BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10034
(399 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26638|SYSC_MOUSE Serine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Sars PE=2 SV=3
Length = 512
Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust.
Identities = 254/501 (50%), Positives = 311/501 (62%), Gaps = 109/501 (21%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNK----- 55
MVLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D +WR+ R +ADN NK
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 56 --------------------------FKNLCSKVI-----------------------GE 66
F +L + + GE
Sbjct: 61 SKTIGEKMKKKEAVGDDESVPENVLNFDDLTADALAALKVSQIKKVRLLIDEAIQKCDGE 120
Query: 67 KMKAKEPVGDSSTLPGNHLHPSVPVSNNED-ENGIVRTKGDTEVRKKYSHVDLITMIDGV 125
++K + ++ GN LHPSVP+SN+ED +N + R GD VRKKYSHVDL+ M+DG
Sbjct: 121 RVKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 126 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 185
+ E GA+VAG RGYFLKGP V L+ L+QYAL +GYTP+YTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 186 AQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLG 245
+QFDEELYKVIGKG + D + D+KYLIATSEQPI A+HRD WL LPI+Y G
Sbjct: 241 SQFDEELYKVIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAG 296
Query: 246 VSTCFRQ---------------------------------------------EDLTKS-- 258
+STCFRQ E+ +S
Sbjct: 297 LSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMIATAEEFYQSLG 356
Query: 259 IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKM 318
I Y +VNIVSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTKKM
Sbjct: 357 IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKM 416
Query: 319 NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT 378
+K+EFVHMLNAT CATTR ICAILE +Q E G+ +P+ LR+F+P + E IPFVK
Sbjct: 417 MDKVEFVHMLNATMCATTRTICAILENYQAEKGIAVPEKLREFMPP-GLQEL--IPFVKP 473
Query: 379 APIDEEETKKQKKQKEGMKKK 399
APID+E +KKQKKQ EG KKK
Sbjct: 474 APIDQEPSKKQKKQHEGSKKK 494
>sp|Q6P799|SYSC_RAT Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Sars PE=1
SV=3
Length = 512
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 257/502 (51%), Positives = 312/502 (62%), Gaps = 111/502 (22%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNK----- 55
MVLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D +WR+ R +ADN NK
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 56 --------------------------FKNLCSKVI-----------------------GE 66
F +L + + GE
Sbjct: 61 SKTIGEKMKKKEPVGEDESIPEDVLNFDDLTADTLAALKVSQIKKVRLLVDEAIQKCDGE 120
Query: 67 KMKAKEPVGDSSTLPGNHLHPSVPVSNNED-ENGIVRTKGDTEVRKKYSHVDLITMIDGV 125
++K + ++ GN LHPSVP+SN+ED +N + R GD VRKKYSHVDL+ M+DG
Sbjct: 121 RVKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 126 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 185
+ E GA+VAG RGYFLKG V L+ L+QYAL +GYTP+YTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 186 AQFDEELYKVIGKG-EKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYL 244
+QFDEELYKVIGKG EK DS+ D+KYLIATSEQPI A+HRD WL LPI+Y
Sbjct: 241 SQFDEELYKVIGKGSEKSDDSS-----YDEKYLIATSEQPIAALHRDEWLRPEDLPIKYA 295
Query: 245 GVSTCFRQ---------------------------------------------EDLTKS- 258
G STCFRQ E+ +S
Sbjct: 296 GFSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMITTAEEFYQSL 355
Query: 259 -IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKK 317
I Y +VNIVSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTKK
Sbjct: 356 GIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKK 415
Query: 318 MNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVK 377
M +K+EFVHMLNAT CATTR ICAILE +QTE G+ +P+ LR+F+P + E IPFVK
Sbjct: 416 MMDKVEFVHMLNATMCATTRTICAILENYQTEKGIVVPEKLREFMPP-GLQEL--IPFVK 472
Query: 378 TAPIDEEETKKQKKQKEGMKKK 399
APID+E +KKQKKQ EG KKK
Sbjct: 473 PAPIDQEPSKKQKKQHEGSKKK 494
>sp|Q4R4U9|SYSC_MACFA Serine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=SARS
PE=2 SV=3
Length = 514
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 250/501 (49%), Positives = 308/501 (61%), Gaps = 109/501 (21%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKAD--------- 51
MVLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D +WR+ R +AD
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 52 ----------------------NFNKFKNLCSKVIG-----------------------E 66
N F +L + + E
Sbjct: 61 SKTIGEKMKKKEPVEDDESVPENVLNFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120
Query: 67 KMKAKEPVGDSSTLPGNHLHPSVPVSNNED-ENGIVRTKGDTEVRKKYSHVDLITMIDGV 125
++K + ++ GN LHPSVP+SN+ED +N + R GD VRKKYSHVDL+ M+DG
Sbjct: 121 RIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 126 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 185
+ E GA+VAG RGYFLKG V L+ L+QYAL +GYTP+YTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 186 AQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLG 245
+QFDEELYKVIGKG + D + D+KYLIATSEQPI A+HRD WL LPI+Y G
Sbjct: 241 SQFDEELYKVIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAG 296
Query: 246 VSTCFRQ---------------------------------------------EDLTKS-- 258
+STCFRQ E+ +S
Sbjct: 297 LSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLG 356
Query: 259 IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKM 318
I Y +VNIVSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTKKM
Sbjct: 357 IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKM 416
Query: 319 NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT 378
+K+EFVHMLNAT CATTR ICAILE +QTE G+ +P+ L++F+P + E IPFVK
Sbjct: 417 MDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPP-GLQEL--IPFVKP 473
Query: 379 APIDEEETKKQKKQKEGMKKK 399
APID+E +KKQKKQ EG KKK
Sbjct: 474 APIDQEPSKKQKKQHEGSKKK 494
>sp|P49591|SYSC_HUMAN Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3
Length = 514
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 248/501 (49%), Positives = 307/501 (61%), Gaps = 109/501 (21%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKAD--------- 51
MVLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D +WR+ R +AD
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 52 ----------------------NFNKFKNLCSKVIG-----------------------E 66
N F +L + + E
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120
Query: 67 KMKAKEPVGDSSTLPGNHLHPSVPVSNNED-ENGIVRTKGDTEVRKKYSHVDLITMIDGV 125
++K + ++ GN LHPSVP+SN+ED +N + R GD VRKKYSHVDL+ M+DG
Sbjct: 121 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 126 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 185
+ E GA+VAG RGYFLKG V L+ L+QYAL +GY P+YTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
Query: 186 AQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLG 245
+QFDEELYKVIGKG + D + D+KYLIATSEQPI A+HRD WL LPI+Y G
Sbjct: 241 SQFDEELYKVIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAG 296
Query: 246 VSTCFRQ---------------------------------------------EDLTKS-- 258
+STCFRQ E+ +S
Sbjct: 297 LSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLG 356
Query: 259 IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKM 318
I Y +VNIVSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTKKM
Sbjct: 357 IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKM 416
Query: 319 NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT 378
+K+EFVHMLNAT CATTR ICAILE +QTE G+ +P+ L++F+P + E IPFVK
Sbjct: 417 MDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPP-GLQEL--IPFVKP 473
Query: 379 APIDEEETKKQKKQKEGMKKK 399
API++E +KKQKKQ EG KKK
Sbjct: 474 APIEQEPSKKQKKQHEGSKKK 494
>sp|Q5R9K9|SYSC_PONAB Serine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=SARS PE=2 SV=3
Length = 514
Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/501 (49%), Positives = 307/501 (61%), Gaps = 109/501 (21%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKA---------- 50
MVLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D +WR+ R +A
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 51 ---------------------DNFNKFKNLCSKVIG-----------------------E 66
+N F +L + + E
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120
Query: 67 KMKAKEPVGDSSTLPGNHLHPSVPVSNNED-ENGIVRTKGDTEVRKKYSHVDLITMIDGV 125
++K + ++ GN LHPSVP+SN+ED +N + R GD VRKKYSHVDL+ M+DG
Sbjct: 121 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 126 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 185
+ E GA+VAG RGYFLKG V L+ L+QYAL +GY P+YTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
Query: 186 AQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLG 245
+QFDEELYKVIGKG + D + D+KYLIATSEQPI A+HRD WL LPI+Y G
Sbjct: 241 SQFDEELYKVIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAG 296
Query: 246 VSTCFRQ---------------------------------------------EDLTKS-- 258
+STCFRQ E+ +S
Sbjct: 297 LSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLG 356
Query: 259 IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKM 318
I Y +VNIVSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTKKM
Sbjct: 357 IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKM 416
Query: 319 NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT 378
+K+EFVHMLNAT CATTR ICAILE +QTE G+ +P+ L++F+P + E IPFVK
Sbjct: 417 MDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPP-GLQEL--IPFVKP 473
Query: 379 APIDEEETKKQKKQKEGMKKK 399
API++E +KKQKKQ EG KKK
Sbjct: 474 APIEQEPSKKQKKQHEGSKKK 494
>sp|Q9GMB8|SYSC_BOVIN Serine--tRNA ligase, cytoplasmic OS=Bos taurus GN=SARS PE=2 SV=3
Length = 514
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/501 (49%), Positives = 306/501 (61%), Gaps = 109/501 (21%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRH------------ 48
MVLDLDLFR +KGGDP +R++Q+ RFK+ LVD++++ D +WR+ R
Sbjct: 1 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 49 --------------------------------------KADNFNKFKNLCSKVI----GE 66
K K + L + I E
Sbjct: 61 SKTIGEKMKKKEPVGNDESIPEDVLNLDDLTADTLTNLKVSQIKKVRLLVDEAILKCDAE 120
Query: 67 KMKAKEPVGDSSTLPGNHLHPSVPVSNNED-ENGIVRTKGDTEVRKKYSHVDLITMIDGV 125
++K + +S GN LHPSVP+S++ED +N + R GD VRKKYSHVDL+ M+DG
Sbjct: 121 RIKLEAERFESLREIGNLLHPSVPISDDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 126 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 185
+ E GA+VAG RGYFLKG V L+ L+Q+AL +GYTP+YTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQFALRTLASRGYTPIYTPFFMRKEVMQEVAQL 240
Query: 186 AQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLG 245
+QFDEELYKVIGKG + D + ++KYLIATSEQPI A+HRD WL LPI+Y G
Sbjct: 241 SQFDEELYKVIGKGSEKSDD----NSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAG 296
Query: 246 VSTCFRQ---------------------------------------------EDLTKS-- 258
+STCFRQ E+ +S
Sbjct: 297 LSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIATAEEFYQSLG 356
Query: 259 IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKM 318
I Y +VNIVSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTKKM
Sbjct: 357 IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKM 416
Query: 319 NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT 378
+K+EFVHMLNAT CATTR ICAILE +QTE G+ +P+ L++F+P + E IPFVK
Sbjct: 417 MDKVEFVHMLNATMCATTRTICAILENYQTEKGILVPEKLKEFMPP-GLQEL--IPFVKA 473
Query: 379 APIDEEETKKQKKQKEGMKKK 399
APID+E +KKQKKQ EG KKK
Sbjct: 474 APIDQEPSKKQKKQHEGSKKK 494
>sp|Q18678|SYSC_CAEEL Probable serine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=srs-2 PE=3 SV=1
Length = 487
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/495 (46%), Positives = 284/495 (57%), Gaps = 111/495 (22%)
Query: 1 MVLDLDLFRTEKGGDP------------------------EKVRK-----NQKDRFKNV- 30
MVLD+D+FRTEKGG+P EK RK +Q +R KN
Sbjct: 1 MVLDIDMFRTEKGGNPEIIRKSQQDRFKDPKLVDEVIELDEKWRKERFVADQLNRQKNAI 60
Query: 31 -------------ELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDS 77
+ D + +D+ R K D ++ + K + + K +
Sbjct: 61 SKAIGEKMKKKEPQGTDDSVADDIVARLAELKIDELSQLTVVQLKKLRVLVDEKSVQTAA 120
Query: 78 STLP------------GNHLHPSVPVSNNEDENGIVRTKGDTEVRKKYSHVDLITMIDGV 125
+ + GN +H SV VS +E N I RT GD +KKYSHVDL+ M+DG
Sbjct: 121 AVIANENARHEKLIQIGNLIHSSVVVSKDEANNKIERTFGDLSTKKKYSHVDLVVMVDGF 180
Query: 126 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 185
D E G +VAGGRGYFLKGP V L+ ++Q AL + KGY PLYTPFFMRKEVMQEVAQL
Sbjct: 181 DGERGTVVAGGRGYFLKGPLVFLEQAIIQLALQRLNVKGYVPLYTPFFMRKEVMQEVAQL 240
Query: 186 AQFDEELYKVIGKGEKV-GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYL 244
+QFD+ELYKV KG ++ GD++ +D+KYLIATSEQPI A HR+ W+ E LPI+Y
Sbjct: 241 SQFDDELYKVSSKGSEIAGDTS-----VDEKYLIATSEQPIAAYHRNEWIKETELPIKYA 295
Query: 245 GVSTCFRQEDLTK----------------------------------------------- 257
GVSTCFRQE +
Sbjct: 296 GVSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVLCSPNDNESWTLFDEMIGNAESYYQEL 355
Query: 258 SIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKK 317
I Y+VVNIVSG LN+AAAKK DLEAWFPGSGA+RELVSCSNCLDYQSRRL VRYGQTKK
Sbjct: 356 QIPYQVVNIVSGELNNAAAKKFDLEAWFPGSGAYRELVSCSNCLDYQSRRLKVRYGQTKK 415
Query: 318 MNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVK 377
++ ++ FVHMLNAT CATTRVICAILE +QTE G+ +P +++++P Y IPFVK
Sbjct: 416 LSGEVPFVHMLNATMCATTRVICAILENNQTEEGINVPTAIQQWMPENY---RTFIPFVK 472
Query: 378 TAPIDEEETKKQKKQ 392
APIDE+ K K+
Sbjct: 473 PAPIDEDAKKATGKK 487
>sp|Q39230|SYS_ARATH Serine--tRNA ligase OS=Arabidopsis thaliana GN=At5g27470 PE=2 SV=1
Length = 451
Score = 320 bits (819), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 180/440 (40%), Positives = 248/440 (56%), Gaps = 92/440 (20%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD++LFR EKG +PE +R++Q+ RF +VE+VD++I+ D +WRQ + + D+F K N +
Sbjct: 1 MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLN 60
Query: 62 KVIGEKMKAKEPVG-----------DSSTLP-----------------GNHLHPSVPVSN 93
K + + KE DS+ GN +H SVPV
Sbjct: 61 KQVAQLKIKKEDASEIIQQTEKNKQDSTAKEAEVREAYAALKAKLEQVGNLVHDSVPVDK 120
Query: 94 NEDENGIVRTKGD----TEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQ 149
+E N +++ G+ T K +HVDL+ ++ D++ GA +AG RG+FLKG + L
Sbjct: 121 DEANNLVIKLWGEKRFSTPGLKLKNHVDLVELLGIADTKRGAEIAGARGFFLKGDGLMLN 180
Query: 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEK 209
L+ + L+ ++G+T L PFFMRK+VM + AQLAQFDEELYKV G+G
Sbjct: 181 QALINFGLTFLKKRGFTGLQPPFFMRKDVMAKCAQLAQFDEELYKVTGEG---------- 230
Query: 210 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE---------------- 253
DDKYLIAT+EQP+CA H D W+ LP+RY G S+CFR+E
Sbjct: 231 ---DDKYLIATAEQPLCAYHIDEWIHPTELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQ 287
Query: 254 ----------------------DLTKS---------IAYRVVNIVSGALNHAAAKKLDLE 282
++ K+ + Y++V+IVSGALN AAAKK DLE
Sbjct: 288 FEKIEQFCITGPNENASWEMLDEMMKNSEDFYQALKLPYQIVSIVSGALNDAAAKKYDLE 347
Query: 283 AWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAI 342
AWFP S FRELVSCSNC DYQ+RRL +RYGQ K + ++VHMLN+T AT R IC I
Sbjct: 348 AWFPSSETFRELVSCSNCTDYQARRLEIRYGQKKSNEQTKQYVHMLNSTLTATERTICCI 407
Query: 343 LETHQTETGVRIPDCLRKFV 362
LE +Q E GV IP+ L+ F+
Sbjct: 408 LENYQREDGVDIPEVLQPFM 427
>sp|O81983|SYS_HELAN Serine--tRNA ligase OS=Helianthus annuus PE=2 SV=1
Length = 438
Score = 319 bits (818), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 185/440 (42%), Positives = 248/440 (56%), Gaps = 95/440 (21%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD++LFR EKGG+PE VR++Q+ R +VE+VD++I+ D +WRQ + + + K N +
Sbjct: 1 MLDINLFREEKGGNPEIVRESQRRRGASVEIVDEIIKLDKEWRQRQFELEQLRKDFNRIN 60
Query: 62 KVIGEKMKAKEPVGDSSTL-------------------------------PGNHLHPSVP 90
K + K + GD+S+L GN +H SVP
Sbjct: 61 KEVA---KLRISGGDASSLIKNTEENKDSTAKKQAEVQEARTALYSKLETVGNLVHDSVP 117
Query: 91 VSNNEDENGIVRTKGDT-EVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQ 149
VSN+E +N +VRT G+ E +HV+L+ ++ D + GA VAGGRGY+LKG V L
Sbjct: 118 VSNDEADNAVVRTWGERREETNLKNHVELVELLGIADLKKGANVAGGRGYYLKGDGVRLN 177
Query: 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEK 209
L+ + L ++ YT L TPFFMRK++M + AQLAQFDEELYKV G+G
Sbjct: 178 QALINFGLDFLEKRKYTALQTPFFMRKDIMGKCAQLAQFDEELYKVTGEG---------- 227
Query: 210 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED--------------- 254
DDKYLIAT+EQP+CA H D W+ LP+RY G S+CFR+E
Sbjct: 228 ---DDKYLIATAEQPLCAYHIDDWIHPNELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQ 284
Query: 255 --------LTK------------------------SIAYRVVNIVSGALNHAAAKKLDLE 282
LTK + Y+VV+IVSGALN AAAKK DLE
Sbjct: 285 FEKVEQFCLTKPSGNDSWEMHEEMIKNSEEFYQMLKLPYQVVSIVSGALNDAAAKKYDLE 344
Query: 283 AWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAI 342
AWFP S +RELVSCSNC DYQSR+L +R GQ K + ++ H+LN+T AT R +C I
Sbjct: 345 AWFPASKTYRELVSCSNCTDYQSRKLEIRCGQKKGNEQAKQYCHLLNSTLTATERTLCCI 404
Query: 343 LETHQTETGVRIPDCLRKFV 362
LE +QTE GV IP+ L+ F+
Sbjct: 405 LENYQTEKGVAIPEVLQPFM 424
>sp|Q7KWQ2|SYSC_DICDI Serine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=serS PE=1 SV=1
Length = 451
Score = 318 bits (815), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 187/454 (41%), Positives = 250/454 (55%), Gaps = 93/454 (20%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
M LD+ LFR +KGG+P+ +R++QK R+ NV+ V +VI+ D ++ +++ DN N
Sbjct: 1 MGLDIVLFRADKGGNPDLIRQSQKVRYANVDAVQEVIDLDKVVKETKYRLDNTNAEYAKL 60
Query: 61 SKVIGEKMKAKEP----VGDSSTLP------------------------GNHLHPSVPVS 92
+K + K KA E + + L GN +H SVP+
Sbjct: 61 NKSVAMKKKAGESADEIIAQAEELNQSIIKLKAEVSEVELLLRKKLRPIGNIVHESVPID 120
Query: 93 NNEDENGIVRTKGDTEVRKKY-SHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVG 151
NNED N I++T G+ + + H +L+ MIDG D E G +V+G R YFLKG V L
Sbjct: 121 NNEDNNQIIKTWGECKTSEGLLHHHELLEMIDGYDPERGTLVSGHRCYFLKGIGVLLNQA 180
Query: 152 LVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDE 211
++ +AL ++G PL TPFFM K+VM + AQL QFD+ELYKV G E
Sbjct: 181 IINFALMHMTKRGSVPLQTPFFMNKDVMAKTAQLEQFDDELYKVTGDNE----------- 229
Query: 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE------------------ 253
+KYLIATSEQPI A H+D W+ E LP +Y+G STCFR+E
Sbjct: 230 --EKYLIATSEQPISAFHQDEWIEEKDLPKKYVGYSTCFRKEAGSHGRDTWGIFRVHQFE 287
Query: 254 --------------DLTK-------------SIAYRVVNIVSGALNHAAAKKLDLEAWFP 286
D+ + I YRVVNIVSGALN+AA+KK DLE WFP
Sbjct: 288 KIEQFCITEPEKSWDMMEEMINNSEQFYQELGIPYRVVNIVSGALNNAASKKYDLEGWFP 347
Query: 287 GSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETH 346
G +RELVSCSNC DYQSR L +R G K+ ++ ++VHMLN+T ATTRVIC ILE +
Sbjct: 348 GYNQYRELVSCSNCTDYQSRDLEIRCGMKKQGQQQKKYVHMLNSTLAATTRVICCILENY 407
Query: 347 QTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAP 380
QTE G+ +P LR ++ + IPFVK AP
Sbjct: 408 QTEGGITVPVPLRPYLGKDF------IPFVKAAP 435
>sp|O14018|SYSC_SCHPO Serine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC29A4.15 PE=3 SV=1
Length = 450
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 187/461 (40%), Positives = 243/461 (52%), Gaps = 103/461 (22%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD++LF+ EKGG+PE +R++Q+ R +V +VDKVIE +W R + DN NK N
Sbjct: 1 MLDINLFQVEKGGNPEIIRESQRKRGADVGVVDKVIEMYKEWVSLRFELDNTNKSINRVQ 60
Query: 62 KVIGEKMKAKEPVGDSSTL-------------------------------PGNHLHPSVP 90
K IG KMKAKE D+S L GN +H SVP
Sbjct: 61 KEIGLKMKAKE---DASELLEEKNSLTERKKNLIEQETAKNKEMLNVVSSIGNIVHDSVP 117
Query: 91 VSNNEDENGIVRT---KGDT-EVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAV 146
VS +ED N I+R +G T E + SH +++T +DG D E G V+G RGYFL+ V
Sbjct: 118 VSMDEDNNEIIRKWAPEGVTVEKKNCLSHHEVLTRLDGYDPERGVKVSGHRGYFLRQYGV 177
Query: 147 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSA 206
+ L+QY L ++GY L P + K+VM + AQL QFDEELYKVI GD
Sbjct: 178 FFNLALIQYGLDFLEKRGYIALQAPTMLNKDVMAKTAQLEQFDEELYKVID-----GD-- 230
Query: 207 PEKDELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQ------------ 252
+++YLIATSEQPI A H W P LP++Y G STC+R+
Sbjct: 231 ------EERYLIATSEQPISAYHSGEWFEKPSEQLPLKYAGYSTCYRREAGSHGRDAWGI 284
Query: 253 -------------------------------EDLTKS--IAYRVVNIVSGALNHAAAKKL 279
ED KS + YR+V IVSGALN+AAAKK
Sbjct: 285 FRVHAFEKIEQFVLTDPEKSWEAFTEMINHAEDFYKSLELPYRIVAIVSGALNNAAAKKY 344
Query: 280 DLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVI 339
DLEAWFP G ++ELVSCSNC DYQSR L +R G K + + ++VH LN+T CAT R +
Sbjct: 345 DLEAWFPFQGEYKELVSCSNCTDYQSRNLEIRCGVKKMGDREKKYVHCLNSTLCATERAL 404
Query: 340 CAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAP 380
C ILE +QT GV +P L+ Y+ +PF K P
Sbjct: 405 CCILENYQTPDGVNVPKVLQP-----YMGGKTFLPFTKELP 440
>sp|Q9HGT6|SYSC_CANAL Serine--tRNA ligase, cytoplasmic OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=SES1 PE=1 SV=1
Length = 462
Score = 296 bits (757), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 238/476 (50%), Gaps = 104/476 (21%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD++ F EKGGDPE ++ +QK R +VELVD++I +W + R D NK N
Sbjct: 1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60
Query: 62 KVIGEKMKAKEPVGD----------------------------SSTLPGNHLHPSVPVSN 93
K IG++ KAKE D GN +H SV S
Sbjct: 61 KEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQ 120
Query: 94 NEDENGIVRTKGDTEVRK------------KYSHVDLITMIDGVDSEAGAIVAGGRGYFL 141
+E+ N +VRT +K K SH +++ +DG D E G + G RGYFL
Sbjct: 121 DEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLRLDGYDPERGVRIVGHRGYFL 180
Query: 142 KGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEK 201
+ V L L+ Y LS KGY PL P M KEVM + AQL+QFDEELYKVI
Sbjct: 181 RNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVI----- 235
Query: 202 VGDSAPEKDELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQED----- 254
D D+KYLIATSEQPI A H W P LP+RY G S+CFR+E
Sbjct: 236 --------DGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGK 287
Query: 255 ------------------LTK----------------------SIAYRVVNIVSGALNHA 274
LT+ + YRVV IVSG LN+A
Sbjct: 288 DAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNA 347
Query: 275 AAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACA 334
AAKK DLEAWFP ++ELVSCSNC DYQSR L +R G ++ ++ ++VH LN+T A
Sbjct: 348 AAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSA 407
Query: 335 TTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQK 390
T R IC ILE +Q E G+ IP+ LRK++P E IP++K P + KK K
Sbjct: 408 TERTICCILENYQKEDGLVIPEVLRKYIPG----EPEFIPYIKELPKNTTSVKKAK 459
>sp|P07284|SYSC_YEAST Serine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SES1 PE=1 SV=2
Length = 462
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 178/469 (37%), Positives = 237/469 (50%), Gaps = 110/469 (23%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD++ F +KGG+PE +R++QK R +VE+VD++I + W + R + D NK N
Sbjct: 1 MLDINQFIEDKGGNPELIRQSQKARNASVEIVDEIISDYKDWVKTRFELDELNKKFNKLQ 60
Query: 62 KVIGEKMKAKEPVGDSSTL-------------------------------PGNHLHPSVP 90
K IG K K KE D+S L GN +HPSV
Sbjct: 61 KDIGLKFKNKE---DASGLLAEKEKLTQQKKELTEKEQQEDKDLKKKVFQVGNIVHPSVV 117
Query: 91 VSNNEDENGIVRTKGDTEVRK------------KYSHVDLITMIDGVDSEAGAIVAGGRG 138
VSN+E+ N +VRT ++ SH +++ +DG D + G + G RG
Sbjct: 118 VSNDEENNELVRTWKPEDLEAVGPIASVTGKPASLSHHEILLRLDGYDPDRGVKICGHRG 177
Query: 139 YFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGK 198
YF + V L L+ Y L KGY PL P M KE+M + AQL++FDEELYKVI
Sbjct: 178 YFFRNYGVFLNQALINYGLQFLAAKGYIPLQAPVMMNKELMSKTAQLSEFDEELYKVI-- 235
Query: 199 GEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQ---- 252
D D+KYLIATSEQPI A H W P+ LPI Y+G S+CFR+
Sbjct: 236 -----------DGEDEKYLIATSEQPISAYHSGEWFEKPQEQLPIHYVGYSSCFRREAGS 284
Query: 253 ---------------------------------------EDLTKS--IAYRVVNIVSGAL 271
E+ KS + YR+V IVSG L
Sbjct: 285 HGKDAWGVFRVHAFEKIEQFVITEPEKSWEEFEKMISYSEEFYKSLKLPYRIVGIVSGEL 344
Query: 272 NHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNAT 331
N+AAAKK DLEAWFP ++ELVSCSNC DYQSR L +R G K + + ++VH LN+T
Sbjct: 345 NNAAAKKYDLEAWFPYQKEYKELVSCSNCTDYQSRNLEIRCGIKKMGDREKKYVHCLNST 404
Query: 332 ACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAP 380
AT R +C ILE +QTE G+ +P+ LRK++P E +PFV P
Sbjct: 405 LAATQRALCCILENYQTEDGLVVPEVLRKYIPG----EPEFLPFVNELP 449
>sp|Q2NEU9|SYS_METST Serine--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=serS PE=3 SV=1
Length = 424
Score = 268 bits (684), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 164/444 (36%), Positives = 236/444 (53%), Gaps = 96/444 (21%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD+ LFR E P K+ ++K RF++ V+KVIE D WR+ +N KN S
Sbjct: 1 MLDIKLFREE----PNKIFDSEKKRFRDTINVEKVIEYDNLWREGLQNLNNLRSEKNKLS 56
Query: 62 KVIGEK----------MKAKEPVGDSSTLP-----------------GNHLHPSVPVSNN 94
K + K+K+ D L GN + +VPVS+
Sbjct: 57 KSFKQAKKDGNLEEVISKSKKVASDIKELEPKIEEYERIRDEYRYKVGNIIDENVPVSDT 116
Query: 95 EDENGIVRTKGD--TEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGL 152
ED+N ++RT GD + + +HVDLI +IDG D++ + +AG R Y+LK + L + L
Sbjct: 117 EDDNEVIRTNGDFPSFDFEPLNHVDLINLIDGADTDTASQIAGSRFYYLKQDILFLNLAL 176
Query: 153 VQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDEL 212
+Q+AL++ +KGYTPL TPFF++ EV +E ++L +F+E LYKV E
Sbjct: 177 IQFALNELKDKGYTPLQTPFFIKSEVAEETSELGEFEETLYKV---------------EN 221
Query: 213 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE------------------- 253
+D YLIAT+EQ + A+HR+ + LP+RY +STCFR+E
Sbjct: 222 EDLYLIATAEQTLAALHRNEIIDSEDLPLRYCALSTCFRKEAGSHGKDTLGIFRVHQFEK 281
Query: 254 --------------------DLTKSI------AYRVVNIVSGALNHAAAKKLDLEAWFPG 287
++T+ I Y++V IVS ALN AA K DLEAWFPG
Sbjct: 282 VEQFIYATPENSTLEHEKLLEVTEGIYQKLGLPYQIVAIVSSALNDNAAIKYDLEAWFPG 341
Query: 288 SGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQ 347
SG +RELVSC+NC DYQ+R++ RYG+ + +I +H LN+TA AT R IC ILE +Q
Sbjct: 342 SGTYRELVSCTNCKDYQARKINTRYGKAGAGDAQI--LHTLNSTAIATERTICCILENYQ 399
Query: 348 TETG-VRIPDCLRKFVPAVYVNEA 370
E G ++IPD L ++ + EA
Sbjct: 400 QEDGSIKIPDVLIPYMNGKTIIEA 423
>sp|Q8SS48|SYS_ENCCU Serine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU04_0750 PE=1 SV=1
Length = 429
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 211/438 (48%), Gaps = 97/438 (22%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++D++L R K EKV +++K RF++ V K E D K + + D N N +
Sbjct: 1 MIDINLIRDPK--TREKVVESEKKRFRDGLAVGKAYELDRKRIEMNFRLDQINTRINQLN 58
Query: 62 KVI--GEKMKAKEPVGDSSTLP-------------------------------GNHLHPS 88
+ I G + + GD S GN + PS
Sbjct: 59 REIKSGYRQGKNKEDGDLSEKVAEIKGLSDEAKGLRDDVKAVEDELNKVMKGIGNIISPS 118
Query: 89 VPVSNNEDENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCL 148
V VSN+E +N IVR+ + +K + M D S AGA V G RGY+L G L
Sbjct: 119 VVVSNDEKDNPIVRSYRSSRNMQKNPRPFCVLMKDFTHSVAGAKVMGHRGYYLSGKMARL 178
Query: 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPE 208
L +YA+ KGYT + TP +R++VM++ +QL+ FD++LYKV
Sbjct: 179 AQALTRYAIDFLENKGYTYIQTPVMLRRDVMRKTSQLSDFDDQLYKV------------- 225
Query: 209 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE--------------- 253
DD YLIATSEQ + A++ D + +P ++ G S CFR+E
Sbjct: 226 ---EDDLYLIATSEQSLAALYMDERMVPQEVPKKFCGQSLCFRKEAGAHGKDNAGLFRVH 282
Query: 254 ---------------------DLTKS---------IAYRVVNIVSGALNHAAAKKLDLEA 283
++ K+ I+Y VV IVSG LN AAA K DLEA
Sbjct: 283 QFEKIEQFVICGPEESQKYHEEMIKACEEFYQSLDISYNVVGIVSGELNDAAAIKYDLEA 342
Query: 284 WFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAIL 343
+FP + +RELVSCSNC DYQSR L +RYG K+ N KI +VH+LN T CA R +C I+
Sbjct: 343 YFPSAEKYRELVSCSNCTDYQSRELEIRYGVVKENNRKI-YVHLLNGTMCAVQRALCCIV 401
Query: 344 ETHQTETGVRIPDCLRKF 361
E +QT G+ IPD L+ +
Sbjct: 402 ENYQTGDGIAIPDVLQGY 419
>sp|C5A226|SYS_THEGJ Serine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM 15229
/ JCM 11827 / EJ3) GN=serS PE=3 SV=1
Length = 455
Score = 218 bits (555), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 149/459 (32%), Positives = 218/459 (47%), Gaps = 121/459 (26%)
Query: 2 VLDLDLFRTEKGGDPEKVRKN--QKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD+ L R + PE V+K+ ++ + V+ +D+++E D KWR+ K + K +N
Sbjct: 1 MLDIKLIREK----PELVKKDLIKRGETEKVKWIDEILELDRKWRENLKKINQLRKERNQ 56
Query: 60 CSKVIGEKMKAKEPVGDSST-----------------------------LPGNHLHPSVP 90
+ IG++ KA EP+ D LP N H SVP
Sbjct: 57 LAVQIGKRKKAGEPIEDLLARSNEIVKQIEELEKEVEALKKKIDYYLWRLP-NITHESVP 115
Query: 91 VSNNEDENGIVRTKGDTEVRKKYS----------------------HVDLITMIDGVDSE 128
V ++ EN +R G +V + + HVD++ ++ G D E
Sbjct: 116 VGKDDTENVPIRFWGKAKVWEGFLESFKEQSLGKMDYEVLSWRPRLHVDMLELLRGADLE 175
Query: 129 AGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF 188
A V+G R Y+L V L + L+++AL + IEKG+TP+ P+ +R+ V + F
Sbjct: 176 RAAKVSGSRFYYLLNELVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGATTFEDF 235
Query: 189 DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST 248
++ +YKV G +D YLI T+E P+ +H + L LP+ Y+GVS
Sbjct: 236 EDVIYKVEG---------------EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSP 280
Query: 249 CFRQEDLTKS---------------------------------------------IAYRV 263
CFR+E T I YRV
Sbjct: 281 CFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIANAEELFQELEIPYRV 340
Query: 264 VNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIE 323
VNI +G L + AAKK D+EAW G G FRE+VS SNC D+Q+RRL +R+ K +EK +
Sbjct: 341 VNICTGDLGYVAAKKYDIEAWMAGQGKFREVVSASNCTDWQARRLNIRF--RDKTHEKPK 398
Query: 324 FVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKF 361
FVH LN+TA AT+R I AILE HQTE G V++P L K+
Sbjct: 399 FVHTLNSTAIATSRAIVAILENHQTEEGVVKLPKALWKY 437
>sp|B6YWW5|SYS_THEON Serine--tRNA ligase OS=Thermococcus onnurineus (strain NA1) GN=serS
PE=3 SV=1
Length = 457
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/459 (31%), Positives = 217/459 (47%), Gaps = 121/459 (26%)
Query: 2 VLDLDLFRTEKGGDPEKVRKN--QKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD+ L R +P+ V+ + ++ + ++ +D+++E D KWR+ K + K +N
Sbjct: 1 MLDIKLIRE----NPDLVKGDLIKRGEIEKIKWIDEILELDKKWRENLRKINQLRKERNQ 56
Query: 60 CSKVIGEKMKAKEPVGDSST-----------------------------LPGNHLHPSVP 90
+ IG++ KA EP+ D LP N H SVP
Sbjct: 57 LAVQIGKRKKAGEPIDDLLAKSNEIVKQIETLEKEVEELRAKIDYYLWRLP-NITHESVP 115
Query: 91 VSNNEDENGIVRTKGDTEVRKKYS----------------------HVDLITMIDGVDSE 128
+ ++ EN +R G +V + + HVD++ ++ G D E
Sbjct: 116 IGKDDSENVPIRFWGKAKVWEGFLETFKEQSLGKMDYEVIDWRPRLHVDMLEILRGADIE 175
Query: 129 AGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF 188
A V+G R Y+L V L + L+++AL K IEKG+ P+ P+ +R+ V + V F
Sbjct: 176 RAAKVSGSRFYYLLNELVILDLALIRFALDKLIEKGFIPVIPPYMVRRYVEEGVTSFGDF 235
Query: 189 DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST 248
++ +YKV G +D YLI T+E P+ +H + L LP+ Y+G+S
Sbjct: 236 EDVIYKVEG---------------EDLYLIPTAEHPLAGMHANEILEGKDLPLLYVGISP 280
Query: 249 CFRQEDLTKS---------------------------------------------IAYRV 263
CFR+E T I YRV
Sbjct: 281 CFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKLIQNAEEIFQELEIPYRV 340
Query: 264 VNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIE 323
VNI +G L + AAKK D+EAW G G FRE+VS SNC ++Q+RRL +RY K +EK +
Sbjct: 341 VNICTGDLGYVAAKKYDIEAWMAGQGKFREVVSASNCTEWQARRLNIRY--RDKTHEKPK 398
Query: 324 FVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKF 361
FVH LN+TA AT+R I AILE HQTE G V++P L K+
Sbjct: 399 FVHTLNSTAIATSRAIVAILENHQTEEGVVKLPKVLWKY 437
>sp|Q5JE75|SYS_PYRKO Serine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=serS PE=3 SV=1
Length = 455
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 218/459 (47%), Gaps = 121/459 (26%)
Query: 2 VLDLDLFRTEKGGDPEKVRKN--QKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD+ L R +PE V+++ ++ + ++ +D+++E D KWR+ K + K +N
Sbjct: 1 MLDIKLIRE----NPEIVKRDLIKRGETEKLKWIDEILELDKKWRENLKKINQLRKERNQ 56
Query: 60 CSKVIGEKMKAKEPVGDS-----------------------------STLPGNHLHPSVP 90
+ IG++ KA EP+ D LP N H SVP
Sbjct: 57 LAVQIGKRKKAGEPIDDLLKRSNEIVKQIEELEKENEELKKKIDYYLWRLP-NITHESVP 115
Query: 91 VSNNEDENGIVRTKGDTEVRKKYS----------------------HVDLITMIDGVDSE 128
V ++++N +R G +V + + HVD++ ++ G D E
Sbjct: 116 VGESDEDNVPIRFWGKAKVWEGFLETFKEQSLGKMEYEVLSWRPRLHVDMLELLRGADLE 175
Query: 129 AGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF 188
A V+G R Y+L V L + L+++AL K IEKG+TP+ P+ +R+ V + F
Sbjct: 176 RAAKVSGARFYYLLNELVILDLALIRFALDKLIEKGFTPVIPPYMVRRFVEEGATTFDDF 235
Query: 189 DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST 248
++ +YKV G +D YLI T+E P+ +H + L LP+ Y+GVS
Sbjct: 236 EDVIYKVEG---------------EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSP 280
Query: 249 CFRQEDLTKS---------------------------------------------IAYRV 263
CFR+E T I YRV
Sbjct: 281 CFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHERIIANAEEIFQALEIPYRV 340
Query: 264 VNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIE 323
VNI +G L + AAKK D+EAW G G FRE+VS SNC D+Q+RRL +R+ K +EK
Sbjct: 341 VNICTGDLGYVAAKKYDIEAWMAGQGKFREVVSASNCTDWQARRLNIRF--RDKTHEKPR 398
Query: 324 FVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKF 361
FVH LN+TA AT+R I AILE HQTE G V++P L K+
Sbjct: 399 FVHTLNSTAIATSRAIVAILENHQTEEGVVKLPKALWKY 437
>sp|P26636|SYSC_CRIGR Serine--tRNA ligase, cytoplasmic (Fragment) OS=Cricetulus griseus
GN=SARS PE=2 SV=1
Length = 199
Score = 212 bits (539), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/141 (72%), Positives = 119/141 (84%), Gaps = 3/141 (2%)
Query: 259 IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKM 318
I Y +VNIVSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTKKM
Sbjct: 51 IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKM 110
Query: 319 NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT 378
+K+EFVHMLNAT CATTR ICAILE +QTE G+ +P+ LR+F+P + E IPFVK
Sbjct: 111 MDKVEFVHMLNATMCATTRTICAILENYQTEKGIIVPEKLREFMPPG-LQEL--IPFVKP 167
Query: 379 APIDEEETKKQKKQKEGMKKK 399
APID+E +KKQKKQ EG KK+
Sbjct: 168 APIDQEPSKKQKKQHEGSKKE 188
>sp|O58441|SYS_PYRHO Serine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=serS PE=1
SV=2
Length = 455
Score = 210 bits (535), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 146/459 (31%), Positives = 213/459 (46%), Gaps = 121/459 (26%)
Query: 2 VLDLDLFRTEKGGDPEKVRKN--QKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD+ L R +PE V+ + ++ + V+ VD++++ D +WR + + +N
Sbjct: 1 MLDIKLIRE----NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNK 56
Query: 60 CSKVIGEKMKAKEPVGDSST-----------------------------LPGNHLHPSVP 90
+ IG++ K EPV + LP N HPSVP
Sbjct: 57 IAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLP-NITHPSVP 115
Query: 91 VSNNEDENGIVRTKGDTEVRKKYS----------------------HVDLITMIDGVDSE 128
V +E++N +R G V K + HVDL+ ++ G D
Sbjct: 116 VGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFA 175
Query: 129 AGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF 188
A V+G R Y+L V L + L+++AL + IEKG+TP+ P+ +R+ V + F
Sbjct: 176 RAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDF 235
Query: 189 DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST 248
++ +YKV E +D YLI T+E P+ +H + L LP+ Y+GVS
Sbjct: 236 EDVIYKV---------------EDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSP 280
Query: 249 CFRQEDLTKS---------------------------------------------IAYRV 263
CFR+E T I YRV
Sbjct: 281 CFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRV 340
Query: 264 VNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIE 323
VNI +G L + AAKK D+EAW PG G FRE+VS SNC D+Q+RRL +R+ + +EK
Sbjct: 341 VNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRF--RDRTDEKPR 398
Query: 324 FVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKF 361
+VH LN+TA AT+R I AILE HQ E G VRIP L K+
Sbjct: 399 YVHTLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKY 437
>sp|Q8U1K2|SYS_PYRFU Serine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=serS PE=3 SV=1
Length = 455
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 145/459 (31%), Positives = 212/459 (46%), Gaps = 121/459 (26%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDR--FKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD++L R +PE V+ + K R + +D+++ D +WR+ + + +N
Sbjct: 1 MLDINLIRN----NPELVKNDLKKRGELDKIAWIDEILRLDEEWRKKLKEINRLRHERNK 56
Query: 60 CSKVIGEKMKAKEPVGDSST-----------------------------LPGNHLHPSVP 90
+ IG++ KA EPV D LP N HPSVP
Sbjct: 57 IAIEIGKRKKAGEPVEDLLAKSKEIVKRIEELEKEVEELRKRIDYYLWRLP-NITHPSVP 115
Query: 91 VSNNEDENGIVRTKGDTEVRKKYS----------------------HVDLITMIDGVDSE 128
V +E++N +R G +V K + HVDL+ ++ G D
Sbjct: 116 VGKDENDNVPIRFWGKAKVWKGHLESFLEQSQGKMEYEVLEWRPKLHVDLLEILGGADFA 175
Query: 129 AGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF 188
A V+G R Y+L V L + L+++AL + IEKG+TP+ P+ +R+ V + F
Sbjct: 176 RAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTTFEDF 235
Query: 189 DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST 248
++ +YKV G +D YLI T+E P+ +H + L LP+ Y+ S
Sbjct: 236 EDVIYKVEG---------------EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVAFSP 280
Query: 249 CFRQEDLTKS---------------------------------------------IAYRV 263
CFR+E T I YRV
Sbjct: 281 CFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHERLVRNAEELFQELEIPYRV 340
Query: 264 VNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIE 323
VNI +G L + AAKK D+EAW PG G FRE+VS SNC D+Q+RRL +R+ + +EK
Sbjct: 341 VNICTGDLGYVAAKKYDIEAWMPGQGRFREVVSASNCTDWQARRLNIRF--RDRTDEKPR 398
Query: 324 FVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKF 361
+VH LN+TA AT+R I AILE HQ E G V+IP L K+
Sbjct: 399 YVHTLNSTAIATSRAIVAILENHQQEDGTVKIPRALWKY 437
>sp|Q9UZ21|SYS_PYRAB Serine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=serS PE=3 SV=1
Length = 455
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 142/459 (30%), Positives = 214/459 (46%), Gaps = 121/459 (26%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDR--FKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD+ L R +PE V+ + K R + ++ +D++++ D +WR + + +N
Sbjct: 1 MLDIKLIRE----NPELVKNDLKKRGELEKIKWIDEILKLDAEWRAKLKEINKLRHERNK 56
Query: 60 CSKVIGEKMKAKEPVGDSST-----------------------------LPGNHLHPSVP 90
+ IG++ K EPV + LP N HPSVP
Sbjct: 57 IAIEIGKRRKKGEPVEELLAKSKEIVKRIESLEKEVEELKKKIDYYLWRLP-NITHPSVP 115
Query: 91 VSNNEDENGIVRTKGDTEV--------------RKKYS--------HVDLITMIDGVDSE 128
+ +E++N +R G V + +Y HVDL+ ++ G D
Sbjct: 116 IGESEEDNVPIRFWGKARVWEGHLERFLEQSQGKMEYEVLEWRPKLHVDLLEILGGADFA 175
Query: 129 AGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF 188
A V+G R Y+L V L + L+++AL + I+KG+TP+ P+ +R+ V + F
Sbjct: 176 RAAKVSGSRFYYLLNEIVILDLALIRFALDELIKKGFTPVIPPYMVRRFVEEGSTTFEDF 235
Query: 189 DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST 248
++ +YKV G +D YLI T+E P+ +H + L LP+ Y+G+S
Sbjct: 236 EDVIYKVEG---------------EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGISP 280
Query: 249 CFRQEDLTKS---------------------------------------------IAYRV 263
CFR+E T I YRV
Sbjct: 281 CFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHERIIRNAEELFQKLEIPYRV 340
Query: 264 VNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIE 323
VNI +G L + AAKK D+EAW PG G FRE+VS SNC D+Q+RRL +R+ + +EK
Sbjct: 341 VNICTGDLGYVAAKKYDIEAWMPGQGRFREVVSASNCTDWQARRLNIRF--RDRTDEKPR 398
Query: 324 FVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKF 361
+VH LN+TA AT+R I AILE HQ E G V+IP L K+
Sbjct: 399 YVHTLNSTAIATSRAIVAILENHQEEDGTVKIPKVLWKY 437
>sp|B1L5G0|SYS_KORCO Serine--tRNA ligase OS=Korarchaeum cryptofilum (strain OPF8)
GN=serS PE=3 SV=1
Length = 456
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 146/446 (32%), Positives = 210/446 (47%), Gaps = 119/446 (26%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVI-----GEK-- 67
DPE +R+N + RF ++++++ IE D KWR+ + ++ + +N ++ I GE+
Sbjct: 12 DPEILRENLRRRFLPLDMLERAIELDRKWREAVTELNSLRERRNEINRSIPRADPGEREE 71
Query: 68 --MKAKEPVGDS-------------------STLPGNHLHPSVPVSNNEDENGIVRTKGD 106
KAKE +G+ ++P + SVP+ NED N +R G
Sbjct: 72 LIRKAKE-IGEEIERLEDVLEKLSQERDSILMSMPA-LIDDSVPIGPNEDYNKPIRFWGK 129
Query: 107 TEVRK---------------KYSHVD---------LITMIDGVDSEAGAIVAGGRGYFLK 142
+V + +Y +D L M+ VD+ +AG R ++L
Sbjct: 130 PKVPRSKLDSFMEQTRGFNVEYELIDWEPLGHADELEVMLKQVDTVKAGQLAGSRFFYLF 189
Query: 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKV 202
V L+ L+ +AL K KG+ P+ P+ MR++ V L F++ +YKV G
Sbjct: 190 KDIVWLEQALILFALDKISRKGFIPVIPPYMMRRDYYLGVVDLNTFEDSIYKVEG----- 244
Query: 203 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE--------- 253
+D YLIATSE P+ A+H E LP Y+G+S CFR+E
Sbjct: 245 ----------EDLYLIATSEHPLVAMHAGDTFTEDELPRLYVGLSPCFRKEAGTHGKDTK 294
Query: 254 ------DLTK------------------------------SIAYRVVNIVSGALNHAAAK 277
TK I YR+VNI SG L +AAK
Sbjct: 295 GIFRVHQFTKVEQIVFSKPEESKYWHERLIENAEEIYRELEIPYRIVNIASGDLGASAAK 354
Query: 278 KLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTR 337
K DLE WFP G +RELVSCSNC+D+QS RL ++ + + EFVH LN+TA ATTR
Sbjct: 355 KYDLEGWFPAQGKYRELVSCSNCVDWQSYRLRIKLDRKGRR----EFVHTLNSTALATTR 410
Query: 338 VICAILETHQTETG-VRIPDCLRKFV 362
I AI+E HQ E G VRIP LRK++
Sbjct: 411 TISAIVENHQREDGSVRIPKALRKYL 436
>sp|C6A4A3|SYS_THESM Serine--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=serS PE=3 SV=1
Length = 455
Score = 201 bits (511), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 141/456 (30%), Positives = 210/456 (46%), Gaps = 121/456 (26%)
Query: 2 VLDLDLFRTEKGGDPEKVRKN--QKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
++D+ L R +P+ ++ + ++ + + +D+++E D KWR+ + +N + +N
Sbjct: 1 MIDIKLIRE----NPDLIKGDLIKRGELEKLRWIDEILELDKKWRENLKEINNLRRERNK 56
Query: 60 CSKVIGEKMKAKEPVGDS-----------------------------STLPGNHLHPSVP 90
+ IG++ K+ E + + LP N H SVP
Sbjct: 57 LAIEIGKRKKSGEAIDELIKKSDNIAKRIEEIEKENNIIREKIDYYLWRLP-NITHESVP 115
Query: 91 VSNNEDENGIVRTKGDTEV--------------RKKYS--------HVDLITMIDGVDSE 128
+ ++ EN +R G V + KY H DL+ I G D E
Sbjct: 116 IGKDDTENVPIRFWGKARVWEGHLETFLEQSQGKMKYETITWKPELHADLLPKIGGADLE 175
Query: 129 AGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF 188
A V+G R ++L V L + L+++AL K IEKG+ P+ P+ +RK V + V F
Sbjct: 176 RAAKVSGARFFYLLNELVILDLSLIRFALDKLIEKGFIPVIPPYMVRKYVEEGVTSFGDF 235
Query: 189 DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST 248
++ +YK+ G +D YLI TSE P+ +H + L +LPI Y GVS
Sbjct: 236 EDVIYKIEG---------------EDLYLIPTSEHPLAGMHSNEILDGHNLPILYAGVSP 280
Query: 249 CFRQEDLTKS---------------------------------------------IAYRV 263
CFR+E T I YR+
Sbjct: 281 CFRKEAGTAGKDTKGIFRVHQFHKVEQFVYARPEESWEWHEKLLQNAEEIFQALEIPYRI 340
Query: 264 VNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIE 323
VNI +G L +AAAKK D+EAW G FRE+VSCSNC ++Q+RRL +R+ K NEK
Sbjct: 341 VNICTGDLGYAAAKKYDIEAWMSAQGKFREVVSCSNCTEWQARRLNIRF--RDKPNEKPR 398
Query: 324 FVHMLNATACATTRVICAILETHQTETG-VRIPDCL 358
FVH LN+TA AT+R I AI+E Q E G V+IP L
Sbjct: 399 FVHTLNSTAIATSRAIVAIIENFQEEDGTVKIPKAL 434
>sp|O28244|SYS_ARCFU Serine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serS PE=3
SV=1
Length = 453
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 144/446 (32%), Positives = 199/446 (44%), Gaps = 112/446 (25%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS------------K 62
+PE + ++Q+ R +V++VD+ IE D KWR+ + + K +N + K
Sbjct: 11 NPEILYESQRRRGLSVDIVDRAIELDRKWREELKRVNQLRKRRNELARAVKEAKGEERAK 70
Query: 63 VIGEKMKAKEPVGDSS---------------TLPGNHLHPSVPVSNNEDENGIVRTKGDT 107
VI E E V + ++P N +H SVPV ++ EN ++ G
Sbjct: 71 VIEEAKAVSEEVKRAEEELKRLEAELEEVLLSIP-NIIHESVPVGKDDSENVPIKYWGKA 129
Query: 108 EVR----------------------KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPA 145
+V K H D + + D E A VAG R Y+L
Sbjct: 130 KVYFEDVDAFVEMTQGMAEYEVTDVKPIGHADAVEIFGWADLERAAKVAGARFYYLLNDL 189
Query: 146 VCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDS 205
V L L YAL ++ +T + P+ MR+E V + F+E +YKV
Sbjct: 190 VWLDFALTMYALDFLRKEDFTIVSPPYMMRREAYSGVTAFSDFEEVIYKV---------- 239
Query: 206 APEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQ------------- 252
E +D YLIATSE PI A+H L E LP+ Y GVS CFR+
Sbjct: 240 -----EDEDLYLIATSEHPIAAMHMREVLEERELPLLYAGVSPCFRKEAGAHGKDTKGIF 294
Query: 253 ---------------------------EDLTK-----SIAYRVVNIVSGALNHAAAKKLD 280
E++ K I YR+VNI +G L AAKK D
Sbjct: 295 RVHQFNKVEQFVFCLPEQSWEWHEKLIENVEKLWQGLGIPYRIVNICTGDLGIVAAKKYD 354
Query: 281 LEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVIC 340
LEAW P +RE+VSCSNC D+QS RL +R+ + + K FVH LN+TA ATTR I
Sbjct: 355 LEAWMPAQAKYREMVSCSNCTDWQSYRLDIRFAEERGKPSK-GFVHTLNSTAIATTRAIT 413
Query: 341 AILETHQTETG-VRIPDCLRKFVPAV 365
AI+E Q E G V IP LRK++ +
Sbjct: 414 AIIENFQLEDGRVEIPRVLRKYLEPI 439
>sp|Q82FK8|SYS1_STRAW Serine--tRNA ligase 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=serS1 PE=3 SV=1
Length = 425
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 191/438 (43%), Gaps = 101/438 (23%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++DL L R DP++VR +Q+ R ++V LVD ++ D + R + D +
Sbjct: 1 MIDLRLLRE----DPDRVRASQRARGEDVALVDSLLSADERRRSSGVRFDELRSEQKALG 56
Query: 62 KVI--------------GEKMKAKEPVGDSSTLP------------GNHLHPSVPVSNNE 95
K+I E++KA D GN +HP VPV E
Sbjct: 57 KLIPKASPEERAELLKKAEQLKADVKAADVEQHEADEEAKRLLLQLGNLVHPDVPVGGEE 116
Query: 96 D-----ENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQV 150
D +G +R G K H++L + +D E GA V+G R Y+L G L++
Sbjct: 117 DFVVLETHGTIRDFGAEGFEPK-DHLELGEALGAIDVERGAKVSGSRFYYLTGVGALLEL 175
Query: 151 GLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKD 210
LV A+++ E G+ P+ TP +R M+ L Q E +Y +
Sbjct: 176 ALVNAAIAQATEAGFIPMLTPALVRPRAMEGTGFLGQASENVYHL--------------- 220
Query: 211 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKS------------ 258
E DD YL+ TSE P+ A H D L LP+RY G S CFR+E T
Sbjct: 221 EKDDYYLVGTSEVPLAAYHMDEILDADKLPMRYAGFSPCFRREAGTYGKDTRGIFRVHQF 280
Query: 259 ---------------------------------IAYRVVNIVSGALNHAAAKKLDLEAWF 285
+ ++V+++ SG L +A +K D EAW
Sbjct: 281 DKVEMFSYVAPEDAENEHKRLLEWEKQWLTGLELPFQVIDVASGDLGASATRKFDCEAWI 340
Query: 286 PGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILET 345
P G +REL S SNC +Q+RRL VR K K++ + LN T CA R I AILE
Sbjct: 341 PTQGKYRELTSASNCDSFQARRLSVRMRDGK----KVQPLATLNGTLCAVPRTIVAILEN 396
Query: 346 HQTETG-VRIPDCLRKFV 362
HQ G VR+P+ LR ++
Sbjct: 397 HQLPDGSVRVPEMLRPYL 414
>sp|Q979Z3|SYS_THEVO Serine--tRNA ligase OS=Thermoplasma volcanium (strain ATCC 51530 /
DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=serS PE=3
SV=1
Length = 441
Score = 187 bits (476), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 138/463 (29%), Positives = 208/463 (44%), Gaps = 120/463 (25%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++D+ L R+ + E KN + R + ++D+ + D +WR + + KN +
Sbjct: 1 MIDVKLLRSNR----ELFEKNCEYRGVDKAIIDQFFKLDEEWRSVNRELNGQRAEKNRMT 56
Query: 62 KVIGEKMKAKEPVGDSS-----------------------------TLPGNHLHPSVPVS 92
+ I E +K + V + T+P N +H SVP+
Sbjct: 57 RAIAESLKRGKIVSNEKDRVELINEKIVSLEKKIREIEEERDRVLWTIP-NLIHESVPIC 115
Query: 93 NNEDENGIVRT--------------------KGDTEV--RKKYSHVDLITMIDGVDSEAG 130
++ N IVR GD EV + SHVDL + +D E+
Sbjct: 116 FGDENNKIVRYVGHAKVYRDDEEEFLKGSGGNGDYEVIDERPKSHVDLGQELGIIDLESA 175
Query: 131 AIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 190
A ++G R YF+K + L++ L YA+ ++G+T + P+ + E M+ L F +
Sbjct: 176 AKISGARFYFIKNRLLKLEMALENYAVDFLSQRGFTVVEPPYMLNLESMRGATDLETFKD 235
Query: 191 ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCF 250
LYK+ E +D YLIATSE I ++ + +L E LPIR GVS CF
Sbjct: 236 TLYKI---------------EDEDLYLIATSEHSIASMLSNEFLEEKELPIRVAGVSACF 280
Query: 251 RQE-------------------------------------------DLTKS--IAYRVVN 265
R+E ++ +S I YRVVN
Sbjct: 281 RREAGAHGKDTKGIFRVHQFNKIEQFIFCKPEDSWDYLEEILSNAEEIYRSLGIPYRVVN 340
Query: 266 IVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFV 325
+ SG L AAKK D+EAWFP G FRE+VS SN DYQ+R L ++Y ++ EFV
Sbjct: 341 VCSGELGRLAAKKYDIEAWFPAQGKFREIVSASNDTDYQARSLNIKYRKSGGN----EFV 396
Query: 326 HMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVN 368
H LN+TA ATTR++ AI+E Q + +RIPD L + Y++
Sbjct: 397 HTLNSTAIATTRILVAIMENFQEDGRIRIPDVLVPYTGFQYID 439
>sp|Q2FS27|SYS_METHJ Serine--tRNA ligase OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=serS PE=3 SV=1
Length = 425
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/439 (30%), Positives = 205/439 (46%), Gaps = 98/439 (22%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDR--FKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD+ R +P+ +R++ K R + + +D ++ D++ R+ + + + +N
Sbjct: 1 MLDIRFVR----ANPDAIREDLKKRNDMEKLAWIDDLLVQDIRHRELIGQTNELRRRRNS 56
Query: 60 CSKVIGEKMKAKEP----VGDSSTLPG------------------------NHLHPSVPV 91
S I KA E + +++ LPG N LH SVPV
Sbjct: 57 ISYDINRAKKAGEDASALIAEAAGLPGRIKENEAEMEEISKKIRYYLMRIPNILHESVPV 116
Query: 92 SNNEDENGIVRTKGD--TEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQ 149
++ +N V+ G T + +H L D D E +G YFLKG V L
Sbjct: 117 GADDTQNVEVKRYGTPRTFTFELKNHGQLAADNDWADFERATKTSGAGFYFLKGNLVLLD 176
Query: 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEK 209
+ L +++L +EKGYTP+ P+ + ++ +EV L F++ +YK+
Sbjct: 177 LALQRFSLDILMEKGYTPIIPPYMINRKSYEEVTDLDDFEKVMYKI-------------- 222
Query: 210 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQ----------------- 252
E DD YLIATSE P+ A+++D E LP+R G+S CFR+
Sbjct: 223 -EDDDAYLIATSEHPMAAMYQDEIFEEKDLPLRLAGLSPCFRREIGSHGLDTKGLFRVHQ 281
Query: 253 -------------------EDLTKS---------IAYRVVNIVSGALNHAAAKKLDLEAW 284
E+L ++ I YRVVNI +G + AAKK D+EAW
Sbjct: 282 FHKVEQFVYCHPDDSWTIHEELRENAEEIFQKLEIPYRVVNICTGDIGTVAAKKYDIEAW 341
Query: 285 FPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILE 344
P +RE+VSCSNC YQ+ RL +R + K +FVH LN+TA AT+R + AILE
Sbjct: 342 MPRENEYREVVSCSNCTTYQAVRLNIRVRDKEDFESK-QFVHTLNSTAIATSRAMRAILE 400
Query: 345 THQTETG-VRIPDCLRKFV 362
+Q E G V IP LR ++
Sbjct: 401 NNQQEDGSVVIPKVLRPYM 419
>sp|Q4J8I4|SYS_SULAC Serine--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC 33909
/ DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=serS
PE=3 SV=1
Length = 458
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 207/456 (45%), Gaps = 122/456 (26%)
Query: 5 LDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQ-------FRH--------- 48
L+L R +PE +++N K RF + VDK +E D KWRQ RH
Sbjct: 6 LELIR----NNPEVLKENLKRRFIDTSTVDKAVELDKKWRQTLQEVERLRHEHNLISSQI 61
Query: 49 -------KADNFNKFKNLCSKVIGEKMKAKEPVGDSS-----TLPGNHLHPSVPVSNNED 96
K++ NK K L K + +K K + + + +LP N +H SVP+ +E
Sbjct: 62 PKAPKEQKSELINKAKELL-KTLEDKEKELQKIEEERENLLLSLP-NLVHDSVPIGPDES 119
Query: 97 ENGIVRTKG---------------------DTEV--RKKYSHVDLITMIDGV-DSEAGAI 132
+ +R G D EV K H D++ + + D++
Sbjct: 120 YSVPIRFWGKFKVYKDDVNEFLKQTNGHKVDYEVINWKPVGHADMLENVLRLGDTKKAGE 179
Query: 133 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL 192
VA R Y+L V L + L+ YA+ +GYT + P+ +R EV++ V L F + +
Sbjct: 180 VAASRFYYLFNDIVWLDLALLLYAIDTITSRGYTLVLPPYMLRGEVIKSVIDLDTFKDAI 239
Query: 193 YKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQ 252
YK+ G +D YLIAT+E I A++ +P+ LP++ +GVS FR+
Sbjct: 240 YKIEG---------------EDLYLIATAEHSIAALYYKEEIPKEELPLKLVGVSPAFRK 284
Query: 253 E------DLTK---------------------------------------SIAYRVVNIV 267
E DL + YRV+NI
Sbjct: 285 EAGAANKDLKGIFRVHQFHKVEQFIFSSPEDSWKYHEEMIENAEEIFRGLGLPYRVINIA 344
Query: 268 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHM 327
SG L AAKK DLE W P FRE+VSCSNCLD+Q+ R+ +RY + N K ++H
Sbjct: 345 SGDLGAPAAKKYDLEVWMPAQAKFREMVSCSNCLDWQAYRMRIRYVEK---NNKKGYLHT 401
Query: 328 LNATACATTRVICAILETHQTETG-VRIPDCLRKFV 362
LN+TA A+TR I AILE Q E G V +P LRK++
Sbjct: 402 LNSTAIASTRAITAILENFQKEDGVVEVPKVLRKYL 437
>sp|Q970Y4|SYS_SULTO Serine--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=serS PE=3 SV=1
Length = 453
Score = 185 bits (469), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 204/446 (45%), Gaps = 116/446 (26%)
Query: 14 GDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS------------ 61
+P+K+++ K RF +V LVD+ +E D KWRQ + + N+ S
Sbjct: 11 NNPDKLKEYIKRRFIDVSLVDRAVELDKKWRQTLQEVEKLRHEHNVISSSIPKAKPEERQ 70
Query: 62 ----------KVIGEKMKAKEPVGDSS-----TLPGNHLHPSVPVSNNEDENGIVRTKGD 106
K + EK K + + + LP N + S P+ +E + +R G
Sbjct: 71 ELIKKAKELLKALEEKEKELDNIENERDNILMQLP-NIVDDSAPIGPDETYSVPIRFWGK 129
Query: 107 TEVRKK-----------------------YSHVDLITMIDGV-DSEAGAIVAGGRGYFLK 142
+V +K H D++ + + D++ A V+G R Y+L
Sbjct: 130 FKVYEKDEAEFLSQLKGNRVDYEIIHWKPVGHADMLENVLKLGDTKKAAEVSGARFYYLF 189
Query: 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKV 202
V L + L+ YA+ KGYT + P+ +R EV++ V L F + +YK+
Sbjct: 190 DDIVWLDIALLNYAIDTMTSKGYTLVLPPYMLRGEVIKSVIDLDTFKDAIYKI------- 242
Query: 203 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE--------- 253
E +D YLIAT+E PI A++ +P+ LP++Y+G+S FR+E
Sbjct: 243 --------ENEDLYLIATAEHPIAALYFKEEIPKEKLPLKYVGISPAFRKEAGAANKDLK 294
Query: 254 ---------------------------DLTKS---------IAYRVVNIVSGALNHAAAK 277
+L ++ + YRV+NI +G L AAK
Sbjct: 295 GIFRVHQFHKVEQFIFSSPEDSWKLHEELIRNAEEIFQGLGLPYRVINIATGDLGACAAK 354
Query: 278 KLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTR 337
K DLE W P FRE+VSCSNCLD+Q+ R+ +RY + K +VH LN+TA A+TR
Sbjct: 355 KYDLEVWMPAQAKFREMVSCSNCLDWQAYRMRIRYVEK---GGKKGYVHTLNSTAIASTR 411
Query: 338 VICAILETHQTETG-VRIPDCLRKFV 362
I AILE +Q E G V IP L+K++
Sbjct: 412 TITAILENYQREDGVVEIPKVLKKYL 437
>sp|A9A4V3|SYS_NITMS Serine--tRNA ligase OS=Nitrosopumilus maritimus (strain SCM1)
GN=serS PE=3 SV=1
Length = 421
Score = 184 bits (468), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 134/426 (31%), Positives = 196/426 (46%), Gaps = 100/426 (23%)
Query: 16 PEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVG 75
P+ +R K R + +L D +IE+D K R+F K D F K +N I +K KA E
Sbjct: 11 PQVIRDMLKARAVDFDL-DGLIESDQKRREFIIKTDEFKKRRNEIGNEIAQKKKAGE--- 66
Query: 76 DSSTLPG-------------------------------NHLHPSVPVSNNEDENGIVRTK 104
D+ST+ N +H SVPV ++ N +R
Sbjct: 67 DTSTILDEMKNVSAELAKLESQQEEIESKYAKLAFTVPNLVHESVPVGPDDTANKEMRKW 126
Query: 105 GDTEVR--KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIE 162
G+ K H+D+ +D VD E A VAG R Y+LK V L L+ +AL E
Sbjct: 127 GEIPQFDFKINDHIDMSENLDLVDLERAAKVAGARFYYLKNDLVRLNQSLIHFALDFLAE 186
Query: 163 KGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSE 222
K Y+ + P+ + + M+ F+E +YKV E +D Y+I TSE
Sbjct: 187 KEYSLVQPPYMINRSSMEGAVIADDFEEVIYKV---------------EEEDLYMIGTSE 231
Query: 223 QPICAVHRDSWLPEASLPIRYLGVSTCFRQE----------------------------- 253
+ A+H + LPIRY GVS CFR+E
Sbjct: 232 HAMAAMHSKEIIEGKDLPIRYAGVSPCFRKEAGAHGRDQKGIFRVHQFDKIEQFVYARPE 291
Query: 254 DLTKS----------------IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSC 297
D K I +RV+ + +G + +AK D+EAW G ++RE+VSC
Sbjct: 292 DSWKEHEKMLAVAEEFYQKLEIPHRVMLLSTGDMGKISAKTYDIEAWMAGQNSYREIVSC 351
Query: 298 SNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPD 356
SNCLDYQ+RRL +R+ K NE +++H LN+T ATTRV+ +I+E QT+ G ++IP
Sbjct: 352 SNCLDYQARRLKIRF--RDKTNEDTQYIHTLNSTLVATTRVLVSIMENFQTKDGHIKIPQ 409
Query: 357 CLRKFV 362
L+ ++
Sbjct: 410 VLQSYM 415
>sp|A2SRC6|SYS_METLZ Serine--tRNA ligase OS=Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z) GN=serS PE=3 SV=1
Length = 425
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/409 (31%), Positives = 187/409 (45%), Gaps = 98/409 (23%)
Query: 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE-KMKAKEPV---GDSSTLPG------ 82
VD V+E D +R+ K + +N +K I K + K+P ++ LPG
Sbjct: 30 VDTVLEQDKLFRELTVKNNELRARRNQIAKEINAYKKEGKDPAPLFAEAKALPGLIKDND 89
Query: 83 ------------------NHLHPSVPVSNNEDENGIVRTKG-----DTEVRKKYSHVDLI 119
N LH SVP ++ EN +V+ G D E++ +H +L
Sbjct: 90 DIMEKATEQVRYYLMRLPNILHESVPYGKDDTENVVVKKVGTPRSLDFELK---NHGELA 146
Query: 120 TMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVM 179
D E +G YFLKG L + L ++AL I KGYTP+ P+ M ++
Sbjct: 147 AANGWADFERATKTSGAGFYFLKGNLALLDMALQRFALDTIIAKGYTPIIPPYMMNRKSY 206
Query: 180 QEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASL 239
+EV L F++ +YK+ E DD YLIAT+E P+ A+++D E L
Sbjct: 207 EEVTDLGDFEKVMYKI---------------EDDDAYLIATAEHPMAAMYQDEIFEEKDL 251
Query: 240 PIRYLGVSTCFRQE---------------DLTK--------------------------- 257
P++ +G+S CFR+E TK
Sbjct: 252 PLKMVGISPCFRREIGAHGLDSRGLFRVHQFTKIEQFIYCMPEKSWEMHEELLANAEEIF 311
Query: 258 ---SIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQ 314
+ YRVVNI +G + AAKK D+EAW P +RE+VSCSNC YQS RL +R
Sbjct: 312 TKLGLPYRVVNICTGDIGTVAAKKYDMEAWMPRDNEYREVVSCSNCTAYQSVRLNIRVRD 371
Query: 315 TKKMNEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFV 362
K +++H LN+TA AT+R + ILE +QTE G V IP LR ++
Sbjct: 372 AHDFESK-QWLHTLNSTAVATSRALRCILENYQTEDGKVEIPKVLRPYM 419
>sp|Q6KZN5|SYS_PICTO Serine--tRNA ligase OS=Picrophilus torridus (strain ATCC 700027 /
DSM 9790 / JCM 10055 / NBRC 100828) GN=serS PE=3 SV=1
Length = 444
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 206/466 (44%), Gaps = 122/466 (26%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++D+ L R + E K+ +DR + ++D+ E D +W++ + +N KN +
Sbjct: 1 MIDIKLLRL----NSEIFYKSCRDRGFDTRILDEFFELDNEWKENLKQLNNIKHDKNSIT 56
Query: 62 KVIGEKMKAKEPVGDSST----------------------------LPGNHLHPSVPVSN 93
I ++K+ + + D L N L VP
Sbjct: 57 MEISRRIKSGDDINDLKLKVESLNIDIQRLEGRQNEIDVKRNEILRLIPNLLADDVPRCF 116
Query: 94 NEDENGIVRTKGDTEVRK---KY------------------SHVDLITMIDGVDSEAGAI 132
++ N +VR G V KY SHVDLI+ ++ D E
Sbjct: 117 GDENNRLVRYYGRARVFSDDVKYFIENSGSGDYEEIDYRPKSHVDLISELNLADIERAGK 176
Query: 133 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL 192
+AG R YFLK L++ L+ YA+ ++GYT L PF + + M + F + L
Sbjct: 177 IAGARFYFLKNRLFKLELALINYAVDFLSQRGYTVLEPPFMINYKSMSGATDIETFKDTL 236
Query: 193 YKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQ 252
YK+ G DD YLIAT+E PI ++ +D L E LPIR GVS CFR+
Sbjct: 237 YKIEG---------------DDLYLIATAEHPIASMLQDEILMEDELPIRVSGVSPCFRR 281
Query: 253 E-------------------------------------------DLTKS--IAYRVVNIV 267
E D+ KS I YRVVN+
Sbjct: 282 EAGAHGKDTKGIFRVHQFNKIEQFVFCKPEDSWDFFDELVRNSEDIYKSLKIPYRVVNVC 341
Query: 268 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHM 327
SG L + AAKK D+EAWFP G FRE+VS SN DYQ+R L ++Y +++ N FVH
Sbjct: 342 SGELGNLAAKKYDIEAWFPAQGKFREIVSASNDTDYQARSLNIKY-RSRDGN---RFVHT 397
Query: 328 LNATACATTRVICAILETHQTETG--VRIPDCLRKFVPAVYVNEAG 371
LN+TA AT R++ AI+E Q G ++IP+ L +P +E G
Sbjct: 398 LNSTAIATERILVAIMENFQDRNGKVIKIPEVL---IPYTGFSEIG 440
>sp|A3CTP4|SYS_METMJ Serine--tRNA ligase OS=Methanoculleus marisnigri (strain ATCC 35101
/ DSM 1498 / JR1) GN=serS PE=3 SV=1
Length = 425
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 193/425 (45%), Gaps = 94/425 (22%)
Query: 16 PEKVRKNQKDRFKNVEL--VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKA--- 70
PE VR + R +L VD+V+E D + R+ + +N+ S+ I + KA
Sbjct: 11 PEIVRADLTKRGDTEKLAWVDEVLEMDRRARELTVAIGDLRNRRNVISREISQARKAGND 70
Query: 71 -KEPVGDSSTLP------------------------GNHLHPSVPVSNNEDENGIVRTKG 105
E + +++ LP N LH SVPV ++ EN +R G
Sbjct: 71 ITELLAEAAGLPERIKEVETERETLTEAVRYRLMRLPNILHESVPVGKDDSENVEIRRWG 130
Query: 106 DTEVRK--KYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEK 163
+ E+ +H L D E A +AG YFLKG L + L ++A+ +E
Sbjct: 131 EPEIPAFDLENHGALAVEHGWADFERAAKIAGSGFYFLKGRLALLDMALQRFAMDILVEH 190
Query: 164 GYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223
GYTP+ P+ M + + V LA F+ +Y++ G +D+YLIATSE
Sbjct: 191 GYTPIIPPYMMNRAAYEGVTDLADFENVMYRIDG---------------EDEYLIATSEH 235
Query: 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQE------------------------------ 253
P+ A++ D E LP+R G+S CFR+E
Sbjct: 236 PMAAMYCDEIFEEKDLPLRLAGLSPCFRREIGAHGLDTKGLFRVHQFHKVEQFIYATPEQ 295
Query: 254 --DLTKSIA-------------YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCS 298
DL + + YR+V+I +G + AAKK DLE W P +RE VSCS
Sbjct: 296 SWDLHEELMANAEEVFQRLGLPYRIVSICTGDIGTVAAKKYDLEVWMPREERYREAVSCS 355
Query: 299 NCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDC 357
NC YQ+ RL ++ + EK +VH LN+TA AT+R I AILE +Q E G V IP
Sbjct: 356 NCTAYQAVRLNIKVRNPTEFTEK-RYVHTLNSTAIATSRAIRAILENNQNEDGSVTIPKA 414
Query: 358 LRKFV 362
LR ++
Sbjct: 415 LRPYL 419
>sp|Q9HKX5|SYS_THEAC Serine--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=serS
PE=3 SV=1
Length = 441
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 168/356 (47%), Gaps = 87/356 (24%)
Query: 79 TLPGNHLHPSVPVSNNEDENGIVRTKGDTEV----------------------RKKYSHV 116
T+P N +H SVPV ++ N +VR G +V + SHV
Sbjct: 103 TIP-NLVHESVPVCFGDENNQLVRYVGHAKVFRDDIEEFKKNSGNSQDYEVLDERPKSHV 161
Query: 117 DLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 176
DL ++ +D E+ A ++G R YF+K + L++ L YA+ ++G++ + P+ +
Sbjct: 162 DLGLDLNVIDLESAARISGSRFYFIKNRLLKLEMALENYAVDFLSQRGFSIVEPPYMLNL 221
Query: 177 EVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPE 236
E M+ L F + LYK+ G +D YLIATSE I A+ + +L E
Sbjct: 222 ESMRGATDLETFKDTLYKIEG---------------EDLYLIATSEHSIAAMLSNQFLEE 266
Query: 237 ASLPIRYLGVSTCFRQE--------------------------------DLTK------- 257
LP+R G+S CFR+E D +
Sbjct: 267 KDLPLRVAGISACFRREAGAHGKDTKGIFRVHQFNKIEQFVFCKPEDSWDFLEEILGNAE 326
Query: 258 ------SIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVR 311
I YRVVN+ SG L AAKK D+EAWFP G FRE+VS SN DYQ+R L ++
Sbjct: 327 AIYRSLGIPYRVVNVCSGELGRLAAKKYDIEAWFPAQGKFREIVSASNDTDYQARSLNIK 386
Query: 312 YGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYV 367
Y + +E FVH LN+TA ATTR++ AI+E Q +RIPD L + Y+
Sbjct: 387 Y----RTSEGNRFVHTLNSTAIATTRILVAIMENFQEGDRIRIPDVLVPYTGFQYI 438
>sp|B1VP80|SYS_STRGG Serine--tRNA ligase OS=Streptomyces griseus subsp. griseus (strain
JCM 4626 / NBRC 13350) GN=serS PE=3 SV=1
Length = 425
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 129/438 (29%), Positives = 190/438 (43%), Gaps = 101/438 (23%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++DL L R DP++VR +Q+ R ++V LVD ++ D R + D +
Sbjct: 1 MIDLRLLRE----DPDRVRASQRARGEDVGLVDALLSADELRRSSGVRFDELRAEQRSLG 56
Query: 62 KVI--------GEKMKAKEPVGDSSTLP------------------GNHLHPSVPVSNNE 95
K+I E +K E + GN +H VPV E
Sbjct: 57 KLIPKATPEERTELLKKAEQLKADVKAADAAQDEAAADAKRLLLQLGNIVHEDVPVGGEE 116
Query: 96 D-----ENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQV 150
D +G +R G K H++L + +D E GA V+G R Y+L G L++
Sbjct: 117 DFVVLETHGTIRDFGAEGFEPK-DHLELGEALGAIDMERGAKVSGSRFYYLTGVGALLEL 175
Query: 151 GLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKD 210
LV A+++ E G+ P+ TP +R M+ L Q E +Y +
Sbjct: 176 ALVNAAIAQATEAGFVPMLTPALVRPRAMEGTGFLGQAAENVYHL--------------- 220
Query: 211 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKS------------ 258
E DD YL+ TSE P+ A H D + LP+RY G S CFR+E T
Sbjct: 221 EKDDYYLVGTSEVPLAAYHMDEIIDADKLPLRYAGFSPCFRREAGTYGKDTRGIFRVHQF 280
Query: 259 ---------------------------------IAYRVVNIVSGALNHAAAKKLDLEAWF 285
+ ++V+++ +G L +A++K D EAW
Sbjct: 281 DKVEMFSYVDPADAEAEHRRLLDWEKQWLTALELPFQVIDVATGDLGSSASRKFDCEAWI 340
Query: 286 PGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILET 345
P G +REL S SNC +Q+RRL VR + K K++ + LN T CA R I AILE
Sbjct: 341 PTQGKYRELTSASNCDGFQARRLSVRMREGK----KVQPLATLNGTLCAVPRTIVAILEN 396
Query: 346 HQTETG-VRIPDCLRKFV 362
HQ G VR+P+ LR ++
Sbjct: 397 HQLPDGSVRVPEMLRPYL 414
>sp|Q9ZBX1|SYS_STRCO Serine--tRNA ligase OS=Streptomyces coelicolor (strain ATCC BAA-471
/ A3(2) / M145) GN=serS PE=3 SV=1
Length = 425
Score = 177 bits (450), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 192/437 (43%), Gaps = 99/437 (22%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++DL L R DP++VR +Q+ R ++V LVD ++ D + R + D +
Sbjct: 1 MIDLRLLRE----DPDRVRASQRARGEDVALVDSLLSADERRRSSGVRFDELRAEQKGLG 56
Query: 62 KVIG--------EKMKAKEPVGDSSTLP------------------GNHLHPSVPVSNNE 95
K+IG E +K E + GN +HP VPV E
Sbjct: 57 KLIGKAAGDEKAELLKRAEQLKTDVKAADAERDAADAETQELLQRLGNLVHPDVPVGGEE 116
Query: 96 D----ENGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVG 151
D E E + H++L ++ +D E GA V+G R YFL G L++
Sbjct: 117 DFVTLETHGTHRDFAAEGFEPRDHLELGQLLGAIDVERGAKVSGSRFYFLTGVGALLELA 176
Query: 152 LVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDE 211
LV A+++ G+TP+ TP +R + M L Q +++Y + +
Sbjct: 177 LVNAAIAQATAAGFTPMLTPALVRPQSMAGTGFLGQAAQDVYHL---------------D 221
Query: 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED----------------- 254
DD YL+ TSE P+ A H D L LP+RY G S CFR+E
Sbjct: 222 KDDLYLVGTSEVPLAAYHMDEILDGDRLPLRYAGFSPCFRREAGSHGKDTRGIFRVHQFD 281
Query: 255 ---------------------------LTK-SIAYRVVNIVSGALNHAAAKKLDLEAWFP 286
LT + +RV+++ S L +AA+K D EAW P
Sbjct: 282 KVEMFSYVLPEDSQAEHQRLLEWEKQWLTSLELPFRVIDVASADLGSSAARKYDCEAWIP 341
Query: 287 GSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETH 346
G +REL S S+C ++QSRRL +R + KK+ + LN T CA R I AILE H
Sbjct: 342 TQGKYRELTSTSDCTEFQSRRLSIRVREGKKVRP----LATLNGTLCAVPRTIVAILENH 397
Query: 347 QTETG-VRIPDCLRKFV 362
Q G VR+P+ LR ++
Sbjct: 398 QQADGSVRVPEVLRPYL 414
>sp|B8D3V1|SYS_DESK1 Serine--tRNA ligase OS=Desulfurococcus kamchatkensis (strain 1221n
/ DSM 18924) GN=serS PE=3 SV=1
Length = 459
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 205/446 (45%), Gaps = 115/446 (25%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWR-------QFRHKAD---------------- 51
+PE ++++ K RF + LVD+ + DL+WR + RH+ +
Sbjct: 12 NPELLKEHVKKRFMDPSLVDEAYKLDLEWRRLLSQVQELRHRHNVISRDISKLPEPERSA 71
Query: 52 NFNKFKNLCSKV--IGEKMKAKEPVGDSSTLP-GNHLHPSVPVSNNEDENGIVRTKGDTE 108
N+ + L S++ + +K+K E + + + L N +H +VPV ++ N +R G +
Sbjct: 72 RINEARELLSQMEELEKKLKEIEDLREEALLKLPNIVHETVPVGPDDTYNVPIRFWGKPK 131
Query: 109 VRKKY-------------------------SHVDLITMIDGV-DSEAGAIVAGGRGYFLK 142
V Y H D++ + + D+ VAG R Y+L
Sbjct: 132 VWSGYIEQFMQQTERYGFKVEYELVNWKPVGHADMLEYVLRLGDTVKAGEVAGSRFYYLF 191
Query: 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKV 202
V L + L+ YA+ KGY + P+ +R +VM V LA F + +YK+ G
Sbjct: 192 DDIVFLDIALLMYAIDSLTSKGYKLVLPPYMLRHKVMSGVIDLATFKDAIYKIEG----- 246
Query: 203 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQ---------- 252
+D YLIAT+E + A+H +PE LP++Y+GVS CFR+
Sbjct: 247 ----------EDLYLIATAEHSLAALHAFEEIPEEELPLKYVGVSPCFRKEAGAGNRDLK 296
Query: 253 ---------------------------------EDLTKS--IAYRVVNIVSGALNHAAAK 277
EDL K + YRVVNI SG L AAK
Sbjct: 297 GIFRVHQFHKVEQYVYAKPEESWALMEELIGNAEDLFKGLELPYRVVNIASGDLGAPAAK 356
Query: 278 KLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTR 337
K DLE W P G FRE+VSCSN D+QS RL R + K M + E+VH LN+TA A+TR
Sbjct: 357 KYDLETWMPAQGLFREMVSCSNTTDWQSYRLKTRLVRRKGMVK--EYVHTLNSTAIASTR 414
Query: 338 VICAILETHQTETG-VRIPDCLRKFV 362
I +ILE Q E G V +P LRK++
Sbjct: 415 TITSILENRQNEDGTVTVPRVLRKYL 440
>sp|A7I890|SYS_METB6 Serine--tRNA ligase OS=Methanoregula boonei (strain 6A8) GN=serS
PE=3 SV=1
Length = 425
Score = 175 bits (444), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 131/431 (30%), Positives = 194/431 (45%), Gaps = 109/431 (25%)
Query: 11 EKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK- 69
E+ G PEK+ VD+++ D + R+ + + D + +N ++ I E K
Sbjct: 19 ERRGTPEKI-----------AWVDEILAKDARSRELKVQTDELRRRRNTIAREINEARKT 67
Query: 70 ---AKEPVGDSSTLPG------------------------NHLHPSVPVSNNEDENGIVR 102
A + +++ LP N LH SVP ++ EN +R
Sbjct: 68 GKDAAPLLREAAELPQKIKANDAEQEEISGIIRTRLMRLPNILHESVPKGKDDTENVEIR 127
Query: 103 TKG-----DTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYAL 157
G D E++ +H L D E A +G YFLKG V L + L ++AL
Sbjct: 128 RVGTPRTFDFELK---NHGQLAADNGWADFERAAKTSGAGFYFLKGGLVMLDLALQRFAL 184
Query: 158 SKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYL 217
+KG+TP+ PF ++++ + V L F++ +YK+ G DD YL
Sbjct: 185 DLLGKKGFTPVIPPFMIKRDSYEGVTDLDDFEKVMYKIDG---------------DDTYL 229
Query: 218 IATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE---------------DLTK----- 257
IATSE PI A+++D E LP+R G+S CFR+E TK
Sbjct: 230 IATSEHPIAAMYQDEIFEEKDLPLRLCGLSPCFRREIGAHGLDTKGLFRVHQFTKIEQFV 289
Query: 258 -------------------------SIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFR 292
+ Y VVNI +G + AAKK D+EAW P A++
Sbjct: 290 FCRPENSWQIHEELLANAEEVFTKLGLPYHVVNICTGDIGTVAAKKYDIEAWMPRENAYK 349
Query: 293 ELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG- 351
E+VSCSNC YQ+ L +R + K+ E VH LN+TA AT+R + ILE +Q G
Sbjct: 350 EVVSCSNCTSYQAASLNIRV-RDKENFETKHLVHTLNSTAIATSRALRCILENYQNRDGS 408
Query: 352 VRIPDCLRKFV 362
V IPD LR+++
Sbjct: 409 VTIPDVLRQYM 419
>sp|A4YI40|SYS_METS5 Serine--tRNA ligase OS=Metallosphaera sedula (strain ATCC 51363 /
DSM 5348) GN=serS PE=3 SV=1
Length = 455
Score = 174 bits (442), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 139/456 (30%), Positives = 201/456 (44%), Gaps = 121/456 (26%)
Query: 5 LDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVI 64
L+L R +P+ + ++ + R N +L +K +E D KWR + + N+ S I
Sbjct: 6 LELIR----NNPDSLMESLRKRNVNPQLAEKAVELDKKWRAILQEVEKLRHEHNVVSSQI 61
Query: 65 G-------------------------EKMKAKEPVGDS--STLPGNHLHPSVPVSNNEDE 97
+++K E D+ TLP N +H SVPV ++
Sbjct: 62 PRLSPEERKKKIEEARNLLSIIEAKEKELKTIEEERDNILRTLP-NVVHESVPVGPDDSY 120
Query: 98 NGIVRTKGDTEVRKKYSHVDLITMIDGVDSEAGAI------------------------- 132
N ++ G V +K + + ++ + G++ + I
Sbjct: 121 NVPIKVWGKFRVYEKDVN-EFLSQVKGLNPDYEIIKFKPVGHADELEAVLKLGNTAKAGE 179
Query: 133 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL 192
VAG R Y+L L+ L+ YAL KGY+ + P+ +R EV+Q V L F + +
Sbjct: 180 VAGSRFYYLFEDVAWLEQALIAYALDVITSKGYSLVIPPYMLRGEVIQSVIDLDTFKDAI 239
Query: 193 YKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQ 252
YK+ G +D YLIAT+E PI A++ + LP+RY+G+S FR+
Sbjct: 240 YKIEG---------------EDLYLIATAEHPIAALYFKEEIEAERLPLRYVGLSPAFRK 284
Query: 253 E------DLTK---------------------------------------SIAYRVVNIV 267
E DL + YRVVNI
Sbjct: 285 EAGAANKDLKGIFRVHQFNKVEQFIFSLPEDSWKFHEELLGNAEQIFQGLELPYRVVNIA 344
Query: 268 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHM 327
SG L AAKK DLE W P FRE+VSCSNC D+Q+ R+ +R+ KK N K FVH
Sbjct: 345 SGDLGACAAKKYDLEVWMPAQAKFREMVSCSNCTDWQAFRMKIRFVDRKK-NRK-GFVHT 402
Query: 328 LNATACATTRVICAILETHQTETG-VRIPDCLRKFV 362
LN+TA ATTR I AILE +Q E G V IP LR ++
Sbjct: 403 LNSTAVATTRAITAILENNQLEDGSVVIPKVLRPYL 438
>sp|A3DP85|SYS_STAMF Serine--tRNA ligase OS=Staphylothermus marinus (strain ATCC 43588 /
DSM 3639 / F1) GN=serS PE=3 SV=1
Length = 459
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 143/476 (30%), Positives = 211/476 (44%), Gaps = 130/476 (27%)
Query: 16 PEKVRKNQKDRFKNVELVDKVIENDLKWR-------QFRHKADNFNKFKNLCSKVIGEKM 68
PE+++++ K RF + +VD+ + DL+WR + RHK + ++ V EK
Sbjct: 13 PEELKEHVKKRFMDPSIVDEAYKTDLEWRRTLTYIQELRHKHNVVSREIPKLKGVDKEK- 71
Query: 69 KAKEPVGDSS---------------------TLPGNHLHPSVPVSNNEDENGIVRTKGDT 107
K KE +LP N +H +VPV ++ N +R G
Sbjct: 72 KIKEAKQLLKELEEVEKKLKELEEKRQKLLFSLP-NIVHETVPVGPDDTYNVPIRFWGKP 130
Query: 108 EVRKKY-------------------------SHVDLITMIDGV-DSEAGAIVAGGRGYFL 141
V K + H D++ + + D+ VAG R Y+L
Sbjct: 131 RVWKGFIDQFKEQTEKYGFKVEYEVIDWKPVGHADMLEKVLRLGDTFKAGQVAGSRFYYL 190
Query: 142 KGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEK 201
V L + L+ YA+ KGYT + P+ +R +VM V + F + +YK+ G
Sbjct: 191 FNDIVFLDMALLAYAIDYLTSKGYTLVLPPYMLRHKVMMGVIDMDTFKDAIYKIEG---- 246
Query: 202 VGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE-------- 253
+D YLIAT+E P+ A+H +PE LP++Y+G+S CFR+E
Sbjct: 247 -----------EDLYLIATAEHPLAALHAWEDIPEEELPLKYVGISPCFRKEAGAGNRDL 295
Query: 254 ------------------------DLTK-------------SIAYRVVNIVSGALNHAAA 276
D+ + I YR+VNI SG L AA
Sbjct: 296 KGIFRVHQFHKVEQFVYAKPEDSWDIMEELISNAEHLFRGLGIPYRIVNIASGDLGAPAA 355
Query: 277 KKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATT 336
KK DLEAW P G +RE+VSCSN D+Q+ RL +R + K M + E++H LN+TA A+T
Sbjct: 356 KKYDLEAWMPAQGRYREMVSCSNVTDWQAFRLRIRLIRRKGMVK--EYLHTLNSTAIAST 413
Query: 337 RVICAILETHQTETG-VRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKK 391
R I AILE Q G V +P LRK++ K+APID K++K
Sbjct: 414 RTITAILENFQEPDGTVIVPKVLRKYLEV-----------FKSAPIDAIHPVKKEK 458
>sp|A8AB67|SYS_IGNH4 Serine--tRNA ligase OS=Ignicoccus hospitalis (strain KIN4/I / DSM
18386 / JCM 14125) GN=serS PE=3 SV=1
Length = 458
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 167/356 (46%), Gaps = 90/356 (25%)
Query: 79 TLPGNHLHPSVPVSNNEDENGIVRTKGDTEVRKKY------------------------- 113
+LP N +HPSVP +ED N VR G +V K +
Sbjct: 104 SLP-NLVHPSVPEGCDEDHNVPVRFWGKPKVWKGHLEEFEKQTKRWGFEVEHEVVEEKPV 162
Query: 114 SHVDLITMIDGV-DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPF 172
H D++ + + ++ A VA R Y+L V L L+ YA+ +KG+ + P+
Sbjct: 163 GHADMLEKVLRLGNTYKAAQVASSRFYYLFKDLVWLDYALMMYAMDFLSKKGFVLVEPPY 222
Query: 173 FMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDS 232
+R +V++ V + F + +YK+ G +D YLIATSE P+ A +
Sbjct: 223 MVRYKVLRGVIDVETFKDAIYKIEG---------------EDLYLIATSEHPLAAYKMEE 267
Query: 233 WLPEASLPIRYLGVSTCFRQE--------------------------------------- 253
+ E+ LPI+ GVS CFR+E
Sbjct: 268 IIDESELPIKLAGVSPCFRKEAGAGNRDLKGIFRVHQFHKVEQFVFSKPEDSWEVLEELI 327
Query: 254 ----DLTKSI--AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRR 307
+L K + YRVVN+ G L AAKK DLE W+P G +RELVS SNC D+QS R
Sbjct: 328 RNAEELVKGLELPYRVVNVCGGELGSPAAKKYDLEVWYPAQGKYRELVSASNCTDWQSYR 387
Query: 308 LLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFV 362
L +RY K +K +FVH LN+TA ATTR I AILE HQ G VRIP LRK++
Sbjct: 388 LKIRY--RIKGGKKHDFVHTLNSTALATTRTITAILENHQLPDGRVRIPRALRKYL 441
>sp|O33780|SYS_SULSO Serine--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=serS PE=3 SV=2
Length = 457
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 201/457 (43%), Gaps = 119/457 (26%)
Query: 5 LDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNF----NKFKNLC 60
L+L R +PE ++ N K R +V LVDK +E D KWRQ + + N +
Sbjct: 6 LELLRK----NPEDLKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVEKLRHQHNVLSSQI 61
Query: 61 SKVIGEKMKAKEPVGDS-----------------------STLPGNHLHPSVPVSNNEDE 97
SK+ GE+ K K + S+LP N + VP ++
Sbjct: 62 SKLSGEERKKKIEESKNLLKILEEKEKELEEIENERDRLLSSLP-NLVADDVPNGPDDSY 120
Query: 98 NGIVRTKGDTEVR-----------------------KKYSHVDLITMIDGV-DSEAGAIV 133
N ++ G +V K H +++ + + ++ A +
Sbjct: 121 NVPIKFWGKFKVYEGDVQEFLKQIKDAKVNYEVIKWKPKGHAEMLEDVLHLGNTLKAAEI 180
Query: 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 193
AG R Y+L V L L+ +A+ ++GYT + P+ +R EV+Q V L F + +Y
Sbjct: 181 AGSRFYYLFNDIVWLDFSLLLFAIDYITQQGYTLVLPPYMLRGEVIQSVIDLDTFKDAIY 240
Query: 194 KVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 253
K+ E +D YLIAT+E PI A+ + + LP+++ G+S FR+E
Sbjct: 241 KI---------------ENEDLYLIATAEHPIAAMFFKEEIEKDKLPLKFAGISPAFRKE 285
Query: 254 ------DLTK---------------------------------------SIAYRVVNIVS 268
DL + YR+VNI S
Sbjct: 286 ASAANKDLKGIFRVHQFHKVEQFIFSTPEDSWKYHSELITNAESIFQQLELPYRIVNIAS 345
Query: 269 GALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHML 328
G L AAKK DLE W P FRE+VSCSNC D+Q+ R+ +RY K N + +VH L
Sbjct: 346 GDLGACAAKKFDLEVWMPAQAKFREMVSCSNCTDWQAFRMKIRYVDRK--NNRRGYVHTL 403
Query: 329 NATACATTRVICAILETHQTETG-VRIPDCLRKFVPA 364
N+TA A+TR I AILE +Q E G V +P LRK++ A
Sbjct: 404 NSTAIASTRTITAILENYQREDGVVEVPKVLRKYLEA 440
>sp|C3NEQ7|SYS_SULIY Serine--tRNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 /
Yellowstone #1) GN=serS PE=3 SV=1
Length = 457
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 133/445 (29%), Positives = 196/445 (44%), Gaps = 115/445 (25%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 KEPVGDS-----------------------STLPGNHLHPSVPVSNNEDENGIVRTKGDT 107
K + STLP N + VP ++ N ++ G
Sbjct: 72 KIEESKNLLKILEDKEKELEKIEVERDRLLSTLP-NLVADDVPNGPDDSYNIPIKFWGKF 130
Query: 108 EVR-----------------------KKYSHVDLITMIDGV-DSEAGAIVAGGRGYFLKG 143
+V K H +++ + + ++ A +AG R Y+L
Sbjct: 131 KVYEGDVEEFLRQTKDANVNYEIIKWKPKGHAEMLEDVLHLGNTLKAAEIAGSRFYYLFN 190
Query: 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVG 203
V L L+ +A+ ++GYT + P+ +R EV+Q V L F + +YK+
Sbjct: 191 DIVWLDFALLLFAIDYITQQGYTLVLPPYMLRGEVIQSVIDLDTFKDAIYKI-------- 242
Query: 204 DSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE------DLTK 257
E +D YLIAT+E I A+ + + LP+++ G+S FR+E DL
Sbjct: 243 -------ENEDLYLIATAEHSIAAMFFKEEIEKDKLPLKFAGISPAFRKEAGAANKDLKG 295
Query: 258 ---------------------------------------SIAYRVVNIVSGALNHAAAKK 278
+ YR+VNI SG L AAKK
Sbjct: 296 IFRVHQFHKVEQFIFSTPEDSWKYHAELITNAESIFQQLELPYRIVNIASGDLGACAAKK 355
Query: 279 LDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRV 338
DLE W P FRE+VSCSNC D+Q+ R+ +RY K N K +VH LN+TA A+TR
Sbjct: 356 FDLEVWMPAQAKFREMVSCSNCTDWQAFRMKIRYVDRK--NNKRGYVHTLNSTAIASTRT 413
Query: 339 ICAILETHQTETG-VRIPDCLRKFV 362
I AILE +Q E G V +P LRK++
Sbjct: 414 ITAILENYQREDGVVEVPKVLRKYL 438
>sp|Q0W8S5|SYS_UNCMA Serine--tRNA ligase OS=Uncultured methanogenic archaeon RC-I
GN=serS PE=3 SV=1
Length = 425
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 131/429 (30%), Positives = 194/429 (45%), Gaps = 102/429 (23%)
Query: 16 PEKVRKNQKDR--FKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP 73
P+ VR + + R + + VD ++ D + R + K D + +N S+ I E KA +
Sbjct: 11 PDVVRADLRKRNDLEKLAWVDDLLAKDSQARAMQVKVDELRRRRNEISREINEARKAGK- 69
Query: 74 VGDSSTLPG-------------------------------NHLHPSVPVSNNEDENGIVR 102
D+S L N L SVPV ++ EN V+
Sbjct: 70 --DTSALMAEARDIPRQIKEAETEMEESRNKVHYYLMRLPNILDDSVPVGKDDTENVEVK 127
Query: 103 TKGDTEVRKKY---SHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSK 159
G+ V+K + +H L D E A VAG YFLKG V L + L ++A+
Sbjct: 128 RWGEP-VQKDFEIKNHGLLAVEHGWADFERAAKVAGAGFYFLKGNMVLLDMALQRFAMDL 186
Query: 160 WIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIA 219
+++G+TP+ P+ M ++ + V LA F++ +YK+ G DD YLIA
Sbjct: 187 LVKRGFTPVTPPYMMNRKSYEGVTDLADFEKVMYKIEG---------------DDMYLIA 231
Query: 220 TSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQ--------------------------- 252
TSE PI A+++ E LP+R G+S CFR+
Sbjct: 232 TSEHPIGAMYQGEIFEEKDLPLRLAGISPCFRREIGAHGLDTKGLFRVHQFHKIEQFVFC 291
Query: 253 --EDLTK----------------SIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFREL 294
ED K + Y VVNI +G + AAKK D+E W P ++E+
Sbjct: 292 KPEDSWKIHEEILANAEAVFQQLGLPYHVVNICTGDIGTVAAKKYDIEVWMPRENTYKEV 351
Query: 295 VSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG-VR 353
VSCSNC YQ+ RL ++ K K +VH LN+TA AT+R + AILE +Q + G V
Sbjct: 352 VSCSNCTAYQATRLNIKVRDPKDFESK-RYVHTLNSTAIATSRAMRAILENNQQKDGSVL 410
Query: 354 IPDCLRKFV 362
IP+ LR ++
Sbjct: 411 IPEVLRPYM 419
>sp|C3NGY7|SYS_SULIN Serine--tRNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 /
Yellowstone #2) GN=serS PE=3 SV=1
Length = 457
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 200/446 (44%), Gaps = 117/446 (26%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 KEPVGDSSTL----------------PGNHLHPSVP------VSNNEDENGIVRTK---- 104
K + +S L + L S+P V N D++ + K
Sbjct: 72 K--IEESKNLLKILEDKEKELEKIEVERDRLLSSLPNLVADDVPNGPDDSYNIPIKFWGK 129
Query: 105 -----GDTE--VR--------------KKYSHVDLITMIDGV-DSEAGAIVAGGRGYFLK 142
GD E +R K H +++ + + ++ A +AG R Y+L
Sbjct: 130 FKVYEGDVEEFLRQTKDANVNYEIIKWKPKGHAEMLEDVLHLGNTLKAAEIAGSRFYYLF 189
Query: 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKV 202
V L L+ +A+ ++GYT + P+ +R EV+Q V L F + +YK+
Sbjct: 190 NDIVWLDFALLLFAIDYITQQGYTLVLPPYMLRGEVIQSVIDLDTFKDAIYKI------- 242
Query: 203 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE------DLT 256
E +D YLIAT+E I A+ + + LP+++ G+S FR+E DL
Sbjct: 243 --------ENEDLYLIATAEHSIAAMFFKEEIEKDKLPLKFAGISPAFRKEAGAANKDLK 294
Query: 257 K---------------------------------------SIAYRVVNIVSGALNHAAAK 277
+ YR+VNI SG L AAK
Sbjct: 295 GIFRVHQFHKVEQFIFSTPEDSWKYHAELITNAESIFQQLELPYRIVNIASGDLGACAAK 354
Query: 278 KLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTR 337
K DLE W P FRE+VSCSNC D+Q+ R+ +RY K N K +VH LN+TA A+TR
Sbjct: 355 KFDLEVWMPAQAKFREMVSCSNCTDWQAFRMKIRYVDRK--NNKRGYVHTLNSTAIASTR 412
Query: 338 VICAILETHQTETG-VRIPDCLRKFV 362
I AILE +Q E G V +P LRK++
Sbjct: 413 TITAILENYQREDGVVEVPKVLRKYL 438
>sp|C3MQH9|SYS_SULIL Serine--tRNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 /
Lassen #1) GN=serS PE=3 SV=1
Length = 457
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 200/446 (44%), Gaps = 117/446 (26%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 KEPVGDSSTL----------------PGNHLHPSVP------VSNNEDENGIVRTK---- 104
K + +S L + L S+P V N D++ + K
Sbjct: 72 K--IEESKNLLKILEDKEKELEKIEVERDRLLSSLPNLVADDVPNGPDDSYNIPIKFWGK 129
Query: 105 -----GDTE--VR--------------KKYSHVDLITMIDGV-DSEAGAIVAGGRGYFLK 142
GD E +R K H +++ + + ++ A +AG R Y+L
Sbjct: 130 FKVYEGDVEEFLRQTKDANVNYEIIKWKPKGHAEMLEDVLHLGNTLKAAEIAGSRFYYLF 189
Query: 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKV 202
V L L+ +A+ ++GYT + P+ +R EV+Q V L F + +YK+
Sbjct: 190 NDIVWLDFALLLFAIDYITQQGYTLVLPPYMLRGEVIQSVIDLDTFKDAIYKI------- 242
Query: 203 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE------DLT 256
E +D YLIAT+E I A+ + + LP+++ G+S FR+E DL
Sbjct: 243 --------ENEDLYLIATAEHSIAAMFFKEEIEKDKLPLKFAGISPAFRKEAGAANKDLK 294
Query: 257 K---------------------------------------SIAYRVVNIVSGALNHAAAK 277
+ YR+VNI SG L AAK
Sbjct: 295 GIFRVHQFHKVEQFIFSTPEDSWKYHAELITNAESIFQQLELPYRIVNIASGDLGACAAK 354
Query: 278 KLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTR 337
K DLE W P FRE+VSCSNC D+Q+ R+ +RY K N K +VH LN+TA A+TR
Sbjct: 355 KFDLEVWMPAQAKFREMVSCSNCTDWQAFRMKIRYVDRK--NNKRGYVHTLNSTAIASTR 412
Query: 338 VICAILETHQTETG-VRIPDCLRKFV 362
I AILE +Q E G V +P LRK++
Sbjct: 413 TITAILENYQREDGVVEVPKVLRKYL 438
>sp|C4KHR4|SYS_SULIK Serine--tRNA ligase OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=serS PE=3 SV=1
Length = 457
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 200/446 (44%), Gaps = 117/446 (26%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 KEPVGDSSTL----------------PGNHLHPSVP------VSNNEDENGIVRTK---- 104
K + +S L + L S+P V N D++ + K
Sbjct: 72 K--IEESKNLLKILEDKEKELEKIEVERDRLLSSLPNLVADDVPNGPDDSYNIPIKFWGK 129
Query: 105 -----GDTE--VR--------------KKYSHVDLITMIDGV-DSEAGAIVAGGRGYFLK 142
GD E +R K H +++ + + ++ A +AG R Y+L
Sbjct: 130 FKVYEGDVEEFLRQTKDANVNYEIIKWKPKGHAEMLEDVLHLGNTLKAAEIAGSRFYYLF 189
Query: 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKV 202
V L L+ +A+ ++GYT + P+ +R EV+Q V L F + +YK+
Sbjct: 190 NDIVWLDFALLLFAIDYITQQGYTLVLPPYMLRGEVIQSVIDLDTFKDAIYKI------- 242
Query: 203 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE------DLT 256
E +D YLIAT+E I A+ + + LP+++ G+S FR+E DL
Sbjct: 243 --------ENEDLYLIATAEHSIAAMFFKEEIEKDKLPLKFAGISPAFRKEAGAANKDLK 294
Query: 257 K---------------------------------------SIAYRVVNIVSGALNHAAAK 277
+ YR+VNI SG L AAK
Sbjct: 295 GIFRVHQFHKVEQFIFSTPEDSWKYHAELITNAESIFQQLELPYRIVNIASGDLGACAAK 354
Query: 278 KLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTR 337
K DLE W P FRE+VSCSNC D+Q+ R+ +RY K N K +VH LN+TA A+TR
Sbjct: 355 KFDLEVWMPAQAKFREMVSCSNCTDWQAFRMKIRYVDRK--NNKRGYVHTLNSTAIASTR 412
Query: 338 VICAILETHQTETG-VRIPDCLRKFV 362
I AILE +Q E G V +P LRK++
Sbjct: 413 TITAILENYQREDGVVEVPKVLRKYL 438
>sp|C3N6A0|SYS_SULIA Serine--tRNA ligase OS=Sulfolobus islandicus (strain M.16.27)
GN=serS PE=3 SV=1
Length = 457
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 200/446 (44%), Gaps = 117/446 (26%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 KEPVGDSSTL----------------PGNHLHPSVP------VSNNEDENGIVRTK---- 104
K + +S L + L S+P V N D++ + K
Sbjct: 72 K--IEESKNLLKILEDKEKELEKIEVERDRLLSSLPNLVADDVPNGPDDSYNIPIKFWGK 129
Query: 105 -----GDTE--VR--------------KKYSHVDLITMIDGV-DSEAGAIVAGGRGYFLK 142
GD E +R K H +++ + + ++ A +AG R Y+L
Sbjct: 130 FKVYEGDVEEFLRQTKDANVNYEIIKWKPKGHAEMLEDVLHLGNTLKAAEIAGSRFYYLF 189
Query: 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKV 202
V L L+ +A+ ++GYT + P+ +R EV+Q V L F + +YK+
Sbjct: 190 NDIVWLDFALLLFAIDYITQQGYTLVLPPYMLRGEVIQSVIDLDTFKDAIYKI------- 242
Query: 203 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE------DLT 256
E +D YLIAT+E I A+ + + LP+++ G+S FR+E DL
Sbjct: 243 --------ENEDLYLIATAEHSIAAMFFKEEIEKDKLPLKFAGISPAFRKEAGAANKDLK 294
Query: 257 K---------------------------------------SIAYRVVNIVSGALNHAAAK 277
+ YR+VNI SG L AAK
Sbjct: 295 GIFRVHQFHKVEQFIFSTPEDSWKYHAELITNAESIFQQLELPYRIVNIASGDLGACAAK 354
Query: 278 KLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTR 337
K DLE W P FRE+VSCSNC D+Q+ R+ +RY K N K +VH LN+TA A+TR
Sbjct: 355 KFDLEVWMPAQAKFREMVSCSNCTDWQAFRMKIRYVDRK--NNKRGYVHTLNSTAIASTR 412
Query: 338 VICAILETHQTETG-VRIPDCLRKFV 362
I AILE +Q E G V +P LRK++
Sbjct: 413 TITAILENYQREDGVVEVPKVLRKYL 438
>sp|C3MW57|SYS_SULIM Serine--tRNA ligase OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=serS PE=3 SV=1
Length = 457
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 117/446 (26%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 KEPVGDSSTL----------------PGNHLHPSVP------VSNNEDENGIVRTK---- 104
K + +S L + L S+P V N D++ + K
Sbjct: 72 K--IEESKNLLKILEDKEKELEKIEVERDRLLSSLPNLVADDVPNGPDDSYNIPIKFWGK 129
Query: 105 -----GDTE--VR--------------KKYSHVDLITMIDGV-DSEAGAIVAGGRGYFLK 142
GD E +R K H +++ + + ++ A +AG R Y+L
Sbjct: 130 FKVYEGDVEEFLRQTKDANVNYEIIKWKPKGHAEMLEDVLHLGNTLKAAEIAGSRFYYLF 189
Query: 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKV 202
V L L+ +A+ ++GYT + P+ +R EV+Q V L F + +YK+
Sbjct: 190 NDIVWLDFALLLFAIDYITQQGYTLVLPPYMLRGEVIQSVIDLDTFKDAIYKI------- 242
Query: 203 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE------DLT 256
E +D YLIAT+E + A+ + + LP+++ G+S FR+E DL
Sbjct: 243 --------ENEDLYLIATAEHSVAAMFFKEEIEKDKLPLKFAGISPAFRKEAGAANKDLK 294
Query: 257 K---------------------------------------SIAYRVVNIVSGALNHAAAK 277
+ YR+VNI SG L AAK
Sbjct: 295 GIFRVHQFHKVEQFIFSTPEDSWKYHAELITNAESIFQQLELPYRIVNIASGDLGACAAK 354
Query: 278 KLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTR 337
K DLE W P FRE+VSCSNC D+Q+ R+ +RY K N K +VH LN+TA A+TR
Sbjct: 355 KFDLEVWMPAQAKFREMVSCSNCTDWQAFRMKIRYVDRK--NNKRGYVHTLNSTAIASTR 412
Query: 338 VICAILETHQTETG-VRIPDCLRKFV 362
I AILE +Q E G V +P LRK++
Sbjct: 413 TITAILENYQREDGVVEVPKVLRKYL 438
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,384,393
Number of Sequences: 539616
Number of extensions: 7133313
Number of successful extensions: 24569
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 20543
Number of HSP's gapped (non-prelim): 1762
length of query: 399
length of database: 191,569,459
effective HSP length: 120
effective length of query: 279
effective length of database: 126,815,539
effective search space: 35381535381
effective search space used: 35381535381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)