RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10031
         (218 letters)



>d1r4qa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae,
           toxin I [TaxId: 622]}
          Length = 289

 Score = 25.7 bits (56), Expect = 4.8
 Identities = 7/87 (8%), Positives = 20/87 (22%), Gaps = 21/87 (24%)

Query: 122 INKLRERARRKRVVKDFQLIP----------KFFNAQL------NPETKTVKRKFNKDDS 165
           +N +R                            F   +            ++    ++  
Sbjct: 17  LNVIRSAIGTPLQTISSGGTSLLMIDSGTGDNLFAVDVRGIDPEEGRFNNLRLIVERN-- 74

Query: 166 PENGAVVNVLDFGSGGWWFKFKSKSSH 192
             N  V   ++  +   +++F   S  
Sbjct: 75  --NLYVTGFVN-RTNNVFYRFADFSHV 98


>d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA
          {Bacillus subtilis [TaxId: 1423]}
          Length = 274

 Score = 25.5 bits (56), Expect = 5.8
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 20 YISRFLEGTIGKVTWEDVLKNN 41
          Y+S  +EG  G      V    
Sbjct: 4  YMSVDMEGISGLPDDTFVDSGK 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 826,148
Number of extensions: 38163
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 10
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)