Query psy10031
Match_columns 218
No_of_seqs 166 out of 228
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 16:06:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0457|consensus 100.0 3.3E-46 7.2E-51 347.9 10.1 184 4-204 98-284 (438)
2 COG5114 Histone acetyltransfer 100.0 1E-43 2.3E-48 322.6 9.0 188 4-215 89-296 (432)
3 PF00249 Myb_DNA-binding: Myb- 88.8 0.17 3.7E-06 33.5 0.7 19 5-23 28-47 (48)
4 PF13921 Myb_DNA-bind_6: Myb-l 86.8 0.47 1E-05 32.5 1.9 24 5-29 24-47 (60)
5 cd00167 SANT 'SWI3, ADA2, N-Co 78.6 1.4 2.9E-05 27.2 1.5 19 5-23 26-44 (45)
6 smart00717 SANT SANT SWI3, AD 76.0 1.7 3.7E-05 27.1 1.4 19 5-23 28-46 (49)
7 COG5259 RSC8 RSC chromatin rem 63.3 3.6 7.9E-05 40.6 1.3 20 4-23 304-323 (531)
8 PHA03089 late transcription fa 55.2 8.6 0.00019 33.6 2.0 23 1-23 1-27 (191)
9 TIGR01557 myb_SHAQKYF myb-like 53.4 11 0.00024 26.5 2.1 20 7-26 36-56 (57)
10 KOG1279|consensus 32.9 27 0.00058 34.8 1.8 19 4-22 278-296 (506)
11 PF12488 DUF3704: Protein of u 25.9 24 0.00051 21.8 0.1 10 75-84 6-15 (27)
12 PRK13259 regulatory protein Sp 21.8 1.3E+02 0.0027 23.6 3.4 40 80-127 47-86 (94)
13 PF03286 Pox_Ag35: Pox virus A 21.3 56 0.0012 28.8 1.5 27 1-27 1-31 (200)
No 1
>KOG0457|consensus
Probab=100.00 E-value=3.3e-46 Score=347.92 Aligned_cols=184 Identities=24% Similarity=0.358 Sum_probs=154.7
Q ss_pred ccccCCCCCHHHHHHHhHhhcccCCCCCCchhhhhhcccccccCCccccC-CCCCCC-CCCCCCCCCCCcchhhhhccCC
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTDQLS-EGPLAT-LPKGGPPIHIAQEKADQIGYMP 81 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s~~~~~~lp~~~~~~~~~l~d~~~~~~-~~Pl~p-~~s~~pP~~s~p~~~e~~GYmP 81 (218)
.|+|+||||++||++||+++||+|++++.|+-... ...+...++..+.+ ..|+.| ...+.||..++|.+++++||||
T Consensus 98 IA~hIGtKtkeeck~hy~k~fv~s~~~~~~~i~~~-~~~~q~e~~~~~k~~~~~~~~~~~~pr~p~~~~p~~~e~~gyMp 176 (438)
T KOG0457|consen 98 IADHIGTKTKEECKEHYLKHFVNSPIFPLPDISLG-IGVNQDEDAAMAKNRAEPFQPTDLVPRKPGVSNPLRREISGYMP 176 (438)
T ss_pred HHHHHcccchHHHHHHHHHHHhcCccccccccccc-cCcchHHHhhhcccccccCCCCCCCCCCCCCCCchHHHHhhhCc
Confidence 48899999999999999999999999976632111 01112222222223 445555 2334678899999999999999
Q ss_pred CCCcCCccccCchhhhhhcCcc-CCCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHhhhcCCcchhhhcccC
Q psy10031 82 LRDDFEWQYDNNAESVVSGLIH-LEDTDVDTTLKLVHVDMYINKLRERARRKRVVKDFQLIPKFFNAQLNPETKTVKRKF 160 (218)
Q Consensus 82 ~R~dFE~EydNdAE~li~dm~f-~~D~~~e~~lKl~~l~~Yn~rL~eR~rRK~ii~e~~Ll~~~~~~~~~~~~~~~erk~ 160 (218)
+|.|||.||||+||++|+||+| ++|++.+++||+++|+||++||++|.|||++|++|||+ +|+++|+ .++++
T Consensus 177 ~R~dFd~Eydn~AE~li~dm~f~e~D~~~d~elKla~ldiY~srl~eR~RRK~~I~d~nLl-~~rk~q~------~e~~~ 249 (438)
T KOG0457|consen 177 GRLDFDEEYDNEAEQLIRDMEFEEDDTEEDHELKLAVLDIYNSRLKERKRRKRFIRDRNLL-DYRKNQA------MEKRL 249 (438)
T ss_pred cchhhhhhhcchhhhhHhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhhhH------HHhhc
Confidence 9999999999999999999999 99999999999999999999999999999999999999 7888887 99999
Q ss_pred CCCCChhhhhhhhhccCCCCCccccccChhHHHHHHHHHHHHHH
Q psy10031 161 NKDDSPENGAVVNVLDFGSGGWWFKFKSKSSHKIYQVMIILVRS 204 (218)
Q Consensus 161 tkEErel~~~l~~~lkp~~~~~far~~s~edh~~~~~~ii~~~~ 204 (218)
|||| +.+++++|+ ||||+|++||++|+..++.+-.
T Consensus 250 skEe----r~l~~s~k~-----fAR~~t~~d~~kfl~~~~eE~~ 284 (438)
T KOG0457|consen 250 SKEE----RELYNSIKV-----FARFLTKSDHDKFLGSVAEEKE 284 (438)
T ss_pred cHHH----HHHHHHHHH-----HhcccChHHHHHHHHHHHHHHH
Confidence 9999 667888888 9999999999999999985543
No 2
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-43 Score=322.62 Aligned_cols=188 Identities=21% Similarity=0.328 Sum_probs=157.1
Q ss_pred ccccCCCCCHHHHHHHhHhhcccCCCCCCchhhhhhcccccccCCcc---------ccCCCCCCCCCCCCCCCCCCcchh
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEGTIGKVTWEDVLKNNQVKIIDMTD---------QLSEGPLATLPKGGPPIHIAQEKA 74 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s~~~~~~lp~~~~~~~~~l~d~~~---------~~~~~Pl~p~~s~~pP~~s~p~~~ 74 (218)
.|.|+|.|+++||++||+++|+.|... |+|.+.. ...++...+ .+..+|+. +.+|.+|+|.||
T Consensus 89 IadyiGsr~kee~k~HylK~y~es~~y--pl~~i~~--~~~v~q~~f~~qrr~rie~f~~ppi~----prkP~aS~P~ch 160 (432)
T COG5114 89 IADYIGSRAKEEIKSHYLKMYDESKYY--PLPDITQ--NIHVPQDEFLEQRRHRIETFELPPIN----PRKPKASNPYCH 160 (432)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhcccc--ccccccc--CCCCchHHHHHHHHhhhhhccCCCCC----CCCCCCCCCchh
Confidence 477899999999999999999999886 4443320 001111111 13344444 368999999999
Q ss_pred hhhccCCCCCcCCccccCchhhhhhcCcc-CCCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHhhhcCCcch
Q psy10031 75 DQIGYMPLRDDFEWQYDNNAESVVSGLIH-LEDTDVDTTLKLVHVDMYINKLRERARRKRVVKDFQLIPKFFNAQLNPET 153 (218)
Q Consensus 75 e~~GYmP~R~dFE~EydNdAE~li~dm~f-~~D~~~e~~lKl~~l~~Yn~rL~eR~rRK~ii~e~~Ll~~~~~~~~~~~~ 153 (218)
+++||||+|.|||+||.|+||..|+||.| +++.+++++||+++|+|||+||+.|.+||+.|++++|+ +|++-|+
T Consensus 161 eiqgyMPgRleFd~EymnEaE~pikDm~fd~d~~el~~~lk~a~LdiYnsrlt~Ra~rK~~if~~nLm-Dyr~Lqa---- 235 (432)
T COG5114 161 EIQGYMPGRLEFDVEYMNEAEVPIKDMSFDGDKEELKKKLKNATLDIYNSRLTFRARRKHAIFGKNLM-DYRNLQA---- 235 (432)
T ss_pred hhhccCCCccccchhhhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHh----
Confidence 99999999999999999999999999999 88899999999999999999999999999999999999 8998887
Q ss_pred hhhcccCCCCCChhhhhhhhhccCCCCCccccccChhHHHHHHHHHHH----------HHHHhccccchhhc
Q psy10031 154 KTVKRKFNKDDSPENGAVVNVLDFGSGGWWFKFKSKSSHKIYQVMIIL----------VRSYLSSSSETLET 215 (218)
Q Consensus 154 ~~~erk~tkEErel~~~l~~~lkp~~~~~far~~s~edh~~~~~~ii~----------~~~~~~~~~~~~~~ 215 (218)
.+||+|||| +.++|++|+ |||++|+.||++|+++|.- ---|-+.|+-|||.
T Consensus 236 --~dkk~skEe----~~l~N~iK~-----fAr~lT~~Df~~F~~~~~e~v~~~kri~~LqewR~~glttle~ 296 (432)
T COG5114 236 --KDKKRSKEE----CGLVNSIKW-----FARYLTKSDFNVFFRDILEGVYIEKRIHELQEWRNNGLTTLEA 296 (432)
T ss_pred --hhhhccHHH----HhHHHhhhH-----HHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCchhhhh
Confidence 899999999 667777666 9999999999999997652 23578889999984
No 3
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=88.79 E-value=0.17 Score=33.55 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=15.9
Q ss_pred cccCC-CCCHHHHHHHhHhh
Q psy10031 5 LEFSF-IQVGTEAREEYISR 23 (218)
Q Consensus 5 ~~~~g-tRT~eEc~~HY~~~ 23 (218)
|.++| +||+.+|+.||.++
T Consensus 28 a~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 28 AKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp HHHHSSSSTHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHhh
Confidence 55666 99999999999864
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=86.78 E-value=0.47 Score=32.45 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=18.7
Q ss_pred cccCCCCCHHHHHHHhHhhcccCCC
Q psy10031 5 LEFSFIQVGTEAREEYISRFLEGTI 29 (218)
Q Consensus 5 ~~~~gtRT~eEc~~HY~~~Yi~s~~ 29 (218)
|+++|+||+..|+.+|.. +|....
T Consensus 24 a~~l~~Rt~~~~~~r~~~-~l~~~~ 47 (60)
T PF13921_consen 24 AEHLGNRTPKQCRNRWRN-HLRPKI 47 (60)
T ss_dssp HHHSTTS-HHHHHHHHHH-TTSTTS
T ss_pred HHHHCcCCHHHHHHHHHH-HCcccc
Confidence 778889999999999999 555433
No 5
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=78.57 E-value=1.4 Score=27.21 Aligned_cols=19 Identities=11% Similarity=-0.050 Sum_probs=16.1
Q ss_pred cccCCCCCHHHHHHHhHhh
Q psy10031 5 LEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 5 ~~~~gtRT~eEc~~HY~~~ 23 (218)
|..+++||+.+|+.||...
T Consensus 26 a~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 26 AKELPGRTPKQCRERWRNL 44 (45)
T ss_pred HhHcCCCCHHHHHHHHHHh
Confidence 5677889999999999764
No 6
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=76.01 E-value=1.7 Score=27.08 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=16.2
Q ss_pred cccCCCCCHHHHHHHhHhh
Q psy10031 5 LEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 5 ~~~~gtRT~eEc~~HY~~~ 23 (218)
|+.+++||+.+|+.+|...
T Consensus 28 a~~~~~rt~~~~~~~~~~~ 46 (49)
T smart00717 28 AKELPGRTAEQCRERWNNL 46 (49)
T ss_pred HHHcCCCCHHHHHHHHHHH
Confidence 5677899999999999864
No 7
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=63.34 E-value=3.6 Score=40.56 Aligned_cols=20 Identities=0% Similarity=-0.082 Sum_probs=18.0
Q ss_pred ccccCCCCCHHHHHHHhHhh
Q psy10031 4 SLEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~ 23 (218)
.|-|||+||+|+|--||++-
T Consensus 304 VA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 304 VARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred HHHHhCCCCHHHHHHHHHcC
Confidence 47899999999999999874
No 8
>PHA03089 late transcription factor VLTF-4; Provisional
Probab=55.21 E-value=8.6 Score=33.64 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCcccccCCC----CCHHHHHHHhHhh
Q psy10031 1 MSWSLEFSFI----QVGTEAREEYISR 23 (218)
Q Consensus 1 ~~~~~~~~gt----RT~eEc~~HY~~~ 23 (218)
||||...|.+ +|-+|+|.|--..
T Consensus 1 MSWSinlg~~~dnFkTldEIRAhvkst 27 (191)
T PHA03089 1 MSWSINLGNGGDNFKTLDEIRAHVKST 27 (191)
T ss_pred CcccccCCCCCcccccHHHHHHHhhcc
Confidence 9999999887 9999999998877
No 9
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=53.43 E-value=11 Score=26.52 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=16.7
Q ss_pred cCCCC-CHHHHHHHhHhhccc
Q psy10031 7 FSFIQ-VGTEAREEYISRFLE 26 (218)
Q Consensus 7 ~~gtR-T~eEc~~HY~~~Yi~ 26 (218)
++.++ |+.+|+.|+.+||+.
T Consensus 36 ~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 36 MVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred cCCCCCCHHHHHHHHHHHHcc
Confidence 34577 999999999999874
No 10
>KOG1279|consensus
Probab=32.87 E-value=27 Score=34.79 Aligned_cols=19 Identities=0% Similarity=-0.017 Sum_probs=17.5
Q ss_pred ccccCCCCCHHHHHHHhHh
Q psy10031 4 SLEFSFIQVGTEAREEYIS 22 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~ 22 (218)
.|.|||+||+++|-.|+++
T Consensus 278 Va~hVg~ks~eqCI~kFL~ 296 (506)
T KOG1279|consen 278 VADHVGTKSQEQCILKFLR 296 (506)
T ss_pred HHhccCCCCHHHHHHHHHh
Confidence 4789999999999999987
No 11
>PF12488 DUF3704: Protein of unknown function (DUF3704) ; InterPro: IPR022173 This domain family is found in eukaryotes, and is approximately 30 amino acids in length.
Probab=25.86 E-value=24 Score=21.83 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=7.6
Q ss_pred hhhccCCCCC
Q psy10031 75 DQIGYMPLRD 84 (218)
Q Consensus 75 e~~GYmP~R~ 84 (218)
...||||.|+
T Consensus 6 aS~gyMp~s~ 15 (27)
T PF12488_consen 6 ASFGYMPRSG 15 (27)
T ss_pred cccceeeecc
Confidence 4568999875
No 12
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=21.80 E-value=1.3e+02 Score=23.61 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCCCCcCCccccCchhhhhhcCccCCCChhhhHHHHHHHHHHHHHHHH
Q psy10031 80 MPLRDDFEWQYDNNAESVVSGLIHLEDTDVDTTLKLVHVDMYINKLRE 127 (218)
Q Consensus 80 mP~R~dFE~EydNdAE~li~dm~f~~D~~~e~~lKl~~l~~Yn~rL~e 127 (218)
||.|..-+-+| +|+.+|-..+.-.+|.-++|++|..-+.+
T Consensus 47 MPs~k~~~g~y--------~DI~~Pit~e~Re~i~~aVl~aY~~~~~~ 86 (94)
T PRK13259 47 MPSKRTPDGEF--------RDIAHPINSDTREKIQDAILKEYERVGEE 86 (94)
T ss_pred CcCcCCCCCcE--------EEEEccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 77777655444 56666777888899999999999887765
No 13
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=21.29 E-value=56 Score=28.80 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCcccccC----CCCCHHHHHHHhHhhcccC
Q psy10031 1 MSWSLEFS----FIQVGTEAREEYISRFLEG 27 (218)
Q Consensus 1 ~~~~~~~~----gtRT~eEc~~HY~~~Yi~s 27 (218)
||||...+ |.+|-+|.|.|--..=-++
T Consensus 1 MsWs~~~~~~~~~f~tl~eiR~hlrs~ae~~ 31 (200)
T PF03286_consen 1 MSWSINLGNGGSNFKTLEEIRAHLRSTAEGC 31 (200)
T ss_pred CceeEecCCCCccceeHHHHHHHHhhhcccc
Confidence 89998754 4799999999998876654
Done!