RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10030
(484 letters)
>gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes
the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine
(UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P
uridyltransferase), catalyzes the reversible conversion
of UTP and GlcNAc1 to PPi and UDPGlcNAc.
UDP-N-acetylglucosamine (UDPGlcNAc), the activated form
of GlcNAc, is a key precursor of N- and O-linked
glycosylations. It is essential for the synthesis of
chitin (a major component of the fungal cell wall) and
of the glycosylphosphatidylinositol (GPI) linker which
anchors a variety of cell surface proteins to the plasma
membrane. In bacteria, UDPGlcNAc represents an essential
precursor for both peptidoglycan and lipopolysaccharide
biosynthesis. Human UAP has two isoforms, resulting from
alternative splicing of a single gene and differing by
the presence or absence of 17 amino acids. UDPGlcNAc
pyrophosphorylase shares significant sequence and
structure conservation with UDPglucose
pyrophosphorylase.
Length = 323
Score = 482 bits (1244), Expect = e-170
Identities = 172/323 (53%), Positives = 230/323 (71%), Gaps = 4/323 (1%)
Query: 96 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
++ E GLK I+ G VAV++LAGGQGTRLG D PKGM+ +GLPS KSLFQ+QAE+I KL E
Sbjct: 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQE 61
Query: 156 IAKEKFG-SGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEI 214
+A E G +PW+IMTSE T TR++F+ N YFGLDP V FF+Q +PC G+I
Sbjct: 62 LAGEASGKKVPIPWYIMTSEATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKI 121
Query: 215 LLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYC 274
LLE + ++A +P+G+GGLY AL GIL+ M RGIK+IHVY VDNILVKV DP F+G+C
Sbjct: 122 LLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVADPVFIGFC 181
Query: 275 VEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGS 334
+ +GA G KVV K P E +GV+ VDGK ++VEYSE+ + + D G L++N G+
Sbjct: 182 ISKGADVGAKVVRKRYPTEKVGVVVLVDGKPQVVEYSEISDELAEKR-DADGELQYNAGN 240
Query: 335 ICNHYFSLECLQRMVKEDAA-LKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFP 393
I NH+FSL+ L++ + + L +H+A+KKIP +D +G +P++PNGIKLE F+FD FP
Sbjct: 241 IANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFP 300
Query: 394 LCENLVAWEVTR-DEFSPLKNSP 415
+N V EV R +EFSPLKN+
Sbjct: 301 FAKNFVCLEVDREEEFSPLKNAD 323
Score = 61.5 bits (150), Expect = 2e-10
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 16 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
++ E GLK I+ G VAV++LAGGQGTRLG D P
Sbjct: 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGP 34
>gnl|CDD|215238 PLN02435, PLN02435, probable UDP-N-acetylglucosamine
pyrophosphorylase.
Length = 493
Score = 349 bits (896), Expect = e-115
Identities = 173/427 (40%), Positives = 255/427 (59%), Gaps = 29/427 (6%)
Query: 69 GVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 128
G+ + ++ P N +S V ++ ++GLK IS G +AV++L+GGQGTRLG+ P
Sbjct: 76 GLPVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDP 135
Query: 129 KGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-----LPWFIMTSELTDRPTREY 183
KG +NIGLPSGKSLFQ+QAE+I + +A + G + W+IMTS TD TR++
Sbjct: 136 KGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKF 195
Query: 184 FERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILD 243
FE + YFGL+ V FF+Q ++PC S G+ ++ET +VA++PDG+GG+Y AL ++ +L+
Sbjct: 196 FESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLE 255
Query: 244 TMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN--V 301
M +RGIK++ Y VDN LV+V DPTFLGY +++G KVV K P E +GV
Sbjct: 256 DMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGK 315
Query: 302 DGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRM---VKEDAALKFH 358
G +VEYSEL QTGRL++ ++C H F+L+ L ++ +++D+ +H
Sbjct: 316 GGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSI--YH 373
Query: 359 MARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLD 417
+A KKIP + G + G+KLE+F+FDAFP + +EV R +EF+P+KN+
Sbjct: 374 LAEKKIPSIH--GYTM------GLKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNAN-G 424
Query: 418 SASDNPVTCCQAVHALHARWIETAGGVVVAD----ETGNTVCEIAPRVSYEGEGLEERVK 473
S D P + V LH RW+ AGG + TG E++P SY GE LE +
Sbjct: 425 SNFDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATG---VEVSPLCSYAGENLEAICR 481
Query: 474 GKVLQTP 480
G+ P
Sbjct: 482 GRTFHAP 488
Score = 48.7 bits (116), Expect = 5e-06
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 4 SGVNTVDASTLG---KYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
+ V+TV+ T ++ ++GLK IS G +AV++L+GGQGTRLG+ P
Sbjct: 88 NSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDP 135
>gnl|CDD|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase;
Provisional.
Length = 482
Score = 330 bits (849), Expect = e-109
Identities = 154/414 (37%), Positives = 233/414 (56%), Gaps = 15/414 (3%)
Query: 79 PPNCLSGVNTV-DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLP 137
PPN + ++ + +E GL++I +G+VAV++LAGG GTRLG+D PKG+
Sbjct: 75 PPNNNTFIDIYEKEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPV 134
Query: 138 SGKSLFQIQAEKIDKLIEIAKEKFGSG---CLPWFIMTSELTDRPTREYFERNGYFGLDP 194
K+LFQ EK+ +L E+A G G + ++TS TR++ E N +FGLD
Sbjct: 135 KKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDK 194
Query: 195 AHVIFFKQRSMPCFSL-SGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHI 253
VIFFKQ S+PC+ +G ++ ++ + +P G+G ++ AL L + +GIK++
Sbjct: 195 EQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYV 254
Query: 254 HVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSEL 313
V +DNIL KV DP F+G AH + K ES+GV C D + ++VEY+E+
Sbjct: 255 QVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYEWQVVEYTEI 314
Query: 314 GNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE--DAALKFHMARKKIPCLDEQG 371
+ + TG L FN G+IC+H FSL+ L+++ + +H ARKKIP
Sbjct: 315 NERILNNDELLTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPY----- 369
Query: 372 ISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAV 430
I+ +K GIKLE F+FD F +N++ EV R DEF+P+KN+ +A+D + + +
Sbjct: 370 INGPTDKTMGIKLEAFIFDIFRYAKNVLILEVDREDEFAPIKNAD-GAAADTILNAQKLL 428
Query: 431 HALHARWIETAGGVVVA-DETGNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLL 483
+LH RW+E A V G +CEI+P VSY GEGL + K+L P +L
Sbjct: 429 LSLHTRWLEAALETVAGNPREGLNLCEISPLVSYGGEGLFQYPGKKILGLPEIL 482
Score = 46.7 bits (111), Expect = 2e-05
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 10 DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
+ +E GL++I +G+VAV++LAGG GTRLG+D P
Sbjct: 87 KEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKP 125
>gnl|CDD|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 472
Score = 271 bits (695), Expect = 7e-86
Identities = 139/413 (33%), Positives = 192/413 (46%), Gaps = 29/413 (7%)
Query: 83 LSGVNTVDASTLGKYRELGLKL--ISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGK 140
+ N D K G L I G +AV+ LAGGQGTRLG D PKG++ + GK
Sbjct: 77 IRPPNPDDVVDYEKKILEGWGLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGK 134
Query: 141 SLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFF 200
SLF +QAE+I L +P +IMTS L T YF+ N YFGLD + FF
Sbjct: 135 SLFDLQAEQIKYLNRQYNVD-----VPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFF 188
Query: 201 KQRSMP-CFSLSGEILLETRDR-VARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCV 258
Q P S SG LE+ D +A P G+G L+ AL ++GIL+ + +GI+++ V +
Sbjct: 189 VQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNI 248
Query: 259 DNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSV 318
DN L D FLG+ E ++ +K E +G+L DGK +++EYSE+ N
Sbjct: 249 DN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTYDGKLRLLEYSEVPNEHR 307
Query: 319 FETQDQTGRLKFNLG-SICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPN 377
E G+LK+ +I H FS++ L+ + L H A KKIP LD
Sbjct: 308 EEF-TSDGKLKYFNTNNIWLHLFSVKFLKEAAYLN--LPIHKAIKKIPQLDNIIQLTTAI 364
Query: 378 KPNGIKLEK-FL-FDAFPL--CENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHA 432
N K E F+ FD F EN V R EFSPLKN S DN T +
Sbjct: 365 GKNISKFENEFIPFDLFLYKSDENGGLLLVPRFGEFSPLKNLE-GSHFDNVETFTCGIPR 423
Query: 433 LHARWIETAGGVVVADETGNTVCEIAPRVSYEGEGLEERVKGK-VLQTPLLLE 484
+E G + +GN + + Y E + K L+ ++
Sbjct: 424 -IPLILELEGLTI----SGNVLFGRNVTLKYASENTSLCIPNKSFLENVIITG 471
Score = 44.3 bits (105), Expect = 1e-04
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 3 LSGVNTVDASTLGKYRELGLKL--ISRGDVAVIVLAGGQGTRLGADYP 48
+ N D K G L I G +AV+ LAGGQGTRLG D P
Sbjct: 77 IRPPNPDDVVDYEKKILEGWGLLKIKLGKLAVLKLAGGQGTRLGCDGP 124
>gnl|CDD|133023 cd04180, UGPase_euk_like, Eukaryotic UGPase-like includes UDPase
and UDPGlcNAc pyrophosphorylase enzymes. This family
includes UDP-Glucose Pyrophosphorylase (UDPase) and
UDPGlcNAc pyrophosphorylase enzymes. The two enzymes
share significant sequence and structure similarity.
UDP-Glucose Pyrophosphorylase catalyzes a reversible
production of UDP-Glucose and pyrophosphate (PPi) from
Glucose-1-phosphate and UTP. UDP-glucose plays pivotal
roles in galactose utilization, in glycogen synthesis,
and in the synthesis of the carbohydrate moieties of
glycolipids , glycoproteins , and proteoglycans .
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase
(UAP) (also named GlcNAc1P uridyltransferase), catalyzes
the reversible conversion of UTP and GlcNAc1P from PPi
and UDPGlcNAc, which is a key precursor of N- and
O-linked glycosylations and is essential for the
synthesis of chitin (a major component of the fungal
cell wall) and of the glycosylphosphatidylinositol (GPI)
linker anchoring a variety of cell surface proteins to
the plasma membrane. In bacteria, UDPGlcNAc represents
an essential precursor for both peptidoglycan and
lipopolysaccharide biosynthesis.
Length = 266
Score = 215 bits (549), Expect = 6e-67
Identities = 87/312 (27%), Positives = 131/312 (41%), Gaps = 54/312 (17%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-LPW 168
VAV++LAGG GTRLG D PK ++GLPSG+ Q+ EKI L +E C +P
Sbjct: 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTL----QEIDLYSCKIPE 56
Query: 169 FIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDG 228
+M S+ T T+ YFE+ ++VI F Q +P + + + P G
Sbjct: 57 QLMNSKYTHEKTQCYFEKIN---QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCG 113
Query: 229 HGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEK 288
HG + AL +G L+ + +G ++IH VDN+LVKV DP F+G ++ KVV K
Sbjct: 114 HGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFIGIAIQNRKAINQKVVPK 173
Query: 289 ITPGESLGVLCNVD-GKHKIVEYSELGNC---SVFETQDQT--GRLKFNLGSICNHYFSL 342
ES G G+ +++EY ++ + Q F L + N L
Sbjct: 174 TRNEESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFL 233
Query: 343 ECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWE 402
+ V D +++V
Sbjct: 234 VEFKDRVD---------------------------------------DIIEFTDDIVGVM 254
Query: 403 VTR-DEFSPLKN 413
V R +EF+P+KN
Sbjct: 255 VHRAEEFAPVKN 266
Score = 34.1 bits (78), Expect = 0.14
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
VAV++LAGG GTRLG D P
Sbjct: 1 VAVVLLAGGLGTRLGKDGP 19
>gnl|CDD|201928 pfam01704, UDPGP, UTP--glucose-1-phosphate uridylyltransferase.
This family consists of UTP--glucose-1-phosphate
uridylyltransferases, EC:2.7.7.9. Also known as
UDP-glucose pyrophosphorylase (UDPGP) and
Glucose-1-phosphate uridylyltransferase.
UTP--glucose-1-phosphate uridylyltransferase catalyzes
the interconversion of MgUTP + glucose-1-phosphate and
UDP-glucose + MgPPi. UDP-glucose is an important
intermediate in mammalian carbohydrate interconversion
involved in various metabolic roles depending on tissue
type. In Dictyostelium (slime mold) mutants in this
enzyme abort the development cycle. Also within the
family is UDP-N-acetylglucosamine or AGX1 and two
hypothetical proteins from Borrelia burgdorferi the lyme
disease spirochaete.
Length = 417
Score = 186 bits (474), Expect = 5e-54
Identities = 86/335 (25%), Positives = 152/335 (45%), Gaps = 35/335 (10%)
Query: 89 VDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAE 148
VD L + +AV+ L GG GT +G PK M + +G + + +
Sbjct: 34 VDYDQLKAPEDEDNAGSLLNKLAVLKLNGGLGTSMGCKGPKSMIEVR--NGNTFLDLIVQ 91
Query: 149 KIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCF 208
+I++L +++ +P +M S TD T+++ E+ Y G + F+Q P
Sbjct: 92 QIEQL----NKRYNCD-VPLLLMNSFNTDEETKKFLEK--YSGSK-VEIKTFQQSRYPRI 143
Query: 209 SLSGEILLETRDRVARSPD-----GHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV 263
+ + + + +PD GHG L+ +L +G+LDT+ +G ++I V VDN L
Sbjct: 144 YKDSLLPVPK-KKDSMAPDEWYPPGHGDLFRSLYNSGLLDTLLAQGKEYIFVSNVDN-LG 201
Query: 264 KVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQD 323
D L + + +G G++V EK G L + DGK +++EY+++ V E +
Sbjct: 202 ATVDLNILNHIINKGIEYGMEVTEKTNADVKGGTLISYDGKLRLLEYAQVPKEHVDEFKS 261
Query: 324 QTGRLKFNLGSICNHYFSLECLQRMVKEDA-ALKFHMARKKIPCLDEQGISQRPNKPNGI 382
+ FN +I + +L+ ++R+V+ + L + +KKI K NGI
Sbjct: 262 ASKFKIFNTNNI---WINLKAVKRLVESNELNLDIIVNQKKI-----------TYKNNGI 307
Query: 383 KLEKF---LFDAFPLCENLVAWEVTRDEFSPLKNS 414
K+ + A +N V RD F P+K +
Sbjct: 308 KVLQLETAAGAAIRQFKNSFGINVPRDRFLPVKTT 342
Score = 35.1 bits (81), Expect = 0.085
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 9 VDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
VD L + +AV+ L GG GT +G P
Sbjct: 34 VDYDQLKAPEDEDNAGSLLNKLAVLKLNGGLGTSMGCKGP 73
>gnl|CDD|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of
UDP-Glucose/UDP-Galactose. UGGPase:
UDP-Galactose/Glucose Pyrophosphorylase catalyzes the
reversible production of UDP-Glucose/UDP-Galactose and
pyrophosphate (PPi) from
Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its
dual substrate specificity distinguishes it from the
single substrate enzyme UDP-glucose pyrophosphorylase.
It may play a key role in the galactose metabolism in
raffinose oligosaccharide (RFO) metabolizing plants. RFO
raffinose is a major photoassimilate and is a
galactosylderivative of sucrose (Suc) containing a
galactose (Gal) moiety. Upon arriving at the sink
tissue, the Gal moieties of the RFOs are initially
removed by alpha-galactosidase and then are
phosphorylated to Gal-1-P. Gal-1-P is converted to
UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc
via an epimerase reaction. The UDP-Glc can be directly
utilized in cell wall metabolism or in Suc synthesis.
However, for the Suc synthesis UDP-Glc must be further
metabolized to Glc-1-P. This can be carried out either
by the UGPase in the reverse direction or by the dual
substrate PPase itself operating in the reverse
direction. According to the latter possibility, the
three-step pathway of Gal-1-P to Glc-1-P could be
carried out by a single PPase, functioning sequentially
in reverse directions separated by the epimerase
reaction.
Length = 315
Score = 84.8 bits (210), Expect = 3e-18
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 18/217 (8%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLP----SGKSLFQIQAEKIDKLIEIAKEKFGSGC 165
+++AGG G RLG K IGLP + + Q I E +K+
Sbjct: 1 AVFVLVAGGLGERLGYSGIK----IGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKME- 55
Query: 166 LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLS-GEILLETRDR--V 222
+P+ IMTS+ T T + E N YFGL+ V KQ + C + + L+ + +
Sbjct: 56 IPFVIMTSDDTHSKTLKLLEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSI 115
Query: 223 ARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCG 282
P GHG ++ L +G+L G K + + N L P LG +
Sbjct: 116 LTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKAIPAVLGVSATKSLDMN 175
Query: 283 VKVVEKITPGESLGVLC---NVDGKHKI--VEYSELG 314
V + P E++G LC +GK VEY++L
Sbjct: 176 SLTVPRK-PKEAIGALCKLTKNNGKSMTINVEYNQLD 211
>gnl|CDD|215444 PLN02830, PLN02830, UDP-sugar pyrophosphorylase.
Length = 615
Score = 83.2 bits (206), Expect = 6e-17
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 21/197 (10%)
Query: 96 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYN---IGLPS----GKSLFQIQAE 148
+ E GL+ G+ A +++AGG G RLG Y+ + LP+ G Q+ E
Sbjct: 117 ELEEAGLREA--GNAAFVLVAGGLGERLG-------YSGIKVALPTETATGTCYLQLYIE 167
Query: 149 KIDKLIEIAKEKFGSGC--LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMP 206
I L E AK++ +P IMTS+ T T + ERN YFG+DP V KQ +
Sbjct: 168 SILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVA 227
Query: 207 CFS-LSGEILLETRDR--VARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILV 263
C + L+ D + P GHG ++ L ++G+LD + G K + + N LV
Sbjct: 228 CLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLV 287
Query: 264 KVGDPTFLGYCVEQGAH 280
P LG +G
Sbjct: 288 FKAIPAALGVSATKGFD 304
>gnl|CDD|132998 cd00897, UGPase_euk, Eukaryotic UGPase catalyses the synthesis of
UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase)
catalyzes the reversible production of UDP-Glucose and
pyrophosphate (PPi) from Glucose-1-phosphate and UTP.
UDP-glucose plays pivotal roles in galactose
utilization, in glycogen synthesis, and in the synthesis
of the carbohydrate moieties of glycolipids,
glycoproteins, and proteoglycans. UGPase is found in
both prokaryotes and eukaryotes. Interestingly, while
the prokaryotic and eukaryotic forms of UGPase catalyze
the same reaction, they share low sequence similarity.
This family consists of mainly eukaryotic
UTP-glucose-1-phosphate uridylyltransferases.
Length = 300
Score = 54.6 bits (132), Expect = 3e-08
Identities = 79/319 (24%), Positives = 139/319 (43%), Gaps = 51/319 (15%)
Query: 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFI 170
V+ L GG GT +G PK + I + GK+ + ++I+ L + +G +P +
Sbjct: 5 VVLKLNGGLGTSMGCTGPKSL--IEVRDGKTFLDLTVQQIEHL----NKTYGVD-VPLVL 57
Query: 171 MTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPD--- 227
M S TD T++ ++ +D + F Q P I ET V D
Sbjct: 58 MNSFNTDEDTKKILKKYAGVNVD---IHTFNQSRYP------RISKETLLPVPSWADSPD 108
Query: 228 ------GHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHC 281
GHG ++ +L +G+LDT+ +G +++ V +DN L D L + V+ A
Sbjct: 109 EEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN-LGATVDLRILNHMVDNKAEY 167
Query: 282 GVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFS 341
++V +K G L +GK +++E +++ V E + KF + + N + +
Sbjct: 168 IMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIK---KFKIFNTNNLWVN 224
Query: 342 LECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNK------PNGIKLEKFLFDAFPLC 395
L+ ++R+V+E+A LD + I N N I+LE + A
Sbjct: 225 LKAVKRVVEENA-------------LDLEII---VNPKTVDGGLNVIQLETAVGAAIKNF 268
Query: 396 ENLVAWEVTRDEFSPLKNS 414
+N + V R F P+K +
Sbjct: 269 DNALGVNVPRSRFLPVKTT 287
>gnl|CDD|178092 PLN02474, PLN02474, UTP--glucose-1-phosphate uridylyltransferase.
Length = 469
Score = 54.9 bits (132), Expect = 4e-08
Identities = 72/309 (23%), Positives = 138/309 (44%), Gaps = 34/309 (11%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF 169
+ V+ L GG GT +G PK + I + +G + + I IE +K+G +P
Sbjct: 80 LVVLKLNGGLGTTMGCTGPKSV--IEVRNGLTFLDL----IVIQIENLNKKYGCN-VPLL 132
Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARS---P 226
+M S T T++ E+ ++ + F Q P + ++ + + P
Sbjct: 133 LMNSFNTHDDTQKIVEKYTNSNIE---IHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYP 189
Query: 227 DGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVV 286
GHG ++ +L +G LD + ++G +++ + DN L + D L + ++ ++V
Sbjct: 190 PGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKILNHLIQNKNEYCMEVT 248
Query: 287 EKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346
K G L + +GK +++E +++ + V E + KF + + N + +L+ ++
Sbjct: 249 PKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIE---KFKIFNTNNLWVNLKAIK 305
Query: 347 RMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIK---LEKFLFDAFPLCENLVAWEV 403
R+V+ D ALK + IP P + +G+K LE A +N + V
Sbjct: 306 RLVEAD-ALKMEI----IP---------NPKEVDGVKVLQLETAAGAAIRFFDNAIGINV 351
Query: 404 TRDEFSPLK 412
R F P+K
Sbjct: 352 PRSRFLPVK 360
>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production.
4-diphosphocytidyl-2-methyl-D-erythritol synthase
(CDP-ME), also called 2C-methyl-d-erythritol
4-phosphate cytidylyltransferase catalyzes the third
step in the alternative (non-mevalonate) pathway of
Isopentenyl diphosphate (IPP) biosynthesis: the
formation of 4-diphosphocytidyl-2C-methyl-D-erythritol
from CTP and 2C-methyl-D-erythritol 4-phosphate. This
mevalonate independent pathway that utilizes pyruvate
and glyceraldehydes 3-phosphate as starting materials
for production of IPP occurs in a variety of bacteria,
archaea and plant cells, but is absent in mammals. Thus,
CDP-ME synthetase is an attractive targets for the
structure-based design of selective antibacterial,
herbicidal and antimalarial drugs.
Length = 218
Score = 43.3 bits (103), Expect = 9e-05
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ------IQAEKIDKLI 154
VA I+LA G G+R+GAD PK +G GK + + + ID+++
Sbjct: 1 VAAIILAAGSGSRMGADIPKQFLELG---GKPVLEHTLEAFLAHPAIDEIV 48
Score = 37.9 bits (89), Expect = 0.006
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
VA I+LA G G+R+GAD P
Sbjct: 1 VAAIILAAGSGSRMGADIP 19
>gnl|CDD|215387 PLN02728, PLN02728, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase.
Length = 252
Score = 40.1 bits (94), Expect = 0.001
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 107 RGDVAVIVLAGGQGTRLGADYPK 129
V+VI+LAGG G R+GA+ PK
Sbjct: 22 EKSVSVILLAGGVGKRMGANMPK 44
Score = 37.4 bits (87), Expect = 0.009
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 27 RGDVAVIVLAGGQGTRLGADYP 48
V+VI+LAGG G R+GA+ P
Sbjct: 22 EKSVSVILLAGGVGKRMGANMP 43
>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain. This
family includes the MobA protein (Molybdopterin-guanine
dinucleotide biosynthesis protein A). The family also
includes a wide range of other NTP transferase domain.
Length = 178
Score = 38.3 bits (90), Expect = 0.003
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKI 150
++LAGG+ +R+G D K + +G GK L + +++
Sbjct: 1 GVILAGGRSSRMGGD--KALLPLG---GKPLLERVLDRL 34
Score = 31.4 bits (72), Expect = 0.70
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 32 VIVLAGGQGTRLGAD 46
++LAGG+ +R+G D
Sbjct: 1 GVILAGGRSSRMGGD 15
>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin
guanine dinucleotide. The prokaryotic enzyme
molybdopterin-guanine dinucleotide biosynthesis protein
A (MobA). All mononuclear molybdoenzymes bind molybdenum
in complex with an organic cofactor termed molybdopterin
(MPT). In many bacteria, including Escherichia coli,
molybdopterin can be further modified by attachment of a
GMP group to the terminal phosphate of molybdopterin to
form molybdopterin guanine dinucleotide (MGD). This GMP
attachment step is catalyzed by MobA, by linking a
guanosine 5'-phosphate to MPT forming molybdopterin
guanine dinucleotide. This reaction requires GTP, MgCl2,
and the MPT form of the cofactor. It is a reaction
unique to prokaryotes, and therefore may represent a
potential drug target.
Length = 181
Score = 37.9 bits (89), Expect = 0.004
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
+ ++LAGG+ R+G D K + +G GK L + E++ L++
Sbjct: 1 ITGVILAGGKSRRMGGD--KALLELG---GKPLLEHVLERLKPLVD 41
Score = 31.4 bits (72), Expect = 0.56
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 30 VAVIVLAGGQGTRLGAD 46
+ ++LAGG+ R+G D
Sbjct: 1 ITGVILAGGKSRRMGGD 17
>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 482
Score = 38.8 bits (91), Expect = 0.005
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 106 SRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
+ AVIVLA G GTR+ +D PK ++ + G+S+
Sbjct: 1 APRPTAVIVLAAGAGTRMRSDTPKVLHTLA---GRSM 34
Score = 33.0 bits (76), Expect = 0.32
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 26 SRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGH 62
+ AVIVLA G GTR+ +D P + ++ + +GH
Sbjct: 1 APRPTAVIVLAAGAGTRMRSDTPKVLHTLAGRSMLGH 37
>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase; Reviewed.
Length = 227
Score = 37.0 bits (87), Expect = 0.012
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 110 VAVIVLAGGQGTRLGADYPK 129
V I+ A G+G+R+GAD PK
Sbjct: 4 VYAIIPAAGKGSRMGADRPK 23
Score = 33.6 bits (78), Expect = 0.14
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
V I+ A G+G+R+GAD P
Sbjct: 4 VYAIIPAAGKGSRMGADRP 22
>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis
protein A [Coenzyme metabolism].
Length = 192
Score = 35.7 bits (83), Expect = 0.028
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEK 149
+ ++LAGG+ R+ K + + G+ L + ++
Sbjct: 4 PMTGVILAGGKSRRMR---DKALLPLN---GRPLIEHVIDR 38
>gnl|CDD|234725 PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis
protein MobA; Reviewed.
Length = 193
Score = 35.5 bits (83), Expect = 0.032
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 113 IVLAGGQGTRL-GADYPKGMYNIGLPSGKSLFQ 144
++LAGG+ R+ G D KG+ + GK L Q
Sbjct: 7 VILAGGRSRRMGGVD--KGLQELN---GKPLIQ 34
>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase
[Lipid metabolism].
Length = 230
Score = 35.7 bits (83), Expect = 0.034
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 106 SRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLF 143
R V+ ++LA G G+R+G PK +G G+ L
Sbjct: 1 MRMMVSAVILAAGFGSRMGNPVPKQYLELG---GRPLL 35
Score = 31.4 bits (72), Expect = 0.69
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 26 SRGDVAVIVLAGGQGTRLGADYP 48
R V+ ++LA G G+R+G P
Sbjct: 1 MRMMVSAVILAAGFGSRMGNPVP 23
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
cytidylyltransferases catalyze the synthesis of
CDP-choline. This family contains proteins similar to
prokaryotic phosphocholine (P-cho)
cytidylyltransferases. Phosphocholine (PC)
cytidylyltransferases catalyze the transfer of a
cytidine monophosphate from CTP to phosphocholine to
form CDP-choline. PC is the most abundant phospholipid
in eukaryotic membranes and it is also important in
prokaryotic membranes. For pathogenic prokaryotes, the
cell surface PC facilitates the interaction with host
surface and induces attachment and invasion. In addition
cell wall PC serves as scaffold for a group of
choline-binding proteins that are secreted from the
cells. Phosphocholine (PC) cytidylyltransferase is a key
enzyme in the prokaryotic choline metabolism pathway. It
has been hypothesized to consist of a choline transport
system, a choline kinase, CTP:phosphocholine
cytidylyltransferase, and a choline phosphotransferase
that transfers P-Cho from CDP-Cho to either lipoteichoic
acid or lipopolysaccharide.
Length = 229
Score = 35.3 bits (82), Expect = 0.041
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Query: 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKE 159
I+LA G+G+RL D PK + I GK L +++ IE KE
Sbjct: 1 AIILAAGRGSRLRPLTEDRPKCLLEIN---GKPL-------LERQIETLKE 41
>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 34.2 bits (79), Expect = 0.11
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
+ ++LA G G+RLG D PK + +G G+ +
Sbjct: 4 MKAVILAAGFGSRLGPDIPKALVEVG---GREI 33
Score = 28.8 bits (65), Expect = 5.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 30 VAVIVLAGGQGTRLGADYPN 49
+ ++LA G G+RLG D P
Sbjct: 4 MKAVILAAGFGSRLGPDIPK 23
>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 450
Score = 34.5 bits (80), Expect = 0.13
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ 144
+AV +LA G+GTR+ + PK ++ +G GKSL +
Sbjct: 2 LAVAILAAGKGTRMKSSLPKVLHPLG---GKSLVE 33
>gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell
envelope biogenesis, outer membrane].
Length = 333
Score = 34.1 bits (79), Expect = 0.14
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 113 IVLAGGQGTRL----GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAK 158
++LAGG G+RL DYPK + L SL Q +++ L +I +
Sbjct: 5 VILAGGSGSRLWPLSRKDYPKQF--LKLFGDLSLLQQTVKRLAFLGDIEE 52
>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase. Members of this protein family
are 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase, the IspD protein of the
deoxyxylulose pathway of IPP biosynthesis. In about
twenty percent of bacterial genomes, this protein occurs
as IspDF, a bifunctional fusion protein [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other].
Length = 217
Score = 33.0 bits (76), Expect = 0.20
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLF 143
+ ++ A G+GTR G+ PK +G G+ L
Sbjct: 1 SAVIPAAGRGTRFGSGVPKQYLELG---GRPLL 30
Score = 28.0 bits (63), Expect = 8.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 31 AVIVLAGGQGTRLGADYP 48
+ ++ A G+GTR G+ P
Sbjct: 1 SAVIPAAGRGTRFGSGVP 18
>gnl|CDD|216314 pfam01128, IspD, Uncharacterized protein family UPF0007.
Length = 221
Score = 33.2 bits (76), Expect = 0.22
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIG 135
V ++ A G G R+GA PK +
Sbjct: 1 VVAVIPAAGSGKRMGAGVPKQFLQLL 26
Score = 29.3 bits (66), Expect = 3.3
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 30 VAVIVLAGGQGTRLGADYPNRIESIKIQVYIGH 62
V ++ A G G R+GA P + + Q + H
Sbjct: 1 VVAVIPAAGSGKRMGAGVPKQFLQLLGQPLLEH 33
>gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase
catalyzes the formation of GDP-Mannose.
GDP-mannose-1-phosphate guanylyltransferase, also called
GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the
formation of GDP-Mannose from mannose-1-phosphate and
GTP. Mannose is a key monosaccharide for glycosylation
of proteins and lipids. GDP-Mannose is the activated
donor for mannosylation of various biomolecules. This
enzyme is known to be bifunctional, as both
mannose-6-phosphate isomerase and mannose-1-phosphate
guanylyltransferase. This CD covers the N-terminal
GDP-mannose-1-phosphate guanylyltransferase domain,
whereas the isomerase function is located at the
C-terminal half. GDP-MP is a member of the
nucleotidyltransferase family of enzymes.
Length = 274
Score = 33.3 bits (77), Expect = 0.24
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 112 VIVLAGGQGTRL----GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIA 157
++LAGG GTRL YPK + L KSL Q +++ L+
Sbjct: 3 PVILAGGSGTRLWPLSRESYPKQF--LKLFGDKSLLQQTLDRLKGLVPPD 50
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 32.9 bits (76), Expect = 0.25
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 112 VIVLAGGQGTRLGA---DYPKGM 131
++LAGG GTRL + D PK +
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPL 23
Score = 30.6 bits (70), Expect = 1.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 32 VIVLAGGQGTRLGADYPNR 50
++LAGG GTRL + +
Sbjct: 1 AVILAGGLGTRLRSVVKDL 19
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of
nucleotides onto phosphosugars. Nucleotidyltransferases
transfer nucleotides onto phosphosugars. The enzyme
family includes Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase, Mannose-1-phosphate
guanyltransferase, and Glucose-1-phosphate
thymidylyltransferase. The products are activated sugars
that are precursors for synthesis of lipopolysaccharide,
glycolipids and polysaccharides.
Length = 217
Score = 32.6 bits (75), Expect = 0.30
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW 168
++LA G+GTRL PK + I GK + + I++L ++
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIA---GKPILEYI---IERLARAGIDEI------- 47
Query: 169 FIMTSELTDRPTREYFERNGYFGLD 193
++ L ++ EYF FG++
Sbjct: 48 ILVVGYLGEQ-IEEYFGDGSKFGVN 71
Score = 28.7 bits (65), Expect = 5.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 32 VIVLAGGQGTRL 43
++LA G+GTRL
Sbjct: 1 AVILAAGKGTRL 12
>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU. The
N-terminal domain of N-Acetylglucosamine-1-phosphate
uridyltransferase (GlmU). GlmU is an essential bacterial
enzyme with both an acetyltransferase and an
uridyltransferase activity which have been mapped to the
C-terminal and N-terminal domains, respectively. This
family represents the N-terminal uridyltransferase. GlmU
performs the last two steps in the synthesis of
UDP-N-acetylglucosamine (UDP-GlcNAc), which is an
essential precursor in both the peptidoglycan and the
lipopolysaccharide metabolic pathways in Gram-positive
and Gram-negative bacteria, respectively.
Length = 229
Score = 32.1 bits (74), Expect = 0.41
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
++LA G+GTR+ +D PK ++ + GK +
Sbjct: 1 AVILAAGKGTRMKSDLPKVLHPLA---GKPM 28
>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 32.7 bits (75), Expect = 0.43
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 19/91 (20%)
Query: 112 VIVLAGGQGTRLGA---DYPKGMYNIGLPSGKSLFQIQAEKIDKLIE-IAKEKFGSGCLP 167
++LAGG GTRL D PK + I GK L I+ ++E +A
Sbjct: 4 AVILAGGYGTRLRPLTDDRPKPLLPIA---GKPL-------IEYVLEALAAAGVEE---- 49
Query: 168 WFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
++ EYF G+ +V+
Sbjct: 50 -IVLVVGYLGEQIEEYFGDGEGLGVRITYVV 79
>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 220
Score = 32.1 bits (74), Expect = 0.46
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKF 161
V+++AGG+GTRL + PK M +G GK + + ID+ I F
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVG---GKPILETI---IDRFIAQGFRNF 47
>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase
catalyzes the production of CDP-D-Glucose.
Alpha-D-Glucose-1-phosphate Cytidylyltransferase
catalyzes the production of CDP-D-Glucose from
alpha-D-Glucose-1-phosphate and MgCTP as substrate.
CDP-D-Glucose is the precursor for synthesizing four of
the five naturally occurring 3,6-dideoxy sugars-abequose
(3,6-dideoxy-D-Xylo-hexose), ascarylose
(3,6-dideoxy-L-arabino-hexose), paratose
(3,6-dideoxy-D-ribohexose), and tyvelose
(3,6-dideoxy-D-arabino-hexose. Deoxysugars are
ubiquitous in nature where they function in a variety of
biological processes, including cell adhesion, immune
response, determination of ABO blood groups,
fertilization, antibiotic function, and microbial
pathogenicity.
Length = 253
Score = 32.2 bits (74), Expect = 0.52
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIG 135
V++LAGG GTRL PK M IG
Sbjct: 1 VVILAGGLGTRLSEETELKPKPMVEIG 27
>gnl|CDD|236492 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase protein; Provisional.
Length = 378
Score = 32.1 bits (74), Expect = 0.62
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 109 DVAVIVLAGGQGTRLGADYPK 129
D++++++A G+ TR A+ K
Sbjct: 5 DISLVIVAAGRSTRFSAEVKK 25
Score = 29.0 bits (66), Expect = 5.4
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 29 DVAVIVLAGGQGTRLGADYP 48
D++++++A G+ TR A+
Sbjct: 5 DISLVIVAAGRSTRFSAEVK 24
>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 32.0 bits (73), Expect = 0.72
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 108 GDVAVIVLAGGQGTRLGADYPKGMYNI-GLP 137
++A I+LA G+GTR+ +D K M+ + G P
Sbjct: 2 NNLAAIILAAGKGTRMKSDLVKVMHPLAGRP 32
>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes [Cell envelope, Biosynthesis and degradation
of murein sacculus and peptidoglycan, Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides, Central intermediary
metabolism, Amino sugars].
Length = 451
Score = 31.9 bits (73), Expect = 0.90
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 11/49 (22%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL--------FQIQAEKI 150
++V++LA G+GTR+ +D PK ++ + GK + + +KI
Sbjct: 1 LSVVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVIDAARALGPQKI 46
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 31.4 bits (72), Expect = 0.95
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 30 VAVIVLAGGQGTRLGA 45
+A+I LAGGQGTRLG
Sbjct: 5 LAMI-LAGGQGTRLGK 19
Score = 31.4 bits (72), Expect = 0.95
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 110 VAVIVLAGGQGTRLGA 125
+A+I LAGGQGTRLG
Sbjct: 5 LAMI-LAGGQGTRLGK 19
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 31.8 bits (73), Expect = 0.96
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIG 135
I+LA G+GTR+ + PK ++ +
Sbjct: 6 CLAIILAAGEGTRMKSSLPKVLHPVA 31
>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 31.4 bits (72), Expect = 1.1
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
++ ++LA G+GTR+ +D PK ++ + GK +
Sbjct: 2 SLSAVILAAGKGTRMKSDLPKVLHPVA---GKPM 32
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 858
Score = 31.7 bits (72), Expect = 1.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 154 IEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVI 198
IE+AKEK G P+ + +E RE F GY P +
Sbjct: 591 IELAKEK---GSFPFLVGQTEEETAKLREAFINTGYMKKMPEDIR 632
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 31.0 bits (71), Expect = 1.5
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLF-----QIQAEKIDKLIEI 156
I+LA G+GTR+ + PK ++ + GK + ++ IDK++ +
Sbjct: 4 YAIILAAGKGTRMKSKLPKVLHKV---CGKPMVEHVVDSVKKAGIDKIVTV 51
>gnl|CDD|99750 cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of
mainly bacterial proteins, with a few members found in
fungi, plants, and archaea. Escherichia coli YdcF has
been shown to bind S-adenosyl-L-methionine (AdoMet), but
a biochemical function has not been idenitified. The
family also includes Escherichia coli sanA and
Salmonella typhimurium sfiX, which are involved in
vancomycin resistance; sfiX may also be involved in
murein synthesis.
Length = 150
Score = 30.0 bits (68), Expect = 1.6
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 84 SGVNTVDASTLGKYR-ELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
GVN S + R + +L G ++++GGQG G + M + G
Sbjct: 8 GGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELG--- 64
Query: 143 FQIQAEKI 150
+ AE I
Sbjct: 65 --VPAEAI 70
Score = 27.7 bits (62), Expect = 9.5
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 4 SGVNTVDASTLGKYR-ELGLKLISRGDVAVIVLAGGQG 40
GVN S + R + +L G ++++GGQG
Sbjct: 8 GGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQG 45
>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase. This family
includes a wide range of enzymes which transfer
nucleotides onto phosphosugars.
Length = 247
Score = 30.6 bits (70), Expect = 1.7
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 21/87 (24%)
Query: 113 IVLAGGQGTRLGADYP--KGMYNIGLPSG--KSLFQIQAEKIDKLIEIAKEKFGSGCL-P 167
I+LAGG GTRL +P + + +P + Q ++ +G P
Sbjct: 3 IILAGGSGTRL---WPLTRTLAKPLVPVLDKYPMIQYTLSRL----------MNAGIREP 49
Query: 168 WFIMTSELTDRPT-REYFERNGYFGLD 193
I T E R E FGL
Sbjct: 50 IVICTQE--HRFLVAEQLGDGSKFGLQ 74
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 186
Score = 29.5 bits (67), Expect = 2.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 30 VAVIVLAGGQGTRLGAD 46
+A I+LA G+ +R+G +
Sbjct: 1 IAAIILAAGRSSRMGGN 17
Score = 29.5 bits (67), Expect = 2.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 110 VAVIVLAGGQGTRLGAD 126
+A I+LA G+ +R+G +
Sbjct: 1 IAAIILAAGRSSRMGGN 17
>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is
also called ADP-glucose pyrophosphorylase. The plant
form is an alpha2,beta2 heterodimer, allosterically
regulated in plants. Both subunits are homologous and
included in this model. In bacteria, both homomeric
forms of GlgC and more active heterodimers of GlgC and
GlgD have been described. This model describes the GlgC
subunit only. This enzyme appears in variants of
glycogen synthesis pathways that use ADP-glucose,
rather than UDP-glucose as in animals [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 361
Score = 30.3 bits (69), Expect = 2.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 32 VIVLAGGQGTRLG 44
+VLAGG+G+RL
Sbjct: 1 AMVLAGGRGSRLS 13
Score = 30.3 bits (69), Expect = 2.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 112 VIVLAGGQGTRLG 124
+VLAGG+G+RL
Sbjct: 1 AMVLAGGRGSRLS 13
>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 430
Score = 30.0 bits (68), Expect = 3.3
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKS-LFQI--QAEKI 150
+++I+LA G+GTR+ + PK ++ I GK LF I +A I
Sbjct: 2 KLSIIILAAGKGTRMKSSLPKVLHTI---CGKPMLFYILKEAFAI 43
>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase.
Length = 436
Score = 29.8 bits (68), Expect = 3.5
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
Query: 29 DVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCL-SGVN 87
VA I+L GG GTRL +P K V IG Y+ L + +S NC+ SG+N
Sbjct: 3 SVAAIILGGGAGTRL---FPLTKRRAKPAVPIGGNYR-LIDIPMS-------NCINSGIN 51
Query: 88 TV 89
+
Sbjct: 52 KI 53
Score = 28.7 bits (65), Expect = 8.0
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 109 DVAVIVLAGGQGTRLGADYP 128
VA I+L GG GTRL +P
Sbjct: 3 SVAAIILGGGAGTRL---FP 19
>gnl|CDD|241427 cd13273, PH_SWAP-70, Switch-associated protein-70 Pleckstrin
homology (PH) domain. SWAP-70 (also called
Differentially expressed in FDCP 6/DEF-6 or IRF4-binding
protein) functions in cellular signal transduction
pathways (in conjunction with Rac), regulates cell
motility through actin rearrangement, and contributes to
the transformation and invasion activity of mouse embryo
fibroblasts. Metazoan SWAP-70 is found in B lymphocytes,
mast cells, and in a variety of organs. Metazoan SWAP-70
contains an N-terminal EF-hand motif, a centrally
located PH domain, and a C-terminal coiled-coil domain.
The PH domain of Metazoan SWAP-70 contains a
phosphoinositide-binding site and a nuclear localization
signal (NLS), which localize SWAP-70 to the plasma
membrane and nucleus, respectively. The NLS is a
sequence of four Lys residues located at the N-terminus
of the C-terminal a-helix; this is a unique
characteristic of the Metazoan SWAP-70 PH domain. The
SWAP-70 PH domain binds PtdIns(3,4,5)P3 and
PtdIns(4,5)P2 embedded in lipid bilayer vesicles. There
are additional plant SWAP70 proteins, but these are not
included in this hierarchy. Rice SWAP70 (OsSWAP70)
exhibits GEF activity toward the its Rho GTPase, OsRac1,
and regulates chitin-induced production of reactive
oxygen species and defense gene expression in rice.
Arabidopsis SWAP70 (AtSWAP70) plays a role in both PAMP-
and effector-triggered immunity. Plant SWAP70 contains
both DH and PH domains, but their arrangement is the
reverse of that in typical DH-PH-type Rho GEFs, wherein
the DH domain is flanked by a C-terminal PH domain. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from other
PIP-binding domains by their specific high-affinity
binding to PIPs with two vicinal phosphate groups:
PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which
results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 110
Score = 28.0 bits (63), Expect = 3.7
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 178 RPT-REYFERNGYFGLDPAHVIFFKQRSM--PCFSLSGEILLETRDRVARSPDGHGGLY 233
PT RE +F L P + ++K + GEI L++ V PD G
Sbjct: 21 LPTWRER-----WFVLKPNSLSYYKSEDLKEKK----GEIALDSNCCVESLPDREGKKC 70
>gnl|CDD|233966 TIGR02665, molyb_mobA, molybdopterin-guanine dinucleotide
biosynthesis protein A, proteobacterial. In many
molybdopterin-containing enzymes, including nitrate
reductase and dimethylsulfoxide reductase, the cofactor
is molybdopterin-guanine dinucleotide. The family
described here contains MobA, molybdopterin-guanine
dinucleotide biosynthesis protein A, from the
Proteobacteria only. MobA can reconstitute
molybdopterin-guanine dinucleotide biosynthesis without
the product of the neighboring gene MobB. The probable
MobA proteins of other lineages differ sufficiently that
they are not included in scope of this family
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 186
Score = 29.2 bits (66), Expect = 3.7
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 113 IVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ 144
++LAGG+ R+G KG+ +G GK L +
Sbjct: 4 VILAGGRARRMGGR-DKGLVELG---GKPLIE 31
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of
the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of gamma subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
gamma shares sequence similarity with epsilon subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 214
Score = 29.2 bits (66), Expect = 4.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIG 135
++LAGG G+RL + PK + +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVA 29
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 29.2 bits (66), Expect = 5.5
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ 144
+V++LA G+GTR+ +D PK ++ + +GK + Q
Sbjct: 7 SVVILAAGKGTRMYSDLPKVLHTL---AGKPMVQ 37
>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. The MJ_1101 protein from
Methanococcus jannaschii has been characterized as the
GlmU enzyme catalyzing the final two steps of UDP-GlcNAc
biosynthesis. Many of the genes identified by this model
are in proximity to the GlmS and GlmM genes and are also
presumed to be GlmU. However, some archaeal genomes
contain multiple closely-related homologs from this
family and it is not clear what the substrate
specificity is for each of them.
Length = 393
Score = 28.7 bits (65), Expect = 6.7
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 113 IVLAGGQGTRLG---ADYPKGMYNIGLP-SGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW 168
++LA G+GTR+ PK M LP +GK L + I+ L + +
Sbjct: 4 VILAAGKGTRMRPLTETRPKPM----LPVAGKPLLEHI---IEALRDAGIDD-------- 48
Query: 169 FIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQR 203
F+ REYF G+ +V+ +Q
Sbjct: 49 FVFVVGYGKEKVREYFGDGSRGGVPIEYVVQEEQL 83
>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 29.0 bits (65), Expect = 6.9
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKE 159
+VLA G+GTR+ + PK ++ I SGK + I+ +I+ AK+
Sbjct: 3 ALVLAAGKGTRMKSKIPKVLHKI---SGKPM-------INWVIDTAKK 40
>gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate
guanylyltransferase [Coenzyme metabolism].
Length = 177
Score = 28.0 bits (63), Expect = 7.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 30 VAVIVLAGGQGTRLGA 45
+ I++AGG+GTR+G
Sbjct: 1 MMAIIMAGGRGTRMGR 16
Score = 28.0 bits (63), Expect = 7.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 110 VAVIVLAGGQGTRLGA 125
+ I++AGG+GTR+G
Sbjct: 1 MMAIIMAGGRGTRMGR 16
>gnl|CDD|235063 PRK02726, PRK02726, molybdopterin-guanine dinucleotide
biosynthesis protein A; Provisional.
Length = 200
Score = 28.1 bits (63), Expect = 7.7
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 30 VAVIVLAGGQGTRLGAD 46
+ ++LAGG+ +R+G D
Sbjct: 8 LVALILAGGKSSRMGQD 24
Score = 28.1 bits (63), Expect = 7.7
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 110 VAVIVLAGGQGTRLGAD 126
+ ++LAGG+ +R+G D
Sbjct: 8 LVALILAGGKSSRMGQD 24
>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase.
Members of this family are the enzyme
glucose-1-phosphate cytidylyltransferase, also called
CDP-glucose pyrophosphorylase, the product of the rfbF
gene [Cell envelope, Biosynthesis and degradation of
surface polysaccharides and lipopolysaccharides].
Length = 254
Score = 28.2 bits (63), Expect = 8.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 112 VIVLAGGQGTRLGADY---PKGMYNIG 135
++LAGG GTR+ + PK M IG
Sbjct: 2 AVILAGGLGTRISEETHLRPKPMVEIG 28
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 28.9 bits (65), Expect = 8.1
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 169 FIMTSELTDRP-TREYFERNGYFGLDP 194
+ + D TR FER GYF DP
Sbjct: 510 RVEPAVRDDPADTRYQFERQGYFWADP 536
>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 407
Score = 28.6 bits (65), Expect = 8.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 25 ISRGDVAVIVLAGGQGTRL 43
+ V IVLAGG+G RL
Sbjct: 1 RAMPKVLAIVLAGGEGKRL 19
Score = 28.6 bits (65), Expect = 8.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 105 ISRGDVAVIVLAGGQGTRL 123
+ V IVLAGG+G RL
Sbjct: 1 RAMPKVLAIVLAGGEGKRL 19
>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 393
Score = 28.4 bits (64), Expect = 8.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 29 DVAVIVLAGGQGTRLG 44
+V I+LAGG+G+RL
Sbjct: 5 NVLAIILAGGRGSRLS 20
Score = 28.4 bits (64), Expect = 8.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 109 DVAVIVLAGGQGTRLG 124
+V I+LAGG+G+RL
Sbjct: 5 NVLAIILAGGRGSRLS 20
>gnl|CDD|237728 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MobA;
Provisional.
Length = 369
Score = 28.5 bits (64), Expect = 9.4
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 20/52 (38%)
Query: 15 GKYRELGLKLISRGDVAVI--------------------VLAGGQGTRLGAD 46
Y + GL + R D+A I VLAGG+ +R+G+D
Sbjct: 140 ASYPDFGLPVFHRDDIAAIADFIEGHLLGRAEEVPLSGLVLAGGRSSRMGSD 191
Score = 28.5 bits (64), Expect = 9.4
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 20/52 (38%)
Query: 95 GKYRELGLKLISRGDVAVI--------------------VLAGGQGTRLGAD 126
Y + GL + R D+A I VLAGG+ +R+G+D
Sbjct: 140 ASYPDFGLPVFHRDDIAAIADFIEGHLLGRAEEVPLSGLVLAGGRSSRMGSD 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.421
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,916,937
Number of extensions: 2480507
Number of successful extensions: 2264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2226
Number of HSP's successfully gapped: 112
Length of query: 484
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 383
Effective length of database: 6,457,848
Effective search space: 2473355784
Effective search space used: 2473355784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)