Query psy10031
Match_columns 218
No_of_seqs 166 out of 228
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 16:06:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 96.7 0.00043 1.5E-08 50.7 1.0 26 4-29 43-68 (79)
2 2elk_A SPCC24B10.08C protein; 96.3 0.0011 3.6E-08 45.5 1.1 23 4-26 35-58 (58)
3 1x41_A Transcriptional adaptor 96.3 0.0012 4E-08 45.4 1.3 26 4-29 34-59 (60)
4 1wgx_A KIAA1903 protein; MYB D 94.6 0.01 3.5E-07 43.2 1.2 20 4-23 37-56 (73)
5 2yum_A ZZZ3 protein, zinc fing 93.9 0.017 5.8E-07 40.9 1.1 25 4-28 39-63 (75)
6 2cqr_A RSGI RUH-043, DNAJ homo 91.6 0.086 3E-06 37.9 2.2 20 4-23 47-66 (73)
7 2cjj_A Radialis; plant develop 91.1 0.059 2E-06 40.6 0.9 20 4-23 37-56 (93)
8 4eef_G F-HB80.4, designed hema 90.2 0.096 3.3E-06 38.3 1.3 18 4-21 49-66 (74)
9 1gvd_A MYB proto-oncogene prot 86.3 0.35 1.2E-05 31.6 2.0 20 4-23 29-48 (52)
10 1guu_A C-MYB, MYB proto-oncoge 85.1 0.37 1.3E-05 31.4 1.7 20 4-23 29-48 (52)
11 2dim_A Cell division cycle 5-l 84.1 0.54 1.8E-05 32.6 2.2 25 4-29 35-59 (70)
12 2d9a_A B-MYB, MYB-related prot 80.3 0.62 2.1E-05 31.3 1.3 20 4-23 34-53 (60)
13 2cu7_A KIAA1915 protein; nucle 80.2 0.48 1.6E-05 33.2 0.8 23 4-26 34-56 (72)
14 2eqr_A N-COR1, N-COR, nuclear 74.7 1 3.4E-05 30.7 1.1 19 4-22 37-55 (61)
15 3zqc_A MYB3; transcription-DNA 73.1 2.7 9.1E-05 32.3 3.3 25 4-29 28-52 (131)
16 2ltp_A Nuclear receptor corepr 73.1 0.9 3.1E-05 33.3 0.0 20 4-23 41-60 (89)
17 2din_A Cell division cycle 5-l 67.2 1.4 4.9E-05 30.0 0.5 18 5-23 35-52 (66)
18 2iw5_B Protein corest, REST co 66.4 1.6 5.5E-05 38.0 0.8 21 4-24 158-178 (235)
19 1gv2_A C-MYB, MYB proto-oncoge 65.4 3 0.0001 30.6 2.0 24 4-28 30-53 (105)
20 2cqq_A RSGI RUH-037, DNAJ homo 64.9 2.4 8.3E-05 30.1 1.4 18 5-23 38-55 (72)
21 2k9n_A MYB24; R2R3 domain, DNA 64.6 2.3 7.8E-05 31.6 1.2 23 4-27 27-49 (107)
22 3fh3_A Putative ECF-type sigma 61.2 2.3 7.8E-05 35.0 0.7 56 157-217 67-136 (158)
23 1w0t_A Telomeric repeat bindin 56.0 4.4 0.00015 26.4 1.3 19 5-23 29-49 (53)
24 1h8a_C AMV V-MYB, MYB transfor 55.2 6.8 0.00023 29.8 2.5 24 5-29 54-77 (128)
25 2xag_B REST corepressor 1; ami 53.6 3.6 0.00012 39.2 0.8 21 4-24 405-425 (482)
26 3osg_A MYB21; transcription-DN 52.6 6.1 0.00021 30.1 1.8 21 4-24 36-56 (126)
27 1ity_A TRF1; helix-turn-helix, 45.9 7.7 0.00026 26.5 1.3 19 5-23 37-57 (69)
28 3zqc_A MYB3; transcription-DNA 44.0 13 0.00045 28.3 2.5 21 4-24 79-99 (131)
29 3osg_A MYB21; transcription-DN 43.2 12 0.00041 28.4 2.2 18 5-22 88-105 (126)
30 1h89_C C-MYB, MYB proto-oncoge 42.6 6.2 0.00021 31.1 0.4 21 4-24 32-52 (159)
31 1h89_C C-MYB, MYB proto-oncoge 35.6 15 0.00052 28.8 1.7 25 4-29 84-108 (159)
32 1h8a_C AMV V-MYB, MYB transfor 35.3 11 0.00039 28.5 0.9 31 4-35 1-31 (128)
33 2yqk_A Arginine-glutamic acid 33.3 23 0.00079 24.0 2.2 15 7-21 38-52 (63)
34 2crg_A Metastasis associated p 28.9 30 0.001 24.0 2.2 16 7-22 37-52 (70)
35 3sjm_A Telomeric repeat-bindin 24.6 28 0.00096 23.7 1.3 15 9-23 44-58 (64)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=96.66 E-value=0.00043 Score=50.71 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=23.6
Q ss_pred ccccCCCCCHHHHHHHhHhhcccCCC
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEGTI 29 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s~~ 29 (218)
.|+++|+||+.+|+.||.++||+.+.
T Consensus 43 IA~~v~~RT~~qcr~r~~~~~i~d~~ 68 (79)
T 2yus_A 43 VSEHVGSRTQDECILHFLRLPIEDPY 68 (79)
T ss_dssp HHHHHSSCCHHHHHHHHTTSCCCCSS
T ss_pred HHHHcCCCCHHHHHHHHHHhcccccc
Confidence 47889999999999999999999865
No 2
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.29 E-value=0.0011 Score=45.49 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.5
Q ss_pred ccccCC-CCCHHHHHHHhHhhccc
Q psy10031 4 SLEFSF-IQVGTEAREEYISRFLE 26 (218)
Q Consensus 4 ~~~~~g-tRT~eEc~~HY~~~Yi~ 26 (218)
.|.++| +||+.+|++||.++||+
T Consensus 35 IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 35 IADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCHHHHHHHHHHHccC
Confidence 367788 99999999999999985
No 3
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.29 E-value=0.0012 Score=45.44 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=23.3
Q ss_pred ccccCCCCCHHHHHHHhHhhcccCCC
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEGTI 29 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s~~ 29 (218)
.|.++++||+.+|++||.+++++++.
T Consensus 34 Ia~~~~~Rt~~qcr~r~~~~l~~~~~ 59 (60)
T 1x41_A 34 VANQMCTKTKEECEKHYMKYFSGPSS 59 (60)
T ss_dssp HHHHHTTSCHHHHHHHHHHHTTCSSC
T ss_pred HHHHhCCCCHHHHHHHHHHHccCCCC
Confidence 47788999999999999999998865
No 4
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.59 E-value=0.01 Score=43.17 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=18.2
Q ss_pred ccccCCCCCHHHHHHHhHhh
Q psy10031 4 SLEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~ 23 (218)
.|++||+||++||+.||...
T Consensus 37 IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 37 VAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp HHHHTTTSCHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHH
Confidence 47889999999999999976
No 5
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.89 E-value=0.017 Score=40.91 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=21.1
Q ss_pred ccccCCCCCHHHHHHHhHhhcccCC
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEGT 28 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s~ 28 (218)
.|+++++||..+|+.||.+++....
T Consensus 39 IA~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 39 IADELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3678899999999999998876653
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=91.55 E-value=0.086 Score=37.93 Aligned_cols=20 Identities=5% Similarity=-0.132 Sum_probs=17.9
Q ss_pred ccccCCCCCHHHHHHHhHhh
Q psy10031 4 SLEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~ 23 (218)
.|.++++||+.||+.||...
T Consensus 47 IA~~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 47 IARCVPSKSKEDCIARYKLL 66 (73)
T ss_dssp HGGGCSSSCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHH
Confidence 58899999999999999864
No 7
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=91.10 E-value=0.059 Score=40.56 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=17.9
Q ss_pred ccccCCCCCHHHHHHHhHhh
Q psy10031 4 SLEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~ 23 (218)
.|.++++||++||+.||...
T Consensus 37 IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 37 VARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp HHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHH
Confidence 47889999999999999885
No 8
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=90.18 E-value=0.096 Score=38.25 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=16.0
Q ss_pred ccccCCCCCHHHHHHHhH
Q psy10031 4 SLEFSFIQVGTEAREEYI 21 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~ 21 (218)
.|+.||+||++||+.||-
T Consensus 49 IA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 49 VAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp TGGGSCSSCHHHHHGGGC
T ss_pred HHHHcCCCCHHHHHHHHH
Confidence 578888999999999994
No 9
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=86.32 E-value=0.35 Score=31.59 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=17.2
Q ss_pred ccccCCCCCHHHHHHHhHhh
Q psy10031 4 SLEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~ 23 (218)
.|.++++||..+|++||.++
T Consensus 29 Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 29 IAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp HHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHH
Confidence 36788999999999999854
No 10
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=85.05 E-value=0.37 Score=31.39 Aligned_cols=20 Identities=0% Similarity=0.014 Sum_probs=17.2
Q ss_pred ccccCCCCCHHHHHHHhHhh
Q psy10031 4 SLEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~ 23 (218)
.|.++++||+.+|++||.++
T Consensus 29 Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 29 IANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHH
Confidence 36788999999999999764
No 11
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.07 E-value=0.54 Score=32.61 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=19.7
Q ss_pred ccccCCCCCHHHHHHHhHhhcccCCC
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEGTI 29 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s~~ 29 (218)
.|.++++||+.+|++||..+ |+..+
T Consensus 35 Ia~~l~~Rt~~qcr~Rw~~~-L~p~i 59 (70)
T 2dim_A 35 IASLLHRKSAKQCKARWYEW-LDPSI 59 (70)
T ss_dssp HHHHSTTCCHHHHHHHHHHT-SCSSS
T ss_pred HHHHhcCCCHHHHHHHHHHH-cCCcc
Confidence 36788999999999999874 55433
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=80.27 E-value=0.62 Score=31.27 Aligned_cols=20 Identities=0% Similarity=-0.079 Sum_probs=16.9
Q ss_pred ccccCCCCCHHHHHHHhHhh
Q psy10031 4 SLEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~ 23 (218)
.|.++++||+.+|++||.++
T Consensus 34 Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 34 LASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp HHHHCSSSCHHHHHHHHHHT
T ss_pred HHHHccCCCHHHHHHHHHHH
Confidence 35788899999999999854
No 13
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=80.24 E-value=0.48 Score=33.17 Aligned_cols=23 Identities=4% Similarity=-0.156 Sum_probs=19.0
Q ss_pred ccccCCCCCHHHHHHHhHhhccc
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLE 26 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~ 26 (218)
.|.++++||..+|+.||..++-.
T Consensus 34 Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 34 ISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999877543
No 14
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.65 E-value=1 Score=30.69 Aligned_cols=19 Identities=5% Similarity=-0.139 Sum_probs=16.6
Q ss_pred ccccCCCCCHHHHHHHhHh
Q psy10031 4 SLEFSFIQVGTEAREEYIS 22 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~ 22 (218)
.|.++++||..+|..||..
T Consensus 37 Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 37 IASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp HHHHCTTSCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHH
Confidence 4678999999999999974
No 15
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=73.06 E-value=2.7 Score=32.34 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=19.9
Q ss_pred ccccCCCCCHHHHHHHhHhhcccCCC
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEGTI 29 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s~~ 29 (218)
.|.++++||+.+|+++|.. ||+...
T Consensus 28 Ia~~~~~Rt~~qcr~Rw~~-~l~p~~ 52 (131)
T 3zqc_A 28 ITSFLPNRSPKQCRERWFN-HLDPAV 52 (131)
T ss_dssp GTTSCTTSCHHHHHHHHHH-HTSTTC
T ss_pred HHHHHCCCCHHHHHHHHhh-ccCccc
Confidence 4788999999999999987 454433
No 16
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=73.09 E-value=0.9 Score=33.28 Aligned_cols=20 Identities=5% Similarity=0.011 Sum_probs=17.6
Q ss_pred ccccCCCCCHHHHHHHhHhh
Q psy10031 4 SLEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~ 23 (218)
.|.++++||..+|+.||..+
T Consensus 41 IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 41 IARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 57889999999999999843
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.17 E-value=1.4 Score=30.00 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=14.4
Q ss_pred cccCCCCCHHHHHHHhHhh
Q psy10031 5 LEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 5 ~~~~gtRT~eEc~~HY~~~ 23 (218)
|.+.| ||+.+|++||..+
T Consensus 35 a~~~g-Rt~~qcr~Rw~~~ 52 (66)
T 2din_A 35 APIIG-RTAAQCLEHYEFL 52 (66)
T ss_dssp HHHHS-SCHHHHHHHHHHH
T ss_pred hcccC-cCHHHHHHHHHHH
Confidence 45555 9999999999864
No 18
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=66.38 E-value=1.6 Score=38.00 Aligned_cols=21 Identities=0% Similarity=-0.126 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHhHhhc
Q psy10031 4 SLEFSFIQVGTEAREEYISRF 24 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Y 24 (218)
.|.++||||..+|+.||+.+-
T Consensus 158 IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 158 ISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp HHHHHSSCCHHHHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHHHH
Confidence 478899999999999998554
No 19
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=65.43 E-value=3 Score=30.58 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=19.3
Q ss_pred ccccCCCCCHHHHHHHhHhhcccCC
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEGT 28 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s~ 28 (218)
.|+++++||+.+|++||..+ ++..
T Consensus 30 Ia~~l~~Rt~~qcr~Rw~~~-l~p~ 53 (105)
T 1gv2_A 30 IAKHLKGRIGKQCRERWHNH-LNPE 53 (105)
T ss_dssp HHTTSTTCCHHHHHHHHHHT-TCCC
T ss_pred HhhhhcCCCHHHHHHHHHhc-cCCc
Confidence 46889999999999999875 4443
No 20
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=64.92 E-value=2.4 Score=30.10 Aligned_cols=18 Identities=6% Similarity=-0.272 Sum_probs=15.0
Q ss_pred cccCCCCCHHHHHHHhHhh
Q psy10031 5 LEFSFIQVGTEAREEYISR 23 (218)
Q Consensus 5 ~~~~gtRT~eEc~~HY~~~ 23 (218)
|+++| ||.+||+.||...
T Consensus 38 A~~lg-Rt~~eV~~~y~~L 55 (72)
T 2cqq_A 38 AHELG-RSVTDVTTKAKQL 55 (72)
T ss_dssp HHHHT-SCHHHHHHHHHHH
T ss_pred HHHhC-CCHHHHHHHHHHH
Confidence 56664 9999999999875
No 21
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=64.57 E-value=2.3 Score=31.61 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=18.7
Q ss_pred ccccCCCCCHHHHHHHhHhhcccC
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEG 27 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s 27 (218)
.|+++++||+.+|+++|..+ |+.
T Consensus 27 Ia~~~~~Rt~~qcr~Rw~~~-L~p 49 (107)
T 2k9n_A 27 ISQLMITRNPRQCRERWNNY-INP 49 (107)
T ss_dssp HHHHTTTSCHHHHHHHHHHH-SSS
T ss_pred HhhhcCCCCHHHHHHHHHHH-Hcc
Confidence 36788999999999999764 444
No 22
>3fh3_A Putative ECF-type sigma factor negative effector; putative anti-sigma W factor, MCSG, PSI, structural genomics; HET: MSE; 2.10A {Bacillus anthracis str} PDB: 3fgg_A
Probab=61.19 E-value=2.3 Score=34.99 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=44.9
Q ss_pred cccCCCCCChhhhhhhhhccCCCCCccc----------cccChhHHHHHHHHHH----HHHHHhccccchhhccc
Q psy10031 157 KRKFNKDDSPENGAVVNVLDFGSGGWWF----------KFKSKSSHKIYQVMII----LVRSYLSSSSETLETVN 217 (218)
Q Consensus 157 erk~tkEErel~~~l~~~lkp~~~~~fa----------r~~s~edh~~~~~~ii----~~~~~~~~~~~~~~~~~ 217 (218)
.-++|+++++-...+...|.| |. ..+|+++|+.|+++|. +.-...|+|..+.|.|-
T Consensus 67 ~ErLs~~eqekl~~i~~eL~P-----yfDKL~~~~ssk~~lt~~e~~~y~~~l~~~~~~~~~~~~~g~~~ve~~p 136 (158)
T 3fh3_A 67 YDALSSEKREEMKKVSMGLQP-----YFDKLNGHKSSKEVLTQEEFDRYMEALMTHEIVRVKTKSTGAIKVEEIP 136 (158)
T ss_dssp GGGSCHHHHHHHHHHHHHHHH-----HHHHHTTCCCHHHHSCHHHHHHHHHHHHHHHHHHHHHTCSSCCCGGGSC
T ss_pred hHHCCHHHHHHHHHHHHHhcc-----HHHHHcCCccHhhhcCHHHHHHHHHHHHHHHHheeecCCCCCccHHhcC
Confidence 347889999888889999998 64 4789999999999986 22267889999998874
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=56.02 E-value=4.4 Score=26.37 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=16.0
Q ss_pred cccCC--CCCHHHHHHHhHhh
Q psy10031 5 LEFSF--IQVGTEAREEYISR 23 (218)
Q Consensus 5 ~~~~g--tRT~eEc~~HY~~~ 23 (218)
|.+++ +||..+|+++|..+
T Consensus 29 a~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 29 LLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp HHHSCCSSCCHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHH
Confidence 46677 89999999999864
No 24
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=55.19 E-value=6.8 Score=29.75 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=19.1
Q ss_pred cccCCCCCHHHHHHHhHhhcccCCC
Q psy10031 5 LEFSFIQVGTEAREEYISRFLEGTI 29 (218)
Q Consensus 5 ~~~~gtRT~eEc~~HY~~~Yi~s~~ 29 (218)
|+++++||..+|++||.. |++...
T Consensus 54 a~~l~~Rt~~qcr~Rw~~-~l~p~~ 77 (128)
T 1h8a_C 54 AKHLKGRIGKQCRERWHN-HLNPEV 77 (128)
T ss_dssp HHHSSSCCHHHHHHHHHH-TTCSSS
T ss_pred HHHhcCCcHHHHHHHHHH-hccccc
Confidence 678899999999999986 455433
No 25
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=53.60 E-value=3.6 Score=39.17 Aligned_cols=21 Identities=0% Similarity=-0.126 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHhHhhc
Q psy10031 4 SLEFSFIQVGTEAREEYISRF 24 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Y 24 (218)
.|++|||||..+|+.||..+.
T Consensus 405 IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 405 ISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp HHHHHSSCCHHHHHHHHHHTT
T ss_pred HHHHhCCCCHHHHHHHHHHHH
Confidence 478899999999999998643
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=52.55 E-value=6.1 Score=30.11 Aligned_cols=21 Identities=5% Similarity=-0.028 Sum_probs=17.8
Q ss_pred ccccCCCCCHHHHHHHhHhhc
Q psy10031 4 SLEFSFIQVGTEAREEYISRF 24 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Y 24 (218)
.|+++++||+.+|+++|..+-
T Consensus 36 Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 36 IAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp HHHTCTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHhhhc
Confidence 367889999999999998653
No 27
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=45.87 E-value=7.7 Score=26.53 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=16.0
Q ss_pred cccCC--CCCHHHHHHHhHhh
Q psy10031 5 LEFSF--IQVGTEAREEYISR 23 (218)
Q Consensus 5 ~~~~g--tRT~eEc~~HY~~~ 23 (218)
|.+++ +||..+|+++|..+
T Consensus 37 a~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 37 LLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp HHHSCCSSCCHHHHHHHHHHH
T ss_pred HHHcCcCCCCHHHHHHHHHHH
Confidence 46677 89999999999865
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=43.97 E-value=13 Score=28.32 Aligned_cols=21 Identities=5% Similarity=-0.002 Sum_probs=17.9
Q ss_pred ccccCCCCCHHHHHHHhHhhc
Q psy10031 4 SLEFSFIQVGTEAREEYISRF 24 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Y 24 (218)
.|.++++||..+|+.||..+-
T Consensus 79 Ia~~l~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 79 IAKLIPGRTDNAIKNRWNSSI 99 (131)
T ss_dssp HTTTSTTCCHHHHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHHHH
Confidence 378899999999999998653
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=43.24 E-value=12 Score=28.43 Aligned_cols=18 Identities=6% Similarity=0.172 Sum_probs=16.3
Q ss_pred cccCCCCCHHHHHHHhHh
Q psy10031 5 LEFSFIQVGTEAREEYIS 22 (218)
Q Consensus 5 ~~~~gtRT~eEc~~HY~~ 22 (218)
|.++++||..+|+.||..
T Consensus 88 a~~l~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 88 AKFFPGRTDIHIKNRWVT 105 (126)
T ss_dssp HTTSTTCCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHH
Confidence 788999999999999965
No 30
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=42.63 E-value=6.2 Score=31.06 Aligned_cols=21 Identities=0% Similarity=0.045 Sum_probs=8.5
Q ss_pred ccccCCCCCHHHHHHHhHhhc
Q psy10031 4 SLEFSFIQVGTEAREEYISRF 24 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Y 24 (218)
.|+++++||+.+|+++|..+.
T Consensus 32 Ia~~l~~Rt~~qcr~Rw~~~l 52 (159)
T 1h89_C 32 IANYLPNRTDVQCQHRWQKVL 52 (159)
T ss_dssp -----------CHHHHHHTTT
T ss_pred HHHHcCCCCHHHHHHHHHHcc
Confidence 478888999999999998654
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=35.64 E-value=15 Score=28.75 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=19.3
Q ss_pred ccccCCCCCHHHHHHHhHhhcccCCC
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEGTI 29 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s~~ 29 (218)
.|.++++||..+|+++|.. |++...
T Consensus 84 Ia~~l~~Rt~~qcr~Rw~~-~l~p~~ 108 (159)
T 1h89_C 84 IAKHLKGRIGKQCRERWHN-HLNPEV 108 (159)
T ss_dssp HHHTSTTCCHHHHHHHHHH-TTCTTS
T ss_pred HHHHcCCCCHHHHHHHHHH-HhCccc
Confidence 3678899999999999976 455433
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=35.32 E-value=11 Score=28.48 Aligned_cols=31 Identities=10% Similarity=0.185 Sum_probs=4.0
Q ss_pred ccccCCCCCHHHHHHHhHhhcccCCCCCCchh
Q psy10031 4 SLEFSFIQVGTEAREEYISRFLEGTIGKVTWE 35 (218)
Q Consensus 4 ~~~~~gtRT~eEc~~HY~~~Yi~s~~~~~~lp 35 (218)
.|+++++||+.+|+++|.. |++.....-+|-
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~-~l~p~~~k~~Wt 31 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQK-VLNPELNKGPWT 31 (128)
T ss_dssp ----------------------CTTCCCSCCC
T ss_pred CccccCCCCHHHHHHHHHH-hhCCCCCCCCCC
Confidence 3788899999999999975 455443333443
No 33
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.33 E-value=23 Score=23.98 Aligned_cols=15 Identities=13% Similarity=-0.135 Sum_probs=13.9
Q ss_pred cCCCCCHHHHHHHhH
Q psy10031 7 FSFIQVGTEAREEYI 21 (218)
Q Consensus 7 ~~gtRT~eEc~~HY~ 21 (218)
++++||..||.++|.
T Consensus 38 ~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 38 LLPNKETGELITFYY 52 (63)
T ss_dssp SCTTSCHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHh
Confidence 699999999999996
No 34
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=28.94 E-value=30 Score=23.97 Aligned_cols=16 Identities=25% Similarity=0.034 Sum_probs=14.6
Q ss_pred cCCCCCHHHHHHHhHh
Q psy10031 7 FSFIQVGTEAREEYIS 22 (218)
Q Consensus 7 ~~gtRT~eEc~~HY~~ 22 (218)
++++||..||-++|..
T Consensus 37 ~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 37 FLPWKSLTSIIEYYYM 52 (70)
T ss_dssp TCSSSCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHh
Confidence 6999999999999974
No 35
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=24.59 E-value=28 Score=23.68 Aligned_cols=15 Identities=0% Similarity=0.087 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHhHhh
Q psy10031 9 FIQVGTEAREEYISR 23 (218)
Q Consensus 9 gtRT~eEc~~HY~~~ 23 (218)
.+||+.+|++.|...
T Consensus 44 ~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 44 VNRTAVMIKDRWRTM 58 (64)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 379999999999753
Done!