RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10031
(218 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-05
Identities = 47/252 (18%), Positives = 77/252 (30%), Gaps = 103/252 (40%)
Query: 2 SWS---------LEFSFIQVGTEAREEYISRFLEGTIGKVTWEDVLKNNQ------VKII 46
SW + F +G E Y + L +I ED L+NN+ + I
Sbjct: 288 SWESFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSI----LEDSLENNEGVPSPMLSIS 342
Query: 47 DMTDQLSEGPLATLPKGGPP---IHIAQEKADQIGYMPLRDDFEWQYDNNAES-VVSG-- 100
++T + + + P + I+ L N A++ VVSG
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEIS-----------LV--------NGAKNLVVSGPP 383
Query: 101 --LIHLEDTDVDTTLKLVHVDMYINKLRE--RARRKRVVKDFQL---IPKFFNAQLNPET 153
L L + TL+ +++ R R+ + F L P F + L P +
Sbjct: 384 QSLYGL-----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LPVASP-FHSHLLVPAS 436
Query: 154 KTVKR-------KFNKDD------SPENGA--------------------VVN------- 173
+ + FN D +G+ V
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 174 ----VLDFGSGG 181
+LDFG GG
Sbjct: 497 KATHILDFGPGG 508
Score = 42.0 bits (98), Expect = 8e-05
Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 69/211 (32%)
Query: 51 QLSEGPLAT---LPKGGPPIHIAQEKADQIGYMPLRDDF---------EWQYDNNAESVV 98
LS G L +P A Q L++ F + D+ +
Sbjct: 10 TLSHGSLEHVLLVP---TASFFI---ASQ-----LQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 99 S------GLI--HLEDTDV---DTTLKLVHVDMYINKLRER-----------ARRKRVVK 136
G + +E + V D L L + L +VK
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 137 DFQLIPKFFNAQLNPETKTVKRKFNKDDSPENGAVVNVLDFGS-------GG-----WWF 184
+LI + A++ KR F+K N A+ + G+ GG +F
Sbjct: 119 TKELIKNYITARI-----MAKRPFDK---KSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 185 KFKSKSSHKIYQVMIILVRSYLSSSSETLET 215
+ + + ++ Y V LV + S+ETL
Sbjct: 171 E-ELRDLYQTYHV---LVGDLIKFSAETLSE 197
Score = 42.0 bits (98), Expect = 9e-05
Identities = 39/206 (18%), Positives = 65/206 (31%), Gaps = 63/206 (30%)
Query: 4 SLEFSFI-QVGTEAREEYISRFLEGTI-GKVTWEDVLKNNQVKIIDMTDQLSEGPL-ATL 60
+L F + G RE Y + E + GK+ E + K T + +G L AT
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT- 1729
Query: 61 PKGGPPIHIAQ------EKADQI-------GYMPLRDDF------EWQYDNNAESVVSGL 101
Q EKA G +P F E Y A + ++ +
Sbjct: 1730 -------QFTQPALTLMEKA--AFEDLKSKGLIPADATFAGHSLGE--Y--AALASLADV 1776
Query: 102 IHLEDTDVDTTLKLVHVDMYINKLRERARRKRVVKDFQLIPKFFNAQLNPETKTVKRKFN 161
+ +E +++V R + V +D + +NP V F+
Sbjct: 1777 MSIESL-----VEVVF-------YRGMTMQVAVPRDELGRSNYGMIAINPG--RVAASFS 1822
Query: 162 KDD--------SPENGAVV-----NV 174
++ G +V NV
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNV 1848
Score = 30.4 bits (68), Expect = 0.48
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 24/64 (37%)
Query: 32 VTWEDVLKNNQVKIID-----------MTDQLSEGP-----LATLPKGGPPIHIAQEKAD 75
V WE + I+D +T + +G +A P D
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP--------DD 539
Query: 76 QIGY 79
G+
Sbjct: 540 DYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.003
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 31/122 (25%)
Query: 82 LRDDFEWQYDNNAESVVSGLIHLEDTDVDTTLKLVHVDMYINKLRERARRKRVVKDFQLI 141
LR ++++ I E + MYI + R R+ D Q+
Sbjct: 87 LRINYKFLMSP---------IKTEQRQ-----PSMMTRMYIEQ------RDRLYNDNQVF 126
Query: 142 PKFFNAQLNPETKTVKRKFNKDDSPENGAVVNVLDFGSGGWW--------FKFKSKSSHK 193
K+ ++ + R+ + P +++ + GSG W +K + K K
Sbjct: 127 AKYNVSR--LQPYLKLRQALLELRPAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 194 IY 195
I+
Sbjct: 184 IF 185
Score = 31.4 bits (70), Expect = 0.24
Identities = 32/232 (13%), Positives = 74/232 (31%), Gaps = 71/232 (30%)
Query: 34 WEDVLKNNQVKIIDMT-DQLSEG-------PLATLPKGGPPIHIAQEKADQIGYMPLRDD 85
W+ V + II+ + + L L+ P HI + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIP-TILLSL----I--- 395
Query: 86 FEWQYD--NNAESVVSGLIH---LEDTDVDTTLKL--VHVDMYINKLRERARRKRVVKDF 138
W ++ VV+ L +E ++T+ + +++++ + E A + +V +
Sbjct: 396 --WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 139 QLIPKFFNAQLNPET--------------------------------KTVKRKFNKDDSP 166
+ F + L P + +++K D +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 167 EN--GAVVNVL-DFGSGGWWFKFKS--KSSHKIYQVMIILVRSYLSSSSETL 213
N G+++N L +K + Y+ ++ + +L E L
Sbjct: 514 WNASGSILNTLQQLK------FYKPYICDNDPKYERLVNAILDFLPKIEENL 559
>2qiw_A PEP phosphonomutase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc
13032}
Length = 255
Score = 31.1 bits (71), Expect = 0.23
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 81 PLRDDFEWQYDNNAESVVSGL-------IHLEDTDVDTTLKLVHVDMYINKLRE-RARRK 132
P+ D E Y + +++ + I++ED ++ + + + R
Sbjct: 82 PVSVDVESGYGLSPADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAAD 141
Query: 133 RVVKDFQLI 141
D +
Sbjct: 142 VAGVDVVIN 150
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 26.9 bits (60), Expect = 1.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 169 GAVVNVLDFGSGGWWF 184
G V V+ GWW+
Sbjct: 30 GVTVEVIRKNLEGWWY 45
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 27.1 bits (60), Expect = 1.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 169 GAVVNVLDFGSGGWWF 184
G V VL+ GWW+
Sbjct: 30 GVEVQVLEKQESGWWY 45
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 25.7 bits (57), Expect = 3.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 169 GAVVNVLDFGSGGWWF 184
G VV+V++ GWWF
Sbjct: 30 GEVVDVIEKNESGWWF 45
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 25.2 bits (56), Expect = 3.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 169 GAVVNVLDFGSGGWWF 184
G ++ + GGWW
Sbjct: 23 GEIITNIRKEDGGWWE 38
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 25.9 bits (57), Expect = 4.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 169 GAVVNVLDFGSGGWWF 184
G V V++ S GWW
Sbjct: 39 GTKVIVMEKCSDGWWR 54
>3c8n_A Probable F420-dependent glucose-6-phosphate dehyd FGD1; TIM barrel,
non-prolyl CIS-peptide, oxidoreductase; 1.90A
{Mycobacterium tuberculosis} PDB: 3b4y_A
Length = 356
Score = 27.4 bits (61), Expect = 4.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 51 QLSEGPLATLPKGGPPIHIA 70
+L + +P GG P++IA
Sbjct: 176 RLKGASIYDVPDGGVPVYIA 195
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 24.9 bits (55), Expect = 7.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 169 GAVVNVLDFGSGGWWF 184
G ++ V+ G GWW
Sbjct: 30 GDILEVILEGEDGWWT 45
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 24.6 bits (54), Expect = 7.7
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 169 GAVVNVLDFGSGGWWF 184
G ++ V + WW+
Sbjct: 28 GDIIRVFFKDNEDWWY 43
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 24.5 bits (54), Expect = 8.3
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 169 GAVVNVLDFGSGGWWF 184
G + +L + WW+
Sbjct: 29 GEKILILRQTTADWWW 44
>1rhc_A F420-dependent alcohol dehydrogenase; (alpha, beta)8 barrel,
oxidoreductase; HET: F42; 1.80A {Methanoculleus
thermophilus} SCOP: c.1.16.3
Length = 330
Score = 26.2 bits (58), Expect = 9.2
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 51 QLSEGPLATLPKGGPPIHIA 70
L + L T P P++ +
Sbjct: 154 TLDKAFLYTKPDDEVPLYFS 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,339,031
Number of extensions: 195301
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 28
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)