BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10031
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 95/152 (62%), Gaps = 6/152 (3%)
Query: 15 EAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLA-TLPKGGPPIHIAQEK 73
E E Y+S ++ G +GK D + N ++ D T S GPL+ +L PP+ I+ +
Sbjct: 105 EVMEHYVSMYIHGNLGKACIPDTIPN---RVTDHTCP-SGGPLSPSLTTPLPPLDISVAE 160
Query: 74 ADQIGYMPLRDDFEWQYDNNAESVVSGL-IHLEDTDVDTTLKLVHVDMYINKLRERARRK 132
Q+GYMPLRDD+E +YD +AE+++SGL ++ +D DV+ LK HVDMY+ KL+ER RRK
Sbjct: 161 QQQLGYMPLRDDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRK 220
Query: 133 RVVKDFQLIPKFFNAQLNPETKTVKRKFNKDD 164
+ +D+ L+P F + K +KRK K++
Sbjct: 221 NIARDYNLVPAFLGKDKKEKEKALKRKITKEE 252
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 95/152 (62%), Gaps = 6/152 (3%)
Query: 15 EAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLA-TLPKGGPPIHIAQEK 73
E E Y+S ++ G +GK D + N ++ D T S GPL+ +L PP+ I+ +
Sbjct: 105 EVMEHYVSMYIHGNLGKACIPDTIPN---RVTDHTCP-SGGPLSPSLTTPLPPLDISVAE 160
Query: 74 ADQIGYMPLRDDFEWQYDNNAESVVSGL-IHLEDTDVDTTLKLVHVDMYINKLRERARRK 132
Q+GYMPLRDD+E +YD +AE+++SGL ++ +D DV+ LK HVDMY+ KL+ER RRK
Sbjct: 161 QQQLGYMPLRDDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRK 220
Query: 133 RVVKDFQLIPKFFNAQLNPETKTVKRKFNKDD 164
+ +D+ L+P F + K +KRK K++
Sbjct: 221 NIARDYNLVPAFLGKDKKEKEKALKRKITKEE 252
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1
Length = 486
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 83/133 (62%), Gaps = 6/133 (4%)
Query: 15 EAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLA-TLPKGGPPIHIAQEK 73
E + Y+S ++ G +GK D + N ++ D T S GPL+ +L PP+ I +
Sbjct: 105 EVMDHYVSMYIHGNLGKACIPDSIPN---RVTDHTCP-SGGPLSPSLTTPLPPLDITVVE 160
Query: 74 ADQIGYMPLRDDFEWQYDNNAESVVSGL-IHLEDTDVDTTLKLVHVDMYINKLRERARRK 132
Q+GYMPLRDD+E +YD AE ++SGL ++ +D D++ +K HVDMY+ KLRER RRK
Sbjct: 161 QQQLGYMPLRDDYEIEYDQEAEKLISGLSVNYDDEDIEIEMKRAHVDMYVRKLRERQRRK 220
Query: 133 RVVKDFQLIPKFF 145
+ +D+ L+P F
Sbjct: 221 NIARDYNLVPAFL 233
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 14 TEAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLA-TLPKGGPPIHIAQE 72
TE E Y++ ++ G +GK D + N ++ D T GPL+ +L P + +
Sbjct: 104 TEVMEHYVTMYIHGNLGKACIPDSIPN---RVTDHTCPTG-GPLSPSLTTPLPTLDLTVA 159
Query: 73 KADQIGYMPLRDDFEWQYDNNAESVVSGL-IHLEDTDVDTTLKLVHVDMYINKLRERARR 131
Q+GYMPLRDD+E ++D AE+++SGL ++ +D DV+ LK +VDMY+ KL+ER RR
Sbjct: 160 DQQQLGYMPLRDDYEIEFDQEAETLISGLSVNYDDDDVEVELKEAYVDMYVRKLKERQRR 219
Query: 132 KRVVKDFQLIPKFFNAQLNPETKTVKRKFNKDD 164
K + +D+ L+P F + K KRK +K++
Sbjct: 220 KSLARDYNLVPAFLGKDKKEKEKPAKRKISKEE 252
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 15 EAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLATLPKGG-PPIHIAQEK 73
+A+EEY+++F+ GTIG+ TW ++ + ++ID T GPL T PP+ I ++
Sbjct: 108 DAKEEYVNKFVNGTIGRATWTPA-QSQRPRLIDHTGDDDAGPLGTNALSTLPPLEINSDE 166
Query: 74 ADQIGYMPLRDDFEWQYDNNAESVVSGL-IHLEDTDVDTTLKLVHVDMYINKLRERARRK 132
A Q+GYMP RD FE +YD AE ++S + + EDT+VD LKL HVD+Y +LRERARRK
Sbjct: 167 AMQLGYMPNRDSFEREYDPTAEQLISNISLSSEDTEVDVMLKLAHVDIYTRRLRERARRK 226
Query: 133 RVVKDFQLIPKFF 145
R+V+D+QL+ FF
Sbjct: 227 RMVRDYQLVSNFF 239
>sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos taurus GN=TADA2A PE=2 SV=1
Length = 443
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 11 QVGTEAREE----YISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLATLPKGGPP 66
Q+ T+ +EE Y+ F+ + T ++ + + K D + P + P
Sbjct: 101 QMCTKTKEECEKHYMKHFINNPLFASTLLNLKQAEEAKTAD-----TAIPFHSADDPPRP 155
Query: 67 IHIAQEKADQIGYMPLRDDFEWQYDNNAESVVSGLIHLED-TDVDTTLKLVHVDMYINKL 125
+ D GYMP R DF ++DN AE + + +ED +D+ LK+ VD+Y ++L
Sbjct: 156 TFDSLLSRDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRL 215
Query: 126 RERARRKRVVKDFQLI 141
+ER RRK++++D LI
Sbjct: 216 KERQRRKKIIRDHGLI 231
>sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo sapiens GN=TADA2A PE=1 SV=3
Length = 443
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 11 QVGTEAREE----YISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLATLPKGGPP 66
Q+ T+ +EE Y+ F+ + T ++ + + K D + P + P
Sbjct: 101 QMCTKTKEECEKHYMKHFINNPLFASTLLNLKQAEEAKTAD-----TAIPFHSTDDPPRP 155
Query: 67 IHIAQEKADQIGYMPLRDDFEWQYDNNAESVVSGLIHLED-TDVDTTLKLVHVDMYINKL 125
+ D GYMP R DF ++DN AE + + +ED +D+ LK+ VD+Y ++L
Sbjct: 156 TFDSLLSRDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRL 215
Query: 126 RERARRKRVVKDFQLI 141
+ER RRK++++D LI
Sbjct: 216 KERQRRKKIIRDHGLI 231
>sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus norvegicus GN=Tada2a PE=2
SV=1
Length = 443
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 11 QVGTEAREEYISRFLEGTIGKVTWEDVLKN-NQVKIIDMTDQLSEGPLATLPKGGPPIHI 69
Q+ T+ +EE +++ I + L N Q + D + P + P
Sbjct: 101 QMCTKTKEECEKHYMKHFINNPLFASTLLNLKQAEAAKTAD--TAIPFHSADDPPRPAFD 158
Query: 70 AQEKADQIGYMPLRDDFEWQYDNNAESVVSGLIHLED-TDVDTTLKLVHVDMYINKLRER 128
+ D GYMP R DF ++DN AE + + +ED +D+ LK+ VD+Y ++L+ER
Sbjct: 159 SLLSRDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKER 218
Query: 129 ARRKRVVKDFQLI 141
RRK++++D L+
Sbjct: 219 QRRKKIIRDHGLV 231
>sp|Q8CHV6|TAD2A_MOUSE Transcriptional adapter 2-alpha OS=Mus musculus GN=Tada2a PE=1 SV=1
Length = 443
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 75 DQIGYMPLRDDFEWQYDNNAESVVSGLIHLED-TDVDTTLKLVHVDMYINKLRERARRKR 133
D GYMP R DF ++DN AE + + +ED +D+ LK+ VD+Y ++L+ER RRK+
Sbjct: 164 DMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRKK 223
Query: 134 VVKDFQLI 141
+++D L+
Sbjct: 224 IIRDHGLV 231
>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ADA2 PE=1 SV=1
Length = 434
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 15 EAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQ-------LSEGPLATLPK---GG 64
E +E Y+ +LE + D+ +N V + +Q E PL K
Sbjct: 99 EVKEHYLKYYLESKYYPIP--DITQNIHVPQDEFLEQRRHRIESFRERPLEPPRKPMASV 156
Query: 65 PPIHIAQEKADQIGYMPLRDDFEWQYDNNAESVVSGLI-HLEDTDVDTTLKLVHVDMYIN 123
P H Q G+MP R +FE +++N AE V ++ +D +D LK +D+Y +
Sbjct: 157 PSCHEVQ------GFMPGRLEFETEFENEAEGPVKDMVFEPDDQPLDIELKFAILDIYNS 210
Query: 124 KLRERARRKRVVKDFQLI 141
+L RA +KR++ + L+
Sbjct: 211 RLTTRAEKKRLLFENHLM 228
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 78 GYMPLRDDFEWQYDNNAESVVSGLIHLE-DTDVDTTLKLVHVDMYINKLRERARRKRVVK 136
GY R +F+ +YDN+AE ++ + E D++ D LKL + +Y+++L ER RRK +
Sbjct: 277 GYNSKRHEFDPEYDNDAEQALAEMEFKETDSETDRELKLRVLRIYLSRLDERKRRKEFIL 336
Query: 137 DFQLI-PKFFNAQLNPETKTVKRKF 160
+ L+ P L E K V ++
Sbjct: 337 ERNLLFPNPLEKDLTNEDKEVYHRY 361
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1
SV=1
Length = 548
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 78 GYMPLRDDFEWQYDNNAESVVSGL-IHLEDTDVDTTLKLVHVDMYINKLRERARRKRVVK 136
GY R++FE ++DN+AE +++ + DTD + KL + +Y +L ER RRK V
Sbjct: 274 GYNLKREEFEIEHDNDAEQLLADMEFKDSDTDAEREQKLQVLRIYSKRLDERKRRKEFVL 333
Query: 137 DFQLI-PKFFNAQLNPETKTVKRKFNKDDSPENGAVVNVLDFGSGGWWFKFKSKSSHK 193
+ L+ P + L+ E + + + S + +F+SK HK
Sbjct: 334 ERNLLYPDQYEMSLSAEERKI--------------------YKSCKVFARFQSKEEHK 371
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1
SV=1
Length = 487
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 79 YMPLRDDFEWQYDNNAESVVSGLIHLE-DTDVDTTLKLVHVDMYINKLRERARRKRVVKD 137
Y R++F+ +YDN+AE +++ + E DT + LKL + +Y +L ER RRK + +
Sbjct: 233 YNQKREEFDPEYDNDAEQLLAEMEFKENDTPEEHELKLRVLRIYSKRLDERKRRKEFIIE 292
Query: 138 FQLI-PKFFNAQLNPETKTVKRKFN 161
L+ P F L+ E K R+ +
Sbjct: 293 RNLLYPNPFEKDLSQEEKVQCRRLD 317
>sp|Q7KSD8|TAD2A_DROME Transcriptional adapter 2A OS=Drosophila melanogaster GN=Rpb4 PE=1
SV=1
Length = 562
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 78 GYMPLRDDFEWQYDNNAESVVSGLIHLEDTDVDT-------------TLKLVHVDMYINK 124
GY R DF+ YD +AES++S ++ D D L+L V Y N+
Sbjct: 248 GYRCARGDFDTPYDTSAESLLSIMVDHRGRDDDNEASESEFEREVTEELQLGLVRAYNNR 307
Query: 125 LRERARRKRVVKDFQLI 141
LRER RR ++++ LI
Sbjct: 308 LRERQRRYKIMRQHGLI 324
>sp|Q9P7J7|ADA2_SCHPO Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ada2 PE=1 SV=1
Length = 437
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 78 GYMPLRDDFEWQYDNNAESVVSGL-----IHLEDTDVDTTLKLVHVDMYINKLRERARRK 132
GYMP R +F+ +Y N AE + + +H E + LKL +++Y ++L RA RK
Sbjct: 165 GYMPGRLEFDQEYMNEAELPIKDMNFDDDLH-ESAKHEMQLKLTMLNIYNSRLTRRAVRK 223
Query: 133 RVVKDFQLI 141
+ + + L+
Sbjct: 224 QTIFNHNLL 232
>sp|Q02049|VE1_HPV25 Replication protein E1 OS=Human papillomavirus type 25 GN=E1 PE=3
SV=2
Length = 604
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 84 DDFEWQYDNNAESVVSGLIHLEDTDVDTTLKLVHV------DMYINKLRERARRKRVVKD 137
+D E +D + +S +S L+ D + + +L H+ + + KL+ + + V
Sbjct: 28 NDLEQLFDQDTDSDISDLLDENDVEQGNSRELFHLQECQESEEQLQKLKRKYLSPKAVA- 86
Query: 138 FQLIPKFFNAQLNPETKTVKRKFNKDDS 165
QL P+F + L+P+ K+ +R F + DS
Sbjct: 87 -QLSPRFESISLSPQQKSKRRLFAEQDS 113
>sp|P06420|VE1_HPV08 Replication protein E1 OS=Human papillomavirus type 8 GN=E1 PE=3
SV=1
Length = 603
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 84 DDFEWQYDNNAESVVSGLIHLEDTDVDTTLKLVH------VDMYINKLRERARRKRVVKD 137
+DFE ++ + +S +S L+ D D +L+L H + + KL+ + + V
Sbjct: 28 NDFEQLFERDTDSDISDLLDNCDLDQGNSLELFHQQECEQSEEQLQKLKRKYLSPKAVA- 86
Query: 138 FQLIPKFFNAQLNPETKTVKRKFNKDDS 165
QL P+ + L+P+ K+ +R F + DS
Sbjct: 87 -QLSPRLQSISLSPQQKSKRRLFAEQDS 113
>sp|Q9W701|CLCKB_XENLA Chloride channel protein ClC-Kb OS=Xenopus laevis GN=clcnkb PE=1
SV=1
Length = 689
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 38 LKNNQVKIIDMTDQLSEGPLATLPKGGPPIHIAQEKADQIGYMPLRDDFEWQYDNNAE 95
+KN K++ +T LS G L K GP +H++ A +G M R Y+N ++
Sbjct: 142 IKNFGAKVVGLTCTLSAGSTMFLGKVGPFVHLSSMIAAYLGRM--RTSVAGDYENKSK 197
>sp|B2J5P1|DXS_NOSP7 1-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=dxs PE=3 SV=1
Length = 635
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 101 LIHLEDTDVDTTLKLVHVDMYINKLRERARRKRVVKD-----FQLIPKFFNAQLNPETKT 155
L+ L D D+ + + + Y+NK+R ++ + +KD F+ IP F L+PE
Sbjct: 168 LVVLNDNDMSISRNVGAIPRYLNKMR-LSQPVQFIKDNLEEQFKQIP-FVGESLSPELGR 225
Query: 156 VKRKFNKDDSPENGAVVNVLDF 177
+K + P+ GAV L F
Sbjct: 226 IKEGMKRLAVPKVGAVFEELGF 247
>sp|Q8DL74|DXS_THEEB 1-deoxy-D-xylulose-5-phosphate synthase OS=Thermosynechococcus
elongatus (strain BP-1) GN=dxs PE=3 SV=2
Length = 638
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 101 LIHLEDTDVDTTLKLVHVDMYINKLRERARRKRVV----KDFQLIPKFFNAQLNPETKTV 156
++ L D ++ + + + Y+NK+R + + + + F+ IP FF L PE + +
Sbjct: 168 MVVLNDNEMSISPNVGAIPRYLNKIRLSPQVQFITDNLEEQFKHIP-FFGENLTPEMQRL 226
Query: 157 KRKFNKDDSPENGAVVNVLDF 177
K + P+ GAV L F
Sbjct: 227 KEGMKRLAVPKVGAVFEELGF 247
>sp|O66616|Y255_AQUAE Uncharacterized protein aq_255 OS=Aquifex aeolicus (strain VF5)
GN=aq_255 PE=4 SV=1
Length = 161
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 38 LKNNQVKIIDMTDQLSEGPLATLPKGG-PPIHIAQEKADQIGYMPLRD 84
LK + + ++D SEG +P G P I + +EK + Y+P+R+
Sbjct: 77 LKGDDILVVDAGKSFSEGKFEKVPMGDLPSILMDKEKWAGLAYIPMRE 124
>sp|Q0I6G6|SYA_SYNS3 Alanine--tRNA ligase OS=Synechococcus sp. (strain CC9311) GN=alaS
PE=3 SV=1
Length = 893
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 18/138 (13%)
Query: 1 MSWSLEFSFIQVGTEAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLATL 60
+ W+ E S G + + +S F E + W DV+ N +II M + ++ A+
Sbjct: 115 IEWAWELSTDLFGIDPKHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDE--ADNFWASG 172
Query: 61 PKG--GPPIHIAQEKADQIG--YMPLRDDFEW---------QYDNNAESVVSGLIHLEDT 107
P G GP I + ++G + L DD + QY+ +AE L L +
Sbjct: 173 PTGPCGPCSEIYYDFNPELGDEGIDLEDDDRFIEFYNLVFMQYNRDAEGT---LTPLANR 229
Query: 108 DVDTTLKLVHVDMYINKL 125
++DT L L + + K+
Sbjct: 230 NIDTGLGLERMAQILQKV 247
>sp|B0JL88|DXS_MICAN 1-deoxy-D-xylulose-5-phosphate synthase OS=Microcystis aeruginosa
(strain NIES-843) GN=dxs PE=3 SV=1
Length = 636
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 101 LIHLEDTDVDTTLKLVHVDMYINKLRERARRKRVV----KDFQLIPKFFNAQLNPETKTV 156
++ L D ++ + + + Y+NK+R + + + F+ +P FF L PE + V
Sbjct: 168 MVILNDNEMSISPNVGAISRYLNKVRLSEPVQFIADNLEEQFKNLP-FFGDSLTPEMERV 226
Query: 157 KRKFNKDDSPENGAVVNVLDF 177
K + P+ GAV+ L F
Sbjct: 227 KEGMKRLAVPKVGAVIEELGF 247
>sp|O40619|VE1_HPVR7 Replication protein E1 OS=Human papillomavirus type RTRX7 GN=E1
PE=3 SV=1
Length = 606
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 82 LRDDFEWQYDNNAESVVSGLIHLEDTDVDTTLKLVH------VDMYINKLRERARRKRVV 135
L +DFE ++ +A+S VS L+ + + +L+L H + + L+ + + V
Sbjct: 26 LENDFEQLFEQDADSDVSDLLDNGELEQGNSLELFHQQECKQSEEQLQILKRKYLSPKAV 85
Query: 136 KDFQLIPKFFNAQLNPETKTVKRKFNKDDS 165
QL P+ L+P+ K+ +R F + DS
Sbjct: 86 A--QLSPRLELMSLSPQQKSKRRLFAEQDS 113
>sp|B1WWM7|DXS_CYAA5 1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain
ATCC 51142) GN=dxs PE=3 SV=1
Length = 636
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 101 LIHLEDTDVDTTLKLVHVDMYINKLR----ERARRKRVVKDFQLIPKFFNAQLNPETKTV 156
++ L D ++ + + + Y+NK+R + + + F+ +P FF L PE + V
Sbjct: 168 MVVLNDNEMSISPNVGAISRYLNKVRLSDPVQFLSDNLEEQFKHLP-FFGESLTPEMERV 226
Query: 157 KRKFNKDDSPENGAVVNVLDF 177
K + P+ GAV+ L F
Sbjct: 227 KEGMKRLAMPKVGAVIEELGF 247
>sp|P50759|VE1_HPV21 Replication protein E1 OS=Human papillomavirus type 21 GN=E1 PE=3
SV=1
Length = 603
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 82 LRDDFEWQYDNNAESVVSGLIHLEDTDVDTTLKLVH------VDMYINKLRERARRKRVV 135
+ +D E +D + +S +S L+ D + + +L H + + KL+ + + V
Sbjct: 26 VENDLEELFDRDTDSDISELLDDNDLEQGNSRELFHQQESKESEEQLQKLKRKYLSPKAV 85
Query: 136 KDFQLIPKFFNAQLNPETKTVKRKFNKDDSPENGAVVNVLDFGS 179
QL P+ + L+P+ K+ +R F + DS + N D S
Sbjct: 86 A--QLSPRLESITLSPQQKSKRRLFAEQDSGLECTLTNEEDVSS 127
>sp|Q7U3R9|SYA_SYNPX Alanine--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=alaS
PE=3 SV=1
Length = 889
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 18/138 (13%)
Query: 1 MSWSLEFSFIQVGTEAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLATL 60
+ W+ E S G + R +S F E + W DV+ N +II M + ++ A+
Sbjct: 115 IEWAWELSTQVYGIDPRNLVVSVFREDDEAEQIWRDVVGVNTKRIIRMDE--ADNFWASG 172
Query: 61 PKG--GPPIHIAQEKADQIG-----------YMPLRDDFEWQYDNNAESVVSGLIHLEDT 107
P G GP I + ++G ++ + QY+ +AE L L +
Sbjct: 173 PTGPCGPCSEIYYDFKPELGDDGIDLEDDDRFIEFYNLVFMQYNRDAE---GNLTPLANR 229
Query: 108 DVDTTLKLVHVDMYINKL 125
++DT + L + + K+
Sbjct: 230 NIDTGMGLERMAQILQKV 247
>sp|Q3AVV3|SYA_SYNS9 Alanine--tRNA ligase OS=Synechococcus sp. (strain CC9902) GN=alaS
PE=3 SV=2
Length = 890
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 18/138 (13%)
Query: 1 MSWSLEFSFIQVGTEAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLATL 60
+ W+ + S G + + +S F E + W DV+ N +II M + ++ A+
Sbjct: 115 IEWAWQLSTEVYGIDPKHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDE--ADNFWASG 172
Query: 61 PKG--GPPIHIAQEKADQIG--YMPLRDDFEW---------QYDNNAESVVSGLIHLEDT 107
P G GP I + ++G + L DD + QY+ +AE L L +
Sbjct: 173 PTGPCGPCSEIYYDFKPELGDEGIDLEDDDRFIEFYNLVFMQYNRDAE---GSLTPLANR 229
Query: 108 DVDTTLKLVHVDMYINKL 125
++DT L L + + K+
Sbjct: 230 NIDTGLGLERMAQILQKV 247
>sp|B1GZ76|RPOC_UNCTG DNA-directed RNA polymerase subunit beta' OS=Uncultured termite
group 1 bacterium phylotype Rs-D17 GN=rpoC PE=3 SV=1
Length = 1593
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 104 LEDTDVDTTLKLVHVDMYINKLRERARRKRVVKDFQLIPKFFNAQLNPE 152
LE+ ++D +K ++ + I K + A R R+++ +++ F N+Q PE
Sbjct: 378 LEEINLDDEMKNIYAE--IKKTKSDAERARLLRKLRVVEGFLNSQTRPE 424
>sp|Q05134|VE1_HPV12 Replication protein E1 OS=Human papillomavirus type 12 GN=E1 PE=3
SV=2
Length = 604
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 82 LRDDFEWQYDNNAESVVSGLIHLEDTDVDTTLKLVHVDMYINK------LRERARRKRVV 135
L +DFE ++ + +S VS L+ + + +L+L H L+ + + V
Sbjct: 26 LENDFEQLFEQDTDSDVSDLLDNGELEQGNSLELFHQQECEQSEEQLQILKRKYLSPKAV 85
Query: 136 KDFQLIPKFFNAQLNPETKTVKRKFNKDDS 165
QL P+ + L+P+ K+ +R F + DS
Sbjct: 86 A--QLSPRLESISLSPQQKSKRRLFAEQDS 113
>sp|Q3AGN4|SYA_SYNSC Alanine--tRNA ligase OS=Synechococcus sp. (strain CC9605) GN=alaS
PE=3 SV=1
Length = 889
Score = 30.4 bits (67), Expect = 9.1, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 18/138 (13%)
Query: 1 MSWSLEFSFIQVGTEAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLSEGPLATL 60
+ W+ E S G + + +S F E ++ W DV+ N +II M + ++ A+
Sbjct: 115 IEWAWELSTGVYGIDPKNLVVSVFREDDEAELIWRDVVGVNPKRIIRMDE--ADNFWASG 172
Query: 61 PKG--GPPIHIAQEKADQIG-----------YMPLRDDFEWQYDNNAESVVSGLIHLEDT 107
P G GP I + ++G ++ + QY+ +AE L L +
Sbjct: 173 PTGPCGPCSEIYYDFKPELGDEDIDLEDDDRFIEFYNLVFMQYNRDAEGT---LTPLANR 229
Query: 108 DVDTTLKLVHVDMYINKL 125
++DT + L + + K+
Sbjct: 230 NIDTGMGLERMAQILQKV 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,332,199
Number of Sequences: 539616
Number of extensions: 3514689
Number of successful extensions: 8818
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 8786
Number of HSP's gapped (non-prelim): 40
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)