RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10030
(484 letters)
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase,
alternative splicing; HET: UD1; 1.90A {Homo sapiens}
SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Length = 505
Score = 422 bits (1085), Expect = e-144
Identities = 203/454 (44%), Positives = 280/454 (61%), Gaps = 19/454 (4%)
Query: 48 PNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISR 107
+ Q I Q + P + G T D L + GL IS+
Sbjct: 42 FEELNFF-FQKAIEGFNQSSHQKNVDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQ 100
Query: 108 GDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC-L 166
VAV++LAGGQGTRLG YPKGMY++GLPS K+LFQIQAE+I KL ++A++ +G+ C +
Sbjct: 101 NKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCII 160
Query: 167 PWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSP 226
PW+IMTS T T+E+F ++ YFGL +VIFF+Q +P S G+I+LE +++V+ +P
Sbjct: 161 PWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAP 220
Query: 227 DGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVV 286
DG+GGLY AL A I++ M RGI IHVYCVDNILVKV DP F+G+C+++GA CG KVV
Sbjct: 221 DGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVV 280
Query: 287 EKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQ 346
EK P E +GV+C VDG +++VEYSE+ + + GRL FN G+I NH+F++ L+
Sbjct: 281 EKTNPTEPVGVVCRVDGVYQVVEYSEISLA-TAQKRSSDGRLLFNAGNIANHFFTVPFLR 339
Query: 347 RMVKEDAA-LKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTR 405
+V L+ H+A+KKIP +D QG +P+KPNGIK+EKF+FD F + V +EV R
Sbjct: 340 DVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLR 399
Query: 406 -DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETG------------- 451
DEFSPLKN+ + DNP T A+ +LH W+ AGG + +
Sbjct: 400 EDEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDAND 459
Query: 452 -NTVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE 484
CEI+P +SY GEGLE V K PL+++
Sbjct: 460 VPIQCEISPLISYAGEGLESYVADKEFHAPLIID 493
Score = 47.5 bits (112), Expect = 6e-06
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 8 TVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKI 56
T D L + GL IS+ VAV++LAGGQGTRLG YP + + +
Sbjct: 81 TRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGL 129
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.80A {Entamoeba histolytica}
Length = 405
Score = 407 bits (1046), Expect = e-140
Identities = 148/392 (37%), Positives = 232/392 (59%), Gaps = 11/392 (2%)
Query: 96 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
++ GL+LIS+G A+I AGGQG+RLG ++PKGM+ + KS+FQ+ +E++ +L E
Sbjct: 22 EHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQE 81
Query: 156 IAKEKFGSGC--LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGE 213
+A E + WF+MT+E T YF+ + YFGL + F Q +P +G+
Sbjct: 82 LASEYSHQKNVMIHWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGK 141
Query: 214 ILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGY 273
IL E +D+ +P+GHGGL+ AL GIL+ M+ +GIK+ + VDNIL K DP +GY
Sbjct: 142 ILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGY 201
Query: 274 CVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLG 333
+ +K+V+K E +GVL + K+VEY+EL + + + G +N G
Sbjct: 202 MDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTELTDELNKQLSN--GEFIYNCG 259
Query: 334 SICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAFP 393
I + +S L++ + L +H+A+KK+P ++EQGI P++ NGIK E F FD FP
Sbjct: 260 HISINGYSTSFLEKAAEYQ--LPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFP 317
Query: 394 LCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADETGN 452
L + +E+ R EFS LKNS + + DN T + + L+ +++ AG +V D++ +
Sbjct: 318 LATKVSIFEIQRFIEFSALKNSL-NESFDNVNTVKRDWYRLNIYYLKKAGAIV--DDSKS 374
Query: 453 TVCEIAPRVSYEGEGLEERVKGKVLQTPLLLE 484
+CEI+ R S+E EGL+E KGK +Q P +L+
Sbjct: 375 PICEISFRKSFEEEGLKE-FKGKTIQLPFILQ 405
Score = 49.0 bits (116), Expect = 2e-06
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 16 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
++ GL+LIS+G A+I AGGQG+RLG ++P
Sbjct: 22 EHYYRGLELISQGKTALITPAGGQGSRLGFEHP 54
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N-
acetylglucosamine, N-acetylglucosamine-1-phosphate,
transferase; 1.90A {Candida albicans} PDB: 2yqh_A*
2yqj_A* 2yqs_A*
Length = 486
Score = 389 bits (1000), Expect = e-132
Identities = 182/453 (40%), Positives = 263/453 (58%), Gaps = 25/453 (5%)
Query: 46 DYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLI 105
+ P ++ S ++ I + +++ P + + L + ELGLK I
Sbjct: 44 EEPAKLIST-VEQAIQFSQTNSTSRNFTQL---PNEQTASTLDLSKDILQNWTELGLKAI 99
Query: 106 SRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC 165
G+VAV+++AGGQGTRLG+ PKG +NI LPS KSLFQIQAEKI K+ ++A++ S
Sbjct: 100 GNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTK 159
Query: 166 ---LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGE-ILLETRDR 221
+ W+IMTS T T +F N YFGL+ VIFF Q ++PCF+L G ILLE ++
Sbjct: 160 KPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNS 219
Query: 222 VARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHC 281
+ +SPDG+GGLY AL GILD ++++GIKHIH+YCVDN LVKV DP F+G+ + +
Sbjct: 220 ICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDL 279
Query: 282 GVKVVEKITPGESLGVLC--NVDGKHKIVEYSELGNCSVFETQDQ-TGRLKFNLGSICNH 338
KVV K ES+G++ + K ++EYSE+ + Q + +L +I NH
Sbjct: 280 ATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNH 339
Query: 339 YFSLECLQRMVKEDAA----LKFHMARKKIPCLD-EQGISQRPNKPNGIKLEKFLFDAFP 393
Y+S+E L +M+ + + L FH+A+KKIP L+ E G +P +PNGIKLE+F+FD FP
Sbjct: 340 YYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFP 399
Query: 394 LC--ENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADET 450
EV R DEFSPLKN+ + +D P TC ++W+ GGV+
Sbjct: 400 SVELNKFGCLEVDRLDEFSPLKNAD-GAKNDTPTTCRNHYLERSSKWVIQNGGVIDNQG- 457
Query: 451 GNTVCEIAPRVSYEGEGLEERVKGKVLQTPLLL 483
+ E+ + SY GEGLE V GK + ++
Sbjct: 458 ---LVEVDSKTSYGGEGLEF-VNGKHFKNGDII 486
Score = 42.5 bits (99), Expect = 2e-04
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 6 VNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIKI 56
+ L + ELGLK I G+VAV+++AGGQGTRLG+ P +I++
Sbjct: 80 TLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIEL 130
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP,
structural GE structural genomics consortium, SGC; HET:
UPG PG4; 1.92A {Trypanosoma brucei}
Length = 484
Score = 297 bits (762), Expect = 4e-96
Identities = 74/407 (18%), Positives = 136/407 (33%), Gaps = 52/407 (12%)
Query: 90 DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEK 149
L G V+ L GG GT +G + PK + + +G++ A +
Sbjct: 57 SLPFLQGIETKGENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQV--KNGQTFLDFTALQ 114
Query: 150 IDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFS 209
++ ++ +P+ +M S T T+ + + I Q +P
Sbjct: 115 LEHFRQVRNCN-----VPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIR 169
Query: 210 LSGE--ILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGD 267
+ E P GHG +Y L ++G LD + +G +++ + DN L D
Sbjct: 170 QDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLD 228
Query: 268 PTFLGYCVEQGAHCGVKVVEKITPGESLGVLCN----------VDGKHKIVEYSELGNCS 317
L Y E+ ++V + + G L + + E ++
Sbjct: 229 VRLLDYMHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKED 288
Query: 318 VFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLD--EQGISQR 375
Q+ FN +I + L+ + + + ++P + + Q
Sbjct: 289 EDSFQNIAKHCFFNTNNIWINLMELKKM---------MDEQLGVLRLPVMRNPKTVNPQD 339
Query: 376 PNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHA 435
+LE + A L + A V R+ F+P+K C +
Sbjct: 340 SQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVKT------------CSDLLALRSD 387
Query: 436 RWIETAGGVVVADETGNTVCEIAPRVSYEGE------GLEERVKGKV 476
+ T +V E N P + +GE G E+ VKG V
Sbjct: 388 AYQVTEDQRLVLCEERN---GKPPAIDLDGEHYKMIDGFEKLVKGGV 431
Score = 49.0 bits (116), Expect = 3e-06
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 10 DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
L G V+ L GG GT +G + P
Sbjct: 57 SLPFLQGIETKGENTALLRQAVVLKLNGGLGTGMGLNGP 95
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta
barrel, nucleotidyltransferase; 3.57A {Homo sapiens}
PDB: 3r2w_A
Length = 528
Score = 288 bits (739), Expect = 4e-92
Identities = 74/407 (18%), Positives = 144/407 (35%), Gaps = 54/407 (13%)
Query: 83 LSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
+ + + V+ L GG GT +G PK + IG+ + +
Sbjct: 101 PPEDSIQPYEKIKARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSL--IGVRNENTF 158
Query: 143 FQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQ 202
+ ++I+ L + + +P +M S TD T++ ++ + + + F Q
Sbjct: 159 LDLTVQQIEHLNKTY-----NTDVPLVLMNSFNTDEDTKKILQKYNHCRVK---IYTFNQ 210
Query: 203 RSMPCFSLSG------EILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVY 256
P + ++ + A P GHG +Y + +G+LDT G ++I V
Sbjct: 211 SRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVS 270
Query: 257 CVDNILVKVGDPT---FLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSEL 313
+DN+ V + + ++V K G L +GK ++VE +++
Sbjct: 271 NIDNLGATVDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQV 330
Query: 314 GNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDA-ALKFHMARKKIPCLDEQGI 372
V E + + FN N + SL ++R+ +++A ++ + K +
Sbjct: 331 PKAHVDEFKSVSKFKIFN---TNNLWISLAAVKRLQEQNAIDMEIIVNAKTL-------- 379
Query: 373 SQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHA 432
N I+LE + A EN + V R F P+K T +
Sbjct: 380 ---DGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVK------------TTSDLLLV 424
Query: 433 LHARWIETAGGVVVADETGNTVCEIAPRVSYEGE-----GLEERVKG 474
+ + AG + ++ P V R +
Sbjct: 425 MSNLYSLNAGSLTMS---EKREFPTVPLVKLGSSFTKVQDYLRRFES 468
Score = 43.6 bits (102), Expect = 1e-04
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 3 LSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
+ + + V+ L GG GT +G P
Sbjct: 101 PPEDSIQPYEKIKARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGP 146
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed
beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Length = 488
Score = 286 bits (733), Expect = 1e-91
Identities = 74/407 (18%), Positives = 147/407 (36%), Gaps = 39/407 (9%)
Query: 73 SEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMY 132
S + + N + + + + +AV+ L GG GT +G PK +
Sbjct: 56 SSRTTLEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVI 115
Query: 133 NIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGL 192
+ G + + +I+ L +P +M S TD+ T ++ +
Sbjct: 116 EV--REGNTFLDLSVRQIEYLNRQY-----DSDVPLLLMNSFNTDKDTEHLIKK---YSA 165
Query: 193 DPAHVIFFKQRSMPCFSLSGEILLET---RDRVARSPDGHGGLYHALGATGILDTMHTRG 249
+ + F Q P + + T A P GHG L+ +L +G LD + +G
Sbjct: 166 NRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQG 225
Query: 250 IKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVE 309
+ + V DN L D L + +E GA +++ +K G L + DG+ +++E
Sbjct: 226 REILFVSNGDN-LGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLE 284
Query: 310 YSELGNCSVFETQDQTGRLKFNLGSICNHYFSLECLQRMVKEDAA-LKFHMARKKIPCLD 368
+++ + E ++ FN N + +L+ ++R+++ ++ +K I
Sbjct: 285 VAQVPKEHIDEFKNIRKFTNFN---TNNLWINLKAVKRLIESSNLEMEIIPNQKTIT--- 338
Query: 369 EQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQ 428
+ ++ N ++LE A + V R F P+K TC
Sbjct: 339 -----RDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVK------------TCSD 381
Query: 429 AVHALHARWIETAGGVVVADETGNTVCEI-APRVSYEGEGLEERVKG 474
+ + G + + I + G R+
Sbjct: 382 LLLVKSDLFRLEHGSLKLDPSRFGPNPLIKLGSHFKKVSGFNARIPH 428
Score = 48.6 bits (115), Expect = 3e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 16 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
+ + + +AV+ L GG GT +G P
Sbjct: 79 IISQQPENVSNLSKLAVLKLNGGLGTSMGCVGP 111
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250,
UDP, putative UDP-glucose pyrophosphorylase; HET: UPG
U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4
c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Length = 469
Score = 277 bits (708), Expect = 3e-88
Identities = 76/385 (19%), Positives = 143/385 (37%), Gaps = 44/385 (11%)
Query: 96 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
+++ + V+ L GG GT +G PK + + G + + +I+ L
Sbjct: 66 VSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEV--RDGLTFLDLIVIQIENLNN 123
Query: 156 IAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEIL 215
K +P +M S T T + E+ + + F Q P +
Sbjct: 124 KYGCK-----VPLVLMNSFNTHDDTHKIVEKYTNSNV---DIHTFNQSKYPRVVADEFVP 175
Query: 216 LET---RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLG 272
+ D+ P GHG ++ AL +G LDT ++G +++ V DN L + D T L
Sbjct: 176 WPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILK 234
Query: 273 YCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNL 332
+ ++ ++V K G L + +GK +++E +++ + V E + FN
Sbjct: 235 HLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFN- 293
Query: 333 GSICNHYFSLECLQRMVKEDAA-LKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDA 391
N + +L+ ++++V+ DA ++ K++ + ++LE A
Sbjct: 294 --TNNLWVNLKAIKKLVEADALKMEIIPNPKEV------------DGVKVLQLETAAGAA 339
Query: 392 FPLCENLVAWEVTRDEFSPL--KNSPLDSASDNPVTCCQAVHALHARWIETAGGVVVADE 449
+N + V R F P+ + L SD V AR + +
Sbjct: 340 IRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSI----- 394
Query: 450 TGNTVCEIAPRVSYEGEGLEERVKG 474
E+ P R K
Sbjct: 395 ------ELGPEFKKVAT-FLSRFKS 412
Score = 44.4 bits (104), Expect = 6e-05
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 16 KYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
+++ + V+ L GG GT +G P
Sbjct: 66 VSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGP 98
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative;
rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG;
2.30A {Leishmania major} PDB: 2oef_A*
Length = 505
Score = 275 bits (705), Expect = 2e-87
Identities = 67/382 (17%), Positives = 121/382 (31%), Gaps = 43/382 (11%)
Query: 99 ELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAK 158
E ++ V+ L GG GT +G K + + GK+ A ++ L +
Sbjct: 67 ECDNAVLQS--TVVLKLNGGLGTGMGLCDAKTLLEVK--DGKTFLDFTALQVQYLRQHCS 122
Query: 159 EKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVI-FFKQRSMPCFSLSGE--IL 215
E L + +M S T T+ + + + Q +P
Sbjct: 123 EH-----LRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAA 177
Query: 216 LETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCV 275
+P GHG +Y AL +G L + +G +++ V DN L D L Y
Sbjct: 178 WAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDN-LGATIDKRVLAYME 236
Query: 276 EQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYS-----------ELGNCSVFETQDQ 324
++ ++V + + G L K + E C + +
Sbjct: 237 KEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESF 296
Query: 325 TGRLKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKL 384
K++ + N + L L ++E + +D P +L
Sbjct: 297 QDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDS----SNSASPKVYQL 352
Query: 385 EKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAGGV 444
E + A + E+ A V R F+P+K C + ++ T
Sbjct: 353 ETAMGAAIAMFESASAIVVPRSRFAPVKT------------CADLLALRSDAYVVTDDFR 400
Query: 445 VVADETGNTVCEIAPRVSYEGE 466
+V D + P V +
Sbjct: 401 LVLD---DRCHGHPPVVDLDSA 419
Score = 42.1 bits (98), Expect = 4e-04
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 19 ELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
E ++ V+ L GG GT +G
Sbjct: 67 ECDNAVLQS--TVVLKLNGGLGTGMGLCDA 94
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold,
UDP sugar pyrophospho transferase; 2.03A {Leishmania
major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Length = 630
Score = 259 bits (663), Expect = 6e-80
Identities = 74/498 (14%), Positives = 144/498 (28%), Gaps = 78/498 (15%)
Query: 42 RLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSGVNTVDASTLGKYRELG 101
YP + I+ +E V + +++ P + + G
Sbjct: 50 MFSNMYPGGVAQ-YIRNGHELLARESEEVDFAALEMPPLIFEAPSLHRRTAERTALENAG 108
Query: 102 LKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKF 161
++ +++AGG G RLG K + + + ++
Sbjct: 109 TAML--CKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRV-------- 158
Query: 162 GSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLS-GEILLETRD 220
G +P+ IMTS+ T T + L+ ++ KQ + CF+ S + L+
Sbjct: 159 GGKEVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLALDETG 215
Query: 221 RVARSPDGHGGLYHALGATG------------------ILDTMHTRGIKHIHVYCVDNIL 262
++ R P GHG ++ + +++ G + I N
Sbjct: 216 KLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAG 275
Query: 263 VKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGK------HKIVEYSELGNC 316
+ P L E + + P E +G+LC VEY+
Sbjct: 276 ATITIPISLALSAEHSLDMNFTCIPR-VPKEPIGLLCRTKKNSGDPWLVANVEYNVFAEV 334
Query: 317 SVFETQDQTGRLKFNLGSICNHYFSLECL--------QRMVKEDAALKFHMARKKIPCLD 368
S G + S+ L R+ + + + K
Sbjct: 335 SR-ALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYSD--- 390
Query: 369 EQGISQRPNKPNGIKLEKFLFDA-FPLCENLVAWEVTRDE---FSPLKNSPLD------- 417
R + ++E + D E+ T E + P+KNS +
Sbjct: 391 ----ETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERFSYQPVKNSLEEAAGLVAQ 446
Query: 418 -SASDNPVTCCQAVHALHARWIETAGGVVVADETGNTV-------CEIAPRVSYE---GE 466
+ + T A + L R ++ G + + P + +
Sbjct: 447 GNGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCAS 506
Query: 467 GLEERVKGKVLQTPLLLE 484
+V TP +
Sbjct: 507 SGSLDDLARVFPTPEKVH 524
Score = 32.6 bits (73), Expect = 0.31
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 10 DASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPNRIESIK 55
+ G ++ +++AGG G RLG ++
Sbjct: 97 RTAERTALENAGTAML--CKTVFVLVAGGLGERLGYSSIKVSLPVE 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 8e-10
Identities = 83/492 (16%), Positives = 147/492 (29%), Gaps = 155/492 (31%)
Query: 22 LKLISRGDVAVIVLAGGQGT---------RLGADYPNRIESIKIQVYIGHGYQELSGVQL 72
+ + G+ ++ + GGQG L Y + + I+ EL L
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL-IKFSAET-LSELIRTTL 203
Query: 73 SEVQVFPPNC-----LSGVNTV-DASTLGKYRELGLKLISRGDVAV----IVLAGGQGTR 122
+VF L + D Y L+S + + I + +
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKD----Y------LLS---IPISCPLIGV-----IQ 245
Query: 123 LGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTRE 182
L A Y +G G+ ++ +G + + + + E
Sbjct: 246 L-AHYVVTAKLLGFTPGELRSYLKG--------------ATGHSQGLVTAVAIAETDSWE 290
Query: 183 YFERNGYFGLDPAHVIFF----KQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGA 238
F + + V+FF + P SL IL ++ + + G L
Sbjct: 291 SFFVSVRKAI---TVLFFIGVRCYEAYPNTSLPPSILEDSLE------NNEGVPSPMLSI 341
Query: 239 TGI----LDTM------HTRGIKHIHVYCV---DNILVKVGDPTFLGYCVEQGAHCGVKV 285
+ + + H K + + V N++V G P L Y + K
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-SGPPQSL-YGLNLTLR---KA 396
Query: 286 VEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGR-LKFNLG--SICNHYFS- 341
K G +D + +I +SE R LKF+ + + + S
Sbjct: 397 --KAPSG--------LD-QSRI-PFSE--------------RKLKFSNRFLPVASPFHSH 430
Query: 342 -LECLQRMVKEDAA---LKFHMARKKIPCLD-EQGISQRPNKPNGIKLEKFLFDAFPLCE 396
L ++ +D + F+ +IP D G R + + + + D +
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS---ISERIVDC--IIR 485
Query: 397 NLVAWEVTRD-------EFSPLKNSPLDSASDNPVTCCQAVHALHARWIETAG-GVVVA- 447
V WE T +F P S L L R + G V+VA
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGLGV--------------LTHRNKDGTGVRVIVAG 531
Query: 448 -------DETGN 452
D+ G
Sbjct: 532 TLDINPDDDYGF 543
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids,
nonmevalonate, transferase; HET: C GPP; 2.3A
{Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB:
1w57_A*
Length = 371
Score = 44.5 bits (106), Expect = 5e-05
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAK 158
++++I+LA G TR K +G L+ + + K
Sbjct: 3 EMSLIMLAAGNSTRFNTKVKKQFLRLG---NDPLWLYATKNLSSFYPFKK 49
Score = 34.1 bits (79), Expect = 0.089
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 29 DVAVIVLAGGQGTRLGADYP 48
++++I+LA G TR
Sbjct: 3 EMSLIMLAAGNSTRFNTKVK 22
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 5e-05
Identities = 66/501 (13%), Positives = 116/501 (23%), Gaps = 192/501 (38%)
Query: 17 YRELGLKLISRGD--VAVIVLAGGQGTRLGADYPNRIESIKIQ----VYIGHGYQELSGV 70
R L+S+ + V V L +Y + IK + + Y E
Sbjct: 65 LRLFWT-LLSKQEEMVQKFV-----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 71 QLSEVQVFPPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKG 130
++ QVF N K R+ L+L +V + G
Sbjct: 119 LYNDNQVFAK-----YNVSRLQPYLKLRQALLELRPAKNVLI----------------DG 157
Query: 131 MYNIGLPSGKSLFQIQAEKIDKLIEIAKE------KFGSGCLP----------WFIMTSE 174
+ +G SGK+ + ++ + + P + +
Sbjct: 158 V--LG--SGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 175 LTDRPTREYFERNGYFGLDPAHVIFFKQRSMP-C---------------FSLSGEILLET 218
T R + + K + C F+LS +ILL T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 219 RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQG 278
R + + D + HI +
Sbjct: 273 RFK------------------QVTDFLSAATTTHISL----------------------- 291
Query: 279 AHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSEL------GN---CSVF--ETQDQTGR 327
+TP E +L +L N S+ +D
Sbjct: 292 ----DHHSMTLTPDEVKSLLLKYLD----CRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 328 LKFNLGSICNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQGISQRPNKPNGIKLEKF 387
+ + V D K + L+ +P +
Sbjct: 344 WD---------NW------KHVNCD---KLTTIIES--SLNVL-------EPA---EYRK 373
Query: 388 LFDA---FP---------LCENLVAW-----EVTRDEFSPLKNSPLDSASDNPVTC---- 426
+FD FP L + W + L L T
Sbjct: 374 MFDRLSVFPPSAHIPTILLS---LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 427 --------CQAVHALHARWIE 439
+ +ALH ++
Sbjct: 431 IYLELKVKLENEYALHRSIVD 451
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA);
alpha-beta protein, structural genomics, PSI-2, protein
STRU initiative; 2.31A {Archaeoglobus fulgidus}
Length = 208
Score = 43.1 bits (102), Expect = 7e-05
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEI 156
+ V VL GG G R+G + K + GK L + EK +
Sbjct: 1 MKVAVLVGGVGRRIGME--KTEVMLC---GKKLIEWVLEKYSPFQTV 42
Score = 31.9 bits (73), Expect = 0.32
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 30 VAVIVLAGGQGTRLGAD 46
+ V VL GG G R+G +
Sbjct: 1 MKVAVLVGGVGRRIGME 17
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural
genomics consortium, TBSGC, rossman fold; HET: CDM;
2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A
2xwn_A*
Length = 231
Score = 42.9 bits (102), Expect = 1e-04
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 106 SRGDVAVIVLAGGQGTRLGADYPK 129
G+V IV A G G RL PK
Sbjct: 4 EAGEVVAIVPAAGSGERLAVGVPK 27
Score = 39.4 bits (93), Expect = 0.001
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 26 SRGDVAVIVLAGGQGTRLGADYP 48
G+V IV A G G RL P
Sbjct: 4 EAGEVVAIVPAAGSGERLAVGVP 26
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic;
transferase, non-mevalonate-pathway, herbicide,
allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana}
PDB: 2yc5_A* 1w77_A* 2ycm_A*
Length = 228
Score = 42.1 bits (100), Expect = 1e-04
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ------IQAEKIDKLI 154
V+VI+LAGGQG R+ PK + G+ + + ++ +++
Sbjct: 5 VSVILLAGGQGKRMKMSMPKQYIPLL---GQPIALYSFFTFSRMPEVKEIV 52
Score = 37.5 bits (88), Expect = 0.005
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
V+VI+LAGGQG R+ P
Sbjct: 5 VSVILLAGGQGKRMKMSMP 23
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG,
joint center for structural GENO PSI, protein structure
initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP:
c.68.1.13
Length = 234
Score = 41.8 bits (99), Expect = 2e-04
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ------IQAEKIDKLI 154
I+LA G+G R+ + PK I G+ LF+ +++E ID ++
Sbjct: 14 NVAILLAAGKGERMSENVPKQFLEIE---GRMLFEYPLSTFLKSEAIDGVV 61
Score = 35.2 bits (82), Expect = 0.027
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
I+LA G+G R+ + P
Sbjct: 14 NVAILLAAGKGERMSENVP 32
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase;
cytidylyltransferase, deoxyxylulose-5-phosphate pathway
(DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A
{Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A
1vgt_A 1vgu_A 3n9w_A 1h3m_A
Length = 236
Score = 41.4 bits (98), Expect = 3e-04
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 106 SRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ------IQAEKIDKLI 154
+ DV +V A G G R+ + PK +IG +++ + + ++ +++
Sbjct: 4 THLDVCAVVPAAGFGRRMQTECPKQYLSIG---NQTILEHSVHALLAHPRVKRVV 55
Score = 37.1 bits (87), Expect = 0.007
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 26 SRGDVAVIVLAGGQGTRLGADYP 48
+ DV +V A G G R+ + P
Sbjct: 4 THLDVCAVVPAAGFGRRMQTECP 26
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP
pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB:
2xwm_A*
Length = 223
Score = 40.9 bits (97), Expect = 4e-04
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 110 VAVIVLAGGQGTRLGADYPK 129
+V A G G RL A PK
Sbjct: 3 TVAVVPAAGSGERLRAGRPK 22
Score = 37.5 bits (88), Expect = 0.004
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
+V A G G RL A P
Sbjct: 3 TVAVVPAAGSGERLRAGRP 21
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural
genomics, transferase; 2.35A {Neisseria gonorrhoeae}
SCOP: c.68.1.13 PDB: 1vgz_A
Length = 231
Score = 40.6 bits (96), Expect = 5e-04
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 110 VAVIVLAGGQGTRLGADYPK 129
++ A G G R GAD PK
Sbjct: 7 NIALIPAAGIGVRFGADKPK 26
Score = 37.1 bits (87), Expect = 0.006
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
++ A G G R GAD P
Sbjct: 7 NIALIPAAGIGVRFGADKP 25
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A;
putative protein, molybdenum cofactor, structural G
NPPSFA; 1.61A {Aquifex aeolicus}
Length = 201
Score = 39.6 bits (93), Expect = 8e-04
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 113 IVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
VLAGG+ R G D K +Y I GK + + E + +
Sbjct: 18 YVLAGGKSKRFGED--KLLYEIK---GKKVIERVYETAKSVFK 55
Score = 29.5 bits (67), Expect = 1.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 33 IVLAGGQGTRLGAD 46
VLAGG+ R G D
Sbjct: 18 YVLAGGKSKRFGED 31
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A;
molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A
{Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A*
1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Length = 201
Score = 38.8 bits (91), Expect = 0.001
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
+ +VLAGG+ R+G KG+ + GK L+Q A+ + +
Sbjct: 6 TITGVVLAGGKARRMG-GVDKGLLELN---GKPLWQHVADALMTQLS 48
Score = 30.0 bits (68), Expect = 1.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 29 DVAVIVLAGGQGTRLG 44
+ +VLAGG+ R+G
Sbjct: 6 TITGVVLAGGKARRMG 21
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A
{Streptococcus pneumoniae} PDB: 2vsi_A*
Length = 236
Score = 38.3 bits (90), Expect = 0.003
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 110 VAVIVLAGGQGTRLG-ADYPKGMYNIGLPSGKSLFQ------IQAEKIDKLI 154
+ +LAGG GTR+G ++ PK +G + + + I+K++
Sbjct: 3 IYAGILAGGTGTRMGISNLPKQFLELG---DRPILIHTIEKFVLEPSIEKIV 51
Score = 32.6 bits (75), Expect = 0.23
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 30 VAVIVLAGGQGTRLG-ADYP 48
+ +LAGG GTR+G ++ P
Sbjct: 3 IYAGILAGGTGTRMGISNLP 22
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2; structural genomics, PSI-2, protein structure
initiative; 2.30A {Listeria monocytogenes str}
Length = 246
Score = 38.0 bits (89), Expect = 0.005
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 110 VAVIVLAGGQGTRLG-ADYPKGMYNIGLPSGKSLFQ------IQAEKIDKLI 154
+ +LAGG+GTR+G PK + GK + I + DK++
Sbjct: 4 IYAQILAGGKGTRMGNVSMPKQFLPLN---GKPIIVHTVEKFILNTRFDKIL 52
Score = 32.6 bits (75), Expect = 0.21
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 30 VAVIVLAGGQGTRLG-ADYP 48
+ +LAGG+GTR+G P
Sbjct: 4 IYAQILAGGKGTRMGNVSMP 23
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171,
ISPD_THET8, ISPD, structural genomics PSI; 2.20A
{Thermus thermophilus HB8}
Length = 236
Score = 37.6 bits (88), Expect = 0.005
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 106 SRGDVAVIVLAGGQGTRLGADYPK 129
+V+V++ A G G RLG PK
Sbjct: 22 KHMEVSVLIPAAGNGLRLGRG-PK 44
Score = 36.0 bits (84), Expect = 0.016
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 26 SRGDVAVIVLAGGQGTRLGAD 46
+V+V++ A G G RLG
Sbjct: 22 KHMEVSVLIPAAGNGLRLGRG 42
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase
binding motif, pyrophosphorylase; HET: GTP; 2.80A
{Methanocaldococcus jannaschii}
Length = 196
Score = 37.0 bits (86), Expect = 0.006
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 112 VIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIM 171
+++AGG+GTR+G K + + G+ L + L++ FI
Sbjct: 3 ALIMAGGKGTRMG-GVEKPLIKLC---GRCLIDYV---VSPLLKSKVNNI-------FIA 48
Query: 172 TSELTDRPTREYFERNGYFG 191
TS T + T+EY
Sbjct: 49 TSPNTPK-TKEYINSAYKDY 67
Score = 29.7 bits (67), Expect = 1.4
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 32 VIVLAGGQGTRLG 44
+++AGG+GTR+G
Sbjct: 3 ALIMAGGKGTRMG 15
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure,
CTP:phosphocholine cytidylyltransferase; 1.50A
{Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Length = 254
Score = 37.0 bits (86), Expect = 0.008
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 111 AVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
A+I LA G GTRL + PK + + K L + Q I+ L E
Sbjct: 28 AII-LAAGLGTRLRPLTENTPKALVQVN---QKPLIEYQ---IEFLKE 68
Score = 27.8 bits (62), Expect = 8.0
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 31 AVIVLAGGQGTRLG 44
A+I LA G GTRL
Sbjct: 28 AII-LAAGLGTRLR 40
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase;
HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A*
2x60_A* 2x5s_A*
Length = 336
Score = 36.3 bits (85), Expect = 0.015
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 110 VAVIVLAGGQGTRL----GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC 165
A+I LAGG G R + PK + L KSL + E++ + ++
Sbjct: 3 KALI-LAGGSGERFWPLSTPETPKQF--LKLFGNKSLMRWTFERVLEEMDPK-------- 51
Query: 166 LPWFIMTSE 174
++T +
Sbjct: 52 -DVIVVTHK 59
>2cu2_A Putative mannose-1-phosphate guanylyl transferase;
mannose-1-phosphate geranyltransferase, thermus
thermophilus structural genomics; 2.20A {Thermus
thermophilus} SCOP: b.81.4.1 c.68.1.20
Length = 337
Score = 36.3 bits (85), Expect = 0.017
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 110 VAVIVLAGGQGTRL----GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC 165
A++ +AGG+G RL D PK + L GK+L + E++ L+
Sbjct: 4 YALV-MAGGRGERLWPLSREDRPKPF--LPLFEGKTLLEATLERLAPLVPPE-------- 52
Query: 166 LPWFIMTSE 174
+
Sbjct: 53 -RTLLAVRR 60
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI,
protein structure initi nysgrc; 2.30A {Helicobacter
pylori}
Length = 308
Score = 35.6 bits (83), Expect = 0.024
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 110 VAVIVLAGGQGTRL----GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
++ L+GG G RL + YPK + L KSLF++ ++ L++
Sbjct: 6 KNIL-LSGGSGKRLWPLSRSLYPKQF--LKLFDHKSLFELSFKRNASLVD 52
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; 2.80A {Sulfolobus solfataricus}
Length = 197
Score = 35.0 bits (81), Expect = 0.028
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL 153
++ VI+LA G+G R G K + I + L
Sbjct: 2 NIGVIILAAGEGKRFGG--DKLLAKID---NTPIIMRTIRIYGDL 41
Score = 30.8 bits (70), Expect = 0.65
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 29 DVAVIVLAGGQGTRLGAD 46
++ VI+LA G+G R G D
Sbjct: 2 NIGVIILAAGEGKRFGGD 19
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium
tuberculosis H37RV} PDB: 2we9_A 2yes_A
Length = 197
Score = 34.6 bits (80), Expect = 0.034
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 106 SRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL 153
+ + +VLA G+ RLG PK + ++ + +
Sbjct: 2 TATQITGVVLAAGRSNRLGT--PKQLLPYR---DTTVLGATLDVARQA 44
Score = 32.3 bits (74), Expect = 0.23
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 26 SRGDVAVIVLAGGQGTRLGAD 46
+ + +VLA G+ RLG
Sbjct: 2 TATQITGVVLAAGRSNRLGTP 22
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics,
national institute allergy and infectious diseases; HET:
GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A
1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Length = 459
Score = 34.8 bits (81), Expect = 0.065
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 106 SRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
S ++V++LA G+GTR+ +D PK ++ + GK +
Sbjct: 5 SNSSMSVVILAAGKGTRMYSDLPKVLHPLA---GKPM 38
Score = 30.2 bits (69), Expect = 1.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 26 SRGDVAVIVLAGGQGTRLGADYP 48
S ++V++LA G+GTR+ +D P
Sbjct: 5 SNSSMSVVILAAGKGTRMYSDLP 27
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol,
DI-MYO-inositol phosphate; 1.89A {Archaeoglobus
fulgidus} PDB: 2xmh_A*
Length = 232
Score = 34.1 bits (79), Expect = 0.075
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 112 VIVLAGGQGTRLGADYPKGMYNIG 135
++LA G GTRLG PK + +G
Sbjct: 21 AVILAAGLGTRLG-GVPKPLVRVG 43
Score = 29.5 bits (67), Expect = 2.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 32 VIVLAGGQGTRLG 44
++LA G GTRLG
Sbjct: 21 AVILAAGLGTRLG 33
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit;
ADP-glucose synthase, ADP-glucose pyrophosphorylase,
agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP:
b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 34.1 bits (79), Expect = 0.092
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 29 DVAVIVLAGGQGTRLG 44
V I+L GG GTRL
Sbjct: 20 SVLGIILGGGAGTRLY 35
Score = 34.1 bits (79), Expect = 0.092
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 109 DVAVIVLAGGQGTRLG 124
V I+L GG GTRL
Sbjct: 20 SVLGIILGGGAGTRLY 35
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 33.7 bits (78), Expect = 0.12
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 106 SRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
GD AV+VLA G GTR+ +D PK ++ + G+S+
Sbjct: 9 FPGDTAVLVLAAGPGTRMRSDTPKVLHTLA---GRSM 42
Score = 29.8 bits (68), Expect = 2.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 26 SRGDVAVIVLAGGQGTR 42
GD AV+VLA G GTR
Sbjct: 9 FPGDTAVLVLAAGPGTR 25
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A
{Mycobacterium SP}
Length = 199
Score = 33.1 bits (76), Expect = 0.14
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 22/140 (15%)
Query: 26 SRGDVAVIVLAGGQGTRLGADYPNRIESIKIQVYIGHGYQELSGVQLSEVQVFPPNCLSG 85
R V +VLA G RLG P ++ + +G ++ V
Sbjct: 2 LRSRVTGVVLAAGYSRRLGT--PKQLLPLGDTTLLGATLAMARRCPFDQLIV-------- 51
Query: 86 VNTVDASTLGKYRELGLKLISRGDVAVIVL---AGGQGT--RLGADYPKGMYNIGLPSGK 140
TLG + L+ + + ++++ G + + + +
Sbjct: 52 -------TLGGAADEVLEKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLG 104
Query: 141 SLFQIQAEKIDKLIEIAKEK 160
I A + LI +
Sbjct: 105 DQPGITASAVASLIAGGRGA 124
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Length = 456
Score = 33.2 bits (77), Expect = 0.17
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
++ ++LA G+GTR+ +D PK ++ I GK +
Sbjct: 6 LSAVILAAGKGTRMYSDLPKVLHTIA---GKPM 35
Score = 29.0 bits (66), Expect = 4.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
++ ++LA G+GTR+ +D P
Sbjct: 6 LSAVILAAGKGTRMYSDLP 24
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase,
mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella
enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Length = 259
Score = 32.8 bits (75), Expect = 0.18
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIG 135
++LAGG GTRL PK M IG
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIG 31
Score = 29.3 bits (66), Expect = 2.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 32 VIVLAGGQGTRL 43
++LAGG GTRL
Sbjct: 5 AVILAGGLGTRL 16
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe;
acetyltransferase, bifunctional, drug design; HET: ACO
UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4
c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A*
1g95_A*
Length = 468
Score = 32.5 bits (75), Expect = 0.28
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSL 142
I+LA G+GTR+ +D PK ++ + G S+
Sbjct: 13 FAIILAAGKGTRMKSDLPKVLHKVA---GISM 41
Score = 28.2 bits (64), Expect = 6.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 31 AVIVLAGGQGTRLGADYP 48
I+LA G+GTR+ +D P
Sbjct: 13 FAIILAAGKGTRMKSDLP 30
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose
pyrophosphorylase, allostery, kinetics,
structure-function relationships; 2.10A {Agrobacterium
tumefaciens}
Length = 420
Score = 32.2 bits (74), Expect = 0.33
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 29 DVAVIVLAGGQGTRLG 44
D VLAGG+G+RL
Sbjct: 12 DAMAYVLAGGRGSRLK 27
Score = 32.2 bits (74), Expect = 0.33
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 109 DVAVIVLAGGQGTRLG 124
D VLAGG+G+RL
Sbjct: 12 DAMAYVLAGGRGSRLK 27
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas
gingivalis}
Length = 303
Score = 31.6 bits (71), Expect = 0.57
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 113 IVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAE-----KIDKLIEIAKEKF 161
VLA G G+R G+ K + IG P G ++ +L+ + + F
Sbjct: 9 FVLAAGMGSRYGS--LKQLDGIG-PGGDTIMDYSVYDAIRAGFGRLVFVIRHSF 59
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Length = 401
Score = 31.4 bits (72), Expect = 0.70
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 112 VIVLAGGQGTRL---GADYPKGMYNIGLPSGKSL 142
+LA G G RL PK I K L
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPIL---SKPL 33
Score = 29.1 bits (66), Expect = 3.7
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 32 VIVLAGGQGTRL 43
+LA G G RL
Sbjct: 3 AFILAAGSGERL 14
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural
genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Length = 255
Score = 30.8 bits (68), Expect = 0.75
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 112 VIVLAGGQGTRL---GADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKF 161
+++ G +R G PK M G++LF+ F
Sbjct: 2 IVIPMAGMSSRFFKAGYTQPKYMLEAH---GQTLFEHSVNSFAAYFASTPFLF 51
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A
{Bacillus anthracis} PDB: 3hl3_A*
Length = 269
Score = 30.6 bits (70), Expect = 1.0
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 3/16 (18%)
Query: 33 IVLAGGQGTRLGADYP 48
I+LAGG G+RL YP
Sbjct: 28 IILAGGTGSRL---YP 40
Score = 30.6 bits (70), Expect = 1.0
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 3/16 (18%)
Query: 113 IVLAGGQGTRLGADYP 128
I+LAGG G+RL YP
Sbjct: 28 IILAGGTGSRL---YP 40
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide
complex, nucleotide binding fold; HET: TYD; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.68.1.6
Length = 295
Score = 30.5 bits (70), Expect = 1.0
Identities = 12/16 (75%), Positives = 12/16 (75%), Gaps = 3/16 (18%)
Query: 33 IVLAGGQGTRLGADYP 48
IVLAGG GTRL YP
Sbjct: 7 IVLAGGSGTRL---YP 19
Score = 30.5 bits (70), Expect = 1.0
Identities = 12/16 (75%), Positives = 12/16 (75%), Gaps = 3/16 (18%)
Query: 113 IVLAGGQGTRLGADYP 128
IVLAGG GTRL YP
Sbjct: 7 IVLAGGSGTRL---YP 19
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose,
nucleotidyltransferase, pyrophosphorylase, allostery;
HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6
PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A*
1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B*
1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A*
...
Length = 293
Score = 30.5 bits (70), Expect = 1.1
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 3/16 (18%)
Query: 33 IVLAGGQGTRLGADYP 48
I+LAGG GTRL +P
Sbjct: 6 IILAGGSGTRL---HP 18
Score = 30.5 bits (70), Expect = 1.1
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 3/16 (18%)
Query: 113 IVLAGGQGTRLGADYP 128
I+LAGG GTRL +P
Sbjct: 6 IILAGGSGTRL---HP 18
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate
thymidylytransferase, RFFH; HET: TTP; 2.60A
{Escherichia coli} SCOP: c.68.1.6
Length = 296
Score = 30.5 bits (70), Expect = 1.2
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 3/16 (18%)
Query: 33 IVLAGGQGTRLGADYP 48
I+LAGG GTRL +P
Sbjct: 7 IILAGGSGTRL---HP 19
Score = 30.5 bits (70), Expect = 1.2
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 3/16 (18%)
Query: 113 IVLAGGQGTRLGADYP 128
I+LAGG GTRL +P
Sbjct: 7 IILAGGSGTRL---HP 19
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 30.8 bits (69), Expect = 1.2
Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 23/221 (10%)
Query: 71 QLSEVQVFPPNCLSGVNTVDASTLGKYRELGL-KLISRGDVAVIVLAGGQGTRLGADYP- 128
L ++ V + + R L ++ + D + A G +
Sbjct: 54 SLVSTSLWNTGQPFRVESELG---ERPRTLVRGTVLGQEDPYAYLEA--TDQETGESFEV 108
Query: 129 KGMYNIGLPSGKSLFQIQAE-KIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERN 187
Y P ++ Q++ E +L+ K + + FI +L P ++ R
Sbjct: 109 HVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRV 168
Query: 188 GYFGLDPAHVIFFKQRSMPCFSLSGEILLET---RDRVARSPDGHGGLYHALGATGILDT 244
D + F P + + E +S H L L +L +
Sbjct: 169 RLDERDMWVLSRF--FLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLAS 226
Query: 245 MHTRGIKHIHVYCVDNIL------VKVGDPTFLGYCVEQGA 279
+H G+ H ++ +I+ V + F + V GA
Sbjct: 227 LHHYGLVHTYLRP-VDIVLDQRGGVFLTG--F-EHLVRDGA 263
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase;
1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Length = 315
Score = 29.5 bits (65), Expect = 2.8
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 281 CGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLGSICNHYF 340
CG + + ES V+ + ++ + + Q G HY
Sbjct: 227 CGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCG-----------HYT 275
Query: 341 SLECLQRMVKEDAALKFHMARKKIPCLD 368
+ + + + D A M+ K P D
Sbjct: 276 HITAKETLYRIDGAHLTKMSEYKGPVTD 303
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 6.8
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 19/72 (26%)
Query: 403 VTRDEFSPLKNSPLDSASDNPVTC--CQAVHALHARWIETAGGVVVADETGNTVCEIAPR 460
+TR+ + + +TC C+ +V G+ VC +
Sbjct: 2 MTRES-IDKRAGRRGPNLNIVLTCPECK----------VYPPKIVERFSEGDVVCALC-- 48
Query: 461 VSYEGEGLEERV 472
G L +++
Sbjct: 49 ----GLVLSDKL 56
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Bacillus cereus}
Length = 207
Score = 27.4 bits (61), Expect = 9.9
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 403 VTRDEFSPLKNSPLDSASDNPV--TCCQAVHALHARWIETAGGVVVADETGNTVCEIA 458
TR ++ + + A +V+A TGN++ + A
Sbjct: 48 NTRFGEGAEWIKKIEEITGFKAINSIVGAEPLGPKIP---LDCMVIAPLTGNSMSKFA 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.421
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,639,553
Number of extensions: 492428
Number of successful extensions: 1326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1257
Number of HSP's successfully gapped: 97
Length of query: 484
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 387
Effective length of database: 3,993,456
Effective search space: 1545467472
Effective search space used: 1545467472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)