RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10030
(484 letters)
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
{Human (Homo sapiens), AGX1 [TaxId: 9606]}
Length = 501
Score = 454 bits (1168), Expect = e-157
Identities = 200/423 (47%), Positives = 276/423 (65%), Gaps = 18/423 (4%)
Query: 79 PPNCLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPS 138
P + G T D L + GL IS+ VAV++LAGGQGTRLG YPKGMY++GLPS
Sbjct: 72 VPREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPS 131
Query: 139 GKSLFQIQAEKIDKLIEIAKEKFGSGC-LPWFIMTSELTDRPTREYFERNGYFGLDPAHV 197
K+LFQIQAE+I KL ++A++ +G+ C +PW+IMTS T T+E+F ++ YFGL +V
Sbjct: 132 RKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENV 191
Query: 198 IFFKQRSMPCFSLSGEILLETRDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYC 257
IFF+Q +P S G+I+LE +++V+ +PDG+GGLY AL A I++ M RGI IHVYC
Sbjct: 192 IFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYC 251
Query: 258 VDNILVKVGDPTFLGYCVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCS 317
VDNILVKV DP F+G+C+++GA CG KVVEK P E +GV+C VDG +++VEYSE+ +
Sbjct: 252 VDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLAT 311
Query: 318 VFETQDQTGRLKFNLGSICNHYFSLECLQRMVKE-DAALKFHMARKKIPCLDEQGISQRP 376
+ GRL FN G+I NH+F++ L+ +V + L+ H+A+KKIP +D QG +P
Sbjct: 312 AQKRSS-DGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKP 370
Query: 377 NKPNGIKLEKFLFDAFPLCENLVAWEVTR-DEFSPLKNSPLDSASDNPVTCCQAVHALHA 435
+KPNGIK+EKF+FD F + V +EV R DEFSPLKN+ + DNP T A+ +LH
Sbjct: 371 DKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHH 430
Query: 436 RWIETAGGVVVADETG--------------NTVCEIAPRVSYEGEGLEERVKGKVLQTPL 481
W+ AGG + + CEI+P +SY GEGLE V K PL
Sbjct: 431 CWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPL 490
Query: 482 LLE 484
+++
Sbjct: 491 IID 493
Score = 51.1 bits (122), Expect = 2e-07
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 2 CLSGVNTVDASTLGKYRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
+ G T D L + GL IS+ VAV++LAGGQGTRLG YP
Sbjct: 75 EVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYP 121
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP
2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 378
Score = 296 bits (758), Expect = 3e-97
Identities = 67/322 (20%), Positives = 129/322 (40%), Gaps = 30/322 (9%)
Query: 97 YRELGLKLISRGDVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEI 156
+++ + V+ L GG GT +G PK + + G + + +I+ L
Sbjct: 62 SQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVR--DGLTFLDLIVIQIENLNNK 119
Query: 157 AKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILL 216
+P +M S T T + E+ + + F Q P +
Sbjct: 120 Y-----GCKVPLVLMNSFNTHDDTHKIVEKYTNSNV---DIHTFNQSKYPRVVADEFVPW 171
Query: 217 ET---RDRVARSPDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGY 273
+ D+ P GHG ++ AL +G LDT ++G +++ V DN+ V D T L +
Sbjct: 172 PSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIV-DLTILKH 230
Query: 274 CVEQGAHCGVKVVEKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQDQTGRLKFNLG 333
++ ++V K G L + +GK +++E +++ + V E + FN
Sbjct: 231 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFN-- 288
Query: 334 SICNHYFSLECLQRMVKEDAA-LKFHMARKKIPCLDEQGISQRPNKPNGIKLEKFLFDAF 392
N + +L+ ++++V+ DA ++ K+ + ++LE A
Sbjct: 289 -TNNLWVNLKAIKKLVEADALKMEIIPNPKE------------VDGVKVLQLETAAGAAI 335
Query: 393 PLCENLVAWEVTRDEFSPLKNS 414
+N + V R F P+K S
Sbjct: 336 RFFDNAIGVNVPRSRFLPVKAS 357
Score = 44.9 bits (106), Expect = 1e-05
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 17 YRELGLKLISRGDVAVIVLAGGQGTRLGADYP 48
+++ + V+ L GG GT +G P
Sbjct: 62 SQDVAETKNLLDKLVVLKLNGGLGTTMGCTGP 93
>d1w77a1 c.68.1.13 (A:75-300)
4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)
synthase (IspD, YgbP) {Thale cress (Arabidopsis
thaliana), chloroplast [TaxId: 3702]}
Length = 226
Score = 50.8 bits (120), Expect = 7e-08
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF 169
V+VI+LAGGQG R+ PK + G+ + ++ E+ +
Sbjct: 5 VSVILLAGGQGKRMKMSMPKQYIPLL---GQPIALYSFFTFSRMPEVKEIVVVCDPFFRD 61
Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCF 208
I F G D + +
Sbjct: 62 IFEEYEESIDVDLRFAIPGKERQDSVYSGLQEIDVNSEL 100
Score = 37.0 bits (84), Expect = 0.002
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
V+VI+LAGGQG R+ P
Sbjct: 5 VSVILLAGGQGKRMKMSMP 23
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me
synthase domain {Campylobacter jejuni [TaxId: 197]}
Length = 205
Score = 50.3 bits (119), Expect = 8e-08
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 6/104 (5%)
Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCL-- 166
++++I+LA G TR K +G L+ + + K S +
Sbjct: 1 EMSLIMLAAGNSTRFNTKVKKQFLRLG---NDPLWLYATKNLSSFYPFKKIVVTSSNITY 57
Query: 167 -PWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFS 209
F E + L + + + S
Sbjct: 58 MKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLVS 101
Score = 37.6 bits (86), Expect = 0.001
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 29 DVAVIVLAGGQGTRLGADYP 48
++++I+LA G TR
Sbjct: 1 EMSLIMLAAGNSTRFNTKVK 20
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId:
562]}
Length = 225
Score = 47.0 bits (110), Expect = 1e-06
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 3/100 (3%)
Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW 168
DV +V A G G R+ + PK +IG +++ + + + +
Sbjct: 3 DVCAVVPAAGFGRRMQTECPKQYLSIG---NQTILEHSVHALLAHPRVKRVVIAISPGDS 59
Query: 169 FIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCF 208
L + P + + +
Sbjct: 60 RFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVL 99
Score = 36.6 bits (83), Expect = 0.004
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 29 DVAVIVLAGGQGTRLGADYP 48
DV +V A G G R+ + P
Sbjct: 3 DVCAVVPAAGFGRRMQTECP 22
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Thermotoga maritima
[TaxId: 2336]}
Length = 221
Score = 45.8 bits (107), Expect = 3e-06
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWF 169
VA++ LA G+G R+ + PK I G+ LF+ K I + +
Sbjct: 5 VAIL-LAAGKGERMSENVPKQFLEIE---GRMLFEYPLSTFLKSEAIDGVVIVTRREWFE 60
Query: 170 IMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSL 210
++ + E + F ++ P + L
Sbjct: 61 VVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEKFSPSYVL 101
Score = 32.7 bits (73), Expect = 0.068
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
VA++ LA G+G R+ + P
Sbjct: 5 VAIL-LAAGKGERMSENVP 22
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 248
Score = 45.9 bits (107), Expect = 4e-06
Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 4/171 (2%)
Query: 111 AVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPWFI 170
+V++LA G+GTR+ +D PK ++ + GK++ Q + ++L A G +
Sbjct: 4 SVVILAAGKGTRMYSDLPKVLHTLA---GKAMVQHVIDAANEL-GAAHVHLVYGHGGDLL 59
Query: 171 MTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARSPDGHG 230
+ D G F L G++ L + + + R D
Sbjct: 60 KQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKP 119
Query: 231 GLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHC 281
L + D I + + K
Sbjct: 120 QGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGIL 170
Score = 34.3 bits (77), Expect = 0.023
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 31 AVIVLAGGQGTRLGADYP 48
+V++LA G+GTR+ +D P
Sbjct: 4 SVVILAAGKGTRMYSDLP 21
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl
transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
{Thermus thermophilus [TaxId: 274]}
Length = 268
Score = 43.5 bits (101), Expect = 3e-05
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 113 IVLAGGQGTRLG----ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW 168
+V+AGG+G RL D PK + L GK+L + E++ L+ +
Sbjct: 6 LVMAGGRGERLWPLSREDRPKPF--LPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQE 63
Query: 169 FIM 171
+
Sbjct: 64 AVA 66
Score = 28.5 bits (62), Expect = 1.6
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 33 IVLAGGQGTRL 43
+V+AGG+G RL
Sbjct: 6 LVMAGGRGERL 16
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 226
Score = 43.1 bits (100), Expect = 3e-05
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 13/109 (11%)
Query: 110 VAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEI---------AKEK 160
+A+I A G G R GAD PK IG K++ + ++ +
Sbjct: 5 IALI-PAAGIGVRFGADKPKQYVEIG---SKTVLEHVLGIFERHEAVDLTVVVVSPEDTF 60
Query: 161 FGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFS 209
+ + TR RNG L + + +
Sbjct: 61 ADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDA 109
Score = 31.9 bits (71), Expect = 0.11
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 30 VAVIVLAGGQGTRLGADYP 48
+A+I A G G R GAD P
Sbjct: 5 IALI-PAAGIGVRFGADKP 22
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 250
Score = 41.6 bits (96), Expect = 9e-05
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 113 IVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQIQAEKIDKL 153
I+LA G+GTR+ +D PK ++ + G S+ + + +
Sbjct: 5 IILAAGKGTRMKSDLPKVLHKVA---GISMLEHVFRSVGAI 42
Score = 32.0 bits (71), Expect = 0.11
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 33 IVLAGGQGTRLGADYP 48
I+LA G+GTR+ +D P
Sbjct: 5 IILAAGKGTRMKSDLP 20
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
RfbF {Salmonella typhimurium [TaxId: 90371]}
Length = 259
Score = 39.7 bits (91), Expect = 4e-04
Identities = 31/216 (14%), Positives = 56/216 (25%), Gaps = 13/216 (6%)
Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW 168
++LAGG GTRL PK M IG GK + + + F C
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIG---GKPILWHI---MKMYSVHGIKDFIICCGYK 58
Query: 169 FIMTSE-LTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLET-RDRVARSP 226
+ E + + +G+ + R +
Sbjct: 59 GYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEY 118
Query: 227 DGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKVV 286
+ G+ D I + L P G Q V+
Sbjct: 119 VKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQ--AGQVRSF 176
Query: 287 EKITPGESLGVLCNVDGKHKIVEYSELGNCSVFETQ 322
++ G+ + + V + + +E +
Sbjct: 177 QEKPKGDGAMINGGFFVLNPSVIDLIDNDATTWEQE 212
Score = 29.3 bits (64), Expect = 0.85
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 32 VIVLAGGQGTRLG 44
++LAGG GTRL
Sbjct: 5 AVILAGGLGTRLS 17
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase
small subunit, catalytic domain {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 307
Score = 39.6 bits (91), Expect = 5e-04
Identities = 37/276 (13%), Positives = 78/276 (28%), Gaps = 42/276 (15%)
Query: 109 DVAVIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGC 165
V I+L GG GTRL K +G ID + S
Sbjct: 11 SVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRL------IDIPVSNCLN---SNI 58
Query: 166 LPWFIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCFSLSGEILLETRDRVARS 225
+++T + + L A+ F +S
Sbjct: 59 SKIYVLTQ---------FNSASLNRHLSRAYASNMGGYKNEGFVEV--------LAAQQS 101
Query: 226 PDGHGGLYHALGATGILDTMHTRGIKHIHVYCVDNILVKVGDPTFLGYCVEQGAHCGVKV 285
P+ A + ++ + L ++ F+ E A V
Sbjct: 102 PENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 161
Query: 286 VEKITPGESLGVLCNVDGKHKIVEYSE----------LGNCSVFETQDQTGRLKFNLGSI 335
+ + L +D + +I+E++E + ++ D+ + + S+
Sbjct: 162 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASM 221
Query: 336 CNHYFSLECLQRMVKEDAALKFHMARKKIPCLDEQG 371
+ S + + ++++ + IP G
Sbjct: 222 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLG 257
Score = 30.4 bits (67), Expect = 0.47
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 29 DVAVIVLAGGQGTRLG 44
V I+L GG GTRL
Sbjct: 11 SVLGIILGGGAGTRLY 26
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 229
Score = 39.3 bits (90), Expect = 5e-04
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIEIAKEKFGSGCLPW 168
I+LA G GTRL + PK + + K L + Q I+ L E
Sbjct: 6 AIILAAGLGTRLRPLTENTPKALVQVN---QKPLIEYQ---IEFLKEKGINDIIIIVGYL 59
Query: 169 FIMTSELTDRPTREYFERNGYFGLDPAHVIFFKQRSMPCF 208
L ++ + Y + + ++ + +
Sbjct: 60 KEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANS 99
Score = 28.9 bits (63), Expect = 1.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 32 VIVLAGGQGTRLG 44
I+LA G GTRL
Sbjct: 6 AIILAAGLGTRLR 18
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 295
Score = 36.4 bits (84), Expect = 0.005
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDK 152
IVLAGG GTRL K + I K + +
Sbjct: 6 GIVLAGGSGTRLYPITRAVSKQLLPIY---DKPMIYYPLSVLML 46
Score = 27.6 bits (61), Expect = 2.9
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 32 VIVLAGGQGTRL 43
IVLAGG GTRL
Sbjct: 6 GIVLAGGSGTRL 17
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 35.0 bits (79), Expect = 0.009
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 109 DVAVIVLAGGQGTRLGADYPKGMYNIGLPSGKSLFQ 144
+ +VLAGG+ R+G KG+ + GK L+Q
Sbjct: 3 TITGVVLAGGKARRMGGV-DKGLLELN---GKPLWQ 34
Score = 31.1 bits (69), Expect = 0.21
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 29 DVAVIVLAGGQGTRLG 44
+ +VLAGG+ R+G
Sbjct: 3 TITGVVLAGGKARRMG 18
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179
{Thermus thermophilus [TaxId: 274]}
Length = 231
Score = 32.1 bits (72), Expect = 0.092
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 110 VAVIVLAGGQGTRLG--ADYPKGMYNIGLPSGKSLFQIQAEKI 150
+ IVLAGG+ K + G+ + + E +
Sbjct: 3 PSAIVLAGGKEAWAERFGVGSKALVPYR---GRPMVEWVLEAL 42
Score = 28.3 bits (62), Expect = 1.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 30 VAVIVLAGGQGTRL 43
+ IVLAGG+
Sbjct: 3 PSAIVLAGGKEAWA 16
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
Length = 291
Score = 29.7 bits (67), Expect = 0.67
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 9/47 (19%)
Query: 112 VIVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKIDKLIE 155
I+LAGG GTRL K + I K + + L+
Sbjct: 4 GIILAGGSGTRLHPITRGVSKQLLPIY---DKPMIYYP---LSVLML 44
Score = 27.4 bits (61), Expect = 3.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 32 VIVLAGGQGTRL 43
I+LAGG GTRL
Sbjct: 4 GIILAGGSGTRL 15
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 291
Score = 28.7 bits (63), Expect = 1.4
Identities = 9/69 (13%), Positives = 14/69 (20%)
Query: 140 KSLFQIQAEKIDKLIEIAKEKFGSGCLPWFIMTSELTDRPTREYFERNGYFGLDPAHVIF 199
+L + Q K ++ + G L EY L
Sbjct: 40 MTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAH 99
Query: 200 FKQRSMPCF 208
K
Sbjct: 100 DKAMFDEVD 108
>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 308
Score = 28.7 bits (64), Expect = 1.7
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 137 PSGKSLFQIQAEKIDKLI-EIAKEKFGSG-----CLPWFIMTSELTDRPTREYFERNGYF 190
+ F +E D L E+ +E + +G P+ + +R E + F
Sbjct: 24 FNNARFFSNLSEYDDYLAYEVRREGYEAGYTLKLLTPFLAAAG-VKNRDVERIAELSAKF 82
Query: 191 GLDPAHVIFFKQRSMPCFSLS 211
D + Q +S
Sbjct: 83 VPDAEKAMATLQERWTPVVIS 103
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 292
Score = 28.6 bits (64), Expect = 1.8
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 113 IVLAGGQGTRLG---ADYPKGMYNIGLPSGKSLFQIQAEKI 150
I+LAGG GTRL K + + K + +
Sbjct: 5 IILAGGSGTRLHPATLAISKQLLPVY---DKPMIYYPLSTL 42
Score = 27.4 bits (61), Expect = 3.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 33 IVLAGGQGTRL 43
I+LAGG GTRL
Sbjct: 5 IILAGGSGTRL 15
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 27.3 bits (60), Expect = 2.5
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 136 LPSGKSLFQ-IQAEKIDKLIEIAKEK 160
+ K+L+ I +++ L+E +KE+
Sbjct: 136 VNPFKALYNRIDMRQVEALVEASKEE 161
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 27.3 bits (60), Expect = 3.9
Identities = 13/77 (16%), Positives = 21/77 (27%)
Query: 364 IPCLDEQGISQRPNKPNGIKLEKFLFDAFPLCENLVAWEVTRDEFSPLKNSPLDSASDNP 423
E + L A L L + + + EF LK L S+
Sbjct: 106 FLVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKN 165
Query: 424 VTCCQAVHALHARWIET 440
+ Q V + +
Sbjct: 166 LENLQLVEGVQEQVNAA 182
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
superhelical domain {Lamprey (Ichthyomyzon unicuspis)
[TaxId: 30308]}
Length = 336
Score = 26.4 bits (58), Expect = 7.5
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 348 MVKEDAALKFHMARKKIPCLDEQGISQRPNKP-NGIKLEKFLFDAFPLCENLVAWEVTRD 406
V EDA KF + +D + +K +++ DA P A +
Sbjct: 36 SVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKR 95
Query: 407 EF 408
Sbjct: 96 TL 97
>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS),
C-terminal (anticodon-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 26.2 bits (57), Expect = 8.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 184 FERNGYFGLDPAH 196
FER GYF LD H
Sbjct: 180 FEREGYFCLDSRH 192
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.421
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,843,853
Number of extensions: 90396
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 44
Length of query: 484
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 395
Effective length of database: 1,185,626
Effective search space: 468322270
Effective search space used: 468322270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)