+.|+++..+...|
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~ 172 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADD 172 (469)
T ss_pred CccceEEEecCceeeEecCC
Confidence 2334566666666554
No 95
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.76 E-value=6.1e-05 Score=71.79 Aligned_cols=41 Identities=27% Similarity=0.528 Sum_probs=36.1
Q ss_pred CCCEEEEEEcCCCCccccccCCCccccccCCCC-CcHHHHHHHHHHH
Q psy10030 107 RGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSG-KSLFQIQAEKIDK 152 (484)
Q Consensus 107 ~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~-~s~l~l~~~~i~~ 152 (484)
..++++|+||||+++||| .+|.++++ .| +|++++.++++..
T Consensus 6 ~~~i~~vILAgG~s~RmG--~~K~ll~~---~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 6 IDNIPCVILAGGKSSRMG--ENKALLPF---GSYSSLLEYQYTRLLK 47 (196)
T ss_pred ccCceEEEECCcccccCC--CCceEEEe---CCCCcHHHHHHHHHHH
Confidence 357899999999999997 58999998 78 9999999988853
No 96
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.73 E-value=0.00027 Score=73.97 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=35.3
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID 151 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~ 151 (484)
++++|+||||+||||| ..||.++++ .|+|++++.++.+.
T Consensus 5 ~i~~VILAgG~s~Rmg-g~~K~ll~i---~Gkpll~~~i~~l~ 43 (366)
T PRK14489 5 QIAGVILAGGLSRRMN-GRDKALILL---GGKPLIERVVDRLR 43 (366)
T ss_pred CceEEEEcCCcccCCC-CCCCceeEE---CCeeHHHHHHHHHH
Confidence 6889999999999996 379999999 89999999998875
No 97
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=97.71 E-value=0.00026 Score=68.53 Aligned_cols=41 Identities=34% Similarity=0.542 Sum_probs=37.5
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
++.+|+||||.|||||...||.+.++ .|+|++++.++++..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~---~g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPL---GGKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEE---CCEEHHHHHHHHHHc
Confidence 57899999999999998899999999 899999999998863
No 98
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=0.001 Score=66.08 Aligned_cols=159 Identities=22% Similarity=0.275 Sum_probs=101.0
Q ss_pred EEEEEcCCCCccccc---cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030 111 AVIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 111 avviLaGG~GTRLG~---~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~ 187 (484)
-+|+.|.|+|||+=. ..||-|+|| -+|+..|++++...+ .| |--+++.++.+...+.+||...
T Consensus 6 KAViPaAGlGTRfLPATKaiPKEMLPI---vdKP~IqYiVeEa~~--------aG---Ie~i~iVTgr~K~~IeDhFD~s 71 (291)
T COG1210 6 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYIVEEAVA--------AG---IEEILIVTGRGKRAIEDHFDTS 71 (291)
T ss_pred EEEEEccCcccccccccccCchhhccc---cCchhHHHHHHHHHH--------cC---CCEEEEEecCCcchHHHhCcCc
Confidence 378899999999843 789999999 789999999987754 35 6666666666666787777431
Q ss_pred -------------------CCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHc
Q psy10030 188 -------------------GYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTR 248 (484)
Q Consensus 188 -------------------~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~ 248 (484)
... -+..+++|..|.. |.|-|.+...... | -
T Consensus 72 ~ELE~~L~~~~K~~~L~~v~~i-~~~~~i~~vRQ~e---------------------~~GLGhAVl~A~~------~--v 121 (291)
T COG1210 72 YELENTLEKRGKRELLEEVRSI-PPLVTISFVRQKE---------------------PLGLGHAVLCAKP------F--V 121 (291)
T ss_pred HHHHHHHHHhCHHHHHHHHHhc-ccCceEEEEecCC---------------------CCcchhHHHhhhh------h--c
Confidence 011 1123444444444 8899988775433 3 5
Q ss_pred CCeEEEEEeCCCCccccCCHH---HHHHHHH-cCCceEEEEEEccCCCcccceEE----EECCeEEEEEeccCCc
Q psy10030 249 GIKHIHVYCVDNILVKVGDPT---FLGYCVE-QGAHCGVKVVEKITPGESLGVLC----NVDGKHKIVEYSELGN 315 (484)
Q Consensus 249 G~~~i~v~~vDN~l~~~~Dp~---~lg~~~~-~~~~~~~~vv~k~~~~e~~G~l~----~~~g~~~vvEyse~~~ 315 (484)
|-|.+.|.-.|-++. ..-|. ++-...+ .+.-++.+-|+.. .-.++|++. ..+|-+++...-|-|.
T Consensus 122 g~EpFaVlL~Ddl~~-~~~~~l~qmi~~ye~~g~svi~v~ev~~e-~v~kYGvi~~g~~~~~~~~~v~~~VEKP~ 194 (291)
T COG1210 122 GDEPFAVLLPDDLVD-SEKPCLKQMIELYEETGGSVIGVEEVPPE-DVSKYGVIDPGEPVEKGVYKVKGMVEKPK 194 (291)
T ss_pred CCCceEEEeCCeeec-CCchHHHHHHHHHHHhCCcEEEEEECCHH-HCcccceEecCccccCCeEEEEEEEECCC
Confidence 888888888887742 22232 2222222 3445566666655 345899997 2345566655555553
No 99
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.60 E-value=8.2e-05 Score=72.50 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=47.5
Q ss_pred EEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEe-CCCCchHHHHHHHH
Q psy10030 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMT-SELTDRPTREYFER 186 (484)
Q Consensus 110 vavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMt-S~~t~e~t~~~l~~ 186 (484)
|++|+||||.|+|||.+.||-.+++ .|+|+|.+.++.+.+. ..+..+++. +....+.+++++.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l---~Gkpvl~~tl~~f~~~----------~~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLEL---GGKPVLEYTLEAFLAS----------PEIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEE---TTEEHHHHHHHHHHTT----------TTESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEE---CCeEeHHHHHHHHhcC----------CCCCeEEEEecchhHHHHHHhhcC
Confidence 6799999999999999999999999 8999999998888631 224444444 44455667776665
No 100
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.0017 Score=65.91 Aligned_cols=190 Identities=22% Similarity=0.290 Sum_probs=116.5
Q ss_pred EEEEEEcCCCCccc----cccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHH
Q psy10030 110 VAVIVLAGGQGTRL----GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFE 185 (484)
Q Consensus 110 vavviLaGG~GTRL----G~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~ 185 (484)
+.-||||||.|||| +...||..+.+ .+++|+||..++|+..+. ..-..++.|+..-...+++=+.
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L--~~~~Sllq~T~~R~~~l~---------~~~~~~vVtne~~~f~v~eql~ 70 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKL--FGDLSLLQQTVKRLAFLG---------DIEEPLVVTNEKYRFIVKEQLP 70 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceee--CCCCcHHHHHHHHHhhcC---------CccCeEEEeCHHHHHHHHHHHh
Confidence 45799999999998 55899999766 668999999999887643 1234555566554445554444
Q ss_pred HcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCC----chHhHHHhhcChHHHHHHcCCeEEEEEeCCCC
Q psy10030 186 RNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGH----GGLYHALGATGILDTMHTRGIKHIHVYCVDNI 261 (484)
Q Consensus 186 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~----Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~ 261 (484)
+-+.-. ..+ +...|.|- .=++.++ ....+.|-.-+.|+..|-+
T Consensus 71 e~~~~~------------------~~~---------illEP~gRnTApAIA~aa~------~~~~~~~d~~~lVlpsDH~ 117 (333)
T COG0836 71 EIDIEN------------------AAG---------IILEPEGRNTAPAIALAAL------SATAEGGDALVLVLPSDHV 117 (333)
T ss_pred hhhhcc------------------ccc---------eEeccCCCCcHHHHHHHHH------HHHHhCCCcEEEEecCcce
Confidence 411000 011 23334442 1122222 2233345456889999987
Q ss_pred ccccCCH-HHHHH------HHHcCCceEEEEEEccCCCcccceEEEE----C-CeEEEEEeccCCcccccccccCCCccc
Q psy10030 262 LVKVGDP-TFLGY------CVEQGAHCGVKVVEKITPGESLGVLCNV----D-GKHKIVEYSELGNCSVFETQDQTGRLK 329 (484)
Q Consensus 262 l~~~~Dp-~~lg~------~~~~~~~~~~~vv~k~~~~e~~G~l~~~----~-g~~~vvEyse~~~e~~~~~~~~~g~~~ 329 (484)
. .|. .|... .++++.-+++-++|.+ |.-.+|=|-.- + +-+.|-++-|-|+.+.++.--..|+.
T Consensus 118 I---~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~-PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y- 192 (333)
T COG0836 118 I---ADEEAFLNAVKKAEKAAEEGGIVTFGIPPTR-PETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEY- 192 (333)
T ss_pred e---ccHHHHHHHHHHHHHHHHcCCEEEEecCCCC-CccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCce-
Confidence 4 344 34322 2345666777777766 77677777541 1 56777788888887666554444543
Q ss_pred ccccceeeeeecHH-HHHHHhh
Q psy10030 330 FNLGSICNHYFSLE-CLQRMVK 350 (484)
Q Consensus 330 f~~~Ni~~~~~~l~-~l~~~~~ 350 (484)
+.|..+++|+.+ ||+++.+
T Consensus 193 --~WNSGmF~Fra~~~l~e~~~ 212 (333)
T COG0836 193 --LWNSGMFLFRASVFLEELKK 212 (333)
T ss_pred --EeeccceEEEHHHHHHHHHh
Confidence 568888899988 5666653
No 101
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=97.57 E-value=0.0001 Score=73.18 Aligned_cols=42 Identities=33% Similarity=0.574 Sum_probs=38.1
Q ss_pred CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
.++++|+||||.|||||.+.||.++++ .|+|++++.++.+..
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l---~Gkpll~~tl~~~~~ 64 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPL---LGQPIALYSLYTFAR 64 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEE---CCeEHHHHHHHHHHh
Confidence 368999999999999998899999999 899999998888764
No 102
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.54 E-value=0.00018 Score=66.95 Aligned_cols=109 Identities=28% Similarity=0.446 Sum_probs=74.6
Q ss_pred EEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCC
Q psy10030 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYF 190 (484)
Q Consensus 111 avviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~f 190 (484)
.+|+||||+|||||. .-|+++++ +||+++.+.++.+++. . =-.++.+|.+| ..|++|+.+-
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~~-------~----d~i~v~isp~t-p~t~~~~~~~--- 62 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRKI-------V----DEIIVAISPHT-PKTKEYLESV--- 62 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHhh-------c----CcEEEEeCCCC-HhHHHHHHhc---
Confidence 579999999999997 77999999 9999999988887651 1 24566666665 5688999873
Q ss_pred CCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccccCCHHH
Q psy10030 191 GLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTF 270 (484)
Q Consensus 191 gl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~~Dp~~ 270 (484)
|++ | ...| |-|-+-.. . ..+...|. -+++.+.|=++ ..|.+
T Consensus 63 gv~---v-------------------------i~tp-G~GYv~Dl-~-----~al~~l~~-P~lvvsaDLp~---l~~~~ 103 (177)
T COG2266 63 GVK---V-------------------------IETP-GEGYVEDL-R-----FALESLGT-PILVVSADLPF---LNPSI 103 (177)
T ss_pred Cce---E-------------------------EEcC-CCChHHHH-H-----HHHHhcCC-ceEEEeccccc---CCHHH
Confidence 211 2 2333 44433331 1 23444565 78999999775 46888
Q ss_pred HHHHHHc
Q psy10030 271 LGYCVEQ 277 (484)
Q Consensus 271 lg~~~~~ 277 (484)
|...++.
T Consensus 104 i~~vi~~ 110 (177)
T COG2266 104 IDSVIDA 110 (177)
T ss_pred HHHHHHH
Confidence 8776553
No 103
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.53 E-value=0.00046 Score=65.89 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=34.6
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID 151 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~ 151 (484)
++.+|+||||+|+|||. +|.++++ .|+|++++.++.+.
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~ 44 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPW---QGVPLLQRVARIAA 44 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEE---CCEeHHHHHHHHHH
Confidence 68899999999999984 7999999 79999999998885
No 104
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=97.51 E-value=0.001 Score=62.78 Aligned_cols=39 Identities=33% Similarity=0.661 Sum_probs=35.0
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHH
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKID 151 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~ 151 (484)
++.+|+||||.|+||| ..||.+.++ .|+|++++.++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~ll~~---~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKGLQEL---NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCceeEE---CCEEHHHHHHHHHh
Confidence 6889999999999996 269999999 89999999988875
No 105
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.47 E-value=0.002 Score=69.63 Aligned_cols=189 Identities=16% Similarity=0.210 Sum_probs=109.3
Q ss_pred CEEEEEEcCCCCccccc----cCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030 109 DVAVIVLAGGQGTRLGA----DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF 184 (484)
Q Consensus 109 kvavviLaGG~GTRLG~----~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l 184 (484)
++-+||||||.||||-. ..||.++|+ -.++|+||..++++..+ + ..=++ |.|+..-.+.+++-+
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l--~~~~sllq~t~~r~~~~--------~-~~~~i-ivt~~~~~~~v~~ql 72 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCL--KGDLTMLQTTICRLNGV--------E-CESPV-VICNEQHRFIVAEQL 72 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeEC--CCCCCHHHHHHHHHHhC--------C-CCCcE-EEeCHHHHHHHHHHH
Confidence 46789999999999853 469999988 34589999999987642 2 23344 557776666666666
Q ss_pred HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchH--hHHHhhcChHHHHHHc--C-CeEEEEEeCC
Q psy10030 185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGL--YHALGATGILDTMHTR--G-IKHIHVYCVD 259 (484)
Q Consensus 185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi--~~~L~~~G~l~~l~~~--G-~~~i~v~~vD 259 (484)
.+.+. .+.+| ++ +..+-+|+-+ +.++ .+.++ + -.-+.|+..|
T Consensus 73 ~~~~~---~~~~i-----------------i~------EP~~rnTApaialaa~-------~~~~~~~~~~~~v~vlPaD 119 (478)
T PRK15460 73 RQLNK---LTENI-----------------IL------EPAGRNTAPAIALAAL-------AAKRHSPESDPLMLVLAAD 119 (478)
T ss_pred HhcCC---ccccE-----------------Ee------cCCCCChHHHHHHHHH-------HHHHhcCCCCCeEEEeccc
Confidence 55221 11122 22 1122223322 2222 12222 2 3578899999
Q ss_pred CCccccCCHH-HHH-----HH-HHcCCceEEEEEEccCCCcccceEEEE---C-----CeEEEEEeccCCcccccccccC
Q psy10030 260 NILVKVGDPT-FLG-----YC-VEQGAHCGVKVVEKITPGESLGVLCNV---D-----GKHKIVEYSELGNCSVFETQDQ 324 (484)
Q Consensus 260 N~l~~~~Dp~-~lg-----~~-~~~~~~~~~~vv~k~~~~e~~G~l~~~---~-----g~~~vvEyse~~~e~~~~~~~~ 324 (484)
.+. .|.. |.. .. ++.+.-+++=+.|.. |.-.+|=|-.- + +-..|..+.|-|+...++.--.
T Consensus 120 H~I---~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~-PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~ 195 (478)
T PRK15460 120 HVI---ADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL-PETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVA 195 (478)
T ss_pred ccc---CCHHHHHHHHHHHHHHHhcCCEEEEecCCCC-CCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHH
Confidence 874 3433 322 11 223555555555554 88888887532 1 2245666777776645443222
Q ss_pred CCcccccccceeeeeecHHHHHHHh
Q psy10030 325 TGRLKFNLGSICNHYFSLECLQRMV 349 (484)
Q Consensus 325 ~g~~~f~~~Ni~~~~~~l~~l~~~~ 349 (484)
+|.. +-|..+++|+.+.+-+.+
T Consensus 196 ~G~y---~WNsGiF~~~a~~~l~~~ 217 (478)
T PRK15460 196 SGEY---YWNSGMFLFRAGRYLEEL 217 (478)
T ss_pred cCCE---EEecceeheeHHHHHHHH
Confidence 3422 568889999998554433
No 106
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.25 E-value=0.0028 Score=66.40 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=37.4
Q ss_pred hcccCCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 103 KLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 103 ~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
..+.+-++++||||||+|+||| .+|.++++ .|+|++++.++.+..
T Consensus 168 ~~~~~~~i~~iILAGG~SsRmG--~~K~ll~~---~Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 168 GRAEEVPLSGLVLAGGRSSRMG--SDKALLSY---HESNQLVHTAALLRP 212 (369)
T ss_pred cccccCCceEEEEcCCccccCC--CCcEEEEE---CCccHHHHHHHHHHh
Confidence 3343346789999999999998 48999999 899999999888853
No 107
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=97.23 E-value=0.0044 Score=60.20 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=42.3
Q ss_pred EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCc--hHHHHHHHH
Q psy10030 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTD--RPTREYFER 186 (484)
Q Consensus 112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~--e~t~~~l~~ 186 (484)
+|+||||.++||+ +|.+.++ .|+|++++.++.++... .+.-+++.+.... +.+.+++..
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l---~Gkpli~~~i~~l~~~~----------~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPL---GGKPLLEHLLDRLKRSK----------LIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCCCCCCCC---CCccccc---CCccHHHHHHHHHHhCC----------CCCeEEEECCCCcccHHHHHHHHH
Confidence 5899999999995 5999998 89999999998886411 1344444444443 667776654
No 108
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=97.22 E-value=0.0026 Score=62.20 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=50.6
Q ss_pred CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHH
Q psy10030 108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFE 185 (484)
Q Consensus 108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~ 185 (484)
.++.+|++|+|.|||||.+.||-..++ .|+++|++.++.++... .+ ..+|.++...++...++..
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~l~l---~g~pll~~tl~~f~~~~----------~i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQYLEL---GGRPLLEHTLEAFLESP----------AIDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceEEEE---CCEEehHHHHHHHHhCc----------CCCeEEEEEChhhhHHHHHhhh
Confidence 368899999999999999999999999 99999999988886422 23 4455555556666666664
No 109
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=96.76 E-value=0.0021 Score=60.69 Aligned_cols=61 Identities=23% Similarity=0.431 Sum_probs=49.7
Q ss_pred EEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHH
Q psy10030 111 AVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFER 186 (484)
Q Consensus 111 avviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~ 186 (484)
-+|+||.|+|||+. .+.||+++.| .|+++++.++++++. ..|--++...++.+|+. +||++
T Consensus 2 nAIIlAAG~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~e-----------~gI~dI~IVvGYlkE~F-eYLkd 65 (231)
T COG4750 2 NAIILAAGLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLRE-----------AGIDDITIVVGYLKEQF-EYLKD 65 (231)
T ss_pred ceEEEecccccccccccccCChHHHHh---cCcccHHHHHHHHHH-----------CCCceEEEEeeehHHHH-HHHHH
Confidence 37899999999974 5899999999 999999998888864 23777777779988876 46655
No 110
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=96.58 E-value=0.0023 Score=66.50 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=35.7
Q ss_pred CCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHH
Q psy10030 107 RGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDK 152 (484)
Q Consensus 107 ~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~ 152 (484)
++.+..|+||||+++||| .+|.++++ .|+|+++++++++..
T Consensus 158 ~~~i~~IILAGGkSsRMG--~dKaLL~~---~GkpLl~~~ie~l~~ 198 (346)
T PRK14500 158 QTPLYGLVLTGGKSRRMG--KDKALLNY---QGQPHAQYLYDLLAK 198 (346)
T ss_pred CCCceEEEEeccccccCC--CCccccee---CCccHHHHHHHHHHh
Confidence 346889999999999998 69999999 799999998877753
No 111
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=96.15 E-value=0.22 Score=48.37 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=98.4
Q ss_pred EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHcCCCC
Q psy10030 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFG 191 (484)
Q Consensus 112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~~~fg 191 (484)
+|++|.|.++||. .|-+.++ .|+|++++.++.+++. ..+..++.+++. +.+.++.++ +|
T Consensus 2 aiIpArG~Skr~~---~Knl~~l---~GkpLi~~ti~~a~~s----------~~~d~IvVstd~--~~i~~~a~~---~g 60 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPF---CGKPMIAYSIEAALNS----------GLFDKVVVSTDD--EEIAEVAKS---YG 60 (222)
T ss_pred EEEccCCCCCCCC---Cccchhc---CCcCHHHHHHHHHHhC----------CCCCEEEEeCCC--HHHHHHHHH---cC
Confidence 5889999999995 5888888 8999999999988642 124455555553 567777765 44
Q ss_pred CCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHH-cCCeEEEEEeCCCCccccCCHH-
Q psy10030 192 LDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHT-RGIKHIHVYCVDNILVKVGDPT- 269 (484)
Q Consensus 192 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~-~G~~~i~v~~vDN~l~~~~Dp~- 269 (484)
.. +. |.- +..+..--.|..+++... ++.+.. ...+.+++++.|.++....+-.
T Consensus 61 ~~---v~-~~r----------------~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~ 115 (222)
T TIGR03584 61 AS---VP-FLR----------------PKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPFLQAKILKE 115 (222)
T ss_pred CE---eE-EeC----------------hHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCcCCHHHHHH
Confidence 22 21 110 111111112333333322 233322 3468899999999985332221
Q ss_pred HHHHHHHcCCceEEEEEEccC-CCcccceEEEECCeEEEEEeccCCcccccccccCCCcccccccceeeeeecHHHHHH
Q psy10030 270 FLGYCVEQGAHCGVKVVEKIT-PGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQR 347 (484)
Q Consensus 270 ~lg~~~~~~~~~~~~vv~k~~-~~e~~G~l~~~~g~~~vvEyse~~~e~~~~~~~~~g~~~f~~~Ni~~~~~~l~~l~~ 347 (484)
++....+.+++..+.|++... |.. ......+|++...-...... .+| +- .....-|-+.++++.+.+.+
T Consensus 116 ~i~~~~~~~~ds~~sv~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~--~rQ--d~---~~~y~~nga~y~~~~~~~~~ 185 (222)
T TIGR03584 116 AFELLKQPNAHFVFSVTSFAFPIQR--AFKLKENGGVEMFFPEHFNT--RSQ--DL---EEAYHDAGQFYWGKSQAWLE 185 (222)
T ss_pred HHHHHHhCCCCEEEEeeccCCChHH--heEECCCCcEEecCCCcccC--CCC--CC---chheeeCCeEEEEEHHHHHh
Confidence 233344467899998888532 321 11222355554322111111 011 11 11224577788899887644
No 112
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=95.64 E-value=0.076 Score=50.77 Aligned_cols=117 Identities=26% Similarity=0.302 Sum_probs=72.4
Q ss_pred CCCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccc-cEEEEeCCCCchHHHHHHH
Q psy10030 107 RGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-PWFIMTSELTDRPTREYFE 185 (484)
Q Consensus 107 ~gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~i-pl~iMtS~~t~e~t~~~l~ 185 (484)
..+++.|+||.|.||||| .+|-++|+ .|+|++.+.+++.+. . .. ..++.|+....+.....+.
T Consensus 3 ~~~v~~VvLAAGrssRmG--~~KlLap~---~g~plv~~~~~~a~~--------a---~~~~vivV~g~~~~~~~~a~~~ 66 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG--QPKLLAPL---DGKPLVRASAETALS--------A---GLDRVIVVTGHRVAEAVEALLA 66 (199)
T ss_pred CcceEEEEEcccccccCC--Ccceeccc---CCCcHHHHHHHHHHh--------c---CCCeEEEEeCcchhhHHHhhhc
Confidence 357999999999999999 79999999 999999999888763 1 24 4555555553444333332
Q ss_pred HcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030 186 RNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV 265 (484)
Q Consensus 186 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~ 265 (484)
. +. + .+...|+=.=|.-.+|+.- +......+ ..++++..|.+.+..
T Consensus 67 ~-----~~---~-----------------------~~v~npd~~~Gls~Sl~ag--~~a~~~~~-~~v~~~lgDmP~V~~ 112 (199)
T COG2068 67 Q-----LG---V-----------------------TVVVNPDYAQGLSTSLKAG--LRAADAEG-DGVVLMLGDMPQVTP 112 (199)
T ss_pred c-----CC---e-----------------------EEEeCcchhhhHhHHHHHH--HHhcccCC-CeEEEEeCCCCCCCH
Confidence 2 11 1 1222333223333443321 12222223 599999999998776
Q ss_pred CCHHHHHH
Q psy10030 266 GDPTFLGY 273 (484)
Q Consensus 266 ~Dp~~lg~ 273 (484)
.+..-+..
T Consensus 113 ~t~~rl~~ 120 (199)
T COG2068 113 ATVRRLIA 120 (199)
T ss_pred HHHHHHHH
Confidence 66654443
No 113
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=93.65 E-value=0.041 Score=53.72 Aligned_cols=26 Identities=38% Similarity=0.762 Sum_probs=21.8
Q ss_pred eeeeeecCCcccccCCCCCCcccccc
Q psy10030 30 VAVIVLAGGQGTRLGADYPNRIESIK 55 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~~~pkg~~~i~ 55 (484)
|+++++|||.|+|+|.+.||+..+++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l~ 26 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLELG 26 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEET
T ss_pred CEEEEeCCccchhcCcCCCCeeeEEC
Confidence 67889999999999999999999874
No 114
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=92.49 E-value=0.73 Score=49.66 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=73.6
Q ss_pred cCCCccccccC-C--CCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCch-HHHHHHHH----c-CCCCCCCCc
Q psy10030 126 DYPKGMYNIGL-P--SGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDR-PTREYFER----N-GYFGLDPAH 196 (484)
Q Consensus 126 ~~PKg~~~i~l-~--~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e-~t~~~l~~----~-~~fgl~~~~ 196 (484)
+.|||++|.-- + ...+|=++++|-.+- |... |.+.+++-| ...|. ..++.+++ + ..||.. =+
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Y----a~~~-g~~~lHFTV---S~eH~~~F~~~~~~~~~~~e~~~~v~-f~ 235 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALY----AKSN-GKANLHFTV---SPEHLDLFKKEVEEVKPKYEKKYGVK-FE 235 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHH----HhcC-CeEEEEEee---CHHHHHHHHHHHHHHHHHHHHhhCce-EE
Confidence 68999988722 1 234555555554432 2222 435665544 33332 22222222 1 124543 34
Q ss_pred EEEEEcCCc---cccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCc
Q psy10030 197 VIFFKQRSM---PCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNIL 262 (484)
Q Consensus 197 v~~f~Q~~~---P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l 262 (484)
|.|=.|..- .++|.|..+.-.++.++..-|.|||..+..| .+...+-|||=|+||+.
T Consensus 236 IsfS~Qk~sTDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNL---------N~ldaDiIFIKNIDNVv 295 (513)
T PF14134_consen 236 ISFSEQKPSTDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENL---------NDLDADIIFIKNIDNVV 295 (513)
T ss_pred EEecccCCCCCeeEECCCCCccCCCCCCEEeCCCcchHHHhhh---------ccccCCEEEEeCccccC
Confidence 666666542 3577888888888999999999999887665 44678999999999985
No 115
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=92.01 E-value=0.1 Score=51.95 Aligned_cols=39 Identities=33% Similarity=0.455 Sum_probs=29.2
Q ss_pred ccCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhh
Q psy10030 26 SRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGY 64 (484)
Q Consensus 26 ~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~ 64 (484)
...++++++||||+|+|+|.+.||.+.+++=.-++.+.+
T Consensus 21 ~~~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl 59 (252)
T PLN02728 21 KEKSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSL 59 (252)
T ss_pred ccCceEEEEEcccccccCCCCCCcceeEECCeEHHHHHH
Confidence 345688899999999999999999999764322334433
No 116
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=90.28 E-value=0.17 Score=49.08 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.6
Q ss_pred eeeeeecCCcccccCCCCCCcccccc
Q psy10030 30 VAVIVLAGGQGTRLGADYPNRIESIK 55 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~~~pkg~~~i~ 55 (484)
+++++||||+|+|+|.+.||.+.+++
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~l~~l~ 28 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKMWLDLV 28 (230)
T ss_pred eEEEEECCeeccccCCCCCcceeEEC
Confidence 67899999999999988999999874
No 117
>KOG1462|consensus
Probab=88.15 E-value=0.75 Score=48.09 Aligned_cols=129 Identities=17% Similarity=0.222 Sum_probs=77.2
Q ss_pred CEEEEEEcCCCCccc---cccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCcccc-EEEEeCCCCchHHHHHH
Q psy10030 109 DVAVIVLAGGQGTRL---GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLP-WFIMTSELTDRPTREYF 184 (484)
Q Consensus 109 kvavviLaGG~GTRL---G~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ip-l~iMtS~~t~e~t~~~l 184 (484)
+...|++|||-|||| +...||.++|| .++|++.+-+..+.+ .| +. .++.+.....+++++.+
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPI---gn~PMi~YpL~~L~~--------~g---fteiiVv~~e~e~~~i~~al 74 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPI---GNKPMILYPLNSLEQ--------AG---FTEIIVVVNEDEKLDIESAL 74 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhccc---CCcceeeeehhHHHh--------cC---CeEEEEEecHHHHHHHHHHH
Confidence 355789999999997 44889999999 889999887777753 33 33 33444455667888999
Q ss_pred HHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCccc
Q psy10030 185 ERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVK 264 (484)
Q Consensus 185 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~ 264 (484)
.++ +-++..+.+. .+|+++.+ --|+.+.++..+.. . ..+-++|+..|=+.
T Consensus 75 ~~~--~~l~~~~~~v----~ip~~~~~--------------d~gtadsLr~Iy~k-----i---kS~DflvlsCD~Vt-- 124 (433)
T KOG1462|consen 75 GSN--IDLKKRPDYV----EIPTDDNS--------------DFGTADSLRYIYSK-----I---KSEDFLVLSCDFVT-- 124 (433)
T ss_pred hcC--CcccccccEE----Eeeccccc--------------ccCCHHHHhhhhhh-----h---ccCCEEEEeccccc--
Confidence 775 4443221110 23333222 24777777665432 1 12567888888653
Q ss_pred cCCHH-HHHHHHHcCCce
Q psy10030 265 VGDPT-FLGYCVEQGAHC 281 (484)
Q Consensus 265 ~~Dp~-~lg~~~~~~~~~ 281 (484)
.++|. ++..+...++-+
T Consensus 125 dv~l~~lvd~FR~~d~sl 142 (433)
T KOG1462|consen 125 DVPLQPLVDKFRATDASL 142 (433)
T ss_pred CCCcHHHHHHHhccChhH
Confidence 23333 344444444333
No 118
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=86.11 E-value=0.43 Score=45.56 Aligned_cols=24 Identities=29% Similarity=0.637 Sum_probs=20.9
Q ss_pred eeeecCCcccccCCCCCCcccccc
Q psy10030 32 VIVLAGGQGTRLGADYPNRIESIK 55 (484)
Q Consensus 32 ~~~~aggqg~~l~~~~pkg~~~i~ 55 (484)
+++||||+|+|+|.++||.+.+++
T Consensus 2 aiIlAaG~s~R~~~~~~K~l~~l~ 25 (217)
T TIGR00453 2 AVIPAAGRGTRFGSGVPKQYLELG 25 (217)
T ss_pred EEEEcCcccccCCCCCCccEeEEC
Confidence 577999999999988899999763
No 119
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=84.85 E-value=0.59 Score=44.39 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=22.8
Q ss_pred hccCCeeeeeecCCcccccCCCCCCccccc
Q psy10030 25 ISRGDVAVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 25 ~~~~~~~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
+..-++++++||||+++|+| .||.+.++
T Consensus 4 ~~~~~i~~vILAgG~s~RmG--~~K~ll~~ 31 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG--ENKALLPF 31 (196)
T ss_pred ccccCceEEEECCcccccCC--CCceEEEe
Confidence 34567888999999999997 58888865
No 120
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=84.16 E-value=0.69 Score=44.55 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=22.8
Q ss_pred CeeeeeecCCcccccCCCCCCccccc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
++.+++||||.|+|+|...||.+.++
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~ 28 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPL 28 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEE
Confidence 46778899999999998899999876
No 121
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=84.05 E-value=6.3 Score=38.63 Aligned_cols=88 Identities=31% Similarity=0.304 Sum_probs=62.9
Q ss_pred CEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHH-----------HH--HHHhhCCccccEEEEeCCC
Q psy10030 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLI-----------EI--AKEKFGSGCLPWFIMTSEL 175 (484)
Q Consensus 109 kvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~-----------~l--~~~~~g~~~ipl~iMtS~~ 175 (484)
+..+||-|==..||| .=|++.+| .|+|+.++.+++..+-. +. +-+.+| --++|||.+
T Consensus 3 ~~~viIPAR~~STRL---pgKPLadI---~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G----~~avmT~~~ 72 (247)
T COG1212 3 KFVVIIPARLASTRL---PGKPLADI---GGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFG----GEAVMTSKD 72 (247)
T ss_pred ceEEEEecchhcccC---CCCchhhh---CCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC----CEEEecCCC
Confidence 577899988888888 23777888 99999999999886431 11 113455 468999987
Q ss_pred Cc---hHHHHHHHHcCCCCCCCCcEEEEEcCCccccc
Q psy10030 176 TD---RPTREYFERNGYFGLDPAHVIFFKQRSMPCFS 209 (484)
Q Consensus 176 t~---e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~ 209 (484)
-. +.+.+.+++ .+++.+.+.+-.|+-.|++.
T Consensus 73 h~SGTdR~~Ev~~~---l~~~~~~iIVNvQGDeP~i~ 106 (247)
T COG1212 73 HQSGTDRLAEVVEK---LGLPDDEIIVNVQGDEPFIE 106 (247)
T ss_pred CCCccHHHHHHHHh---cCCCcceEEEEccCCCCCCC
Confidence 44 445555555 55667789999999999873
No 122
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=83.92 E-value=0.66 Score=43.74 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=23.8
Q ss_pred eeeecCCcccccCCCCCCccccccHHHHhhhhhhc
Q psy10030 32 VIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQE 66 (484)
Q Consensus 32 ~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~ 66 (484)
.++||||+|||+|. +||.+.+++=.-++.+.+..
T Consensus 3 aIILAgG~gsRmg~-~~K~Ll~i~GkplI~~vi~~ 36 (183)
T TIGR00454 3 ALIMAGGKGTRLGG-VEKPLIEVCGRCLIDHVLSP 36 (183)
T ss_pred EEEECCccCccCCC-CCceEeEECCEEHHHHHHHH
Confidence 56799999999975 89999987422234443333
No 123
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=83.66 E-value=0.74 Score=49.24 Aligned_cols=39 Identities=26% Similarity=0.517 Sum_probs=29.3
Q ss_pred CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
++.+++||||+|||++...||.+.+++=.-++.+.+..+
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~gkpli~~~l~~l 43 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLLGEPMLRFVYRAL 43 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccCCCcHHHHHHHHH
Confidence 567788999999999999999999974322445555444
No 124
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=82.56 E-value=0.81 Score=43.49 Aligned_cols=25 Identities=48% Similarity=0.885 Sum_probs=21.2
Q ss_pred eeeeeecCCcccccCCCCCCccccc
Q psy10030 30 VAVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
+++++||||+|+|+|...||.+.++
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i 25 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL 25 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE
Confidence 3567899999999988789988876
No 125
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=82.04 E-value=0.86 Score=48.09 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=28.8
Q ss_pred CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
++++++||||+|+|+|...||.+.+++=.-++.+.+..+
T Consensus 5 ~v~aIILAAG~GsRmg~~~pKqll~l~GkPll~~tl~~l 43 (378)
T PRK09382 5 DISLVIVAAGRSTRFSAEVKKQWLRIGGKPLWLHVLENL 43 (378)
T ss_pred cceEEEECCCCCccCCCCCCeeEEEECCeeHHHHHHHHH
Confidence 467888999999999989999999875222345544333
No 126
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=81.98 E-value=0.98 Score=44.38 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=32.2
Q ss_pred cCCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccc
Q psy10030 27 RGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELS 68 (484)
Q Consensus 27 ~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ 68 (484)
..++.++++|+|+|||+|..-||+..+++=.-.+.|+++.+.
T Consensus 2 ~~~~~~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~ 43 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFL 43 (230)
T ss_pred CceEEEEEEcCccccccCCCCCceEEEECCEEehHHHHHHHH
Confidence 356778889999999999999999998765444566554443
No 127
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.40 E-value=0.94 Score=41.49 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=19.9
Q ss_pred eeeeeecCCcccccCCCCCCcccccc
Q psy10030 30 VAVIVLAGGQGTRLGADYPNRIESIK 55 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~~~pkg~~~i~ 55 (484)
+++++||||.|+|+|. ||.+.+++
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~~ 24 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPLD 24 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCeeC
Confidence 3567899999999986 99998763
No 128
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=81.16 E-value=0.86 Score=44.73 Aligned_cols=24 Identities=38% Similarity=0.775 Sum_probs=20.7
Q ss_pred eeeecCCcccccCCCCCCcccccc
Q psy10030 32 VIVLAGGQGTRLGADYPNRIESIK 55 (484)
Q Consensus 32 ~~~~aggqg~~l~~~~pkg~~~i~ 55 (484)
+++||.|+|+|||.+-||.+..++
T Consensus 6 avILAAG~GsRlg~~~PK~Lvev~ 29 (239)
T COG1213 6 AVILAAGFGSRLGPDIPKALVEVG 29 (239)
T ss_pred EEEEecccccccCCCCCchhhhcC
Confidence 456889999999999999998763
No 129
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=80.02 E-value=1 Score=45.09 Aligned_cols=24 Identities=42% Similarity=0.750 Sum_probs=20.5
Q ss_pred eeeecCCcccccC----CCCCCcccccc
Q psy10030 32 VIVLAGGQGTRLG----ADYPNRIESIK 55 (484)
Q Consensus 32 ~~~~aggqg~~l~----~~~pkg~~~i~ 55 (484)
+++||||.||||. ..+||.+.+++
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~ll~l~ 30 (274)
T cd02509 3 PVILAGGSGTRLWPLSRESYPKQFLKLF 30 (274)
T ss_pred EEEEcccccccCCcCCCCCCCceEeEcC
Confidence 5678999999995 57999999874
No 130
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=79.89 E-value=1.1 Score=42.53 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=20.5
Q ss_pred CCeeeeeecCCcccccCCCCCCccccc
Q psy10030 28 GDVAVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 28 ~~~~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
-++++++||||+|+|+|. +|.+.++
T Consensus 6 ~~~~~vILAgG~s~Rmg~--~K~ll~~ 30 (200)
T PRK02726 6 NNLVALILAGGKSSRMGQ--DKALLPW 30 (200)
T ss_pred CCceEEEEcCCCcccCCC--CceeeEE
Confidence 356788899999999984 7888865
No 131
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=79.87 E-value=1.1 Score=41.39 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=19.5
Q ss_pred eeeeeecCCcccccCCCCCCccccc
Q psy10030 30 VAVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
+++++||||.|||+|. .||.+.++
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i 24 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL 24 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE
Confidence 3678899999999984 48888865
No 132
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=79.30 E-value=2 Score=45.02 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=24.3
Q ss_pred HhhhccCCeeeeeecCCcccccCCCCCCccccc
Q psy10030 22 LKLISRGDVAVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 22 ~~~~~~~~~~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
...+.+-+++.++||||+++|+|. +|.+.++
T Consensus 167 ~~~~~~~~i~~iILAGG~SsRmG~--~K~ll~~ 197 (369)
T PRK14490 167 LGRAEEVPLSGLVLAGGRSSRMGS--DKALLSY 197 (369)
T ss_pred hcccccCCceEEEEcCCccccCCC--CcEEEEE
Confidence 344444677889999999999984 8999865
No 133
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=79.03 E-value=1.2 Score=40.06 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=24.9
Q ss_pred eeeecCCcccccCCCCCCccccccHHHHhhhhhhccc
Q psy10030 32 VIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELS 68 (484)
Q Consensus 32 ~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ 68 (484)
+++||||+|+|+|. ||-+.+++=..++.+.+..+.
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i~g~~li~~~l~~l~ 35 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPIGGKPLIERVLEALR 35 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEETTEEHHHHHHHHHH
T ss_pred CEEECCcCcccCCC--CccceeECCccHHHHHHHHhh
Confidence 46789999999986 999988754435555444443
No 134
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=78.70 E-value=1.5 Score=41.11 Aligned_cols=25 Identities=24% Similarity=0.626 Sum_probs=20.2
Q ss_pred CeeeeeecCCcccccCCCCCCccccc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
++.+++||||+|+|+| ..||.+.++
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~ll~~ 27 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKGLQEL 27 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCceeEE
Confidence 5678889999999996 368888865
No 135
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=78.01 E-value=1.5 Score=46.77 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=29.5
Q ss_pred CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELS 68 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ 68 (484)
|+++++||+|.|+|++.+.||.+.+++=.-++.+.+..+.
T Consensus 1 ~~~~iIlAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~ 40 (450)
T PRK14360 1 MLAVAILAAGKGTRMKSSLPKVLHPLGGKSLVERVLDSCE 40 (450)
T ss_pred CceEEEEeCCCCccCCCCCChhcCEECChhHHHHHHHHHH
Confidence 3577889999999999889999998753334455554443
No 136
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=77.81 E-value=39 Score=33.20 Aligned_cols=119 Identities=22% Similarity=0.295 Sum_probs=74.4
Q ss_pred CCEEEEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCC-CchHHHHHHHH
Q psy10030 108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSEL-TDRPTREYFER 186 (484)
Q Consensus 108 gkvavviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~-t~e~t~~~l~~ 186 (484)
+++++|+=|==-.||| .=|.|.|+ -+.|+++++++++++.. ..=-++|-||.. +++.+.++..+
T Consensus 2 ~~I~~IiQARmgStRL---pgKvLlpL---~~~pmI~~~lervrks~---------~~d~ivvATS~~~~d~~l~~~~~~ 66 (241)
T COG1861 2 SMILVIIQARMGSTRL---PGKVLLPL---GGEPMIEYQLERVRKSK---------DLDKIVVATSDKEEDDALEEVCRS 66 (241)
T ss_pred CcEEEEeeecccCccC---Ccchhhhc---CCCchHHHHHHHHhccc---------cccceEEEecCCcchhHHHHHHHH
Confidence 4667777663333444 13678888 89999999999998643 223578888886 55566777777
Q ss_pred cCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCc-hHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcccc
Q psy10030 187 NGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHG-GLYHALGATGILDTMHTRGIKHIHVYCVDNILVKV 265 (484)
Q Consensus 187 ~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~G-gi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~~~ 265 (484)
+.+. | | -|.+ +++.-. .....+.+...|.=.-+||++
T Consensus 67 ~G~~------v--f--------------------------rGs~~dVL~Rf-----~~a~~a~~~~~VVRvTGD~P~--- 104 (241)
T COG1861 67 HGFY------V--F--------------------------RGSEEDVLQRF-----IIAIKAYSADVVVRVTGDNPF--- 104 (241)
T ss_pred cCee------E--e--------------------------cCCHHHHHHHH-----HHHHHhcCCCeEEEeeCCCCC---
Confidence 5421 1 1 1222 233322 233444556677777889997
Q ss_pred CCHHHHHH----HHHcCCceEE
Q psy10030 266 GDPTFLGY----CVEQGAHCGV 283 (484)
Q Consensus 266 ~Dp~~lg~----~~~~~~~~~~ 283 (484)
.||.++.. +.++|+|+..
T Consensus 105 ~dp~l~d~~v~~~l~~gaDY~s 126 (241)
T COG1861 105 LDPELVDAAVDRHLEKGADYVS 126 (241)
T ss_pred CCHHHHHHHHHHHHhcCCcccc
Confidence 68987654 4556777754
No 137
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=77.60 E-value=1.4 Score=41.14 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.2
Q ss_pred eeeeecCCcccccCCCCCCccccc
Q psy10030 31 AVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 31 ~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
++++||||+|+|+|. +|.+.++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~ 23 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL 23 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee
Confidence 467799999999986 6888865
No 138
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=77.54 E-value=1.3 Score=40.71 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=18.9
Q ss_pred eeeeecCCcccccCCCCCCcccccc
Q psy10030 31 AVIVLAGGQGTRLGADYPNRIESIK 55 (484)
Q Consensus 31 ~~~~~aggqg~~l~~~~pkg~~~i~ 55 (484)
++++||||+|+|+|. ||.+.+++
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~~ 24 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLELG 24 (181)
T ss_pred cEEEECCCccccCCC--CceeeEEC
Confidence 457799999999986 89888763
No 139
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=77.53 E-value=1.3 Score=41.80 Aligned_cols=36 Identities=31% Similarity=0.547 Sum_probs=25.2
Q ss_pred eeeecCCcccccCC---CCCCccccccHHHHhhhhhhcc
Q psy10030 32 VIVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 32 ~~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~~~L 67 (484)
+++||||+|+|++. +.||.+.+++=.-++.+.+..+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l 39 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYL 39 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHH
Confidence 35688999999865 6899999985333445544333
No 140
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=77.43 E-value=1.3 Score=42.50 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=24.2
Q ss_pred eeeecCCcccccC---CCCCCccccccHHHHhhhhhh
Q psy10030 32 VIVLAGGQGTRLG---ADYPNRIESIKIQVYIGHGYQ 65 (484)
Q Consensus 32 ~~~~aggqg~~l~---~~~pkg~~~i~~~~f~~~~~~ 65 (484)
+++||||.|||+. ...||.+.+++=.-++.+.+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~ 37 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIE 37 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHH
Confidence 4789999999984 478999998753223445333
No 141
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=77.05 E-value=1.4 Score=40.66 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.2
Q ss_pred eeeecCCcccccCCCCCCcccccc
Q psy10030 32 VIVLAGGQGTRLGADYPNRIESIK 55 (484)
Q Consensus 32 ~~~~aggqg~~l~~~~pkg~~~i~ 55 (484)
+++||||+|+|+| .||.+.+++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~~ 23 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPYK 23 (188)
T ss_pred eEEECCCCcccCC--CCceecccC
Confidence 5779999999997 588888653
No 142
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=76.25 E-value=1.7 Score=45.52 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=26.6
Q ss_pred CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhh
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQ 65 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~ 65 (484)
++++++||||+|+|+| ..||.+.+++=..++.+.+.
T Consensus 5 ~i~~VILAgG~s~Rmg-g~~K~ll~i~Gkpll~~~i~ 40 (366)
T PRK14489 5 QIAGVILAGGLSRRMN-GRDKALILLGGKPLIERVVD 40 (366)
T ss_pred CceEEEEcCCcccCCC-CCCCceeEECCeeHHHHHHH
Confidence 6788999999999996 47999998752224455443
No 143
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=76.08 E-value=1.4 Score=41.52 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.0
Q ss_pred eeecCCcccccC---CCCCCcccccc
Q psy10030 33 IVLAGGQGTRLG---ADYPNRIESIK 55 (484)
Q Consensus 33 ~~~aggqg~~l~---~~~pkg~~~i~ 55 (484)
++||||.|||+. .+.||.+.+++
T Consensus 2 vILAaG~gtRl~plt~~~pK~llpv~ 27 (200)
T cd02508 2 IILAGGEGTRLSPLTKKRAKPAVPFG 27 (200)
T ss_pred EEeCCCCCcccchhhcCCcceeeEEC
Confidence 669999999996 47999999985
No 144
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=75.87 E-value=1.5 Score=41.81 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=25.9
Q ss_pred eeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 32 VIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 32 ~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
+++||||.|||++...||.+.+++=.-.+.+.+..+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~gkpli~~~i~~l 36 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVLDAA 36 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeCCccHHHHHHHHH
Confidence 367899999999977899999885333445544443
No 145
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=75.80 E-value=1.8 Score=41.50 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=23.5
Q ss_pred eeeecCCcccccC---CCCCCccccccHHHHhhhhh
Q psy10030 32 VIVLAGGQGTRLG---ADYPNRIESIKIQVYIGHGY 64 (484)
Q Consensus 32 ~~~~aggqg~~l~---~~~pkg~~~i~~~~f~~~~~ 64 (484)
+++||||.|+|++ ...||.+.+++=.-++.+.+
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l 38 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPL 38 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHH
Confidence 4568999999997 47999999875322334433
No 146
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=75.21 E-value=1.5 Score=41.61 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=26.1
Q ss_pred eeeecCCcccccC---CCCCCccccccHHHHhhhhhhccc
Q psy10030 32 VIVLAGGQGTRLG---ADYPNRIESIKIQVYIGHGYQELS 68 (484)
Q Consensus 32 ~~~~aggqg~~l~---~~~pkg~~~i~~~~f~~~~~~~L~ 68 (484)
+++||||.|+|++ ...||.+.+++=.-++.+.+..+.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~ 40 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFI 40 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHH
Confidence 4679999999996 379999999853334455444443
No 147
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=74.62 E-value=1.9 Score=45.68 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=28.5
Q ss_pred eeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccc
Q psy10030 30 VAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELS 68 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ 68 (484)
..+++||+|.|||+....||.+.+++=.-++.+.++.+.
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~Llpi~gkPli~~~i~~l~ 41 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKVLHTICGKPMLFYILKEAF 41 (430)
T ss_pred ccEEEEcCCCCccCCCCCCceeCEECCccHHHHHHHHHH
Confidence 457789999999999999999999853324455444443
No 148
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=74.04 E-value=2.4 Score=45.19 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=28.6
Q ss_pred CCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 28 ~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
.+..+++||||+|||++...||.+.+++=.-++.+.+..+
T Consensus 4 ~~~~aiILAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l 43 (446)
T PRK14353 4 RTCLAIILAAGEGTRMKSSLPKVLHPVAGRPMLAHVLAAA 43 (446)
T ss_pred ccceEEEEcCCCCCccCCCCCcccCEECCchHHHHHHHHH
Confidence 3566778999999999988899999974222345544333
No 149
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=74.03 E-value=1.9 Score=46.67 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=24.7
Q ss_pred eeeecCCcccccC----CCCCCccccccH-HHHhhhhhhcc
Q psy10030 32 VIVLAGGQGTRLG----ADYPNRIESIKI-QVYIGHGYQEL 67 (484)
Q Consensus 32 ~~~~aggqg~~l~----~~~pkg~~~i~~-~~f~~~~~~~L 67 (484)
+++||||.||||. ..+||.+.++.= ..++.+.+..+
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l 43 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRL 43 (468)
T ss_pred EEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHH
Confidence 4669999999997 468999999831 12335544333
No 150
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=73.81 E-value=2.3 Score=46.07 Aligned_cols=41 Identities=34% Similarity=0.544 Sum_probs=30.0
Q ss_pred CCeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccc
Q psy10030 28 GDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELS 68 (484)
Q Consensus 28 ~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ 68 (484)
..+++++||||.|||++.+.||.+.+++=.-++.+.+..+.
T Consensus 3 ~~~~avILAaG~gtRm~~~~pK~llpi~gkpli~~~l~~l~ 43 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRSDTPKVLHTLAGRSMLGHVLHAAA 43 (482)
T ss_pred CCceEEEEcCCCCCcCCCCCCceeceeCCccHHHHHHHHHH
Confidence 45678889999999999889999998842224455444443
No 151
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=73.14 E-value=2.5 Score=44.78 Aligned_cols=28 Identities=43% Similarity=0.535 Sum_probs=24.7
Q ss_pred CCeeeeeecCCcccccC---CCCCCcccccc
Q psy10030 28 GDVAVIVLAGGQGTRLG---ADYPNRIESIK 55 (484)
Q Consensus 28 ~~~~~~~~aggqg~~l~---~~~pkg~~~i~ 55 (484)
+++.+++||||.||||. ..-||-|.+++
T Consensus 4 ~~~~avILAaG~GtRl~PLT~~~PK~llPv~ 34 (407)
T PRK00844 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPFG 34 (407)
T ss_pred CceEEEEECCCCCCccchhhcCCcccceeeC
Confidence 56777889999999998 89999999985
No 152
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=72.59 E-value=2.4 Score=40.73 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=25.6
Q ss_pred eeeeecCCcccccC---CCCCCccccccHHHHhhhhhhcc
Q psy10030 31 AVIVLAGGQGTRLG---ADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 31 ~~~~~aggqg~~l~---~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
.+++||||.|||++ ...||.+.+++=.-++.+.+..+
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l 41 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDL 41 (236)
T ss_pred eEEEECCCccccccccccCCCceeeEECCcchHHHHHHHH
Confidence 35668899999996 48999999986323345544333
No 153
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=71.95 E-value=2.4 Score=40.57 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.5
Q ss_pred eeeecCCcccccC---CCCCCcccccc
Q psy10030 32 VIVLAGGQGTRLG---ADYPNRIESIK 55 (484)
Q Consensus 32 ~~~~aggqg~~l~---~~~pkg~~~i~ 55 (484)
+++||||.||||. ...||.+.+++
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~llpi~ 29 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCLLPLA 29 (217)
T ss_pred EEEEcCCCcccccccccCCCceeeEEC
Confidence 5678999999997 58899999875
No 154
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=71.63 E-value=2.3 Score=39.96 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=15.9
Q ss_pred eeeeecCCcccccCCCCCCcccc
Q psy10030 31 AVIVLAGGQGTRLGADYPNRIES 53 (484)
Q Consensus 31 ~~~~~aggqg~~l~~~~pkg~~~ 53 (484)
.+++||||+|||+|. .=|=+.+
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlle 23 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLE 23 (177)
T ss_pred ceEEecCCcccccCC-CcCcchh
Confidence 467899999999985 3333444
No 155
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=71.44 E-value=2.7 Score=43.88 Aligned_cols=27 Identities=37% Similarity=0.672 Sum_probs=22.5
Q ss_pred CeeeeeecCCcccccCC---CCCCcccccc
Q psy10030 29 DVAVIVLAGGQGTRLGA---DYPNRIESIK 55 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~---~~pkg~~~i~ 55 (484)
+..+++||||.||||.. +.||-|.+++
T Consensus 3 ~m~avILAaG~GtRl~plT~~~PK~llpv~ 32 (380)
T PRK05293 3 EMLAMILAGGQGTRLGKLTKNIAKPAVPFG 32 (380)
T ss_pred cEEEEEECCCCCcccchhhcCCccceeeeC
Confidence 45566789999999986 8999999885
No 156
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=71.35 E-value=2.3 Score=45.26 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=25.7
Q ss_pred eeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 32 VIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 32 ~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
+++||||+|||++.+.||.+.+++=.-++.+.+..+
T Consensus 3 aiIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l 38 (451)
T TIGR01173 3 VVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVIDAA 38 (451)
T ss_pred EEEEcCCCCcccCCCCchhhceeCCccHHHHHHHHH
Confidence 567899999999988999999874222335544333
No 157
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=71.08 E-value=3.1 Score=44.56 Aligned_cols=39 Identities=26% Similarity=0.494 Sum_probs=29.2
Q ss_pred CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
++.+++||||.|||+....||.+.+++=.-++.+.+..+
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i~gkpli~~~i~~l 43 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAA 43 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhcceeCChhHHHHHHHHH
Confidence 467788999999999988999999875333445555444
No 158
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=70.59 E-value=2.8 Score=39.98 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=25.2
Q ss_pred eeeecCCcccccCC---CCCCccccccHHHHhhhhhhcc
Q psy10030 32 VIVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 32 ~~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~~~L 67 (484)
+++||||+|||+.. ..||.+.+++=.-++.+.+..+
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l 40 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRL 40 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHH
Confidence 46789999999965 7999999875333445544333
No 159
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=68.48 E-value=3.2 Score=45.03 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=28.2
Q ss_pred CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
++.+++||||.|||++...||.+.+++=.-++.+.+..+
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi~gkpli~~~l~~l 45 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPVAGRPMVAWAVKAA 45 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEECCeeHHHHHHHHH
Confidence 456778999999999988899999984222445544333
No 160
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=68.35 E-value=3.3 Score=43.19 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=21.5
Q ss_pred cCCeeeeeecCCcccccCCCCCCccccc
Q psy10030 27 RGDVAVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 27 ~~~~~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
++.+..++||||+++|+| -+|.+.++
T Consensus 158 ~~~i~~IILAGGkSsRMG--~dKaLL~~ 183 (346)
T PRK14500 158 QTPLYGLVLTGGKSRRMG--KDKALLNY 183 (346)
T ss_pred CCCceEEEEeccccccCC--CCccccee
Confidence 346778889999999998 48998865
No 161
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=68.17 E-value=3.2 Score=42.20 Aligned_cols=35 Identities=31% Similarity=0.295 Sum_probs=25.2
Q ss_pred eeeeeecCCcccccCC---CCCCccccccHHHHhhhhh
Q psy10030 30 VAVIVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGY 64 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~ 64 (484)
..+++||||.||||.. +.||.+.+++=.-++.+.+
T Consensus 4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l 41 (292)
T PRK15480 4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPL 41 (292)
T ss_pred eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHH
Confidence 3457799999999975 8999999875322344433
No 162
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=67.70 E-value=3.3 Score=40.13 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=25.1
Q ss_pred eeeecCCcccccCC---CCCCccccccHHHHhhhhhhc
Q psy10030 32 VIVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGYQE 66 (484)
Q Consensus 32 ~~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~~~ 66 (484)
+++||||.|||+.. ..||.+.+++=.-++.+.+..
T Consensus 3 ~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~ 40 (240)
T cd02538 3 GIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLST 40 (240)
T ss_pred EEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHH
Confidence 46689999999975 789999998632244554433
No 163
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=67.67 E-value=3.5 Score=39.56 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=20.1
Q ss_pred eeeecCCcccccCC---CCCCcccccc
Q psy10030 32 VIVLAGGQGTRLGA---DYPNRIESIK 55 (484)
Q Consensus 32 ~~~~aggqg~~l~~---~~pkg~~~i~ 55 (484)
+++||||.|+|+.. ..||.+.+++
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv~ 29 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPVA 29 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceEC
Confidence 45689999999964 8999999875
No 164
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=67.37 E-value=3.4 Score=40.47 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.1
Q ss_pred eeeecCCcccccCC---CCCCcccccc
Q psy10030 32 VIVLAGGQGTRLGA---DYPNRIESIK 55 (484)
Q Consensus 32 ~~~~aggqg~~l~~---~~pkg~~~i~ 55 (484)
+++||||.|||+.. ..||.+.+++
T Consensus 3 avIlAaG~gtRl~plt~~~pK~llpi~ 29 (260)
T TIGR01099 3 AVIPAAGLGTRFLPATKAIPKEMLPIV 29 (260)
T ss_pred EEEEcccCcccCCCcccCCCceeEEEC
Confidence 56789999999965 7899999865
No 165
>PRK10122 GalU regulator GalF; Provisional
Probab=67.27 E-value=4 Score=41.49 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=22.2
Q ss_pred CeeeeeecCCcccccC---CCCCCcccccc
Q psy10030 29 DVAVIVLAGGQGTRLG---ADYPNRIESIK 55 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~---~~~pkg~~~i~ 55 (484)
++.++++|||.|||+. ...||-|.+|+
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~ 32 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIV 32 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEEC
Confidence 3456778899999997 57899999875
No 166
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=66.68 E-value=3.6 Score=41.89 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=25.6
Q ss_pred eeeeecCCcccccC---CCCCCccccccHHHHhhhhhhcc
Q psy10030 31 AVIVLAGGQGTRLG---ADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 31 ~~~~~aggqg~~l~---~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
.+++||||.||||- ...||-|.+|+=.-++.+-+..+
T Consensus 5 kavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l 44 (297)
T TIGR01105 5 KAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI 44 (297)
T ss_pred EEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHH
Confidence 46678999999997 57899999986222345544333
No 167
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=65.12 E-value=4 Score=41.30 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=20.4
Q ss_pred eeeecCCcccccCC---CCCCcccccc
Q psy10030 32 VIVLAGGQGTRLGA---DYPNRIESIK 55 (484)
Q Consensus 32 ~~~~aggqg~~l~~---~~pkg~~~i~ 55 (484)
+++||||.||||.. ..||.+.+++
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv~ 28 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPIY 28 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEEC
Confidence 46789999999864 8999999984
No 168
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=63.45 E-value=4 Score=39.99 Aligned_cols=36 Identities=33% Similarity=0.411 Sum_probs=24.3
Q ss_pred eeeecCCcccccC---CCCCCccccccHHHHhhhhhhcc
Q psy10030 32 VIVLAGGQGTRLG---ADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 32 ~~~~aggqg~~l~---~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
+++||||.||||. .+.||.|.+++=.-++.+.+..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~ 39 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIY 39 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHH
Confidence 3678899999996 47999999875222334444333
No 169
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=63.25 E-value=20 Score=36.92 Aligned_cols=23 Identities=43% Similarity=0.914 Sum_probs=18.7
Q ss_pred eeeecCCccccc----CCCCCCccccc
Q psy10030 32 VIVLAGGQGTRL----GADYPNRIESI 54 (484)
Q Consensus 32 ~~~~aggqg~~l----~~~~pkg~~~i 54 (484)
-++||||.|||| =..|||+...+
T Consensus 4 pvIlaGG~GsRLWPLSR~~~PKQFl~L 30 (333)
T COG0836 4 PVILAGGSGSRLWPLSRKDYPKQFLKL 30 (333)
T ss_pred eEEEeCCCccccCCcCcccCCccceee
Confidence 356999999998 35799999876
No 170
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=62.57 E-value=4.1 Score=39.02 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=23.2
Q ss_pred eeecCCcccccCC---CCCCccccccHHHHhhhhhhc
Q psy10030 33 IVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGYQE 66 (484)
Q Consensus 33 ~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~~~ 66 (484)
++||||+|||++. ..||.+.+++=.-++.+.+..
T Consensus 2 iIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~ 38 (229)
T cd02523 2 IILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIET 38 (229)
T ss_pred EEEeccCccccchhhCCCCceeeeECCEEHHHHHHHH
Confidence 5688999999964 579999987522234444433
No 171
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=62.36 E-value=4.2 Score=39.22 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=22.1
Q ss_pred eeecCCcccccC---CCCCCccccccHH-HHhhhhh
Q psy10030 33 IVLAGGQGTRLG---ADYPNRIESIKIQ-VYIGHGY 64 (484)
Q Consensus 33 ~~~aggqg~~l~---~~~pkg~~~i~~~-~f~~~~~ 64 (484)
++||||.||||. ...||-+.+++=. -++.+.+
T Consensus 3 vIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l 38 (248)
T PF00483_consen 3 VILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVL 38 (248)
T ss_dssp EEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHH
T ss_pred EEECCCCCccCchhhhccccccceecCCCcchhhhh
Confidence 457899999985 6788888877543 2344433
No 172
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=61.81 E-value=5.1 Score=39.47 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=23.8
Q ss_pred eeeecCCcccccCC---CCCCccccccHHHHhhhhhh
Q psy10030 32 VIVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGYQ 65 (484)
Q Consensus 32 ~~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~~ 65 (484)
+++||||.|||+.. ..||.+.+++=.-++.+.+.
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~ 39 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVE 39 (267)
T ss_pred EEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHH
Confidence 46788999999964 78999998753223344443
No 173
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=61.63 E-value=5.2 Score=38.55 Aligned_cols=37 Identities=30% Similarity=0.500 Sum_probs=26.3
Q ss_pred eeeecCCcccccCC---CCCCccccccHHHHhhhhhhccc
Q psy10030 32 VIVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGYQELS 68 (484)
Q Consensus 32 ~~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~~~L~ 68 (484)
+++||||.|||++. ..||.+.+++=.-++.+.+..+.
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~ 42 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALA 42 (233)
T ss_pred EEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHH
Confidence 46689999999965 78999999764334455444443
No 174
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=61.38 E-value=5.2 Score=42.73 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=24.0
Q ss_pred CCeeeeeecCCcccccCC---CCCCcccccc
Q psy10030 28 GDVAVIVLAGGQGTRLGA---DYPNRIESIK 55 (484)
Q Consensus 28 ~~~~~~~~aggqg~~l~~---~~pkg~~~i~ 55 (484)
.++.+++||||.||||.. ..||-|.+++
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~ 44 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFG 44 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEEC
Confidence 457788899999999976 7999999986
No 175
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=60.65 E-value=4.5 Score=38.02 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=24.4
Q ss_pred eeecCCcccccCC---CCCCccccccHHHHhhhhhhcc
Q psy10030 33 IVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 33 ~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~~~L 67 (484)
++||||.|||++. ..||.+.+++=.-++.+.+..+
T Consensus 2 iIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l 39 (217)
T cd04181 2 VILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERL 39 (217)
T ss_pred EEecCCccccccccccCCCccccEECCeeHHHHHHHHH
Confidence 5689999999974 6899999875323345544333
No 176
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=59.12 E-value=5.9 Score=39.03 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=24.9
Q ss_pred eeeecCCcccccCC---CCCCccccccHHHHhhhhhhccc
Q psy10030 32 VIVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGYQELS 68 (484)
Q Consensus 32 ~~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~~~L~ 68 (484)
+++||||.|||+.. ..||-+.+++=.-++.+.+..+.
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~ 41 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYS 41 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHH
Confidence 46689999999965 39999999742223455444443
No 177
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=58.83 E-value=46 Score=31.32 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=25.1
Q ss_pred EEEEcCCCCccccccCCCccccccCCCCCcHHHHHHHHHHHH
Q psy10030 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL 153 (484)
Q Consensus 112 vviLaGG~GTRLG~~~PKg~~~i~l~~~~s~l~l~~~~i~~l 153 (484)
+||-|=|--+||- =|-+.++ .|+|++++.++++++.
T Consensus 2 aiIpAR~gS~rlp---~Knl~~l---~gkpLi~~~i~~a~~s 37 (217)
T PF02348_consen 2 AIIPARGGSKRLP---GKNLKPL---GGKPLIEYVIERAKQS 37 (217)
T ss_dssp EEEEE-SSSSSST---TGGGSEE---TTEEHHHHHHHHHHHT
T ss_pred EEEecCCCCCCCC---cchhhHh---CCccHHHHHHHHHHhC
Confidence 5667655555552 2556677 8999999999998763
No 178
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=58.71 E-value=5.9 Score=42.35 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.3
Q ss_pred CeeeeeecCCcccccC---CCCCCcccccc
Q psy10030 29 DVAVIVLAGGQGTRLG---ADYPNRIESIK 55 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~---~~~pkg~~~i~ 55 (484)
++.+++||||.||||. ...||-|.+++
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~ 32 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLA 32 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEEC
Confidence 5677889999999997 48999999874
No 179
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=57.73 E-value=7.5 Score=40.35 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=22.5
Q ss_pred CeeeeeecCCcccccC---CCCCCcccccc
Q psy10030 29 DVAVIVLAGGQGTRLG---ADYPNRIESIK 55 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~---~~~pkg~~~i~ 55 (484)
++.+++||||+||||. .+-||.|.+++
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~ 31 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFG 31 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccC
Confidence 5667889999999975 48899999885
No 180
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=56.91 E-value=5.8 Score=40.99 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=19.5
Q ss_pred eeecCCcccccC---CCCCCcccccc
Q psy10030 33 IVLAGGQGTRLG---ADYPNRIESIK 55 (484)
Q Consensus 33 ~~~aggqg~~l~---~~~pkg~~~i~ 55 (484)
++||+|+||||. ...||.|.+++
T Consensus 2 iILAaG~gtRl~plt~~~pK~llpv~ 27 (361)
T TIGR02091 2 MVLAGGRGSRLSPLTKRRAKPAVPFG 27 (361)
T ss_pred EEeCCCCCCccchhhhCCccccceec
Confidence 678999999986 36899999875
No 181
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=54.76 E-value=7.9 Score=41.34 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=26.6
Q ss_pred eeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 31 AVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 31 ~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
.+++||||.||||+...||.+.+++=.-++.+.+..+
T Consensus 4 ~avIlAaG~g~Rl~~~~pK~ll~i~Gkpli~~~l~~l 40 (458)
T PRK14354 4 YAIILAAGKGTRMKSKLPKVLHKVCGKPMVEHVVDSV 40 (458)
T ss_pred eEEEEeCCCCcccCCCCChhhCEeCCccHHHHHHHHH
Confidence 4566889999999988999999984222345544444
No 182
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=52.65 E-value=7.9 Score=38.98 Aligned_cols=11 Identities=73% Similarity=1.325 Sum_probs=9.5
Q ss_pred eeecCCccccc
Q psy10030 33 IVLAGGQGTRL 43 (484)
Q Consensus 33 ~~~aggqg~~l 43 (484)
++||||.||||
T Consensus 4 iILAgG~GTRL 14 (286)
T COG1209 4 VILAGGSGTRL 14 (286)
T ss_pred EEecCcCcccc
Confidence 45899999995
No 183
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=52.12 E-value=8.9 Score=40.86 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=24.7
Q ss_pred eeeecCCcccccCCCCCCccccccHHHHhhhhhh
Q psy10030 32 VIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQ 65 (484)
Q Consensus 32 ~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~ 65 (484)
+++||||+|||+....||-+.+++=.-++.+.+.
T Consensus 3 avIlA~G~gtRl~~~~pK~l~~v~gkpli~~~l~ 36 (448)
T PRK14357 3 ALVLAAGKGTRMKSKIPKVLHKISGKPMINWVID 36 (448)
T ss_pred EEEECCCCCccCCCCCCceeeEECCeeHHHHHHH
Confidence 4668899999999889999998753223445443
No 184
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=51.72 E-value=9.3 Score=36.42 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=22.2
Q ss_pred CeeeeeecCCcccccCCCCCCccccccHHHHhhh
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGH 62 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~ 62 (484)
....++||||+++|. -+|+++.++=..++.+
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~~g~~lie~ 34 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPLNGRPLIEH 34 (192)
T ss_pred CceEEEecCCccccc---cccccceeCCeEHHHH
Confidence 345667999999999 8999997754333333
No 185
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=50.79 E-value=11 Score=40.59 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=27.7
Q ss_pred CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
++..++||||.||||....||-+.+++=.-.+.+.+..+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi~g~pli~~~l~~l 41 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPLAGRPMVSWPVAAA 41 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceeceeCCccHHHHHHHHH
Confidence 355677899999999988999999984222345544433
No 186
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=50.51 E-value=9.3 Score=37.44 Aligned_cols=33 Identities=30% Similarity=0.570 Sum_probs=22.8
Q ss_pred eeecCC--cccccCC---CCCCccccccHHHHhhhhhh
Q psy10030 33 IVLAGG--QGTRLGA---DYPNRIESIKIQVYIGHGYQ 65 (484)
Q Consensus 33 ~~~agg--qg~~l~~---~~pkg~~~i~~~~f~~~~~~ 65 (484)
++|||| .||||.. ..||.+.+++=.-++.+.+.
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~ 39 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIE 39 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHH
Confidence 457788 8999876 88999998752223444333
No 187
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=50.51 E-value=9.9 Score=39.21 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=24.9
Q ss_pred eeeecCCcccccCC---CCCCccccccHHHHhhhhhhcc
Q psy10030 32 VIVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 32 ~~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~~~L 67 (484)
+++||||.||||.. ..||.+.+++=.-++.+.+..+
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l 40 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDL 40 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHH
Confidence 46688999999864 8899999985322344544333
No 188
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=45.74 E-value=15 Score=37.37 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=24.2
Q ss_pred eeeeecCCcccccCC---CCCCccccccHHHHhhhhhh
Q psy10030 31 AVIVLAGGQGTRLGA---DYPNRIESIKIQVYIGHGYQ 65 (484)
Q Consensus 31 ~~~~~aggqg~~l~~---~~pkg~~~i~~~~f~~~~~~ 65 (484)
.++++|+|.|||+.. ..||-+.+++=.-++.+.+.
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~ 47 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVN 47 (302)
T ss_pred EEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHH
Confidence 356689999999965 79999998753223344343
No 189
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=44.45 E-value=16 Score=38.97 Aligned_cols=36 Identities=25% Similarity=0.539 Sum_probs=28.3
Q ss_pred eeeeeecCCcccccCCCCCCccccccHHHHhhhhhh
Q psy10030 30 VAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQ 65 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~ 65 (484)
..+++||.|+|||.-++-||=+.++.=..++.|-++
T Consensus 3 ~~~vILAAGkGTRMkS~lPKVLH~vaGkpMl~hVi~ 38 (460)
T COG1207 3 LSAVILAAGKGTRMKSDLPKVLHPVAGKPMLEHVID 38 (460)
T ss_pred ceEEEEecCCCccccCCCcccchhccCccHHHHHHH
Confidence 467789999999999999999998865445555443
No 190
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=42.85 E-value=18 Score=34.81 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=24.1
Q ss_pred eeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 30 VAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 30 ~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
+.++++|+|.++|++ ||-+.+++=.-++.+.+..+
T Consensus 2 ~~~iIlA~g~s~R~~---~K~l~~i~gkpll~~~l~~l 36 (239)
T cd02517 2 VIVVIPARYASSRLP---GKPLADIAGKPMIQHVYERA 36 (239)
T ss_pred EEEEEecCCCCCCCC---CCCCcccCCcCHHHHHHHHH
Confidence 567889999999996 79999875222345544333
No 191
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=42.16 E-value=17 Score=38.91 Aligned_cols=27 Identities=41% Similarity=0.518 Sum_probs=22.9
Q ss_pred CeeeeeecCCcccccC---CCCCCcccccc
Q psy10030 29 DVAVIVLAGGQGTRLG---ADYPNRIESIK 55 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~---~~~pkg~~~i~ 55 (484)
++.+++||||-||||. ...||.+.+++
T Consensus 3 ~~~aIIlA~G~gtRl~PlT~~~PK~llpv~ 32 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPLTKRRAKPAVPIG 32 (436)
T ss_pred ceEEEEEeCCCCCcchhhhcCCcccceEeC
Confidence 4567789999999997 68999999985
No 192
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=41.67 E-value=25 Score=38.34 Aligned_cols=106 Identities=23% Similarity=0.223 Sum_probs=56.0
Q ss_pred CCCcccceEE--E-ECCe--EEEEEeccCCcccccccccC-CCcccccccceeeeeecHHHHHHHhhccccchhhhhccC
Q psy10030 290 TPGESLGVLC--N-VDGK--HKIVEYSELGNCSVFETQDQ-TGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKK 363 (484)
Q Consensus 290 ~~~e~~G~l~--~-~~g~--~~vvEyse~~~e~~~~~~~~-~g~~~f~~~Ni~~~~~~l~~l~~~~~~~~~Lp~~~~~K~ 363 (484)
+-+|.+|.-= . .||. ++|||-+|++.. -.+.+.. ...-.|++.-+ .+.+. ..-.....|+-++.+++
T Consensus 385 NeGEPGGGPFwv~~~dG~~SLQIvEssQId~~-~~~q~~if~~~THFNPVDL---VCgvk---dykG~kFdL~~fvD~~t 457 (513)
T PF14134_consen 385 NEGEPGGGPFWVKNEDGTVSLQIVESSQIDMS-NPEQKEIFKNSTHFNPVDL---VCGVK---DYKGEKFDLPDFVDPNT 457 (513)
T ss_pred cCCCCCCCCeEEECCCCCEeeeeehhhhcCCC-CHHHHHHHHcCCCCCccce---Eeecc---CCCCCcCCchhccCCCC
Confidence 3567776533 2 3675 679999999876 2221110 11123444433 33321 11111234555555443
Q ss_pred CCcc---CCCCCeecCCCCccchhhhhhhcccc-----cCC-ceEEEEEeccccccccCCC
Q psy10030 364 IPCL---DEQGISQRPNKPNGIKLEKFLFDAFP-----LCE-NLVAWEVTRDEFSPLKNSP 415 (484)
Q Consensus 364 ip~~---d~~g~~~~p~~pn~~klE~~i~D~~~-----~~~-~~~~~~V~R~~FsPvKn~~ 415 (484)
. ++ ..+|+.+| .||. .. +++ +.+.+|||-..|.|||+-.
T Consensus 458 g-FIs~KSk~Gk~LK-------AlEL-----PGLWNGaMa~WnTvFVEVPl~TFNPVKTVn 505 (513)
T PF14134_consen 458 G-FISEKSKNGKELK-------ALEL-----PGLWNGAMADWNTVFVEVPLITFNPVKTVN 505 (513)
T ss_pred c-eeeecCCCCccch-------hhcc-----CCcccchhcCCceEEEEeccccCCCccchh
Confidence 2 22 23566555 3442 11 122 6889999999999999864
No 193
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=38.98 E-value=22 Score=34.37 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=25.6
Q ss_pred CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhccc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELS 68 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L~ 68 (484)
+++++++|+|+++|++ ||.+.+++=.-++.+.+..+.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i~Gkpll~~~l~~l~ 38 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADIGGKPMIVRVYERAS 38 (245)
T ss_pred ceEEEEecCCCCCCCC---CCcccccCCcCHHHHHHHHHH
Confidence 4677889999999995 799998742223455444443
No 194
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=38.64 E-value=22 Score=33.57 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=18.7
Q ss_pred CeeeeeecCCcccccCCCCCCccccc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
+++++++|+|.++|++ .|.+.++
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l 23 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL 23 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh
Confidence 4678889999999995 4778766
No 195
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=36.19 E-value=27 Score=38.08 Aligned_cols=25 Identities=36% Similarity=0.675 Sum_probs=19.8
Q ss_pred eeeeeecCCcccccC----CCCCCccccc
Q psy10030 30 VAVIVLAGGQGTRLG----ADYPNRIESI 54 (484)
Q Consensus 30 ~~~~~~aggqg~~l~----~~~pkg~~~i 54 (484)
.-+++||||.||||= ..+||++.++
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l 34 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCL 34 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeEC
Confidence 345679999999974 2479999988
No 196
>KOG0734|consensus
Probab=31.94 E-value=41 Score=37.28 Aligned_cols=55 Identities=33% Similarity=0.602 Sum_probs=39.3
Q ss_pred CccccccCCCccccccCC-CCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCC--------chHHHHHHHHc
Q psy10030 120 GTRLGADYPKGMYNIGLP-SGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELT--------DRPTREYFERN 187 (484)
Q Consensus 120 GTRLG~~~PKg~~~i~l~-~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t--------~e~t~~~l~~~ 187 (484)
=||||-..|||.+=+|.| .|||+|.- - . -|+..||++.|.-..= ...+++.|...
T Consensus 329 ftrLGGKLPKGVLLvGPPGTGKTlLAR---A------v----AGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aA 392 (752)
T KOG0734|consen 329 FTRLGGKLPKGVLLVGPPGTGKTLLAR---A------V----AGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAA 392 (752)
T ss_pred hhhccCcCCCceEEeCCCCCchhHHHH---H------h----hcccCCCeEeccccchhhhhhcccHHHHHHHHHHH
Confidence 489999999999989987 69998851 1 1 2446699988876543 33567777653
No 197
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=31.76 E-value=34 Score=32.93 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=25.8
Q ss_pred ccCCeeeeeecCCcccccCCCCCCccccccHHHHhhh
Q psy10030 26 SRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGH 62 (484)
Q Consensus 26 ~~~~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~ 62 (484)
+...|+.++||-|.++|+| .+|-++++.=.-.+.+
T Consensus 2 ~~~~v~~VvLAAGrssRmG--~~KlLap~~g~plv~~ 36 (199)
T COG2068 2 RPSTVAAVVLAAGRSSRMG--QPKLLAPLDGKPLVRA 36 (199)
T ss_pred CCcceEEEEEcccccccCC--CcceecccCCCcHHHH
Confidence 3567889999999999999 7888876644333333
No 198
>KOG2638|consensus
Probab=31.30 E-value=29 Score=36.99 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=24.9
Q ss_pred CCeeeeeecCCcccccCCCCCCccccc
Q psy10030 28 GDVAVIVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 28 ~~~~~~~~aggqg~~l~~~~pkg~~~i 54 (484)
.|.||+=|-||-||..|..+||-+.++
T Consensus 102 ~KLavlKLNGGlGttmGc~gPKS~ieV 128 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMGCKGPKSVIEV 128 (498)
T ss_pred hheEEEEecCCcCCccccCCCceeEEE
Confidence 688999999999999999999988864
No 199
>KOG1322|consensus
Probab=30.80 E-value=1.3e+02 Score=31.44 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=21.7
Q ss_pred ccEEEEeCCCCch-HHHHHHHHcCCCCCC
Q psy10030 166 LPWFIMTSELTDR-PTREYFERNGYFGLD 193 (484)
Q Consensus 166 ipl~iMtS~~t~e-~t~~~l~~~~~fgl~ 193 (484)
-|+++++|++.-+ ..+++++.|...|-+
T Consensus 113 ~~ffVLnsDvi~~~p~~~~vqfH~~~gae 141 (371)
T KOG1322|consen 113 APFFVLNSDVICRMPYKEMVQFHRAHGAE 141 (371)
T ss_pred CcEEEecCCeeecCCHHHHHHHHHhcCCc
Confidence 4999999999776 677777777766644
No 200
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=30.03 E-value=18 Score=35.76 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=50.2
Q ss_pred HhchhcccCCCEEEEEEcCCCCccccccCCCccccc----cCCCCCcHHHHH----HHHHHHHHHHHHHhhCCccccEEE
Q psy10030 99 ELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNI----GLPSGKSLFQIQ----AEKIDKLIEIAKEKFGSGCLPWFI 170 (484)
Q Consensus 99 ~~G~~~i~~gkvavviLaGG~GTRLG~~~PKg~~~i----~l~~~~s~l~l~----~~~i~~l~~l~~~~~g~~~ipl~i 170 (484)
..++++.++||+..+++.||.++. +++-|..|... |+|...=++|.. .+.+.... +.++ .-+++|
T Consensus 71 ~~A~~LYk~gk~~~ilvSGg~~~~-~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~----~i~~--~~~~iI 143 (239)
T PRK10834 71 QGAINAYNSGKVNYLLLSGDNALQ-SYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTR----KVFD--TNDFII 143 (239)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCC-CCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHH----HHhC--CCCEEE
Confidence 467888899999999999998754 56666655432 334221111111 11121111 2233 135788
Q ss_pred EeCCCCchHHHHHHHHcCCCCCC
Q psy10030 171 MTSELTDRPTREYFERNGYFGLD 193 (484)
Q Consensus 171 MtS~~t~e~t~~~l~~~~~fgl~ 193 (484)
.||.+--....-.+++ +|++
T Consensus 144 VTq~fHm~RA~~ia~~---~Gi~ 163 (239)
T PRK10834 144 ITQRFHCERALFIALH---MGIQ 163 (239)
T ss_pred ECCHHHHHHHHHHHHH---cCCc
Confidence 8998877777777765 6765
No 201
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=29.68 E-value=4.3e+02 Score=24.01 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=18.6
Q ss_pred CCCccccccCCCC--CcHHHHHHHHHH
Q psy10030 127 YPKGMYNIGLPSG--KSLFQIQAEKID 151 (484)
Q Consensus 127 ~PKg~~~i~l~~~--~s~l~l~~~~i~ 151 (484)
.+|.++++ .| +|++++.++.+.
T Consensus 3 ~dK~ll~~---~g~~~~ll~~~~~~l~ 26 (178)
T PRK00576 3 RDKATLPL---PGGTTTLVEHVVGIVG 26 (178)
T ss_pred CCCEeeEe---CCCCcCHHHHHHHHHh
Confidence 48999988 67 999999998664
No 202
>KOG1461|consensus
Probab=26.72 E-value=9.9e+02 Score=27.21 Aligned_cols=138 Identities=13% Similarity=0.174 Sum_probs=85.1
Q ss_pred CCEEEEEEcCCCCcccc---ccCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHH
Q psy10030 108 GDVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYF 184 (484)
Q Consensus 108 gkvavviLaGG~GTRLG---~~~PKg~~~i~l~~~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l 184 (484)
..+.+|+||----||+. .+.|+.++|+ .+-+++++.++.+-+ .| |.-+++--.....++.+|+
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPl---aNVpmIdYtL~~L~~--------ag---V~eVfvfc~~~~~qi~e~i 88 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPL---ANVPMIDYTLEWLER--------AG---VEEVFVFCSAHAAQIIEYI 88 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeee---cCchHHHHHHHHHHh--------cC---ceEEEEEecccHHHHHHHH
Confidence 46889999999999965 4899999999 999999999888843 44 5544444445567789999
Q ss_pred HHcCCCCCCCC-cEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHHHHcCCeEEEEEeCCCCcc
Q psy10030 185 ERNGYFGLDPA-HVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV 263 (484)
Q Consensus 185 ~~~~~fgl~~~-~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l~~~G~~~i~v~~vDN~l~ 263 (484)
++..|. ++.. .|.+..=+ .. ---||+.+-+...++.- -.+.+.++|.+..
T Consensus 89 ~~sew~-~~~~~~v~ti~s~------------------~~---~S~GDamR~id~k~lit-------gDFiLVsgd~vsN 139 (673)
T KOG1461|consen 89 EKSEWY-LPMSFIVVTICSG------------------ES---RSVGDAMRDIDEKQLIT-------GDFILVSGDTVSN 139 (673)
T ss_pred hhcccc-ccccceEEEEcCC------------------Cc---CcHHHHHHHHHhcceee-------cceEEEeCCeeec
Confidence 885543 3322 11111000 00 23589999887765442 3455666676643
Q ss_pred ccCCHHHHHHHHH---cCCceEEEEEEcc
Q psy10030 264 KVGDPTFLGYCVE---QGAHCGVKVVEKI 289 (484)
Q Consensus 264 ~~~Dp~~lg~~~~---~~~~~~~~vv~k~ 289 (484)
..--..|-.|.. .+.+..|..+-|.
T Consensus 140 -~pl~~~l~eHr~r~k~Dk~~iMTmv~k~ 167 (673)
T KOG1461|consen 140 -MPLRNVLEEHRKRRKEDKDAIMTMVFKE 167 (673)
T ss_pred -CchHHHHHHHHHHhhhCccceEEEEEec
Confidence 333446777743 2334444444444
No 203
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.58 E-value=5.3e+02 Score=24.72 Aligned_cols=94 Identities=17% Similarity=0.286 Sum_probs=58.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhCCccccEEEEeCCC-CchHHHHHHHHcCCCC--CCCCcEEEEEcCCccccccCCccc
Q psy10030 139 GKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSEL-TDRPTREYFERNGYFG--LDPAHVIFFKQRSMPCFSLSGEIL 215 (484)
Q Consensus 139 ~~s~l~l~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~-t~e~t~~~l~~~~~fg--l~~~~v~~f~Q~~~P~~~~~g~~~ 215 (484)
+-+..+-.++.|.+|..-+. ..| ||++--.-.. ..+.-+..|++ ++| ++... .+-+++
T Consensus 49 ~~~~~~~li~Ni~~Lr~~~~-~~g---iPVvyTaqp~~qs~~draLL~d--~WGpgl~~~p-------------~~~~vv 109 (218)
T COG1535 49 NCPLMEQLIANIAKLRIWCK-QAG---IPVVYTAQPGEQSPEDRALLKD--FWGPGLTASP-------------EQQKVV 109 (218)
T ss_pred CCccHHHHHHHHHHHHHHHH-HcC---CcEEEEecCCcCCHHHHHHHHH--hcCCCCCCCh-------------hhhhhH
Confidence 44456777888888887663 456 9988766555 45556667764 455 32110 011111
Q ss_pred ccCCCcceeccCCCch------HhHHHhhcChHHHHHHcCCeEEEEEeC
Q psy10030 216 LETRDRVARSPDGHGG------LYHALGATGILDTMHTRGIKHIHVYCV 258 (484)
Q Consensus 216 l~~~~~i~~~P~G~Gg------i~~~L~~~G~l~~l~~~G~~~i~v~~v 258 (484)
...-+|.+| -|.++++|.+++.|.+.|+..+.|..|
T Consensus 110 -------~~l~P~~~D~vL~kwrYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 110 -------DELAPGADDTVLTKWRYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred -------HhcCCCCCceEEeeeehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 111123333 389999999999999999998777654
No 204
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=25.48 E-value=40 Score=34.16 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=15.0
Q ss_pred eeccCCCchHhHHHhhcChH
Q psy10030 223 ARSPDGHGGLYHALGATGIL 242 (484)
Q Consensus 223 ~~~P~G~Ggi~~~L~~~G~l 242 (484)
...|.|+||+|.+|.-.++|
T Consensus 209 ~~~~~GtGDL~sallla~lL 228 (281)
T COG2240 209 PFIPNGTGDLFSALLLARLL 228 (281)
T ss_pred CCCCCCchHHHHHHHHHHHH
Confidence 33499999999999765444
No 205
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=25.40 E-value=1.5e+02 Score=26.16 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=14.1
Q ss_pred ccccEEEEeCCCCchHHHHHHH
Q psy10030 164 GCLPWFIMTSELTDRPTREYFE 185 (484)
Q Consensus 164 ~~ipl~iMtS~~t~e~t~~~l~ 185 (484)
.++|.++++...--+...++++
T Consensus 83 ~~~Piil~~~~g~w~~l~~~l~ 104 (133)
T PF03641_consen 83 NKVPIILLNIDGFWDPLLEFLD 104 (133)
T ss_dssp TS-EEEEEECGGCCHHHHHHHH
T ss_pred cCCCEEEeCCcchHHHHHHHHH
Confidence 4569999886655555666663
No 206
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=25.00 E-value=43 Score=32.67 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=16.9
Q ss_pred eeeecCCcccccCCCCCCcccccc
Q psy10030 32 VIVLAGGQGTRLGADYPNRIESIK 55 (484)
Q Consensus 32 ~~~~aggqg~~l~~~~pkg~~~i~ 55 (484)
++++|+|+|||++ +|.+.+++
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l~ 22 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDIF 22 (238)
T ss_pred EEEecCCCCCCCC---CCeecccC
Confidence 5678999999994 78888663
No 207
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=24.64 E-value=46 Score=35.31 Aligned_cols=16 Identities=56% Similarity=1.007 Sum_probs=12.3
Q ss_pred CCeeeeeecCCccccc
Q psy10030 28 GDVAVIVLAGGQGTRL 43 (484)
Q Consensus 28 ~~~~~~~~aggqg~~l 43 (484)
.++-+++||||+|+||
T Consensus 4 ~~~laiILaGg~G~rL 19 (393)
T COG0448 4 KNVLAIILAGGRGSRL 19 (393)
T ss_pred cceEEEEEcCCCCCcc
Confidence 3455566899999998
No 208
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=22.93 E-value=2.3e+02 Score=21.85 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=35.9
Q ss_pred ccEEEEeCCCCchHHHHHHHHcCCCCCCCCcEEEEEcCCccccccCCcccccCCCcceeccCCCchHhHHHhhcChHHHH
Q psy10030 166 LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTM 245 (484)
Q Consensus 166 ipl~iMtS~~t~e~t~~~l~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~~G~l~~l 245 (484)
++++-.+.....+.+++++.+. +| +..+|.+-.+|+ +-|+-+-+.++.++|-|..+
T Consensus 28 ~~~~~v~~~~~~~~~~~~l~~~--~g----------~~~vP~v~i~g~------------~igg~~~~~~~~~~g~l~~~ 83 (84)
T TIGR02180 28 YEVVELDQLSNGSEIQDYLEEI--TG----------QRTVPNIFINGK------------FIGGCSDLLALYKSGKLAEL 83 (84)
T ss_pred CEEEEeeCCCChHHHHHHHHHH--hC----------CCCCCeEEECCE------------EEcCHHHHHHHHHcCChhhh
Confidence 4466666666667777877763 22 245666555554 24666778888888888765
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=22.86 E-value=44 Score=30.42 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCcEEEcCCCCCeeEEEccceeeecCCcccc
Q psy10030 431 HALHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEER 471 (484)
Q Consensus 431 ~~~~~~~l~~~g~~~~~~~~~~~~ieisp~vsy~gE~l~~~ 471 (484)
..+.++||+.+|+. ||.+.-++.|||++++
T Consensus 108 i~~a~~~L~~aG~~-----------~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 108 IERAKKWLKNAGVK-----------EIFEVSAVTGEGIEEL 137 (143)
T ss_pred HHHHHHHHHHcCCC-----------CeEEEECCCCcCHHHH
Confidence 45678999999984 3445557899999864
No 210
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=22.11 E-value=1.7e+02 Score=26.96 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhCCccccEEEEeCCCCchHHHHHHHHc
Q psy10030 146 QAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN 187 (484)
Q Consensus 146 ~~~~i~~l~~l~~~~~g~~~ipl~iMtS~~t~e~t~~~l~~~ 187 (484)
..+++..++..+.++|| .|++|...+.+.+.|.+-++..
T Consensus 92 ~~~~L~~lN~~Y~~kFG---fpFvi~v~g~~~~~Il~~l~~R 130 (157)
T TIGR03164 92 EFARFTRLNNAYRARFG---FPFIMAVKGKTKQSILAAFEAR 130 (157)
T ss_pred HHHHHHHHHHHHHHHCC---CeeEEeeCCCCHHHHHHHHHHH
Confidence 45788888888889999 9999999999999999998863
No 211
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=21.70 E-value=66 Score=30.81 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=23.5
Q ss_pred CeeeeeecCCcccccCCCCCCccccccHHHHhhhhhhcc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQEL 67 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~~~~f~~~~~~~L 67 (484)
++.++++|+|.++|++ +|-+.+++=.-++.+.+..+
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i~GkPli~~~i~~l 37 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDILGKPMIQHVYERA 37 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCccCCcCHHHHHHHHH
Confidence 3667889999999995 48888775222334444333
No 212
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=21.51 E-value=56 Score=31.34 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.4
Q ss_pred eeecCCcccccCCCCCCccccc
Q psy10030 33 IVLAGGQGTRLGADYPNRIESI 54 (484)
Q Consensus 33 ~~~aggqg~~l~~~~pkg~~~i 54 (484)
++||+|+++|++ +|.+.++
T Consensus 3 iIlA~G~S~R~~---~K~ll~l 21 (233)
T cd02518 3 IIQARMGSTRLP---GKVLKPL 21 (233)
T ss_pred EEeeCCCCCCCC---CCccccc
Confidence 568899999995 5888766
No 213
>PLN02917 CMP-KDO synthetase
Probab=21.38 E-value=65 Score=32.67 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=19.9
Q ss_pred CeeeeeecCCcccccCCCCCCcccccc
Q psy10030 29 DVAVIVLAGGQGTRLGADYPNRIESIK 55 (484)
Q Consensus 29 ~~~~~~~aggqg~~l~~~~pkg~~~i~ 55 (484)
++.++++|+|+++|++ +|-+.+++
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~L~~i~ 70 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKPLVHIL 70 (293)
T ss_pred cEEEEEecCCCCCCCC---CCCeeeEC
Confidence 6678889999999995 58888764
Done!