Query psy10034
Match_columns 399
No_of_seqs 216 out of 1821
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:10:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02678 seryl-tRNA synthetase 100.0 2E-103 4E-108 801.5 30.0 362 2-381 1-438 (448)
2 COG0172 SerS Seryl-tRNA synthe 100.0 1.3E-99 3E-104 761.3 29.4 348 2-375 1-427 (429)
3 PLN02320 seryl-tRNA synthetase 100.0 2.4E-98 5E-103 767.8 29.2 342 2-365 66-494 (502)
4 KOG2509|consensus 100.0 4.8E-96 1E-100 722.3 20.2 366 1-384 1-450 (455)
5 PRK05431 seryl-tRNA synthetase 100.0 1.3E-94 2.9E-99 738.1 30.7 342 2-365 1-419 (425)
6 TIGR00414 serS seryl-tRNA synt 100.0 5E-92 1.1E-96 717.8 30.4 340 2-362 1-418 (418)
7 cd00770 SerRS_core Seryl-tRNA 100.0 5.4E-67 1.2E-71 513.0 22.0 249 97-362 1-297 (297)
8 PRK00960 seryl-tRNA synthetase 100.0 1.6E-55 3.4E-60 454.5 20.8 268 82-366 165-508 (517)
9 cd00779 ProRS_core_prok Prolyl 100.0 4.1E-50 9E-55 385.7 18.8 208 114-345 6-255 (255)
10 cd00778 ProRS_core_arch_euk Pr 100.0 8.8E-47 1.9E-51 363.8 17.0 210 116-344 7-260 (261)
11 cd00772 ProRS_core Prolyl-tRNA 100.0 2E-46 4.3E-51 361.8 19.0 213 114-345 6-264 (264)
12 cd00771 ThrRS_core Threonyl-tR 100.0 4.5E-42 9.8E-47 337.0 14.3 220 114-360 1-298 (298)
13 TIGR00415 serS_MJ seryl-tRNA s 100.0 4.7E-41 1E-45 343.0 20.6 252 99-365 180-507 (520)
14 PRK08661 prolyl-tRNA synthetas 100.0 4.2E-41 9.1E-46 349.2 19.5 234 113-365 16-292 (477)
15 TIGR00409 proS_fam_II prolyl-t 100.0 1.1E-39 2.4E-44 344.0 20.0 172 111-306 19-232 (568)
16 TIGR00408 proS_fam_I prolyl-tR 100.0 1.7E-39 3.6E-44 336.7 19.2 231 116-365 13-287 (472)
17 PLN02837 threonine-tRNA ligase 100.0 4.1E-39 8.9E-44 343.3 20.7 245 94-363 184-519 (614)
18 PRK09194 prolyl-tRNA synthetas 100.0 1.1E-38 2.4E-43 337.6 20.8 168 111-301 19-228 (565)
19 PRK12325 prolyl-tRNA synthetas 100.0 5.8E-38 1.3E-42 322.9 19.9 230 111-363 19-348 (439)
20 PRK03991 threonyl-tRNA synthet 100.0 2.3E-37 5.1E-42 328.2 19.1 230 112-364 196-503 (613)
21 PRK14799 thrS threonyl-tRNA sy 100.0 4.5E-37 9.8E-42 321.9 19.5 245 94-363 105-441 (545)
22 KOG2324|consensus 100.0 1E-36 2.2E-41 294.5 18.5 223 116-365 28-333 (457)
23 COG0442 ProS Prolyl-tRNA synth 100.0 3.4E-35 7.3E-40 302.3 10.8 231 109-365 17-290 (500)
24 PLN02908 threonyl-tRNA synthet 100.0 1.5E-33 3.1E-38 304.3 21.1 243 95-363 260-592 (686)
25 KOG1637|consensus 100.0 2.9E-34 6.3E-39 285.0 9.5 241 111-389 161-481 (560)
26 PRK12444 threonyl-tRNA synthet 100.0 5.4E-32 1.2E-36 290.6 20.9 244 94-363 212-544 (639)
27 COG0441 ThrS Threonyl-tRNA syn 100.0 1.4E-32 3.1E-37 287.6 15.6 248 94-365 157-492 (589)
28 TIGR00418 thrS threonyl-tRNA s 100.0 9.1E-31 2E-35 277.5 22.0 229 111-363 168-473 (563)
29 PRK12305 thrS threonyl-tRNA sy 100.0 7.3E-32 1.6E-36 286.5 13.4 227 111-363 174-479 (575)
30 cd00670 Gly_His_Pro_Ser_Thr_tR 100.0 1.8E-29 3.9E-34 238.1 15.5 186 145-343 1-235 (235)
31 PF00587 tRNA-synt_2b: tRNA sy 99.9 3.1E-28 6.7E-33 220.5 8.9 129 148-288 1-173 (173)
32 PRK04173 glycyl-tRNA synthetas 99.9 3.9E-27 8.4E-32 243.3 16.1 248 116-365 8-368 (456)
33 PRK00413 thrS threonyl-tRNA sy 99.9 8.6E-26 1.9E-30 242.8 20.0 229 111-363 239-542 (638)
34 KOG4163|consensus 99.8 7.8E-20 1.7E-24 180.9 7.6 231 116-363 73-347 (551)
35 TIGR00389 glyS_dimeric glycyl- 99.6 1.9E-14 4.2E-19 150.7 16.7 186 116-303 7-323 (551)
36 cd00774 GlyRS-like_core Glycyl 99.6 8.2E-16 1.8E-20 147.9 3.9 165 116-304 2-213 (254)
37 PF02403 Seryl_tRNA_N: Seryl-t 99.6 7.3E-15 1.6E-19 123.3 7.2 69 2-74 1-69 (108)
38 cd00768 class_II_aaRS-like_cor 99.5 3.2E-14 7E-19 130.8 11.4 167 149-338 2-211 (211)
39 PRK07080 hypothetical protein; 99.5 4.4E-13 9.6E-18 130.4 15.4 232 114-361 20-313 (317)
40 PRK14894 glycyl-tRNA synthetas 99.5 1.1E-12 2.3E-17 134.9 16.0 226 116-345 10-331 (539)
41 PLN02734 glycyl-tRNA synthetas 99.4 5E-12 1.1E-16 134.8 13.4 187 115-303 78-422 (684)
42 COG0423 GRS1 Glycyl-tRNA synth 99.2 5.4E-11 1.2E-15 122.0 11.8 258 116-382 10-472 (558)
43 cd00773 HisRS-like_core Class 99.2 4.6E-11 9.9E-16 115.2 8.7 124 146-284 2-125 (261)
44 PRK00037 hisS histidyl-tRNA sy 99.1 4E-10 8.6E-15 115.4 10.1 105 135-255 7-113 (412)
45 CHL00201 syh histidine-tRNA sy 99.0 6.4E-10 1.4E-14 114.9 9.6 107 136-254 8-116 (430)
46 TIGR00442 hisS histidyl-tRNA s 99.0 1.9E-09 4E-14 110.0 9.5 107 136-255 4-112 (397)
47 PRK09537 pylS pyrolysyl-tRNA s 98.7 3.2E-08 7E-13 100.8 8.4 92 143-255 204-297 (417)
48 PLN02530 histidine-tRNA ligase 98.7 7.7E-08 1.7E-12 101.0 9.2 105 136-255 74-179 (487)
49 TIGR00443 hisZ_biosyn_reg ATP 98.6 7.2E-08 1.6E-12 95.6 8.2 100 141-255 3-102 (314)
50 PRK12420 histidyl-tRNA synthet 98.6 1.1E-07 2.4E-12 98.0 9.7 106 136-255 8-114 (423)
51 TIGR02367 PylS pyrrolysyl-tRNA 98.3 3.6E-06 7.9E-11 86.1 9.5 90 149-255 242-333 (453)
52 COG0124 HisS Histidyl-tRNA syn 98.1 1.4E-05 3E-10 82.3 10.1 106 136-254 8-115 (429)
53 PRK12292 hisZ ATP phosphoribos 98.0 1.7E-05 3.8E-10 81.0 7.8 105 136-254 7-112 (391)
54 PF13393 tRNA-synt_His: Histid 97.9 2.5E-05 5.4E-10 77.0 7.6 103 137-255 1-103 (311)
55 PRK12293 hisZ ATP phosphoribos 97.9 5.5E-05 1.2E-09 74.1 9.0 102 136-255 9-110 (281)
56 PLN02972 Histidyl-tRNA synthet 97.6 0.00018 3.9E-09 78.6 8.9 102 135-255 330-432 (763)
57 KOG2298|consensus 97.6 8.8E-05 1.9E-09 75.8 6.0 58 136-193 36-94 (599)
58 PRK12421 ATP phosphoribosyltra 97.6 0.00019 4.2E-09 73.4 8.6 104 136-254 11-115 (392)
59 PF01409 tRNA-synt_2d: tRNA sy 97.4 0.0013 2.9E-08 63.2 11.2 170 149-343 19-228 (247)
60 PRK12295 hisZ ATP phosphoribos 97.2 0.0012 2.6E-08 67.2 9.0 88 151-255 9-97 (373)
61 COG0016 PheS Phenylalanyl-tRNA 96.8 0.013 2.8E-07 58.6 11.0 163 144-341 108-315 (335)
62 PRK09350 poxB regulator PoxA; 96.6 0.0039 8.5E-08 61.8 6.4 90 145-255 4-93 (306)
63 COG0442 ProS Prolyl-tRNA synth 96.3 0.0051 1.1E-07 64.6 5.1 46 319-365 366-411 (500)
64 PF00152 tRNA-synt_2: tRNA syn 96.2 0.01 2.2E-07 59.4 6.5 88 145-255 21-108 (335)
65 cd00669 Asp_Lys_Asn_RS_core As 96.2 0.016 3.5E-07 56.5 7.6 82 147-254 2-83 (269)
66 KOG0555|consensus 96.1 0.012 2.7E-07 59.3 6.4 35 147-181 244-278 (545)
67 COG3705 HisZ ATP phosphoribosy 95.9 0.015 3.3E-07 59.3 6.1 128 139-284 10-138 (390)
68 cd00775 LysRS_core Lys_tRNA sy 95.8 0.02 4.3E-07 57.4 6.5 85 145-255 7-91 (329)
69 PTZ00326 phenylalanyl-tRNA syn 95.7 0.14 3E-06 53.9 12.7 178 149-342 231-478 (494)
70 PRK06462 asparagine synthetase 95.7 0.019 4.1E-07 57.7 6.0 87 144-255 28-117 (335)
71 PLN02850 aspartate-tRNA ligase 95.6 0.028 6E-07 59.9 7.0 84 144-255 223-306 (530)
72 TIGR00458 aspS_arch aspartyl-t 95.6 0.031 6.7E-07 58.0 7.3 84 144-255 131-214 (428)
73 PRK12294 hisZ ATP phosphoribos 95.6 0.054 1.2E-06 52.9 8.4 95 149-260 10-106 (272)
74 PRK05159 aspC aspartyl-tRNA sy 95.5 0.049 1.1E-06 56.7 8.3 84 144-255 134-217 (437)
75 COG0173 AspS Aspartyl-tRNA syn 95.5 0.036 7.7E-07 58.4 7.1 86 144-255 139-224 (585)
76 PRK00488 pheS phenylalanyl-tRN 95.5 0.25 5.4E-06 49.7 12.8 85 149-254 110-199 (339)
77 PRK03932 asnC asparaginyl-tRNA 95.4 0.042 9.2E-07 57.4 7.5 93 143-255 130-222 (450)
78 cd00776 AsxRS_core Asx tRNA sy 95.4 0.027 5.9E-07 56.2 5.7 83 144-255 22-104 (322)
79 TIGR00462 genX lysyl-tRNA synt 95.3 0.026 5.7E-07 55.9 5.3 87 147-255 2-88 (304)
80 PTZ00401 aspartyl-tRNA synthet 95.0 0.047 1E-06 58.4 6.5 84 144-255 211-294 (550)
81 cd00496 PheRS_alpha_core Pheny 95.0 0.13 2.8E-06 48.4 8.8 86 150-254 4-94 (218)
82 PRK12820 bifunctional aspartyl 94.7 0.11 2.5E-06 56.9 8.6 86 144-255 154-239 (706)
83 PRK12445 lysyl-tRNA synthetase 94.6 0.063 1.4E-06 56.9 6.0 86 144-255 182-267 (505)
84 TIGR00499 lysS_bact lysyl-tRNA 94.5 0.063 1.4E-06 56.8 6.0 86 144-255 170-255 (496)
85 PRK00476 aspS aspartyl-tRNA sy 94.5 0.094 2E-06 56.6 7.3 85 144-255 139-224 (588)
86 TIGR00459 aspS_bact aspartyl-t 94.5 0.11 2.3E-06 56.1 7.6 85 144-255 136-221 (583)
87 PTZ00417 lysine-tRNA ligase; P 94.4 0.06 1.3E-06 57.9 5.6 86 144-255 251-336 (585)
88 PRK00484 lysS lysyl-tRNA synth 94.4 0.068 1.5E-06 56.5 5.9 86 144-255 170-255 (491)
89 PLN02502 lysyl-tRNA synthetase 94.4 0.087 1.9E-06 56.4 6.7 86 144-255 227-312 (553)
90 PRK04172 pheS phenylalanyl-tRN 94.3 0.071 1.5E-06 56.3 5.7 111 140-254 226-364 (489)
91 TIGR00457 asnS asparaginyl-tRN 94.3 0.076 1.6E-06 55.6 5.8 92 144-255 134-225 (453)
92 PTZ00385 lysyl-tRNA synthetase 94.1 0.14 3.1E-06 55.6 7.7 86 144-255 231-316 (659)
93 TIGR00468 pheS phenylalanyl-tR 94.0 0.22 4.7E-06 49.2 8.3 84 151-254 76-164 (294)
94 PLN02853 Probable phenylalanyl 93.7 0.5 1.1E-05 49.7 10.5 195 150-381 224-487 (492)
95 PTZ00425 asparagine-tRNA ligas 93.7 0.2 4.3E-06 53.9 7.8 37 142-178 211-247 (586)
96 PLN02903 aminoacyl-tRNA ligase 93.5 0.19 4.1E-06 54.7 7.3 85 144-255 201-287 (652)
97 cd00777 AspRS_core Asp tRNA sy 93.1 0.12 2.6E-06 50.7 4.5 83 147-255 2-84 (280)
98 COG2269 Truncated, possibly in 93.0 0.1 2.2E-06 50.9 3.8 87 147-254 17-103 (322)
99 COG0017 AsnS Aspartyl/asparagi 93.0 0.16 3.4E-06 52.5 5.4 83 144-255 132-214 (435)
100 KOG1936|consensus 92.9 0.33 7.2E-06 49.8 7.4 93 140-254 68-164 (518)
101 PLN02532 asparagine-tRNA synth 92.5 0.21 4.6E-06 54.1 5.9 36 143-178 232-267 (633)
102 KOG2411|consensus 92.1 0.19 4.2E-06 52.3 4.7 85 145-255 177-262 (628)
103 PLN02221 asparaginyl-tRNA synt 92.1 0.41 8.9E-06 51.5 7.3 35 144-178 169-203 (572)
104 PLN02603 asparaginyl-tRNA synt 92.1 0.17 3.7E-06 54.3 4.5 35 144-178 224-258 (565)
105 PRK02983 lysS lysyl-tRNA synth 91.3 0.21 4.6E-06 57.6 4.4 86 144-255 768-853 (1094)
106 KOG0556|consensus 90.8 0.27 5.9E-06 50.1 4.1 81 147-255 229-309 (533)
107 COG2024 Phenylalanyl-tRNA synt 88.7 0.47 1E-05 48.0 3.9 23 233-255 200-222 (536)
108 PRK09616 pheT phenylalanyl-tRN 86.4 2.9 6.3E-05 44.9 8.6 90 149-254 361-452 (552)
109 cd00769 PheRS_beta_core Phenyl 85.0 1.4 3E-05 40.6 4.7 88 151-253 4-91 (198)
110 KOG0554|consensus 84.0 2.9 6.3E-05 42.7 6.7 95 140-255 126-220 (446)
111 cd02426 Pol_gamma_b_Cterm C-te 83.3 0.61 1.3E-05 40.3 1.5 23 343-365 10-32 (128)
112 TIGR00470 sepS O-phosphoseryl- 82.9 2.4 5.2E-05 44.5 5.8 59 236-299 203-302 (533)
113 KOG1885|consensus 78.8 1.4 3E-05 45.9 2.4 83 146-254 225-307 (560)
114 COG1190 LysU Lysyl-tRNA synthe 77.6 4.4 9.5E-05 42.7 5.7 83 146-254 180-262 (502)
115 TIGR00471 pheT_arch phenylalan 62.4 19 0.00042 38.7 6.7 88 149-252 364-452 (551)
116 PRK14127 cell division protein 53.7 36 0.00078 28.7 5.5 61 1-69 4-65 (109)
117 PLN02265 probable phenylalanyl 53.4 22 0.00048 38.7 5.3 89 149-251 399-488 (597)
118 KOG3863|consensus 39.1 42 0.00091 36.4 4.6 37 33-69 510-546 (604)
119 cd04766 HTH_HspR Helix-Turn-He 38.4 1.1E+02 0.0024 24.3 6.0 31 26-56 57-87 (91)
120 PRK14938 Ser-tRNA(Thr) hydrola 37.4 25 0.00055 36.0 2.6 29 335-363 249-277 (387)
121 PF04977 DivIC: Septum formati 35.9 1.1E+02 0.0024 23.1 5.6 36 33-68 16-51 (80)
122 KOG4196|consensus 34.7 1.2E+02 0.0025 26.5 5.7 35 33-67 73-107 (135)
123 PHA03386 P10 fibrous body prot 32.4 44 0.00096 27.3 2.7 61 33-93 11-76 (94)
124 PRK00888 ftsB cell division pr 31.4 1.4E+02 0.003 24.8 5.7 37 33-69 26-62 (105)
125 PF14257 DUF4349: Domain of un 28.1 99 0.0021 29.6 4.9 35 32-66 160-194 (262)
126 COG0072 PheT Phenylalanyl-tRNA 27.8 1E+02 0.0022 34.0 5.4 91 147-253 351-442 (650)
127 cd01202 FRS2 Fibroblast growth 27.5 73 0.0016 26.5 3.2 49 110-158 44-94 (102)
128 PF13590 DUF4136: Domain of un 27.2 1.1E+02 0.0023 26.1 4.6 28 147-174 35-63 (151)
129 PF10752 DUF2533: Protein of u 26.6 2.2E+02 0.0048 22.8 5.6 41 31-71 16-64 (84)
130 PF05278 PEARLI-4: Arabidopsis 26.0 2.2E+02 0.0048 27.9 6.8 20 3-26 166-185 (269)
131 TIGR00472 pheT_bact phenylalan 26.0 1.2E+02 0.0026 34.3 5.7 84 154-251 498-581 (798)
132 cd01279 HTH_HspR-like Helix-Tu 25.2 2.1E+02 0.0045 23.2 5.6 31 26-56 57-87 (98)
133 CHL00192 syfB phenylalanyl-tRN 25.2 90 0.0019 34.7 4.5 83 149-252 400-482 (704)
134 PF11285 DUF3086: Protein of u 25.2 1.4E+02 0.0031 29.0 5.2 34 34-67 4-37 (283)
135 PRK00629 pheT phenylalanyl-tRN 24.9 1.1E+02 0.0023 34.5 5.1 88 149-252 489-576 (791)
136 COG5185 HEC1 Protein involved 24.8 2.4E+02 0.0052 29.9 7.0 57 5-68 346-402 (622)
137 cd01611 GABARAP Ubiquitin doma 24.7 1.7E+02 0.0037 24.6 5.1 31 320-351 69-99 (112)
138 TIGR01061 parC_Gpos DNA topois 24.4 3.1E+02 0.0068 30.8 8.5 60 5-67 386-446 (738)
139 PF05103 DivIVA: DivIVA protei 22.8 49 0.0011 27.9 1.5 42 26-67 16-58 (131)
140 cd00824 PTBI IRS-like phosphot 21.2 1.3E+02 0.0027 25.2 3.6 42 121-162 57-100 (104)
141 PHA02047 phage lambda Rz1-like 21.0 3.3E+02 0.0071 22.5 5.8 36 34-69 41-76 (101)
142 cd01203 DOK_PTB Downstream of 21.0 1.9E+02 0.004 24.3 4.5 43 116-158 52-96 (104)
143 PRK12758 DNA topoisomerase IV 20.8 3.5E+02 0.0076 30.9 7.9 58 5-65 375-442 (869)
144 KOG4196|consensus 20.3 4.1E+02 0.0088 23.2 6.5 43 24-69 40-95 (135)
145 PLN02788 phenylalanine-tRNA sy 20.3 3.8E+02 0.0082 27.9 7.5 13 242-254 149-161 (402)
146 cd04775 HTH_Cfa-like Helix-Tur 20.0 3.2E+02 0.007 22.2 5.8 43 23-65 53-95 (102)
No 1
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=1.9e-103 Score=801.50 Aligned_cols=362 Identities=56% Similarity=0.899 Sum_probs=332.4
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC----
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDS---- 77 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~~~~---- 77 (399)
|||+++||++|+.|+|.|++++++|+.+.+.||+|+++|++||++++++++|+++||++||+|+++++.+++..+.
T Consensus 1 mlD~k~ir~~~~~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~ 80 (448)
T PLN02678 1 MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAET 80 (448)
T ss_pred CCCHHHHhcccccCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 9999999988877999999999999987666999999999999999999999999999999999866555432110
Q ss_pred ------------------CCC------CCCCCCCCCCCCCCcCCCceeEeecCCccC-ccCCHHHHHHHcCCcccccccc
Q psy10034 78 ------------------STL------PGNHLHPSVPVSNNEDENGIVRTKGDTEVR-KKYSHVDLITMIDGVDSEAGAI 132 (399)
Q Consensus 78 ------------------~~l------~PN~~~~~vP~g~~e~~n~~~~~~g~~~~~-~~~dH~el~~~l~l~d~~~~~k 132 (399)
++| |||++||+||+|.||++|++++.||.++.+ +++||++||+++|||||+++++
T Consensus 81 ~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g~~~~~~~~~dH~~Lg~~l~l~d~~~~~~ 160 (448)
T PLN02678 81 KELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWGEKRQEPKLKNHVDLVELLGIVDTERGAD 160 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEcCCCCCCCCCCHHHHHhhccCccchhhhh
Confidence 011 899999999999999999999999998754 5789999999999999999999
Q ss_pred ccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCC
Q psy10034 133 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDEL 212 (399)
Q Consensus 133 ~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~ 212 (399)
++|++||||.|.||+|++||++|+++.+.++||++|.+|+|++.++|++||||++|.++||++.+. +
T Consensus 161 vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~-------------~ 227 (448)
T PLN02678 161 VAGGRGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGE-------------G 227 (448)
T ss_pred hcCceeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCC-------------C
Confidence 999999999999999999999999999999999999999999999999999999999999999743 3
Q ss_pred CCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-------------------------------------
Q psy10034 213 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------------------------------- 255 (399)
Q Consensus 213 ~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------------------------------- 255 (399)
+++||+||||+++|++|++++++|++|||||+++|+|||.|+|
T Consensus 228 ~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~ 307 (448)
T PLN02678 228 DDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEE 307 (448)
T ss_pred CceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHH
Confidence 5789999999999999999999999999999999999999996
Q ss_pred ----------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEE
Q psy10034 256 ----------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFV 325 (399)
Q Consensus 256 ----------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~v 325 (399)
.||||||+|.+||||||++++++||||||+|++++|+||+|||||+||||||++|||++..+.++++.||
T Consensus 308 ~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~v 387 (448)
T PLN02678 308 MLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYV 387 (448)
T ss_pred HHHHHHHHHHHcCCCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCceeE
Confidence 6999999999999999999999999999999999999999999999999999999999642223568999
Q ss_pred EcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCCcccccCccCCCC
Q psy10034 326 HMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPI 381 (399)
Q Consensus 326 Htlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~~~~~~~~ 381 (399)
||+||||||++|+|+|||||||++|||.||++|+|||+|. + +|++.+..|.
T Consensus 388 HTLNgt~lA~~R~l~AiLEn~Q~~dgi~iP~vL~pym~g~--~---~i~~~~~~~~ 438 (448)
T PLN02678 388 HLLNSTLTATERTLCCILENYQTEDGVRVPEVLQPFMGGI--E---FLPFKKKPPA 438 (448)
T ss_pred EecCCchhHHHHHHHHHHHhCcCCCCeECChhhhhhcCCC--c---eecCCCCccc
Confidence 9999999999999999999999999999999999999987 4 7887555543
No 2
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-99 Score=761.25 Aligned_cols=348 Identities=41% Similarity=0.641 Sum_probs=325.8
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CC----C
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP-VG----D 76 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~-~~----~ 76 (399)
|||+++||+ |||.|++++.+|+.+..++|++++||.+||+++.+++.|+++||++|++|++.++.+++ .. +
T Consensus 1 mld~k~ir~----n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e 76 (429)
T COG0172 1 MLDLKLIRE----NPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAE 76 (429)
T ss_pred CchHHHhhh----CHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 999999999 99999999999987667799999999999999999999999999999999976655442 10 0
Q ss_pred -------C-----------CCC------CCCCCCCCCCCCCCcCCCceeEeecCCc----cCccCCHHHHHHHcCCcccc
Q psy10034 77 -------S-----------STL------PGNHLHPSVPVSNNEDENGIVRTKGDTE----VRKKYSHVDLITMIDGVDSE 128 (399)
Q Consensus 77 -------~-----------~~l------~PN~~~~~vP~g~~e~~n~~~~~~g~~~----~~~~~dH~el~~~l~l~d~~ 128 (399)
. .++ +||++|++||+|.||++|+++++||.++ .|.+++|++||+.+|++||+
T Consensus 77 ~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~VPvg~de~~n~~vr~~g~~~~~~~~f~pk~H~~lge~l~~~Df~ 156 (429)
T COG0172 77 VKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDEDDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFE 156 (429)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccccCcCCCcccceEEEEEecCccccccCCcchHHHHhhhcCcchhh
Confidence 0 011 7999999999999999999999999985 57899999999999999999
Q ss_pred ccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCC
Q psy10034 129 AGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPE 208 (399)
Q Consensus 129 ~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~ 208 (399)
+++|++|+|||||+|.||+|++||++||+|++.++||++|.+|+|++.++|.+||+||+|.++||++.+
T Consensus 157 ~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~----------- 225 (429)
T COG0172 157 RAAKVSGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVED----------- 225 (429)
T ss_pred hhcccCCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecC-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---------------------------------
Q psy10034 209 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--------------------------------- 255 (399)
Q Consensus 209 ~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--------------------------------- 255 (399)
.+|||+||||+|++++|++++++..+||++|+++|+|||+|||
T Consensus 226 ----~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~ 301 (429)
T COG0172 226 ----PDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEEL 301 (429)
T ss_pred ----CCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHH
Confidence 3799999999999999999999999999999999999999998
Q ss_pred ------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCcee
Q psy10034 256 ------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIE 323 (399)
Q Consensus 256 ------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~ 323 (399)
.|+||||+|.+||||||++|+++||+|||+|+++.|+||+|||||+||||||++|||+... .++..
T Consensus 302 E~m~~~ae~il~~LeLPyRvv~lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~DfQaRR~~~Ryr~~~--~~k~~ 379 (429)
T COG0172 302 EEMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDFQARRLNIRYRDKE--EGKRE 379 (429)
T ss_pred HHHHHHHHHHHHHhCCCceEeeeccCCcCCcccCceeEEEEecCCCCceeeeeeeccccHHHHHHhccccccc--CCCcE
Confidence 8999999999999999999999999999999999999999999999999999999998742 46779
Q ss_pred EEEcccccccchHHHHHHHHHhcCCCCc-eecCcccccccCCcccCCcccccC
Q psy10034 324 FVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFVPAVYVNEAGEIPF 375 (399)
Q Consensus 324 ~vHtlngt~~ai~R~i~allE~~q~~~g-i~iP~~L~py~~~~~~~~~~~~~~ 375 (399)
||||+||||+|++|+++|||||||++|| |.||++|+|||||. + .|++
T Consensus 380 ~vhTLNGsglA~~R~l~AilENyq~~dG~v~IPevL~~y~gg~--~---~i~~ 427 (429)
T COG0172 380 FVHTLNGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPYMGGL--E---IIPK 427 (429)
T ss_pred EEEeccchHHHHHHHHHHHHHcccCCCCCeeccHHHHhhCCcc--e---ecCC
Confidence 9999999999999999999999999999 99999999999997 4 6665
No 3
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=2.4e-98 Score=767.75 Aligned_cols=342 Identities=33% Similarity=0.554 Sum_probs=314.4
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-----
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----- 76 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~~~----- 76 (399)
|||+++||+ |+|.|++++++|+.+.+ ||+|+++|++||++++++++|+++||++||+|++ ++.+++.++
T Consensus 66 mlD~k~ir~----n~~~v~~~l~~R~~~~~-vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~ 139 (502)
T PLN02320 66 AIDFKWIRD----NKEAVAINIRNRNSNAN-LELVLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEG 139 (502)
T ss_pred ccCHHHHHh----CHHHHHHHHHhcCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHH
Confidence 999999999 99999999999998766 9999999999999999999999999999999987 322222110
Q ss_pred ------C-----------CC------CCCCCCCCCCCCCCCcCCCceeEeecCCcc--CccCCHHHHHHHcCCccccccc
Q psy10034 77 ------S-----------ST------LPGNHLHPSVPVSNNEDENGIVRTKGDTEV--RKKYSHVDLITMIDGVDSEAGA 131 (399)
Q Consensus 77 ------~-----------~~------l~PN~~~~~vP~g~~e~~n~~~~~~g~~~~--~~~~dH~el~~~l~l~d~~~~~ 131 (399)
. ++ .|||++||+||+|.|| +++++++||+++. |+++||++||+++|||||++++
T Consensus 140 k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G~de-~~~~~~~~G~~~~f~f~~rdH~eLg~~L~Lfdf~~aa 218 (502)
T PLN02320 140 KNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGED-SSAVRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAA 218 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCC-CCeEEEecCCCCCCCCCCcCHHHHHHHcCCccccchh
Confidence 0 11 1899999999999887 4588999999884 6799999999999999999999
Q ss_pred cccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccc-cceEEeccCccCCCCCCCCC
Q psy10034 132 IVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE-ELYKVIGKGEKVGDSAPEKD 210 (399)
Q Consensus 132 k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~-~~f~i~~~~~~~~~~~~~~~ 210 (399)
+++|++||||.+.|++|++||++|+++.+.++||++|++|+|++.++|++|||++.|.+ ++|.|++
T Consensus 219 kvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie~------------- 285 (502)
T PLN02320 219 EVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDG------------- 285 (502)
T ss_pred hcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEECC-------------
Confidence 99999999999999999999999999999999999999999999999999999999988 8998863
Q ss_pred CCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-----------------------------------
Q psy10034 211 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL----------------------------------- 255 (399)
Q Consensus 211 ~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g----------------------------------- 255 (399)
+++||+||+|+|++++|++++++|++||+||+++|+|||.|+|
T Consensus 286 --ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ 363 (502)
T PLN02320 286 --SDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEE 363 (502)
T ss_pred --CceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999987
Q ss_pred ----------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccC-------CC
Q psy10034 256 ----------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK-------KM 318 (399)
Q Consensus 256 ----------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~-------~~ 318 (399)
.||||||+|.+|+||||++++++||||||||++++|+||+|||||+||||||++|||++.+ +.
T Consensus 364 ll~~~e~i~~~LgLpyrvv~l~tgDLg~~a~kkyDiEvW~P~~~~y~EvsS~SNc~DfQaRRl~iryr~~~~~~~~~~~~ 443 (502)
T PLN02320 364 LIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCTDYQSRRLGIRYRPSEPPQTNPKKG 443 (502)
T ss_pred HHHHHHHHHHHcCCCeEEEEecCCccchhhhheEEEEEEecCCCcEEEEeeecchhhHhhhcccceeccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999631 11
Q ss_pred C---CceeEEEcccccccchHHHHHHHHHhcCCCCc-eecCcccccccCCc
Q psy10034 319 N---EKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFVPAV 365 (399)
Q Consensus 319 ~---~~~~~vHtlngt~~ai~R~i~allE~~q~~~g-i~iP~~L~py~~~~ 365 (399)
+ ++..|||||||||||++|+|+|||||||++|| |.||++|+|||||.
T Consensus 444 k~~~~~~~~vHTLNgTalAv~R~l~AILENyQ~~dGsi~IP~vLrpym~g~ 494 (502)
T PLN02320 444 KGSLGPTKFVHTLNATACAVPRMIVCLLENYQQEDGSVVIPEPLRPFMGGL 494 (502)
T ss_pred cccCCCcceeEecccchhHHHHHHHHHHHhCcCCCCcEECChhhhhhcCCC
Confidence 1 24789999999999999999999999999999 99999999999886
No 4
>KOG2509|consensus
Probab=100.00 E-value=4.8e-96 Score=722.35 Aligned_cols=366 Identities=53% Similarity=0.847 Sum_probs=336.5
Q ss_pred CCCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCCCC---
Q psy10034 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE-KMKAKEPVGD--- 76 (399)
Q Consensus 1 ~MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~-~~k~~~~~~~--- 76 (399)
||||+++||..++|||+.++++.++|+.+...|++++++|.+|++...++++|+.+.|.++++|+. ..+.++....
T Consensus 1 ~~L~~~lf~~~~g~~p~~ir~~q~~r~~d~~~v~~~i~~d~~w~~~~~~ldeln~~~n~l~k~i~~~k~kkke~~~~l~~ 80 (455)
T KOG2509|consen 1 QMLDIRLFRTRKGGNPELIRESQKKRFQDVEAVDEVIELDKEWIETRFELDELNKEKNKLNKEIGDLKLKKKEDIGQLEE 80 (455)
T ss_pred CccccccccccCCCChHHHHHHHHHhhcCHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhhhHhhHHHHhhcchhhHHHH
Confidence 899999999999999999999999999898889999999999999999999999999999999993 3332221100
Q ss_pred -----------------C-----------CCC------CCCCCCCCCCCCCCcCCCceeEeecCCcc-CccCCHHHHHHH
Q psy10034 77 -----------------S-----------STL------PGNHLHPSVPVSNNEDENGIVRTKGDTEV-RKKYSHVDLITM 121 (399)
Q Consensus 77 -----------------~-----------~~l------~PN~~~~~vP~g~~e~~n~~~~~~g~~~~-~~~~dH~el~~~ 121 (399)
. ++| |||++||+||+|+||++|++.+.|+.... +....|.+|+..
T Consensus 81 ~~~~~~~~~~~~~l~e~~~~~~~~~~~l~~el~~~~~~ipN~~hpsVpv~~ee~~~~v~~~~~~~~~~~~~~~~~~l~~~ 160 (455)
T KOG2509|consen 81 SKAKNTEGAERKLLKEEAVELEEDESKLEDELYEVLLQIPNITHPSVPVSNEEQANVVQRVGGPLEFEFKLSHHDELVRA 160 (455)
T ss_pred hhhHhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHhCCCcCCCCCCCCchhhhhHHHHhcCCcccccccccHHHHHHh
Confidence 0 011 89999999999999998888888776654 455678889999
Q ss_pred cCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCcc
Q psy10034 122 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEK 201 (399)
Q Consensus 122 l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~ 201 (399)
+|++|++++++++|+++||++|.||+|++||++|+++++.++||+++++|+|+++++|++||+++.|.+++|++-+.
T Consensus 161 ~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~--- 237 (455)
T KOG2509|consen 161 LGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDG--- 237 (455)
T ss_pred cccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc--------------------------
Q psy10034 202 VGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL-------------------------- 255 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g-------------------------- 255 (399)
+++.||++|||+|++++|+++++...+||+||+++|+|||.|+|
T Consensus 238 ----------~~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~P 307 (455)
T KOG2509|consen 238 ----------GDEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGP 307 (455)
T ss_pred ----------CccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCc
Confidence 35789999999999999999999999999999999999999997
Q ss_pred -------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccC
Q psy10034 256 -------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK 316 (399)
Q Consensus 256 -------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~ 316 (399)
+||||||+|.|+||+||.+|++|||||||||+++.|+||+|||||+|||||||+|||+...
T Consensus 308 e~S~~~~eEmi~~~eef~qsLgip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy~~~k 387 (455)
T KOG2509|consen 308 EDSWEMLEEMINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRYGQKK 387 (455)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhhhhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999644
Q ss_pred CCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCCcccccCccCCCCChH
Q psy10034 317 KMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEE 384 (399)
Q Consensus 317 ~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~~~~~~~~~~~ 384 (399)
..++...||||+|||+||++|+|+|||||||++|||.||++|+|||+|. + +|||++..|++..
T Consensus 388 ~~~~~~~yvHtLN~TacA~~R~l~aiLEnyQ~edGi~VPe~Lr~ym~~~--~---~ip~~k~~p~~~~ 450 (455)
T KOG2509|consen 388 TNDGEKKYVHTLNGTACATPRALCAILENYQTEDGIEVPEVLRPYMGGQ--E---FIPFVKPAPKNLT 450 (455)
T ss_pred ccCCccceeeecchhhHhhhHHHHHhHhhccCCCCccCCHhHHhhcCCc--c---cccccccCCcccc
Confidence 3467789999999999999999999999999999999999999999996 5 9999999999887
No 5
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-94 Score=738.13 Aligned_cols=342 Identities=37% Similarity=0.609 Sum_probs=319.7
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-----
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----- 76 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~~~----- 76 (399)
|||+++||+ ||+.|++++++|+.+.+ ||+|+++|++||+++.++++||++||++||+|+++++.+++.++
T Consensus 1 MlD~k~ir~----n~~~v~~~l~~R~~~~~-vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~ 75 (425)
T PRK05431 1 MLDIKLIRE----NPEAVKEALAKRGFPLD-VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEV 75 (425)
T ss_pred CCCHHHHHh----CHHHHHHHHHhcCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH
Confidence 899999999 99999999999987544 99999999999999999999999999999999986655433111
Q ss_pred ------C-----------CC------CCCCCCCCCCCCCCCcCCCceeEeecCCcc--CccCCHHHHHHHcCCccccccc
Q psy10034 77 ------S-----------ST------LPGNHLHPSVPVSNNEDENGIVRTKGDTEV--RKKYSHVDLITMIDGVDSEAGA 131 (399)
Q Consensus 77 ------~-----------~~------l~PN~~~~~vP~g~~e~~n~~~~~~g~~~~--~~~~dH~el~~~l~l~d~~~~~ 131 (399)
. ++ -|||++||+||+|.||++|++++.||.++. |+++||++||+++||+||++++
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~g~~~~~n~~i~~~g~~~~~~f~~~dH~ei~~~l~l~d~~~~~ 155 (425)
T PRK05431 76 KELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDEDDNVEVRRWGEPREFDFEPKDHWELGEKLGILDFERAA 155 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCCceEEEEeCCCCCCCCCCCCHHHHHhhcCceeccccc
Confidence 0 00 189999999999999999999999999874 6789999999999999999999
Q ss_pred cccCceEEEeccHHHHHHHHHHHHHHHHHH-HcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCC
Q psy10034 132 IVAGGRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKD 210 (399)
Q Consensus 132 k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~-~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~ 210 (399)
+++|+|+|+|+|.|++|++||++|+++.+. ++||++|.+|.|++.++|++||||++|+++||+|++
T Consensus 156 ~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~~------------- 222 (425)
T PRK05431 156 KVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIED------------- 222 (425)
T ss_pred ccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEecC-------------
Confidence 999999999999999999999999999998 999999999999999999999999999999999963
Q ss_pred CCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-----------------------------------
Q psy10034 211 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL----------------------------------- 255 (399)
Q Consensus 211 ~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g----------------------------------- 255 (399)
+++||+||||++++++|+++++||++||++|+++|+|||+|+|
T Consensus 223 --~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~ 300 (425)
T PRK05431 223 --DDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEE 300 (425)
T ss_pred --CCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999995
Q ss_pred ----------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEE
Q psy10034 256 ----------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFV 325 (399)
Q Consensus 256 ----------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~v 325 (399)
.||||||+|.+++||||++++++||+|+|+|++++|+|++|||||+||||+|++|+|++.. +++..||
T Consensus 301 ~l~~~~~i~~~Lglpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~qsrr~~i~~~~~~--~~~~~~~ 378 (425)
T PRK05431 301 LTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARRANIRYRDEG--DGKPELV 378 (425)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchhhhhcCcEEecCC--CCceeEE
Confidence 8999999999999999999999999999999999999999999999999999999999751 3567899
Q ss_pred EcccccccchHHHHHHHHHhcCCCCc-eecCcccccccCCc
Q psy10034 326 HMLNATACATTRVICAILETHQTETG-VRIPDCLRKFVPAV 365 (399)
Q Consensus 326 Htlngt~~ai~R~i~allE~~q~~~g-i~iP~~L~py~~~~ 365 (399)
||+||||+|++|+|+|||||||+++| |+||++|+|||||.
T Consensus 379 htln~t~~a~~R~l~ailE~~q~~~g~i~iP~~l~py~~~~ 419 (425)
T PRK05431 379 HTLNGSGLAVGRTLVAILENYQQADGSVTIPEVLRPYMGGL 419 (425)
T ss_pred EEeCCchhhHHHHHHHHHHHCCCCCCcEECChhhhcccCCC
Confidence 99999999999999999999999999 99999999999987
No 6
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=5e-92 Score=717.76 Aligned_cols=340 Identities=38% Similarity=0.633 Sum_probs=317.2
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCCChH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCC--
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVE-LVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP-VGDS-- 77 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~-~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~-~~~~-- 77 (399)
||||++||+ |||.|++++++|+.+.+ +||+|+++|++||++++++++|+++||++||+|+++++.+++ ..+.
T Consensus 1 MlDik~ir~----n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~ 76 (418)
T TIGR00414 1 MLDRKLLRN----NPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKK 76 (418)
T ss_pred CCCHHHHHh----CHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 999999999 99999999999997644 589999999999999999999999999999999987655543 1110
Q ss_pred --------------------CC------CCCCCCCCCCCCCCCcCCCceeEeecCCcc--CccCCHHHHHHHcCCccccc
Q psy10034 78 --------------------ST------LPGNHLHPSVPVSNNEDENGIVRTKGDTEV--RKKYSHVDLITMIDGVDSEA 129 (399)
Q Consensus 78 --------------------~~------l~PN~~~~~vP~g~~e~~n~~~~~~g~~~~--~~~~dH~el~~~l~l~d~~~ 129 (399)
++ -|||++||+||+|.||++|+++++||.++. |+++||++||+++||+||+.
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g~~~~~n~~~~~~g~~~~~~~~~~~H~~l~~~l~l~d~~~ 156 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKDEEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDR 156 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcccCeEeeecCCCCCCCCCCCCHHHHHHhCCCccccc
Confidence 00 189999999999999999999999998874 67899999999999999999
Q ss_pred cccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCC
Q psy10034 130 GAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEK 209 (399)
Q Consensus 130 ~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~ 209 (399)
+++++|+|||||+|.|++|++||++|+++.+.+.||++|.+|.|++.++|++||||++|+++||+|++
T Consensus 157 ~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~------------ 224 (418)
T TIGR00414 157 AVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED------------ 224 (418)
T ss_pred cccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEecC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc----------------------------------
Q psy10034 210 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL---------------------------------- 255 (399)
Q Consensus 210 ~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g---------------------------------- 255 (399)
+++||+||||++++++|+++++||++||++|+++|+|||+|+|
T Consensus 225 ---~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~ 301 (418)
T TIGR00414 225 ---TDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELE 301 (418)
T ss_pred ---CCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHH
Confidence 3699999999999999999999999999999999999999984
Q ss_pred -----------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeE
Q psy10034 256 -----------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEF 324 (399)
Q Consensus 256 -----------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~ 324 (399)
.||||||+|.+++||||++++++||||+|+|++++|+||+|||||+||||+|++|+|++.. ++++.+
T Consensus 302 ~~~~~~~~i~~~Lglp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr~~i~y~~~~--~~~~~~ 379 (418)
T TIGR00414 302 EMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKN--KGKNKY 379 (418)
T ss_pred HHHHHHHHHHHHcCCceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHhCCcEEECCC--CCceEE
Confidence 8999999999999999999999999999999999999999999999999999999999752 345689
Q ss_pred EEcccccccchHHHHHHHHHhcCCCCc-eecCccccccc
Q psy10034 325 VHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFV 362 (399)
Q Consensus 325 vHtlngt~~ai~R~i~allE~~q~~~g-i~iP~~L~py~ 362 (399)
|||+||||+|++|+|+|||||||+++| |.||++|+|||
T Consensus 380 vh~ln~~~~ai~R~i~Aile~~~~~~G~i~iP~~l~py~ 418 (418)
T TIGR00414 380 VHTLNGTALAIGRTIVAILENYQTEDGSVEIPEVLRKYL 418 (418)
T ss_pred EEeecCcchHHHHHHHHHHHHccCCCCCEeCChhccccC
Confidence 999999999999999999999999999 88999999997
No 7
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=5.4e-67 Score=512.97 Aligned_cols=249 Identities=51% Similarity=0.837 Sum_probs=237.0
Q ss_pred CCceeEeecCCcc--CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccc
Q psy10034 97 ENGIVRTKGDTEV--RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFM 174 (399)
Q Consensus 97 ~n~~~~~~g~~~~--~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~ 174 (399)
+|+++++||.++. ++++||++||+++|||||+++++++|+|+|+|+|.|++|+++|++|+++++.+.||++|.+|.|+
T Consensus 1 ~~~~~~~~g~~~~~~~~~~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~ 80 (297)
T cd00770 1 DNVEIRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLV 80 (297)
T ss_pred CceEEEEECCCCCCCCCCCCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccc
Confidence 4788999999885 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 175 RKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 175 ~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
+.++|++||||+.|+++||++++ ++++|+||+|++++++|+++++||++||++++++|+|||+|+
T Consensus 81 ~~~l~~~sg~~~~~~~~~f~v~~---------------~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~ 145 (297)
T cd00770 81 RKEVMEGTGQLPKFDEQLYKVEG---------------EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEA 145 (297)
T ss_pred cHHHHhhcCcCccChhcccEecC---------------CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCcc
Confidence 99999999999999999999964 379999999999999999999999999999999999999996
Q ss_pred c---------------------------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCc
Q psy10034 255 L---------------------------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSG 289 (399)
Q Consensus 255 g---------------------------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~ 289 (399)
+ +|||||+++.++++|||++++++||+|+|+|+++
T Consensus 146 ~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~ 225 (297)
T cd00770 146 GSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQG 225 (297)
T ss_pred ccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCccccCchhhheeeheecCCCC
Confidence 5 7999999999999999999999999999999999
Q ss_pred ccceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCc-eecCccccccc
Q psy10034 290 AFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFV 362 (399)
Q Consensus 290 ~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~g-i~iP~~L~py~ 362 (399)
+|+|++|||||+||||+|++|+|.+.+ +++..+|||+||||+|++|+|+|||||||+++| |.+|++|+|||
T Consensus 226 ~~~e~~s~s~~~d~~s~r~~i~y~~~~--~~~~~~~~~~~~~~~~~~R~l~alle~~~~~~g~v~~P~~l~py~ 297 (297)
T cd00770 226 KYREISSCSNCTDFQARRLNIRYRDKK--DGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVIPEVLRPYM 297 (297)
T ss_pred CeEEEEEccCccChhhhhcCcEEecCC--CCCeeeeeEecccchHHHHHHHHHHHhCcCCCCcEeCchhhcccC
Confidence 999999999999999999999999752 266789999999999999999999999999999 67779999997
No 8
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-55 Score=454.48 Aligned_cols=268 Identities=16% Similarity=0.174 Sum_probs=236.3
Q ss_pred CCCCCCCCCCCCCcCCCceeEeecCCcc--CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHH
Q psy10034 82 GNHLHPSVPVSNNEDENGIVRTKGDTEV--RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSK 159 (399)
Q Consensus 82 PN~~~~~vP~g~~e~~n~~~~~~g~~~~--~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~ 159 (399)
-..-...||+|++|.+ ++++.+| ++. |+ .+|.+++.++||+| +++|+|+|+|+|.|++|+++|++|+++.
T Consensus 165 ~~~~~~~~~~g~~~~~-~~~~~~~-~~~~~F~-~~h~el~~~~glld-----k~~G~G~~~~~p~Ga~L~~aL~~~i~d~ 236 (517)
T PRK00960 165 EKLEDLTFYVGKAEPG-TIVSESK-KREITFD-GDPTEEAEKLGWVK-----RFPGRGQWFYTPPMTKLFRAFEKLVIEE 236 (517)
T ss_pred HhhccCccCCCCCCCC-eEEEEeC-CCCCCCC-CCHHHHHHHCCCcc-----ccCCCceEEEEChHHHHHHHHHHHHHHh
Confidence 4444558999998877 9999999 653 66 99999999999999 5789999999999999999999999997
Q ss_pred H-HHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCcc----------------CCC-CCCCCCCCCCeeeeCCC
Q psy10034 160 W-IEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEK----------------VGD-SAPEKDELDDKYLIATS 221 (399)
Q Consensus 160 ~-~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~----------------~~~-~~~~~~~~~~~~L~pTs 221 (399)
+ .+.||++|.+|.|++.++|++||||++|.++||.+...+.. .+. +..+.+.+..|+|.||+
T Consensus 237 ~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~ 316 (517)
T PRK00960 237 VLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQ 316 (517)
T ss_pred hHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccccccccccccccccccC
Confidence 5 67799999999999999999999999999999999642100 000 00123335678999999
Q ss_pred ChHHHHHHhcCcCCCCCcCceeeee-ccccccCCc-----------------------------------------cCCc
Q psy10034 222 EQPICAVHRDSWLPEASLPIRYLGV-STCFRQEDL-----------------------------------------TKSI 259 (399)
Q Consensus 222 E~~~~~l~~~~i~sy~~LPlk~~~~-s~~fR~E~g-----------------------------------------~LgL 259 (399)
|.+++.+|+++++||++||+|++++ ++|||+|+| .|||
T Consensus 317 Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgL 396 (517)
T PRK00960 317 CEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDL 396 (517)
T ss_pred cHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999995 599999996 7999
Q ss_pred c-EEEEE----------eccCCCCccccceeceeeecC---CCcccceEEEecCcchhhhhccccEEeccCCCCCceeEE
Q psy10034 260 A-YRVVN----------IVSGALNHAAAKKLDLEAWFP---GSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFV 325 (399)
Q Consensus 260 p-yrvv~----------~~sgdlg~~a~~~ydiE~w~P---~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~v 325 (399)
| ||++. +++|||++++.++||+|+||| ++++|.||+|||||+||||+||+|+|.+ + ..+
T Consensus 397 p~~r~v~~DPFf~~~~k~~~~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~farrfnIk~~~-----g--~~~ 469 (517)
T PRK00960 397 EYWREVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTHFVEGFNIKDYK-----G--RKL 469 (517)
T ss_pred CceEEecccccccccCccccccccCccccceeEEEEecCccCCCCEEEEEeeeeccchhhHhhCcccCC-----C--CeE
Confidence 9 99998 899999999999999999999 8899999999999999999999998742 3 259
Q ss_pred EcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcc
Q psy10034 326 HMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVY 366 (399)
Q Consensus 326 Htlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~ 366 (399)
|| ||||+|++|+++|||||||.++| .||++|+||+++..
T Consensus 470 hT-nctG~g~eR~l~AlLe~hG~d~~-~wPe~~r~~~~~~~ 508 (517)
T PRK00960 470 WT-GCTGYGLERWVIGFLAQKGFDPE-NWPEEIRKRVGELP 508 (517)
T ss_pred ee-cceeeHHHHHHHHHHHhcCCCCC-cCCHHHHHhhcCCC
Confidence 99 99999999999999999999999 99999999998774
No 9
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=4.1e-50 Score=385.69 Aligned_cols=208 Identities=16% Similarity=0.149 Sum_probs=195.8
Q ss_pred CHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccce
Q psy10034 114 SHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 193 (399)
Q Consensus 114 dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f 193 (399)
.| +|+.+.|+++ .+++|++.|+|.|++++++|++++++.+.+.||++|.+|.|.+.++|.++||++.|.++||
T Consensus 6 ~~-~l~~~ag~~~------~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy 78 (255)
T cd00779 6 SH-KLLLRAGFIR------QTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELL 78 (255)
T ss_pred HH-HHHHHcCCcc------cCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccE
Confidence 44 5999999985 3678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc------------------
Q psy10034 194 KVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------------ 255 (399)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------------ 255 (399)
++.+.+ +++++|+||+|+++++++++++.||++||+|++++++|||+|++
T Consensus 79 ~~~d~~------------~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~ 146 (255)
T cd00779 79 RLKDRH------------GKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYS 146 (255)
T ss_pred EEecCC------------CCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhhee
Confidence 998752 45799999999999999999999999999999999999999954
Q ss_pred ------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccE
Q psy10034 256 ------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVR 311 (399)
Q Consensus 256 ------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~ 311 (399)
.|||||+++..++|+||+..+++||+|+|||+.+ ++||+|||||+||||+|++|+
T Consensus 147 ~~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~~~~~~~~~~gg~~s~~~~~e~~~~~~~-~~e~~s~~~lg~~~sr~~~i~ 225 (255)
T cd00779 147 FDIDEESLEETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKITK-GIEVGHIFQLGTKYSKALGAT 225 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcccEEEEEEEecCCCC-eEEEEeeeecchhHHHhcCcE
Confidence 8999999999999999999999999999999976 899999999999999999999
Q ss_pred EeccCCCCCceeEEEcccccccchHHHHHHHHHh
Q psy10034 312 YGQTKKMNEKIEFVHMLNATACATTRVICAILET 345 (399)
Q Consensus 312 y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~ 345 (399)
|+++ +++..+||| ||+|+||+|+|+|||||
T Consensus 226 ~~~~---~~~~~~~~~-~~~gi~~~R~l~ai~e~ 255 (255)
T cd00779 226 FLDE---NGKPKPLEM-GCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred EECC---CCCEEeeEe-cCccchHHHHHHHHHcC
Confidence 9975 567899999 99999999999999996
No 10
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=8.8e-47 Score=363.78 Aligned_cols=210 Identities=19% Similarity=0.182 Sum_probs=192.2
Q ss_pred HHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHH-HHhcCcccccccceE
Q psy10034 116 VDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVM-QEVAQLAQFDEELYK 194 (399)
Q Consensus 116 ~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~-~~sg~~~~f~~~~f~ 194 (399)
.+|++++|++|+.. .+|+|+|+|.|+++.++|++++++++.+.||++|.+|.|++.++| .++|||++|.++||+
T Consensus 7 ~~l~~~~~~~d~~~-----~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~ 81 (261)
T cd00778 7 TEVITKAELIDYGP-----VKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAW 81 (261)
T ss_pred HHHHHHhCCcccCC-----CCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEE
Confidence 57999999999862 458999999999999999999999999999999999999999998 569999999999999
Q ss_pred EeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-------------------
Q psy10034 195 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------------- 255 (399)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------------- 255 (399)
+.+.+.. ..+++++|+||+|++++.++++++.||++||++++++++|||+|++
T Consensus 82 ~~~~~~~--------~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~ 153 (261)
T cd00778 82 VTHGGLE--------ELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTA 153 (261)
T ss_pred EEecCCc--------ccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeec
Confidence 9875321 0125799999999999999999999999999999999999999986
Q ss_pred -----------------------cC-CccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccE
Q psy10034 256 -----------------------TK-SIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVR 311 (399)
Q Consensus 256 -----------------------~L-gLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~ 311 (399)
.| ||||+++..|++|+++++.++||+|+|+| .+++.||+|||||+||||+||+|+
T Consensus 154 ~~~~e~~~~~~~~~~~~~~~i~~~llgl~~~~~~~~~~d~~~~a~~~~~ie~~~p-~~~~~ev~s~~~l~~~~s~r~~i~ 232 (261)
T cd00778 154 HATEEEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMP-DGRALQSGTSHNLGQNFSKAFDIK 232 (261)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCccccCCCCccceEEEEEee-CCCEEEEEeccccccccchhcCCE
Confidence 67 99999999999999999999999999999 899999999999999999999999
Q ss_pred EeccCCCCCceeEEEcccccccchHHHHHHHHH
Q psy10034 312 YGQTKKMNEKIEFVHMLNATACATTRVICAILE 344 (399)
Q Consensus 312 y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE 344 (399)
|+++ +++..++|| ||+| +++|+|+|||-
T Consensus 233 y~~~---~g~~~~~h~-~~~g-~~~R~i~ali~ 260 (261)
T cd00778 233 YQDK---DGQKEYVHQ-TSWG-ISTRLIGAIIM 260 (261)
T ss_pred EECC---CCCCcCcEE-eccc-HHHHHHHHHHh
Confidence 9976 466789999 8887 77999999984
No 11
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=2e-46 Score=361.83 Aligned_cols=213 Identities=19% Similarity=0.149 Sum_probs=191.0
Q ss_pred CHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccccc-ccc
Q psy10034 114 SHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFD-EEL 192 (399)
Q Consensus 114 dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~-~~~ 192 (399)
.| +|+.+.|+++.. .++|++.|+|.|+++.++|++++.+++.+.||++|.+|.|++.++|.++|+++.+. ++|
T Consensus 6 ~~-~~l~~ag~~~~~-----~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~ 79 (264)
T cd00772 6 SL-EHIGKAELADQG-----PGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKEL 79 (264)
T ss_pred HH-HHHHhcCCcccc-----CCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccc
Confidence 45 499999999852 36799999999999999999999999999999999999999999999999999955 899
Q ss_pred eEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-----------------
Q psy10034 193 YKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL----------------- 255 (399)
Q Consensus 193 f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g----------------- 255 (399)
|.+.+.+++ + .+++++|+||+|++++.++++++.||++||++++++++|||+|++
T Consensus 80 ~~~~~~~~~-------~-~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~ 151 (264)
T cd00772 80 AVFKDAGDE-------E-LEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGH 151 (264)
T ss_pred eEEEeCCCC-------c-cCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeE
Confidence 999875311 0 126799999999999999999999999999999999999999964
Q ss_pred -------------------------cCC-ccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccc
Q psy10034 256 -------------------------TKS-IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLL 309 (399)
Q Consensus 256 -------------------------~Lg-Lpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~ 309 (399)
.|| |||+++.+++||+|++++++||+||||| .+.+.++.+||+|+||||++++
T Consensus 152 ~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~~~p-~~~~~~~~~~~~~~~~~~~~~~ 230 (264)
T cd00772 152 SAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALME-DGKAKQAETGHIFGEGFARAFD 230 (264)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCCEEEEEECC-CCCEeEEEeeeeccCCchhhcC
Confidence 899 9999999999999999999999999999 3466777788889999999655
Q ss_pred --cEEeccCCCCCceeEEEcccccccchHHHHHHHHHh
Q psy10034 310 --VRYGQTKKMNEKIEFVHMLNATACATTRVICAILET 345 (399)
Q Consensus 310 --i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~ 345 (399)
|+|+++ +++..+||| ||||+|++|+|+||||+
T Consensus 231 ~~i~~~~~---~~~~~~~~~-n~~gi~~~R~l~aile~ 264 (264)
T cd00772 231 LKAKFLDK---DGKEKFFEM-GCWGIGISRFIGAIIEQ 264 (264)
T ss_pred CccEEECC---CCCEEEEEe-ccccchHHHHHHHhhcC
Confidence 999975 467899999 99999999999999984
No 12
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=4.5e-42 Score=336.98 Aligned_cols=220 Identities=17% Similarity=0.185 Sum_probs=198.0
Q ss_pred CHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccce
Q psy10034 114 SHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 193 (399)
Q Consensus 114 dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f 193 (399)
||++||++++++||+.+ +|+|+++|+|.|+++.++|++|+++.+.++||++|.+|.|++.++|.++||++.|.++||
T Consensus 1 dH~~l~~~~~l~~~~~~---~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my 77 (298)
T cd00771 1 DHRRLGGELELFFFFDE---AGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMF 77 (298)
T ss_pred ChhHHHHHcCCcccCCC---CCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCce
Confidence 79999999999999876 789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc------------------
Q psy10034 194 KVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------------ 255 (399)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------------ 255 (399)
++++. +++++|+||+|++++.+|+++++||++||+|++++++|||+|++
T Consensus 78 ~~~~~-------------~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~ 144 (298)
T cd00771 78 PFEEE-------------DEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAH 144 (298)
T ss_pred EeccC-------------CceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEE
Confidence 99653 35799999999999999999999999999999999999999975
Q ss_pred ------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCc-----------
Q psy10034 256 ------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNC----------- 300 (399)
Q Consensus 256 ------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc----------- 300 (399)
.||+++..+.+++++ +...+|+|+|+|+++.++|++||++.
T Consensus 145 i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~~~i~l~~~~----~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~af 220 (298)
T cd00771 145 IFCTPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELSTRP----EKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAF 220 (298)
T ss_pred EEeCCcchHHHHHHHHHHHHHHHHHcCCCcEEEEEEcCh----hHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCccc
Confidence 799999999999987 55688999999998888876555433
Q ss_pred -----------------------chhh-hhccccEEeccCCCCCceeEEEc-ccccccchHHHHHHHHHhcCCCCceecC
Q psy10034 301 -----------------------LDYQ-SRRLLVRYGQTKKMNEKIEFVHM-LNATACATTRVICAILETHQTETGVRIP 355 (399)
Q Consensus 301 -----------------------~Dyq-a~rl~i~y~~~~~~~~~~~~vHt-lngt~~ai~R~i~allE~~q~~~gi~iP 355 (399)
.||+ ++||+|+|.++++....|..+|+ +-|| ++|+|++|||+|++ .||
T Consensus 221 ygpkid~~~~d~~gr~~q~~t~qld~~~~~~f~l~y~~~~~~~~~pv~ih~~~~Gs---~eR~i~~l~e~~~g----~~P 293 (298)
T cd00771 221 YGPKIDFHVKDALGREWQCSTIQLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGS---IERFIGILIEHYAG----KFP 293 (298)
T ss_pred ccceEEEEEEeCCCCeeecceeEeeccChhhcCCEEEccCCCccCCEEEEeCCCCc---HHHHHHHHHHhhCC----CCC
Confidence 3553 88999999987654456788997 5566 99999999999999 999
Q ss_pred ccccc
Q psy10034 356 DCLRK 360 (399)
Q Consensus 356 ~~L~p 360 (399)
.||+|
T Consensus 294 ~wlaP 298 (298)
T cd00771 294 LWLAP 298 (298)
T ss_pred CccCc
Confidence 99998
No 13
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=100.00 E-value=4.7e-41 Score=343.02 Aligned_cols=252 Identities=12% Similarity=0.120 Sum_probs=212.7
Q ss_pred ceeEeecCCcc--CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHH-HcCCeEecCCcccc
Q psy10034 99 GIVRTKGDTEV--RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMR 175 (399)
Q Consensus 99 ~~~~~~g~~~~--~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~-~~Gy~ev~~P~l~~ 175 (399)
.+++.||.++. |+ .+|.+|++++||+| +.+|+|+|+|+|.|++|++||++|++|.+. +.||++|++|.|++
T Consensus 180 ~~~~~~~~~~~~~F~-~~h~el~~k~glid-----k~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp 253 (520)
T TIGR00415 180 EIIAESKAKRDFFFD-GDPTDEAEKLGWVK-----KFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIP 253 (520)
T ss_pred ceeeecCCCCCCCCC-CCHHHHHHHCCCee-----EEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEec
Confidence 58899999885 55 99999999999997 679999999999999999999999998775 56999999999999
Q ss_pred HHHHHHhcCcccccccceEEeccCc----------------cCCCCCC-CCCCCCCeeeeCCCChHHHHHHhcCcCCCCC
Q psy10034 176 KEVMQEVAQLAQFDEELYKVIGKGE----------------KVGDSAP-EKDELDDKYLIATSEQPICAVHRDSWLPEAS 238 (399)
Q Consensus 176 ~~l~~~sg~~~~f~~~~f~i~~~~~----------------~~~~~~~-~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~ 238 (399)
.++|.++||+++|.++||.+...+. +.+.+.. +.+.+.+++|+||||+|++++|+++++++++
T Consensus 254 ~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~d 333 (520)
T TIGR00415 254 LDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAED 333 (520)
T ss_pred HHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhh
Confidence 9999999999999999999963211 0000000 1112347999999999999999999999999
Q ss_pred cCceeeeec-cccccCCc-----------------------------------------cCCccEEEEEec---------
Q psy10034 239 LPIRYLGVS-TCFRQEDL-----------------------------------------TKSIAYRVVNIV--------- 267 (399)
Q Consensus 239 LPlk~~~~s-~~fR~E~g-----------------------------------------~LgLpyrvv~~~--------- 267 (399)
||+++++++ +|||+|+| .|+||||++.++
T Consensus 334 LPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lpyrv~~adDPFf~~g~k 413 (520)
T TIGR00415 334 KPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWTEVGDDPFYLEGRK 413 (520)
T ss_pred CCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecCCcccccccC
Confidence 999999966 79999996 899999998744
Q ss_pred --cCCCCccccceeceeeecCCCccc---ceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccchHHHHHHH
Q psy10034 268 --SGALNHAAAKKLDLEAWFPGSGAF---RELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAI 342 (399)
Q Consensus 268 --sgdlg~~a~~~ydiE~w~P~~~~~---~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~al 342 (399)
+++|+|+++++||+|+|+|+...| ..+.|++..+|.++++|+|+ + ++..++|| .|.|++++|+++|+
T Consensus 414 ~~~~dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~Hg~hF~k~F~I~--~-----~~~~~a~t-tC~G~gleR~i~Al 485 (520)
T TIGR00415 414 KEDRGIEFPDVPKYEMRLSLPGIEDERKGVAVTSANVHGTHFIEGFRIK--D-----AKGLNIWT-GCTGIGISRWIVGF 485 (520)
T ss_pred cccccccCcccceEEEEEEEccccCCCCCcEEEEeechhcccccccCcc--c-----CCCCeEEE-eeeeccHHHHHHHH
Confidence 678999999999999999998854 45777777899999999997 2 34468998 48999999999999
Q ss_pred HHhcCCCCceecCcccccccCCc
Q psy10034 343 LETHQTETGVRIPDCLRKFVPAV 365 (399)
Q Consensus 343 lE~~q~~~gi~iP~~L~py~~~~ 365 (399)
|.+|+-+- =.||+..+.-.++.
T Consensus 486 i~~HG~d~-~~Wp~~vr~~~~~~ 507 (520)
T TIGR00415 486 LAQKGFEF-DDWHDFIGEKIEGL 507 (520)
T ss_pred HHHhCCCh-hhCCHHHHHHhccc
Confidence 99997421 16999888887776
No 14
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.2e-41 Score=349.19 Aligned_cols=234 Identities=17% Similarity=0.184 Sum_probs=211.9
Q ss_pred CCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHH-hcCccccccc
Q psy10034 113 YSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEE 191 (399)
Q Consensus 113 ~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~f~~~ 191 (399)
..|.+|+++++|+|+.. .+|+|+|+|.|+++.++|++++++.+.+.||++|.+|.|++.++|.. +|||++|.++
T Consensus 16 ~w~~~~~~~~~l~d~~~-----v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e 90 (477)
T PRK08661 16 EWYNDVVKKAELADYSP-----VKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPE 90 (477)
T ss_pred HHHHHHHHHccCcccCC-----CCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccc
Confidence 47999999999999865 25899999999999999999999999999999999999999999965 8999999999
Q ss_pred ceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc----------------
Q psy10034 192 LYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL---------------- 255 (399)
Q Consensus 192 ~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g---------------- 255 (399)
||++.+.+.. . .+++++|+||+|++++.+|++++.||++||++++|+++|||+|++
T Consensus 91 ~~~v~~~~~~-------~-~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h 162 (477)
T PRK08661 91 VAWVTHGGGE-------K-LEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGH 162 (477)
T ss_pred cEEEEccCCC-------c-cCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEccee
Confidence 9999865321 0 135799999999999999999999999999999999999999986
Q ss_pred --------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccc
Q psy10034 256 --------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLL 309 (399)
Q Consensus 256 --------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~ 309 (399)
.|||||+++..+.++.++.+..+||+|+|||+ +++.++++|++|++++|++|+
T Consensus 163 ~~~~~~eea~~e~~~~l~~y~~i~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~d-gr~~q~gt~~~Lg~~~s~~f~ 241 (477)
T PRK08661 163 TAHATEEEAEEETLEMLEIYKEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQAGTSHYLGQNFAKAFD 241 (477)
T ss_pred eeeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCC-CCEEEEEEecccccchhHhcC
Confidence 79999999999999999999999999999997 788999999999999999999
Q ss_pred cEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCc
Q psy10034 310 VRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAV 365 (399)
Q Consensus 310 i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~ 365 (399)
|+|.++ +++..++|+. +.|+ ++|+|+||||+|+++.|++||.+++|++.-.
T Consensus 242 i~y~d~---~g~~~~v~~~-s~G~-~~R~i~alie~~~D~~Gl~lP~~iAP~qV~I 292 (477)
T PRK08661 242 IKFQDK---DGKLEYVHQT-SWGV-STRLIGALIMTHGDDKGLVLPPKIAPIQVVI 292 (477)
T ss_pred CEEECC---CCCEeeeEEe-cccH-HHHHHHHHHHHhCccCCCccCcccCCCeEEE
Confidence 999976 4677899984 4453 4999999999999999999999999999733
No 15
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=1.1e-39 Score=343.99 Aligned_cols=172 Identities=19% Similarity=0.199 Sum_probs=158.4
Q ss_pred ccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccc
Q psy10034 111 KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 190 (399)
Q Consensus 111 ~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~ 190 (399)
+..+|. |+.+.|+++ .+++|+|+|+|.|+++.++|++++++++.+.||++|.+|.|.+.++|..+|||+.|++
T Consensus 19 ~~~s~~-ll~rag~i~------~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~ 91 (568)
T TIGR00409 19 EVKSHQ-LLLRAGFIR------RLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGP 91 (568)
T ss_pred chhhHH-HHHhCCCcc------ccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccch
Confidence 456887 999999996 3678999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---------------
Q psy10034 191 ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--------------- 255 (399)
Q Consensus 191 ~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--------------- 255 (399)
+||++.+++ +++++|+||+|+.++.++++++.||++||+++||+++|||+|++
T Consensus 92 emf~~~dr~------------~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d 159 (568)
T TIGR00409 92 ELLRLKDRK------------GREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKD 159 (568)
T ss_pred hcEEEecCC------------CCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEE
Confidence 999998763 46899999999999999999999999999999999999999965
Q ss_pred ---------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhh
Q psy10034 256 ---------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSR 306 (399)
Q Consensus 256 ---------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~ 306 (399)
+|||||++|.+++|+||++++++||+++ ..++++|+||| |+||||+
T Consensus 160 ~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~----~~ge~~i~~c~-~~~y~an 232 (568)
T TIGR00409 160 AYSFHSDEESLDATYQKMYQAYSNIFSRLGLDFRPVQADSGAIGGSASHEFMVLA----ESGEDTIVYSD-ESDYAAN 232 (568)
T ss_pred EEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcceEEEeccccCCCccceEEeEec----CCCceEEEEec-Ccccchh
Confidence 8999999999999999999999999886 35679999999 4477754
No 16
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=1.7e-39 Score=336.72 Aligned_cols=231 Identities=16% Similarity=0.199 Sum_probs=208.2
Q ss_pred HHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhc-CcccccccceE
Q psy10034 116 VDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA-QLAQFDEELYK 194 (399)
Q Consensus 116 ~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg-~~~~f~~~~f~ 194 (399)
.+|+.+.||+|+.. .+|+++|+|.|+++.+.|.+++++.+.+.||++|.+|.|++.++|.++| ||++|.++||+
T Consensus 13 ~~l~~~~~li~~~~-----~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~ 87 (472)
T TIGR00408 13 HQILEKAEIIDYYP-----VKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYW 87 (472)
T ss_pred HHHHHHcCCccccC-----CCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEE
Confidence 35999999999732 3689999999999999999999999999999999999999999999865 99999999999
Q ss_pred EeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-------------------
Q psy10034 195 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------------- 255 (399)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------------- 255 (399)
+.+.+.+ . .+++++|+||+|++++.+|++++.||++||++++|+++|||+|.+
T Consensus 88 v~~~g~~-------~-~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~ 159 (472)
T TIGR00408 88 ITHGGLS-------K-LDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTA 159 (472)
T ss_pred EecCCCC-------c-cCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhh
Confidence 9876321 0 136899999999999999999999999999999999999999986
Q ss_pred ------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccE
Q psy10034 256 ------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVR 311 (399)
Q Consensus 256 ------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~ 311 (399)
.|||||+++..+.++.++.+..+||+|+|+|. +++.|++++++|++++|++|+|+
T Consensus 160 ~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~d-gr~~q~~t~~~Lg~~~sk~f~i~ 238 (472)
T TIGR00408 160 HATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPD-GRTLQIATSHNLGQNFAKTFEIK 238 (472)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCchhhcCCccceEEEeEEEcC-CCEEEEeeeecccccccHhcCCE
Confidence 69999999999988988888999999999998 47889999999999999999999
Q ss_pred EeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCc
Q psy10034 312 YGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAV 365 (399)
Q Consensus 312 y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~ 365 (399)
|.+. ++++.++|+ ++.|+ ++|+|+||||+|+++.|++||.+++|++...
T Consensus 239 y~~~---~g~~~~~h~-~s~Gi-~eRli~~lie~~~d~~gl~~P~~iaP~qV~I 287 (472)
T TIGR00408 239 FETP---TGDKEYAYQ-TSYGI-STRVIGALIAIHSDEKGLVLPPRVAPIQVVI 287 (472)
T ss_pred EECC---CCCEEeeEE-ccccH-HHHHHHHHHHHhCCCCceeeChhhCcceEEE
Confidence 9986 467889998 56665 3999999999999999999999999999733
No 17
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=4.1e-39 Score=343.28 Aligned_cols=245 Identities=18% Similarity=0.208 Sum_probs=200.0
Q ss_pred CcCCCceeEeecCCcc--------------CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHH
Q psy10034 94 NEDENGIVRTKGDTEV--------------RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSK 159 (399)
Q Consensus 94 ~e~~n~~~~~~g~~~~--------------~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~ 159 (399)
|+++....|.||..-. .+.+||++||++++||||++. +|+|+|+|+|.|++|+++|++|+++.
T Consensus 184 ~~~~~~l~ri~g~~~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~---~g~G~~~~~p~G~~l~~~L~~~~~~~ 260 (614)
T PLN02837 184 DEKNQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDD---AGGGLVFWHPKGAIVRHIIEDSWKKM 260 (614)
T ss_pred cccCcceEEEEEEecCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcC---cCCcceEEechHHHHHHHHHHHHHHH
Confidence 4555567777886531 267899999999999999874 79999999999999999999999999
Q ss_pred HHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCc
Q psy10034 160 WIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASL 239 (399)
Q Consensus 160 ~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~L 239 (399)
+.++||++|.||.|++.++|++||||+.|+++||.+.+.. ++.|+|.||+|+.++.+|++++.||++|
T Consensus 261 ~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~------------~~~y~l~p~~~p~~~~~~~~~~~SyrdL 328 (614)
T PLN02837 261 HFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIE------------DELYQLRPMNCPYHILVYKRKLHSYRDL 328 (614)
T ss_pred HHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCC------------CceEEECCCCcHHHHHHHhCccCChhHC
Confidence 9999999999999999999999999999999999986531 3578999999999999999999999999
Q ss_pred CceeeeeccccccCCc------------------------------------------cCCccEEEEEeccCC---CC--
Q psy10034 240 PIRYLGVSTCFRQEDL------------------------------------------TKSIAYRVVNIVSGA---LN-- 272 (399)
Q Consensus 240 Plk~~~~s~~fR~E~g------------------------------------------~LgLpyrvv~~~sgd---lg-- 272 (399)
|++++++++|||+|++ .||+||+++.++++. +|
T Consensus 329 Plr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~ 408 (614)
T PLN02837 329 PIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSD 408 (614)
T ss_pred CHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCH
Confidence 9999999999999983 899999999999874 22
Q ss_pred --------------------------ccccceeceeeecCCC-cccceEEEec-Ccchhh-hhccccEEeccCCCCCcee
Q psy10034 273 --------------------------HAAAKKLDLEAWFPGS-GAFRELVSCS-NCLDYQ-SRRLLVRYGQTKKMNEKIE 323 (399)
Q Consensus 273 --------------------------~~a~~~ydiE~w~P~~-~~~~Ev~s~S-nc~Dyq-a~rl~i~y~~~~~~~~~~~ 323 (399)
..|.....|++-++.. ++. ..|+ ...||+ +.||+++|.+.++....|.
T Consensus 409 ~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~---~q~~tiqldf~~~~~f~l~y~~~d~~~~~pv 485 (614)
T PLN02837 409 DIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRK---WQCSTIQVDFNLPERFDITYVDSNSEKKRPI 485 (614)
T ss_pred HHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCce---eeecceeEeecchhhcCcEEECCCCCccCCE
Confidence 1222222333344332 222 2232 236774 9999999998865445678
Q ss_pred EEEc-ccccccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 324 FVHM-LNATACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 324 ~vHt-lngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
+||+ +-| .++|+|++|+|+|.+ .||.||+|++.
T Consensus 486 ~ih~~~~G---~~eRlia~Lie~~~g----~~P~~laP~qV 519 (614)
T PLN02837 486 MIHRAILG---SLERFFGVLIEHYAG----DFPLWLAPVQA 519 (614)
T ss_pred EEEcCCcc---CHHHHHHHHHHHcCC----CCCCCCCCccE
Confidence 9997 334 599999999999998 69999999975
No 18
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-38 Score=337.58 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=158.5
Q ss_pred ccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccc
Q psy10034 111 KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 190 (399)
Q Consensus 111 ~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~ 190 (399)
+..+|. |+.+.|+++ .+|+|+|+|+|.|++++++|++++++++.+.||++|.+|.|.+.++|..+|||+.|++
T Consensus 19 ~~~s~~-ll~~ag~i~------~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~ 91 (565)
T PRK09194 19 EVISHQ-LLLRAGYIR------KLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGP 91 (565)
T ss_pred chhhHH-HHHhCCCcc------ccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccch
Confidence 456887 999999996 2578999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---------------
Q psy10034 191 ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--------------- 255 (399)
Q Consensus 191 ~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--------------- 255 (399)
+||++.+++ +++++|+||+|++++.++++++.||++||+|+|++++|||+|++
T Consensus 92 emf~~~d~~------------~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d 159 (565)
T PRK09194 92 ELLRLKDRH------------GRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKD 159 (565)
T ss_pred hceEEecCC------------CCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEee
Confidence 999998763 46899999999999999999999999999999999999999965
Q ss_pred ---------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcc
Q psy10034 256 ---------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCL 301 (399)
Q Consensus 256 ---------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~ 301 (399)
+|||||+++..++|+||++++++| |+|++.+|+||+||++|+
T Consensus 160 ~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~~~~~~g~~gg~~s~e~----~~~~~~g~~~~~~c~~c~ 228 (565)
T PRK09194 160 AYSFHADEESLDETYDAMYQAYSRIFDRLGLDFRAVEADSGAIGGSASHEF----MVLADSGEDTIVYSDESD 228 (565)
T ss_pred EEEEcCChHHHHHHHHHHHHHHHHHHHHhCCccEEEEcccccCCCceeEEE----EEecCCCceEEEEeCCCC
Confidence 899999999999999999999999 999999999999999984
No 19
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.8e-38 Score=322.87 Aligned_cols=230 Identities=14% Similarity=0.166 Sum_probs=198.5
Q ss_pred ccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccc
Q psy10034 111 KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 190 (399)
Q Consensus 111 ~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~ 190 (399)
+..+|. |+.+.|+++. .++|+|+|+|.|+++.++|++++++++.+.||++|.+|.|.+.++|..+|||+.|++
T Consensus 19 ~~~~~~-ll~r~g~~~~------~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~ 91 (439)
T PRK12325 19 EIVSHR-LMLRAGMIRQ------QAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGK 91 (439)
T ss_pred chHHHH-HHHHcCCccc------cCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccch
Confidence 467897 8888899862 578999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---------------
Q psy10034 191 ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--------------- 255 (399)
Q Consensus 191 ~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--------------- 255 (399)
+||++.+.+ +++|+|+||+|+.++.++++.+.||++||+|+|++++|||+|++
T Consensus 92 emf~~~d~~------------~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D 159 (439)
T PRK12325 92 EMLRIKDRH------------DREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKD 159 (439)
T ss_pred hheEEecCC------------CCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEec
Confidence 999998752 46899999999999999999999999999999999999999965
Q ss_pred ---------------------------cCCccEEEEEeccCCCCccccceec-------eeeec----------------
Q psy10034 256 ---------------------------TKSIAYRVVNIVSGALNHAAAKKLD-------LEAWF---------------- 285 (399)
Q Consensus 256 ---------------------------~LgLpyrvv~~~sgdlg~~a~~~yd-------iE~w~---------------- 285 (399)
.|||+|..|.+++|.+|+..+++|. .+.|.
T Consensus 160 ~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~ 239 (439)
T PRK12325 160 AYSFDLDEEGARHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDF 239 (439)
T ss_pred cEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccC
Confidence 8999999999999999999888883 22221
Q ss_pred ----------------------CCCccc-------------ceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccc
Q psy10034 286 ----------------------PGSGAF-------------RELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNA 330 (399)
Q Consensus 286 ----------------------P~~~~~-------------~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlng 330 (399)
++.+.+ .||+.+.+|++-.+.+|+++|.++ +++.+.+|+ ++
T Consensus 240 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~---~g~~~~i~~-~~ 315 (439)
T PRK12325 240 DVADLQPIVDEWTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGP---DGKEVPVHM-GS 315 (439)
T ss_pred CHHHHHHHHhhhcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCcccccHhcCCEEECC---CCCEEeEEE-ee
Confidence 000000 145555566655588999999986 567788997 57
Q ss_pred cccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 331 TACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 331 t~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
.|++++|+|++|+|+|.++.|+.||.|++|++.
T Consensus 316 ~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV 348 (439)
T PRK12325 316 YGIGVSRLVAAIIEASHDDKGIIWPESVAPFKV 348 (439)
T ss_pred eECCHHHHHHHHHHHhCccCCCcCCCCcCCeEE
Confidence 788899999999999999999999999999976
No 20
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.3e-37 Score=328.23 Aligned_cols=230 Identities=19% Similarity=0.190 Sum_probs=188.8
Q ss_pred cCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccccccc
Q psy10034 112 KYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEE 191 (399)
Q Consensus 112 ~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~ 191 (399)
.+||++||+++|||||+.+ +++|+++|+|.|++|.++|++|+++.+.+.||++|.+|.|++.++|..+|||++|+++
T Consensus 196 ~~dH~~Lg~~~~L~d~~~~---s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~ 272 (613)
T PRK03991 196 EPPHVKLMREKELADYEPA---SDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGER 272 (613)
T ss_pred CCCHHHHHHHCCCcccccc---cCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchh
Confidence 5699999999999999875 5678999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeecc-ccccCCc---------------
Q psy10034 192 LYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST-CFRQEDL--------------- 255 (399)
Q Consensus 192 ~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~-~fR~E~g--------------- 255 (399)
||.++.. +++++|+||+|++++.+|+++++||++||++++++++ |||+|++
T Consensus 273 my~v~~~-------------~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~ 339 (613)
T PRK03991 273 QYRVKSD-------------KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMP 339 (613)
T ss_pred ceEecCC-------------CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEee
Confidence 9999754 4589999999999999999999999999999999999 9999986
Q ss_pred ----------------------------cCCccEEEEEeccCCC-------------------------Ccccc--ceec
Q psy10034 256 ----------------------------TKSIAYRVVNIVSGAL-------------------------NHAAA--KKLD 280 (399)
Q Consensus 256 ----------------------------~LgLpyrvv~~~sgdl-------------------------g~~a~--~~yd 280 (399)
.||++|+++..++++. |..+. .++|
T Consensus 340 D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie 419 (613)
T PRK03991 340 DMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVE 419 (613)
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEE
Confidence 8999999998776653 11112 2334
Q ss_pred eeeecCCCcccceEEEecC-cchhh-hhccccEEeccCCCCCceeEEEcccccccc-hHHHHHHHHHhcCCC----Ccee
Q psy10034 281 LEAWFPGSGAFRELVSCSN-CLDYQ-SRRLLVRYGQTKKMNEKIEFVHMLNATACA-TTRVICAILETHQTE----TGVR 353 (399)
Q Consensus 281 iE~w~P~~~~~~Ev~s~Sn-c~Dyq-a~rl~i~y~~~~~~~~~~~~vHtlngt~~a-i~R~i~allE~~q~~----~gi~ 353 (399)
+.+.+ +.++ ...|++ ..|++ +.||+++|.+.++....+..+| |++++ ++|+|+||||++.++ .|++
T Consensus 420 ~~~~d-~~gr---~~q~~T~qld~~~~~~f~l~y~d~~g~~~~Pviih---~~~~GsieR~i~aliE~~~~~~~~g~gl~ 492 (613)
T PRK03991 420 FAFID-SLGR---PIENPTVQIDVENAERFGIKYVDENGEEKYPIILH---CSPTGSIERVIYALLEKAAKEEEEGKVPM 492 (613)
T ss_pred EEEeC-CCCC---EEEEeeeecCcccchhCCCEEECCCCCEeeCEEEE---ECCEeHHHHHHHHHHHHhCCccccCceeE
Confidence 43332 2222 234442 45664 8999999998743222234455 44444 999999999999988 6799
Q ss_pred cCcccccccCC
Q psy10034 354 IPDCLRKFVPA 364 (399)
Q Consensus 354 iP~~L~py~~~ 364 (399)
||.||+|++.-
T Consensus 493 ~P~~lAP~qV~ 503 (613)
T PRK03991 493 LPTWLSPTQVR 503 (613)
T ss_pred cCccccCceEE
Confidence 99999999863
No 21
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.5e-37 Score=321.87 Aligned_cols=245 Identities=15% Similarity=0.194 Sum_probs=200.8
Q ss_pred CcCCCceeEeecCCcc--------------CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHH
Q psy10034 94 NEDENGIVRTKGDTEV--------------RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSK 159 (399)
Q Consensus 94 ~e~~n~~~~~~g~~~~--------------~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~ 159 (399)
|+++..+.|-||..-. .+.+||++||++++||+|++ .+|+|+++|+|.|++++++|++|+++.
T Consensus 105 ~~~~~~l~Riyg~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~---~~~~G~~~~lP~G~~i~~~L~~~~r~~ 181 (545)
T PRK14799 105 PNPNEQYVRIRGVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHE---EAGSGLVLFHPKGQTIRNELIAFMREI 181 (545)
T ss_pred CccCceeEEEEEeecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCccccc---ccCCcceEEcChHHHHHHHHHHHHHHH
Confidence 6667778888997531 26799999999999999986 378999999999999999999999999
Q ss_pred HHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCc
Q psy10034 160 WIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASL 239 (399)
Q Consensus 160 ~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~L 239 (399)
+.++||++|.||.|.+.++|..||||++|.++||.++.. +++++|+||+|++++.+|+++..||++|
T Consensus 182 ~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~-------------~e~~~LrPm~cp~~~~~~~~~~~SyrdL 248 (545)
T PRK14799 182 NDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNME-------------GDEYGVKPMNCPAHILIYKSKPRTYRDL 248 (545)
T ss_pred HHHcCCeEEECCccchHHHHhhccccccchhhcceeecc-------------CceEEeccCCCHHHHHHHhccccChhhC
Confidence 999999999999999999999999999999999998532 4689999999999999999999999999
Q ss_pred CceeeeeccccccCCc------------------------------------------cCCcc---EEEEEecc--CCC-
Q psy10034 240 PIRYLGVSTCFRQEDL------------------------------------------TKSIA---YRVVNIVS--GAL- 271 (399)
Q Consensus 240 Plk~~~~s~~fR~E~g------------------------------------------~LgLp---yrvv~~~s--gdl- 271 (399)
|+|++++++|||+|.+ .||++ |++...+- ..+
T Consensus 249 PlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G 328 (545)
T PRK14799 249 PIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIG 328 (545)
T ss_pred CHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcC
Confidence 9999999999999986 45553 44432110 001
Q ss_pred -----------------------------CccccceeceeeecCCCcccceEEEecCcchhh-hhccccEEeccCCCCCc
Q psy10034 272 -----------------------------NHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ-SRRLLVRYGQTKKMNEK 321 (399)
Q Consensus 272 -----------------------------g~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyq-a~rl~i~y~~~~~~~~~ 321 (399)
|+-...++|+++ .++.+++.+++++. .||| ++||+++|.+.++....
T Consensus 329 ~~~~wdka~~~l~~~L~~~gl~~~~~~g~gafygpkiD~~v-~dalgr~~q~~Tiq--ldf~lp~rf~Ley~~~~~~~~~ 405 (545)
T PRK14799 329 SDELWEKATNALISALQESGLKFGIKEKEGAFYGPKIDFEI-RDSLGRWWQLSTIQ--VDFNLPERFKLEYIDKDGIKKR 405 (545)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEecceeccccCccceEe-hhhcCchhhhhhhh--hhcCcccccceEEEcCCCCCcc
Confidence 111224678777 66777777777665 7998 99999999986543346
Q ss_pred eeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 322 IEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 322 ~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
+.++|+ |...+++|+|++|+|+|++ .+|.|++|.+.
T Consensus 406 pv~ihr--~~~GgiERli~iL~e~~~G----~~P~wlaP~qV 441 (545)
T PRK14799 406 PVMVHR--AIYGSIDRFVAILLEHFKG----KLPTWLSSVQV 441 (545)
T ss_pred cEEEEc--cCCCCHHHHHHHHHHHcCC----CCCCCCCCceE
Confidence 789997 4434599999999999876 69999999764
No 22
>KOG2324|consensus
Probab=100.00 E-value=1e-36 Score=294.46 Aligned_cols=223 Identities=20% Similarity=0.282 Sum_probs=198.2
Q ss_pred HHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEE
Q psy10034 116 VDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKV 195 (399)
Q Consensus 116 ~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i 195 (399)
.+|+...|+|. -+.+|+|-|+|.|.|+.++|.+.+...|++.|.+.|++|.+.+.++|++||+|+..+.+||++
T Consensus 28 q~LL~e~GfI~------ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl 101 (457)
T KOG2324|consen 28 QELLQEVGFIR------PSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRL 101 (457)
T ss_pred HHHHHHhCccc------cCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEe
Confidence 45999999996 366899999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcC-CCCCcCceeeeeccccccCCc-------------------
Q psy10034 196 IGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWL-PEASLPIRYLGVSTCFRQEDL------------------- 255 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~-sy~~LPlk~~~~s~~fR~E~g------------------- 255 (399)
.|++ +.+|||.||+|+.++++++..+- ||++||+++||++++||+|.+
T Consensus 102 ~Dr~------------gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsF 169 (457)
T KOG2324|consen 102 HDRK------------GKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSF 169 (457)
T ss_pred eccC------------CCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcc
Confidence 9984 57899999999999999988765 999999999999999999986
Q ss_pred -----------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhh--------
Q psy10034 256 -----------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ-------- 304 (399)
Q Consensus 256 -----------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyq-------- 304 (399)
+||+||..|.+++|++|+.-+|+|+ .++.-+.+-+.+|++|+ |.
T Consensus 170 d~~~etA~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG~iGG~vShEfh----l~~~vgED~l~~C~~C~-~s~n~e~~~~ 244 (457)
T KOG2324|consen 170 DSDEETAQQTYQLVDQAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFH----LIHPVGEDTLMSCPSCG-YSKNSEDLDL 244 (457)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCceeeeeEe----ccCccCccceeecCcCC-ccCchhhhcC
Confidence 8999999999999999999999996 45566677788888883 22
Q ss_pred --------------------------------hhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCce
Q psy10034 305 --------------------------------SRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGV 352 (399)
Q Consensus 305 --------------------------------a~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi 352 (399)
|.-|+++|.+. .++++++|+ .|.|++|+|+|+|.+|-..+++|+
T Consensus 245 sk~~~Cp~C~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~---~gKpe~l~M-gCyGIGVtRllaAa~evls~~~~l 320 (457)
T KOG2324|consen 245 SKIASCPKCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNV---EGKPEFLHM-GCYGIGVTRLLAAAAEVLSDDKGL 320 (457)
T ss_pred CccccCCcccCCCcccccceEEEEEEEeccccccccCceeeee---cCCcceEEe-cceeccHHHHHHHHHHHhcccccc
Confidence 22355555543 578899998 599999999999999999999999
Q ss_pred ecCcccccccCCc
Q psy10034 353 RIPDCLRKFVPAV 365 (399)
Q Consensus 353 ~iP~~L~py~~~~ 365 (399)
+||..|+||..-.
T Consensus 321 rwP~~iAPy~vcl 333 (457)
T KOG2324|consen 321 RWPSLIAPYKVCL 333 (457)
T ss_pred ccccccCcceeEE
Confidence 9999999998844
No 23
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-35 Score=302.26 Aligned_cols=231 Identities=17% Similarity=0.253 Sum_probs=206.8
Q ss_pred cCccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccc
Q psy10034 109 VRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF 188 (399)
Q Consensus 109 ~~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f 188 (399)
.++.-+|. |+.+.|+++. .++|+|.|+|.|.++.+++.++++++|.+.|.+||.+|.|++.++|+.+|||.+|
T Consensus 17 da~~~sh~-ll~rAg~i~~------~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f 89 (500)
T COG0442 17 DASEWSHQ-LLLRAGMIRK------PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGF 89 (500)
T ss_pred hhHHHHHH-HHHhcCceec------ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhc
Confidence 46677897 9999999994 5679999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-------------
Q psy10034 189 DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------- 255 (399)
Q Consensus 189 ~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------- 255 (399)
+++||++++++ +++|+|+||||+.++.|+++++.||+|||+++|||+++||+|.+
T Consensus 90 ~~El~~v~drg------------~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~m 157 (500)
T COG0442 90 GPELFRVKDRG------------DRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLM 157 (500)
T ss_pred chhhEEEEccC------------CceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeee
Confidence 99999999985 56899999999999999999999999999999999999999987
Q ss_pred -----------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhh
Q psy10034 256 -----------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSR 306 (399)
Q Consensus 256 -----------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~ 306 (399)
+|++.|+.+...+|.+|+..+++|+ +.||. ++..+|.+|.+.++..++
T Consensus 158 kdaySfh~~~e~a~~~y~~~~~~Y~~if~~i~l~~~~~~ad~g~~Gg~~S~eF~--~l~pd-~ge~qi~ts~~y~aN~e~ 234 (500)
T COG0442 158 KDAYSFHADEEDAEETYEKMLDAYSRIFLRLPLIFGPVPADEGFIGGSYSHEFE--ALMPD-GGEDQIATSHHYGANFEK 234 (500)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhCCceEEeecccCCCCCCccceEEE--EEccC-CCccEEEEecchHHhHHH
Confidence 8999999999999999999888774 57874 566888888877777777
Q ss_pred cc-ccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCc
Q psy10034 307 RL-LVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAV 365 (399)
Q Consensus 307 rl-~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~ 365 (399)
-+ .++|.+.. .+...++||. |.+...|.+++++-.|++++|++.|+.++|.+.-.
T Consensus 235 a~~~~~~~~~~--~~~~~~v~t~--s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~ 290 (500)
T COG0442 235 AFIDIKFEDEE--EGELEYVHTT--SYGISTRIIGAAILIHGDNEGLVLPPIVADIQVVI 290 (500)
T ss_pred hccCCCccccc--cccceEeccc--ceEEEeeeeeEEEEEecCCCCccCCchhccceEEE
Confidence 77 88887652 2567899995 66678899999999999999999999999988744
No 24
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=1.5e-33 Score=304.29 Aligned_cols=243 Identities=17% Similarity=0.235 Sum_probs=192.7
Q ss_pred cCCCceeEeecCCc--------------cCccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHH
Q psy10034 95 EDENGIVRTKGDTE--------------VRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKW 160 (399)
Q Consensus 95 e~~n~~~~~~g~~~--------------~~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~ 160 (399)
.++..+.|-||..- ..+.+||+.||++++||+|... ++|+++|+|.|++|+++|++|+++.+
T Consensus 260 ~~~~~lqRi~G~sfp~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~----~~G~~~~lP~g~~i~~~l~~~~~~~~ 335 (686)
T PLN02908 260 VDRESLQRVYGISFPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHEL----SPGSCFFLPHGARIYNKLMDFIREQY 335 (686)
T ss_pred CcchhhEEEeeeccCChHHHHHHHhhhhhccccCHHHHHHhcCCeeecCC----CCcceEEechHHHHHHHHHHHHHHHH
Confidence 44446677777542 1367899999999999999874 47899999999999999999999999
Q ss_pred HHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcC
Q psy10034 161 IEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLP 240 (399)
Q Consensus 161 ~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LP 240 (399)
.++||++|.||.|++.++|..||||++|.++||.++.. +++++|+||+|++++.+|+++..||++||
T Consensus 336 ~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~-------------~~~~~Lrp~~~~~~~~~~~~~~~s~r~LP 402 (686)
T PLN02908 336 WERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIE-------------KQEFGLKPMNCPGHCLMFAHRVRSYRELP 402 (686)
T ss_pred HHcCCEEEECCccccHHHHhhcCCccccchhccEEecC-------------CeeEEEcCCCcHHHHHHHhccccChhhCC
Confidence 99999999999999999999999999999999998532 46899999999999999999999999999
Q ss_pred ceeeeeccccccCCc------------------------------------------cCCccEEEEEeccCC---CC---
Q psy10034 241 IRYLGVSTCFRQEDL------------------------------------------TKSIAYRVVNIVSGA---LN--- 272 (399)
Q Consensus 241 lk~~~~s~~fR~E~g------------------------------------------~LgLpyrvv~~~sgd---lg--- 272 (399)
+|++++++|||+|++ .||++|++. +++.. +|
T Consensus 403 lr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~~~~~-ls~r~~~~~g~~~ 481 (686)
T PLN02908 403 LRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFTYELK-LSTRPEKYLGDLE 481 (686)
T ss_pred HhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCcEEEE-EeCCccccCCCHH
Confidence 999999999999986 899999974 44432 11
Q ss_pred cccc---------ceeceeeec--CCCc-------------ccceEEEecC-cchhh-hhccccEEeccCCC-CCceeEE
Q psy10034 273 HAAA---------KKLDLEAWF--PGSG-------------AFRELVSCSN-CLDYQ-SRRLLVRYGQTKKM-NEKIEFV 325 (399)
Q Consensus 273 ~~a~---------~~ydiE~w~--P~~~-------------~~~Ev~s~Sn-c~Dyq-a~rl~i~y~~~~~~-~~~~~~v 325 (399)
.+.. .+++.. |. |+.+ +..+...|++ +.||+ +.||++.|.+++.. ...+..+
T Consensus 482 ~w~~ae~~l~~~ld~~~~~-~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~e~~~~~~~pv~i 560 (686)
T PLN02908 482 TWDKAEAALTEALNAFGKP-WQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAEDEAKIERPVMI 560 (686)
T ss_pred HHHHHHHHHHHHHHHcCCC-cEECCCceeecccceEEEEEeccCCEeeccceeecccCHhhcCCEEECCCCCcCCCCEEE
Confidence 1110 011100 11 2221 2344556664 68897 68999999876432 2467899
Q ss_pred Ec-ccccccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 326 HM-LNATACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 326 Ht-lngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
|. +-| +++|++++|+|++.+ .||.|++|.+.
T Consensus 561 hrai~G---siERli~iL~e~~~g----~~p~wlsp~qv 592 (686)
T PLN02908 561 HRAILG---SVERMFAILLEHYAG----KWPFWLSPRQA 592 (686)
T ss_pred EeCceE---hHHHHHHHHHHHcCC----CCCCCCCCceE
Confidence 97 434 599999999999877 89999999754
No 25
>KOG1637|consensus
Probab=100.00 E-value=2.9e-34 Score=285.00 Aligned_cols=241 Identities=18% Similarity=0.240 Sum_probs=192.1
Q ss_pred ccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccc
Q psy10034 111 KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 190 (399)
Q Consensus 111 ~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~ 190 (399)
+.+||+.||++.+||.|... .+|.+||+|.|++++++|+.|++.+..++||+||.||.|.+..||+.||||..|.+
T Consensus 161 ~~rdHRkig~~qeLfff~~l----SPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~e 236 (560)
T KOG1637|consen 161 KKRDHRKIGKEQELFFFHEL----SPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSE 236 (560)
T ss_pred hhhhhhhhhhhhhheeeccC----CCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhh
Confidence 57899999999999999864 47889999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---------------
Q psy10034 191 ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--------------- 255 (399)
Q Consensus 191 ~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--------------- 255 (399)
+||.++.. .+++.|.||+|+.+|.||+.+.+||++||+|++.++..+|+|++
T Consensus 237 nmF~~e~e-------------ke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQD 303 (560)
T KOG1637|consen 237 NMFKFEVE-------------KEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQD 303 (560)
T ss_pred hceeeeec-------------hhhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeeccc
Confidence 99999864 35799999999999999999999999999999999999999987
Q ss_pred ---------------------------cCCccEEEEEeccCCCCccccceeceeeec--------------------CCC
Q psy10034 256 ---------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWF--------------------PGS 288 (399)
Q Consensus 256 ---------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~--------------------P~~ 288 (399)
-+|..|... ++|.. ...-.|+|+|. |+.
T Consensus 304 DaHIFCt~~Qi~~Eik~~l~fl~~vY~~fgf~f~l~-lSTRP----e~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GD 378 (560)
T KOG1637|consen 304 DAHIFCTPDQVKEEIKGCLDFLDYVYGVFGFTFKLN-LSTRP----EKFLGDLETWDEAEFKLEEALNESGEPWVLNPGD 378 (560)
T ss_pred CceEEecCccHHHHHHHHHHHHHHHHHhccccceeE-eccCh----HHhccCHHHHHHHHHHHHHHHHHhCCCceecCCC
Confidence 233333332 22221 11222444442 222
Q ss_pred c----------------ccceEEEecCcchhh-hhccccEEeccCCCCCceeEEEc-ccccccchHHHHHHHHHhcCCCC
Q psy10034 289 G----------------AFRELVSCSNCLDYQ-SRRLLVRYGQTKKMNEKIEFVHM-LNATACATTRVICAILETHQTET 350 (399)
Q Consensus 289 ~----------------~~~Ev~s~Snc~Dyq-a~rl~i~y~~~~~~~~~~~~vHt-lngt~~ai~R~i~allE~~q~~~ 350 (399)
+ ++.... +...||| ..||++.|.+.++....+++||. +-|| ++|+++.|+|+|.+
T Consensus 379 GAFYGPKIDi~l~Dal~r~hQca--TIQLDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGS---vERmiaiL~E~~~g-- 451 (560)
T KOG1637|consen 379 GAFYGPKIDITLDDALGRKHQCA--TIQLDFQLPIRFDLEYETEDGDLERPVMIHRAILGS---VERMIAILLESYGG-- 451 (560)
T ss_pred cccccceeeeEhhhhcCccccee--eeeecccChhhcCceeecccccccchhhHHHHHhhh---HHHHHHHHHHHhCC--
Confidence 2 222222 3357998 78999999987555577899998 6677 99999999999999
Q ss_pred ceecCcccccccCCcccCCcccccCccCCCCChHHHHHH
Q psy10034 351 GVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQ 389 (399)
Q Consensus 351 gi~iP~~L~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
.||-||.|+++- +||-.+...+-+.+-.+|
T Consensus 452 --kwPFWlSPRq~~-------vIpVse~~~~ya~~V~~q 481 (560)
T KOG1637|consen 452 --KWPFWLSPRQAV-------VIPVSEGPLDYATSVQKQ 481 (560)
T ss_pred --CCCeeeccceEE-------EEECCCcchhHHHHHHHH
Confidence 999999999972 567665544444444333
No 26
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.4e-32 Score=290.62 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=190.5
Q ss_pred CcCCCceeEeecCCcc--------------CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHH
Q psy10034 94 NEDENGIVRTKGDTEV--------------RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSK 159 (399)
Q Consensus 94 ~e~~n~~~~~~g~~~~--------------~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~ 159 (399)
|+++..+.|-+|..-. .+.+||++||+++|||+|++ .++|+++|+|.|+.+.+.|++|+++.
T Consensus 212 ~~~~~~l~Ri~g~a~~~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~----~~~G~~~~~p~g~~~~~~i~~~~~~~ 287 (639)
T PRK12444 212 DSNNQVLQRIYGVAFSSQKELEEYLHFVEEAAKRNHRKLGKELELFMFSE----EAPGMPFYLPKGQIIRNELEAFLREI 287 (639)
T ss_pred CCCCcceEEEEEEecCCHHHHHHHHHHHHHhccCCHHHHHHHcCCccccc----ccCcceEEeeCHHHHHHHHHHHHHHH
Confidence 4445566677785421 25789999999999999986 36789999999999999999999999
Q ss_pred HHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCc
Q psy10034 160 WIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASL 239 (399)
Q Consensus 160 ~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~L 239 (399)
+.++||++|.+|.|++.++|.+||||+.|+++||.+ +.+ +++++|+||+|++++.+|++++.||++|
T Consensus 288 ~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~-d~~------------~~~~~LrP~~~~~~~~~~~~~~~sy~~L 354 (639)
T PRK12444 288 QKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFS-EVD------------NKSFALKPMNCPGHMLMFKNKLHSYREL 354 (639)
T ss_pred HHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCee-cCC------------CcEEEEccCCCHHHHHHHhCcccChhhC
Confidence 999999999999999999999999999999999955 331 4679999999999999999999999999
Q ss_pred CceeeeeccccccCCc------------------------------------------cCCccEEEEEeccCC---CCcc
Q psy10034 240 PIRYLGVSTCFRQEDL------------------------------------------TKSIAYRVVNIVSGA---LNHA 274 (399)
Q Consensus 240 Plk~~~~s~~fR~E~g------------------------------------------~LgLpyrvv~~~sgd---lg~~ 274 (399)
|+|++++++|||+|.+ .||++|++ .++++. +|..
T Consensus 355 P~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl~~~~-~~~~r~~~~~G~~ 433 (639)
T PRK12444 355 PIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFEYEV-ELSTRPEDSMGDD 433 (639)
T ss_pred CceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCCcEEE-EEECCccccCCCH
Confidence 9999999999999983 89999986 454432 4442
Q ss_pred c----------------------------cceeceeeecCCCcccceEEEecC-cchhh-hhccccEEeccCCCCCceeE
Q psy10034 275 A----------------------------AKKLDLEAWFPGSGAFRELVSCSN-CLDYQ-SRRLLVRYGQTKKMNEKIEF 324 (399)
Q Consensus 275 a----------------------------~~~ydiE~w~P~~~~~~Ev~s~Sn-c~Dyq-a~rl~i~y~~~~~~~~~~~~ 324 (399)
+ .+.--+|+-+.+..+ ++ ..|+. +.||+ +.||+++|.+.++....|..
T Consensus 434 e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~-~~-~~~~t~~~d~~~~~~f~l~~~~~~g~~~~P~i 511 (639)
T PRK12444 434 ELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALN-RS-HQCGTIQLDFQMPEKFDLNYIDEKNEKRRPVV 511 (639)
T ss_pred HHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCC-Ch-hcccceeeecccccccceEEECCCCCccccEE
Confidence 1 111122322222111 11 22332 45774 89999999987654456778
Q ss_pred EEcccccccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 325 VHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 325 vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
+|+ +.+++++|+|++|+|++.+ .+|.|++|.+.
T Consensus 512 ~~~--~~~g~ieRli~~L~e~~~~----~~p~~~ap~qV 544 (639)
T PRK12444 512 IHR--AVLGSLDRFLAILIEHFGG----AFPAWLAPVQV 544 (639)
T ss_pred EEE--CCCCCHHHHHHHHHHhcCC----CCCCccCCceE
Confidence 997 4444799999999999865 89999999875
No 27
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-32 Score=287.63 Aligned_cols=248 Identities=19% Similarity=0.248 Sum_probs=201.4
Q ss_pred CcCCCceeEeecCCcc--------------CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHH
Q psy10034 94 NEDENGIVRTKGDTEV--------------RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSK 159 (399)
Q Consensus 94 ~e~~n~~~~~~g~~~~--------------~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~ 159 (399)
|+++....+.||..-. ...+||++||+++++|.|+.. .|+|+++|+|.|+.+.+.|++|++..
T Consensus 157 ~~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~---~~~G~~~~~pkG~~ir~~le~y~~~~ 233 (589)
T COG0441 157 DENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPE---EGPGLPFWHPKGATIRNLLEDYVRTK 233 (589)
T ss_pred CCCCcceeEEeccccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeeccc---cCCcceEECCCcccHHHHHHHHHHHH
Confidence 4555667788887531 257899999999999999852 68999999999999999999999999
Q ss_pred HHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCc
Q psy10034 160 WIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASL 239 (399)
Q Consensus 160 ~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~L 239 (399)
+...||++|.||.|+..++|+.||||+.|+++||.+... +++|+|.||+|+.++.+|++...|||+|
T Consensus 234 ~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~-------------~~~~~lKpmNCpgh~~ifk~~~~SYR~L 300 (589)
T COG0441 234 LRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESD-------------DREYALKPMNCPGHILIFKSGLRSYREL 300 (589)
T ss_pred HHhcCceEecCCeeeecccchhccchhhccccceeeccC-------------ChhheeeeccCHhHHHHHhcCCcceecc
Confidence 999999999999999999999999999999999998754 3689999999999999999999999999
Q ss_pred CceeeeeccccccCCc------------------------------------------cCCcc-EEEEEeccCC--CCcc
Q psy10034 240 PIRYLGVSTCFRQEDL------------------------------------------TKSIA-YRVVNIVSGA--LNHA 274 (399)
Q Consensus 240 Plk~~~~s~~fR~E~g------------------------------------------~LgLp-yrvv~~~sgd--lg~~ 274 (399)
|+|++++|.|||.|.+ .+|+. |++ .+++.+ +|..
T Consensus 301 P~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~-~ls~r~k~ig~d 379 (589)
T COG0441 301 PLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEV-KLSTRPKFIGSD 379 (589)
T ss_pred chhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEE-EEecCCcccCCh
Confidence 9999999999999986 78987 665 566664 2211
Q ss_pred ------------ccceeceeeec-CCCccc-------------ceEEEecC-cchhh-hhccccEEeccCCCCCceeEEE
Q psy10034 275 ------------AAKKLDLEAWF-PGSGAF-------------RELVSCSN-CLDYQ-SRRLLVRYGQTKKMNEKIEFVH 326 (399)
Q Consensus 275 ------------a~~~ydiE~w~-P~~~~~-------------~Ev~s~Sn-c~Dyq-a~rl~i~y~~~~~~~~~~~~vH 326 (399)
+.....++.+. |+.+.| +....|++ ..||+ ++||++.|.+.++....|.++|
T Consensus 380 ~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d~~~~~PvmiH 459 (589)
T COG0441 380 EMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDEDGEKKRPVIIH 459 (589)
T ss_pred hhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhhceEEEEcCCCCccCCEEEE
Confidence 11223333332 223222 12234554 46886 7899999999776667889999
Q ss_pred c-ccccccchHHHHHHHHHhcCCCCceecCcccccccCCc
Q psy10034 327 M-LNATACATTRVICAILETHQTETGVRIPDCLRKFVPAV 365 (399)
Q Consensus 327 t-lngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~ 365 (399)
. +.|| ++|+|++|||+|.+ .+|.||+|-+.-.
T Consensus 460 rai~GS---iERfi~iLiE~~~G----~~P~WLaPvQv~V 492 (589)
T COG0441 460 RAILGS---IERFIGILLEHYAG----ALPTWLAPVQVRV 492 (589)
T ss_pred eccchh---HHHHHHHHHHhccC----CCcccCCccEEEE
Confidence 8 5455 99999999999998 9999999998744
No 28
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.97 E-value=9.1e-31 Score=277.46 Aligned_cols=229 Identities=17% Similarity=0.186 Sum_probs=186.0
Q ss_pred ccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccc
Q psy10034 111 KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 190 (399)
Q Consensus 111 ~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~ 190 (399)
+.+||++||+++|||||+++ +|+|+++|+|.|++++++|++++++.+.++||++|.+|.|.+.++|..+|||+.|.+
T Consensus 168 ~~~dH~~l~~~~~l~~~~~~---~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~ 244 (563)
T TIGR00418 168 KKRDHRKLGKELELFSFEPE---IGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKE 244 (563)
T ss_pred hcCCHHHHHHhCCCcccCcc---cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchh
Confidence 46799999999999999865 689999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---------------
Q psy10034 191 ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--------------- 255 (399)
Q Consensus 191 ~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--------------- 255 (399)
+||.+.+.+ ++.++|+||+|++++.+|.+..++|++||+|++++|+|||+|++
T Consensus 245 emy~~~d~~------------~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~ 312 (563)
T TIGR00418 245 RMFPFTELD------------NREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQD 312 (563)
T ss_pred hcceeccCC------------CceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEe
Confidence 999998753 46899999999999999999999999999999999999999964
Q ss_pred ---------------------------cCCccEEEEEeccCCC----Ccc------------------------------
Q psy10034 256 ---------------------------TKSIAYRVVNIVSGAL----NHA------------------------------ 274 (399)
Q Consensus 256 ---------------------------~LgLpyrvv~~~sgdl----g~~------------------------------ 274 (399)
.||+++..+.+++++. |..
T Consensus 313 ~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~ 392 (563)
T TIGR00418 313 DAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAF 392 (563)
T ss_pred eeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcce
Confidence 7999998888887743 110
Q ss_pred ccceeceeeecCCCcccceEEEecCcchhh-hhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCcee
Q psy10034 275 AAKKLDLEAWFPGSGAFRELVSCSNCLDYQ-SRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVR 353 (399)
Q Consensus 275 a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyq-a~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~ 353 (399)
-..++|+|+ ..+.++..+++++ ..|+. +.|+++.|.+..+....|.++|+ |.+++++|+|++|+|++.+ .
T Consensus 393 y~~~~~f~~-~~~lg~~~~~~t~--q~~~~~g~ryd~~~~~~~g~~~~p~ii~~--Gfa~gieRli~~l~e~~~~----~ 463 (563)
T TIGR00418 393 YGPKIDFAF-KDALGREWQCATV--QLDFELPERFDLTYVDEDNEEKRPVMIHR--AILGSIERFIAILLEKYAG----N 463 (563)
T ss_pred ecceEEEEe-ecCCCCceeecee--eeccCCHhhcCCEEECCCCCEEeeEEEEe--eccCcHHHHHHHHHHhccC----C
Confidence 011234442 2222222233322 24554 78999999876443344567787 7777899999999998765 6
Q ss_pred cCcccccccC
Q psy10034 354 IPDCLRKFVP 363 (399)
Q Consensus 354 iP~~L~py~~ 363 (399)
+|.|++|...
T Consensus 464 ~p~~~~p~~v 473 (563)
T TIGR00418 464 FPLWLAPVQV 473 (563)
T ss_pred CCCcCCCceE
Confidence 8888888764
No 29
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=7.3e-32 Score=286.51 Aligned_cols=227 Identities=18% Similarity=0.233 Sum_probs=186.7
Q ss_pred ccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccc
Q psy10034 111 KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 190 (399)
Q Consensus 111 ~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~ 190 (399)
+.+||++|++++|||+++. .+|+|+++|+|.|+++.++|++++++.+.++||++|.||.|.+.++|..+|||+.|.+
T Consensus 174 ~~~dh~~l~~~~~l~~~~~---~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~ 250 (575)
T PRK12305 174 KKRDHRKLGKELDLFSFPD---EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKE 250 (575)
T ss_pred hhccHHHHHHhcCcccccc---ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchh
Confidence 4679999999999999986 4799999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---------------
Q psy10034 191 ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--------------- 255 (399)
Q Consensus 191 ~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--------------- 255 (399)
+||.+.+.+ +++++|+||+|++++.++.+...||++||+|++++++|||+|.+
T Consensus 251 ~my~~~d~~------------~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~ 318 (575)
T PRK12305 251 NMFPPMEID------------EEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQD 318 (575)
T ss_pred hcccccccC------------CceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEc
Confidence 999997652 46899999999999999999999999999999999999999964
Q ss_pred ---------------------------cCCccEEEEEeccCCCCcccccee--ceeeecCCCcccc--------------
Q psy10034 256 ---------------------------TKSIAYRVVNIVSGALNHAAAKKL--DLEAWFPGSGAFR-------------- 292 (399)
Q Consensus 256 ---------------------------~LgLpyrvv~~~sgdlg~~a~~~y--diE~w~P~~~~~~-------------- 292 (399)
.||++...+.++++++ .+| +.|+|.++.+.+.
T Consensus 319 ~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~-----~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~ 393 (575)
T PRK12305 319 DAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELSTREP-----EKYVGDDEVWEKATEALREALEELGLEYVEDP 393 (575)
T ss_pred ceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCh-----hhccCCHHHHHHHHHHHHHHHHhcCCCcEecC
Confidence 7999966677888774 222 4455543222111
Q ss_pred -------------------eEEEecC-cchhh-hhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCc
Q psy10034 293 -------------------ELVSCSN-CLDYQ-SRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG 351 (399)
Q Consensus 293 -------------------Ev~s~Sn-c~Dyq-a~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~g 351 (399)
....|+. +.||+ +.||+++|.+.++....|.++|. |.+..++|+|++|+|+|.+
T Consensus 394 ~~~~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~~~~~~p~~ih~--~~~G~~eRl~~~l~e~~~~--- 468 (575)
T PRK12305 394 GGAAFYGPKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGKRQRPVMIHR--ALFGSIERFIGILTEHYAG--- 468 (575)
T ss_pred CCcccccccEEEEeeccCCCceeccceeeecccHhhCCCEEECCCCCccCceEEEc--cccccHHHHHHHHHHHhCC---
Confidence 1112222 34564 67999999876544445779997 4444699999999999887
Q ss_pred eecCcccccccC
Q psy10034 352 VRIPDCLRKFVP 363 (399)
Q Consensus 352 i~iP~~L~py~~ 363 (399)
.||.|++|++.
T Consensus 469 -~~p~~~~p~~v 479 (575)
T PRK12305 469 -AFPFWLAPVQV 479 (575)
T ss_pred -CCCCCCCCccE
Confidence 89999999864
No 30
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.96 E-value=1.8e-29 Score=238.12 Aligned_cols=186 Identities=19% Similarity=0.263 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChH
Q psy10034 145 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQP 224 (399)
Q Consensus 145 ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~ 224 (399)
|+++.++|++++++.+.+.||++|.+|.|.+.++|..+||++.|.++||.+.+.+.. ..+++++|+||+|++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~LrP~~~~~ 72 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRE--------LRDTDLVLRPAACEP 72 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCccc--------ccCCeEEEecCCCHH
Confidence 689999999999999999999999999999999999999999999999999865210 013579999999999
Q ss_pred HHHHHhcCcCCCCCcCceeeeeccccccCCc-----------------------------------------cCCccEEE
Q psy10034 225 ICAVHRDSWLPEASLPIRYLGVSTCFRQEDL-----------------------------------------TKSIAYRV 263 (399)
Q Consensus 225 ~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g-----------------------------------------~LgLpyrv 263 (399)
++.++++.+.+|++||++++++++|||+|.+ .||++|++
T Consensus 73 i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~~~i 152 (235)
T cd00670 73 IYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRV 152 (235)
T ss_pred HHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9999999999999999999999999999975 79999999
Q ss_pred EEeccCCCC--------ccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccch
Q psy10034 264 VNIVSGALN--------HAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACAT 335 (399)
Q Consensus 264 v~~~sgdlg--------~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai 335 (399)
+..+.++++ +.+..++|+|+|+|..+++.+|+++|+|.|+++++..+++.. ++...++|+++++ +++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~ 227 (235)
T cd00670 153 VVADDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDE----DGGGRAHTGCGGA-GGE 227 (235)
T ss_pred EEccChhhccCCccccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEcc----CCCceeeEEEeCc-cHH
Confidence 999999988 778899999999998789999999999999999988887543 2445689998777 789
Q ss_pred HHHHHHHH
Q psy10034 336 TRVICAIL 343 (399)
Q Consensus 336 ~R~i~all 343 (399)
+|+|+|||
T Consensus 228 eR~l~all 235 (235)
T cd00670 228 ERLVLALL 235 (235)
T ss_pred HHHHHHHC
Confidence 99999986
No 31
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.95 E-value=3.1e-28 Score=220.52 Aligned_cols=129 Identities=29% Similarity=0.558 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHH-HcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHH
Q psy10034 148 LQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPIC 226 (399)
Q Consensus 148 l~~aL~~~~~d~~~-~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~ 226 (399)
|+++|++|+++++. +.||++|.+|.|++.++|.++||++.|.++||.+.+.+ ++++||+||+|++++
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~------------~~~~~L~pt~~~~~~ 68 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRG------------DEEYCLRPTSEPGIY 68 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETT------------TEEEEE-SSSHHHHH
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecc------------cccEEecccccccee
Confidence 68999999999999 99999999999999999999999999999999998752 346999999999999
Q ss_pred HHHhcCcCC-CCCcCceeeeeccccccCCc-----------------------------------------cCCc-cEEE
Q psy10034 227 AVHRDSWLP-EASLPIRYLGVSTCFRQEDL-----------------------------------------TKSI-AYRV 263 (399)
Q Consensus 227 ~l~~~~i~s-y~~LPlk~~~~s~~fR~E~g-----------------------------------------~LgL-pyrv 263 (399)
.++++...+ |++||++++++|+|||+|++ .||| +|++
T Consensus 69 ~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~ 148 (173)
T PF00587_consen 69 SLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRI 148 (173)
T ss_dssp HHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEE
T ss_pred eeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 999999999 99999999999999999965 8999 9999
Q ss_pred EEeccCCCCccccceeceeeecCCC
Q psy10034 264 VNIVSGALNHAAAKKLDLEAWFPGS 288 (399)
Q Consensus 264 v~~~sgdlg~~a~~~ydiE~w~P~~ 288 (399)
+..+++++++.+++++|+|+|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~d~e~~~~~~ 173 (173)
T PF00587_consen 149 VLSSSGELGAYAKYEFDIEAWFPAQ 173 (173)
T ss_dssp EEEETCTSCTTSSEEEEEEEEETCC
T ss_pred EEcCCCccCCCHHHcccHHHhCcCC
Confidence 9999999999999999999999985
No 32
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.95 E-value=3.9e-27 Score=243.31 Aligned_cols=248 Identities=19% Similarity=0.192 Sum_probs=181.8
Q ss_pred HHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHH--cCCeEecCCccccHHHHHHhcCcccccccce
Q psy10034 116 VDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIE--KGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 193 (399)
Q Consensus 116 ~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~--~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f 193 (399)
.+++++.|++-...-.=-.=+|+|.|+|.|++|.+.|++|+++.+.. .||.+|.+|.|++.++|+.||||++|.|.||
T Consensus 8 ~~~~~~~~~~~~s~~iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~ 87 (456)
T PRK04173 8 VSLAKRRGFVFPSSEIYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLV 87 (456)
T ss_pred HHHHHhcCCeeeccccccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCcee
Confidence 35677777765432110012689999999999999999999998876 7999999999999999999999999999999
Q ss_pred EEeccC---------cc-----------------------CCCCCC-------------------CCCCCCCeeeeCCCC
Q psy10034 194 KVIGKG---------EK-----------------------VGDSAP-------------------EKDELDDKYLIATSE 222 (399)
Q Consensus 194 ~i~~~~---------~~-----------------------~~~~~~-------------------~~~~~~~~~L~pTsE 222 (399)
.....+ ++ -|.... .+..+...||+|+.+
T Consensus 88 ~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpeta 167 (456)
T PRK04173 88 ECKKCKKRYRADHLIEELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETA 167 (456)
T ss_pred EeCCCCCEeechhhhHHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccc
Confidence 874211 00 011110 002234678999666
Q ss_pred hHHHHHHhcCcCCCC-CcCceeeeeccccccCCc-----------------------------------------cCCcc
Q psy10034 223 QPICAVHRDSWLPEA-SLPIRYLGVSTCFRQEDL-----------------------------------------TKSIA 260 (399)
Q Consensus 223 ~~~~~l~~~~i~sy~-~LPlk~~~~s~~fR~E~g-----------------------------------------~LgLp 260 (399)
+.+...|++...||+ +||++++++++|||+|++ .||++
T Consensus 168 qg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~ 247 (456)
T PRK04173 168 QGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGID 247 (456)
T ss_pred hhHHHHHHHHHHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCC
Confidence 666666889999999 999999999999999986 78987
Q ss_pred ---EEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhh------hccccEEeccCCCCCceeEEEccccc
Q psy10034 261 ---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQS------RRLLVRYGQTKKMNEKIEFVHMLNAT 331 (399)
Q Consensus 261 ---yrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa------~rl~i~y~~~~~~~~~~~~vHtlngt 331 (399)
+++...+.+++...+...||+|+++|....|.|+++|..++||.- .++++.|.+.. .+++....|++.-+
T Consensus 248 ~~~~~~s~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~-~~~~~~~P~vi~~s 326 (456)
T PRK04173 248 PENLRFREHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYFDDE-TTGEKYIPYVIEPS 326 (456)
T ss_pred ccceEEEecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEEecC-CCCceeeeEEEEec
Confidence 666555556677677789999999997667999888888999963 37899998321 12333334443222
Q ss_pred ccchHHHHHHHHHhc-CCC--------CceecCcccccccCCc
Q psy10034 332 ACATTRVICAILETH-QTE--------TGVRIPDCLRKFVPAV 365 (399)
Q Consensus 332 ~~ai~R~i~allE~~-q~~--------~gi~iP~~L~py~~~~ 365 (399)
++++|+++|||+.+ .+. .|+.||.||+|++.-.
T Consensus 327 -iGieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~I 368 (456)
T PRK04173 327 -AGLDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAV 368 (456)
T ss_pred -ccHHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEE
Confidence 46999877776654 331 2379999999998633
No 33
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.94 E-value=8.6e-26 Score=242.79 Aligned_cols=229 Identities=19% Similarity=0.248 Sum_probs=178.6
Q ss_pred ccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccc
Q psy10034 111 KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 190 (399)
Q Consensus 111 ~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~ 190 (399)
+.++|.+|++++++++|...+ +|+++|+|.|+++.++|++++++.+.++||++|.||.|...++|..+|||+.|.+
T Consensus 239 ~~~~h~~l~~~~~~~~~~~~~----~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~ 314 (638)
T PRK00413 239 KKRDHRKLGKELDLFHFQEEA----PGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRE 314 (638)
T ss_pred ccccHHHHHHhcCEEEecCCC----CcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhh
Confidence 457999999999999998754 6899999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---------------
Q psy10034 191 ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--------------- 255 (399)
Q Consensus 191 ~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--------------- 255 (399)
+||.+.+.+ ++.++|+||+|++++-+|.+...+|++||+|++++|+|||+|.+
T Consensus 315 ~my~~~d~~------------~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~ 382 (638)
T PRK00413 315 NMFPTTESD------------GEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQD 382 (638)
T ss_pred ccceeecCC------------CcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEe
Confidence 999997652 46899999999999999999999999999999999999999964
Q ss_pred ---------------------------cCCc-cEEEEEecc---CCCCccccc--------------eeceeeecCCCc-
Q psy10034 256 ---------------------------TKSI-AYRVVNIVS---GALNHAAAK--------------KLDLEAWFPGSG- 289 (399)
Q Consensus 256 ---------------------------~LgL-pyrvv~~~s---gdlg~~a~~--------------~ydiE~w~P~~~- 289 (399)
.||+ +|++ .+.+ +.+|..... .++.+. .++..
T Consensus 383 ~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~~~~i-~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~~ 460 (638)
T PRK00413 383 DAHIFCTPEQIEEEVKKVIDLILDVYKDFGFEDYEV-KLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEI-APGEGA 460 (638)
T ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEE-EEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCcee-cCCccc
Confidence 6888 4555 3444 223333210 001110 01111
Q ss_pred ------------ccceEEEec-Ccchhh-hhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecC
Q psy10034 290 ------------AFRELVSCS-NCLDYQ-SRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIP 355 (399)
Q Consensus 290 ------------~~~Ev~s~S-nc~Dyq-a~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP 355 (399)
..++...|+ ...||+ +++|++.|.+..+....+.++|. |.+.+++|+|++|+|++.+ .||
T Consensus 461 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~dl~Yt~~~~~~~~p~~i~~--~~~g~~eRli~~l~e~~~~----~~p 534 (638)
T PRK00413 461 FYGPKIDFQLKDALGREWQCGTIQLDFNLPERFDLTYVGEDGEKHRPVMIHR--AILGSMERFIGILIEHYAG----AFP 534 (638)
T ss_pred cccceEEEEeecCCCCeEEeccEeecccChhhcCCEEECCCCCccCcEEEEe--cceehHHHHHHHHHHHcCC----CCC
Confidence 112223333 245675 78999999876433345678886 4445699999999999987 799
Q ss_pred cccccccC
Q psy10034 356 DCLRKFVP 363 (399)
Q Consensus 356 ~~L~py~~ 363 (399)
.|++|.+.
T Consensus 535 ~~~~p~~v 542 (638)
T PRK00413 535 TWLAPVQV 542 (638)
T ss_pred cccCcceE
Confidence 99999864
No 34
>KOG4163|consensus
Probab=99.80 E-value=7.8e-20 Score=180.92 Aligned_cols=231 Identities=17% Similarity=0.159 Sum_probs=193.5
Q ss_pred HHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhc-CcccccccceE
Q psy10034 116 VDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA-QLAQFDEELYK 194 (399)
Q Consensus 116 ~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg-~~~~f~~~~f~ 194 (399)
.++..+.+++++-+ + +|.|++.|.+..+..++..|+-.+..+.|-+.++.|.+|+.+++++-. |.++|..++-.
T Consensus 73 ~qVitk~emieYyd---v--sGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAw 147 (551)
T KOG4163|consen 73 SQVITKGEMIEYYD---V--SGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAW 147 (551)
T ss_pred HHHhhhhhhheeec---c--cceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEE
Confidence 45677777777654 2 578999999999999999999999999999999999999999999855 99999999999
Q ss_pred EeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-------------------
Q psy10034 195 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------------- 255 (399)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------------- 255 (399)
|.-.+. +++ .+..+.+||||.-+.-+|+.++.|||||||++.|+..+-|+|-.
T Consensus 148 VTr~G~-------seL-eepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTA 219 (551)
T KOG4163|consen 148 VTRAGN-------SEL-EEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTA 219 (551)
T ss_pred EEecCC-------ccc-ccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcch
Confidence 975532 233 35689999999999999999999999999999999999999976
Q ss_pred ------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccE
Q psy10034 256 ------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVR 311 (399)
Q Consensus 256 ------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~ 311 (399)
-|-+|+..-.-+..+-.+..-.++.||+++|..++-..-.+..+.+..+|+-|+|.
T Consensus 220 fat~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~ 299 (551)
T KOG4163|consen 220 FATPEEAEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIV 299 (551)
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCcceEEEeeeeccccccccccchhhhhHHHHHhhcee
Confidence 46666655555555666667789999999998876655555555677889999999
Q ss_pred EeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 312 YGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 312 y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
|.+. .++...||+. |.-| .++|+|++++..|+++.|+++|+.++|.+.
T Consensus 300 ~ed~--~~g~~~fv~Q-nSWg-~sTRtiGvmiM~HgDdkGLvLPPrVA~vQv 347 (551)
T KOG4163|consen 300 FEDP--GEGEKEFVWQ-NSWG-LSTRTIGVMIMTHGDDKGLVLPPRVAPVQV 347 (551)
T ss_pred ecCC--Cccchhheee-cccc-cccceeeEEEEEecCCcccccCCcccceEE
Confidence 9876 3466789997 4444 578999999999999999999999999987
No 35
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.60 E-value=1.9e-14 Score=150.67 Aligned_cols=186 Identities=16% Similarity=0.110 Sum_probs=135.1
Q ss_pred HHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHH-HcCCeEecCCccccHHHHHHhcCcccccccceE
Q psy10034 116 VDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK 194 (399)
Q Consensus 116 ~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~-~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~ 194 (399)
.+|+++.|++....-.=-.-+|+|-|.|.|++|.++|++..++.+. ..|+.+|.+|.|++..+|..||||+.|.|-|..
T Consensus 7 ~~l~~rrgf~~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~mv~ 86 (551)
T TIGR00389 7 MSLLKRRGFVFQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMVD 86 (551)
T ss_pred HHHHHhcCCccccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCceee
Confidence 4688899988643111001469999999999999999999999874 778999999999999999999999999986654
Q ss_pred EeccCc---------------------------------cCCCCCC-----------------CCCCCCCeeeeCCCChH
Q psy10034 195 VIGKGE---------------------------------KVGDSAP-----------------EKDELDDKYLIATSEQP 224 (399)
Q Consensus 195 i~~~~~---------------------------------~~~~~~~-----------------~~~~~~~~~L~pTsE~~ 224 (399)
-...+. ..|..++ .+..+..-||+|=..++
T Consensus 87 ~~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQG 166 (551)
T TIGR00389 87 CKSCKERFRADHLIEEKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQG 166 (551)
T ss_pred cCCCCCEecchHHHHHHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchh
Confidence 211110 0010111 11112346788866665
Q ss_pred HHHHHhc-CcCCCCCcCceeeeeccccccCCc------------------------------------------------
Q psy10034 225 ICAVHRD-SWLPEASLPIRYLGVSTCFRQEDL------------------------------------------------ 255 (399)
Q Consensus 225 ~~~l~~~-~i~sy~~LPlk~~~~s~~fR~E~g------------------------------------------------ 255 (399)
+.-=|++ .-.+-..||+-++|+|..||+|++
T Consensus 167 iFvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~~~~ 246 (551)
T TIGR00389 167 IFINFKRLLQFFRRKLPFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQMQES 246 (551)
T ss_pred hHHhHHHHHHhcCCCCCeeehhhhHhhhcccCcccceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchhhhc
Confidence 4433343 333566999999999999999986
Q ss_pred ----------------------------cCCcc---EEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchh
Q psy10034 256 ----------------------------TKSIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDY 303 (399)
Q Consensus 256 ----------------------------~LgLp---yrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dy 303 (399)
++|++ .|.-.-...+|...|..++|+|+..|. +|.|++-|.+-+||
T Consensus 247 ~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~--Gw~E~~G~a~R~~y 323 (551)
T TIGR00389 247 GIGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPY--GWIECVGIADRGDY 323 (551)
T ss_pred cHHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCC--CcEEEEEecccccc
Confidence 56663 455555667788888999999999974 79999999887777
No 36
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.58 E-value=8.2e-16 Score=147.90 Aligned_cols=165 Identities=18% Similarity=0.103 Sum_probs=125.5
Q ss_pred HHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcC--CeEecCCccccHHHHHHhcCcccccccce
Q psy10034 116 VDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKG--YTPLYTPFFMRKEVMQEVAQLAQFDEELY 193 (399)
Q Consensus 116 ~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~G--y~ev~~P~l~~~~l~~~sg~~~~f~~~~f 193 (399)
.+|+++.|++.....+--..+|++.|+|.|++|.++|++++++.+.+.| |++|.+|.|.+.+ ||
T Consensus 2 ~~l~~~~g~~~~~~eiy~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~--------------mf 67 (254)
T cd00774 2 VELAKRRGFVFPSSEIYGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPEL--------------MF 67 (254)
T ss_pred HhHHhhcCCcccChhhccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHH--------------Hh
Confidence 3588889988643211112479999999999999999999999999885 9999999999994 44
Q ss_pred EEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCC-CCcCceeeeeccccccCCc-----------------
Q psy10034 194 KVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPE-ASLPIRYLGVSTCFRQEDL----------------- 255 (399)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy-~~LPlk~~~~s~~fR~E~g----------------- 255 (399)
.+.... .+..+.+++|+|+.++.++..+.+...++ ++||++++|+++|||+|.+
T Consensus 68 ~~~~g~--------~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~ 139 (254)
T cd00774 68 KTSIGP--------VESGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIE 139 (254)
T ss_pred eeeecc--------cCCCCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhhee
Confidence 443100 00013478999988877666656655555 5999999999999999984
Q ss_pred ------------------------cCCc---cEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhh
Q psy10034 256 ------------------------TKSI---AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ 304 (399)
Q Consensus 256 ------------------------~LgL---pyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyq 304 (399)
++|+ .+|....++.+++.-+...+|+++..| .+|.|+..+++.+|+.
T Consensus 140 ~f~~~~~~~e~~~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~a~ya~~~~d~~~~~~--~~w~e~~Gi~~~~~~~ 213 (254)
T cd00774 140 FFVDPEKSHPWFDYWADQRLKWLPKFAQSPENLRLTDHEKEELAHYANETLDYFYAFP--HGFLELEGIANRGDRF 213 (254)
T ss_pred eeECCCCchHHHHHHHHHHHHHHHHcCCCccceEEEecccHhhhhhhHHHHHHHHHHh--hhHHHHcCCCcchhHH
Confidence 6774 467777788889988888999987775 4688888888887763
No 37
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=99.56 E-value=7.3e-15 Score=123.33 Aligned_cols=69 Identities=38% Similarity=0.509 Sum_probs=62.5
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPV 74 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~ 74 (399)
|||+++||+ |||.|++++++||.....||+|+++|++||+++++++.|+++||.+|++|+++++++++.
T Consensus 1 MLDik~ir~----n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~ 69 (108)
T PF02403_consen 1 MLDIKLIRE----NPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDA 69 (108)
T ss_dssp --SHHHHHH----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCT
T ss_pred CCCHHHHHh----CHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccH
Confidence 999999999 999999999999866667999999999999999999999999999999999999887443
No 38
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.55 E-value=3.2e-14 Score=130.75 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAV 228 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l 228 (399)
...+++.+++.+.+.||+||.+|.|++.+.+...|..+ +.++.+.+. .++.++|+||.+.++..+
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~---~~~~~~~~~------------~~~~~~LR~s~~~~l~~~ 66 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEP---KDLLPVGAE------------NEEDLYLRPTLEPGLVRL 66 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccH---hheeeeecC------------CCCEEEECCCCcHHHHHH
Confidence 45678888999999999999999999999988777653 334444432 245689999999999998
Q ss_pred HhcCcCCCCCcCceeeeeccccccCC--------c--------------------------------cCCc--cEEEEEe
Q psy10034 229 HRDSWLPEASLPIRYLGVSTCFRQED--------L--------------------------------TKSI--AYRVVNI 266 (399)
Q Consensus 229 ~~~~i~sy~~LPlk~~~~s~~fR~E~--------g--------------------------------~LgL--pyrvv~~ 266 (399)
++... +++|++++++++|||.|. . .||+ +++.+..
T Consensus 67 ~~~n~---~~~~~~lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~ 143 (211)
T cd00768 67 FVSHI---RKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEK 143 (211)
T ss_pred HHhhc---ccCCEEEEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEEEec
Confidence 88766 789999999999999873 1 6775 5666534
Q ss_pred ccCCCC-ccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccchHHH
Q psy10034 267 VSGALN-HAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRV 338 (399)
Q Consensus 267 ~sgdlg-~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~ 338 (399)
....+. +....++||.+|+|.. +..||++|+.+.+.+++.++++|.++ +++..++|+++++ ++++|+
T Consensus 144 ~~~~~~~~~~g~~~~i~~~~~~~-~~~eig~~g~~~~~~~~~~~l~~~~~---~~~~~~p~~~~~~-~~~~R~ 211 (211)
T cd00768 144 TPGEFSPGGAGPGFEIEVDHPEG-RGLEIGSGGYRQDEQARAADLYFLDE---ALEYRYPPTIGFG-LGLERL 211 (211)
T ss_pred CchhhccccCCceEEEEEEccCC-CeEEEeeceeecCchhHhhhhheecc---cccccCceeecCc-cCccCC
Confidence 444443 2567899999999874 56899999999888899999999865 3556678888666 889885
No 39
>PRK07080 hypothetical protein; Validated
Probab=99.50 E-value=4.4e-13 Score=130.43 Aligned_cols=232 Identities=15% Similarity=0.102 Sum_probs=161.5
Q ss_pred CHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccce
Q psy10034 114 SHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 193 (399)
Q Consensus 114 dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f 193 (399)
+-++=+...||+- .. ...|.|-..+.=-.|..+|..++...-...|++++..|.+++.+.|+++|++..|.+-++
T Consensus 20 ~~~~~l~~~g~~~-~~----g~~g~ygrs~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~ 94 (317)
T PRK07080 20 DFRDELFDAGLLI-PT----GVDGLYGRSGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAG 94 (317)
T ss_pred hHHHHHHhcCcee-cc----CCCccccccHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcccce
Confidence 3344445566653 22 335778777666666666666544433455699999999999999999999999999999
Q ss_pred EEeccCccCCC------------CCCCCCCCCCeeeeCCCChHHHHHHhcC-cCCCCCcCceeeeeccccccCCc-----
Q psy10034 194 KVIGKGEKVGD------------SAPEKDELDDKYLIATSEQPICAVHRDS-WLPEASLPIRYLGVSTCFRQEDL----- 255 (399)
Q Consensus 194 ~i~~~~~~~~~------------~~~~~~~~~~~~L~pTsE~~~~~l~~~~-i~sy~~LPlk~~~~s~~fR~E~g----- 255 (399)
.+..-+...+. +-.+.+...+++|.|.+|.|+..++.++ .+.... ..+--.|.|||+|.+
T Consensus 95 ~V~~~~g~~~e~~~ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g--~~~dv~g~CFR~E~s~dl~R 172 (317)
T PRK07080 95 TVHSFCGNEAEHRRLLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADG--RLVDVASYCFRHEPSLDPAR 172 (317)
T ss_pred eecCCCCCCHHHHHHHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCCCC--cEEEeeeeeeccCCCCCcHH
Confidence 88654311110 0113334568999999999999999876 455333 555666999999986
Q ss_pred ----------------------------------cCCccEEEEEeccCCCCccc--------cceeceeeecC--CCccc
Q psy10034 256 ----------------------------------TKSIAYRVVNIVSGALNHAA--------AKKLDLEAWFP--GSGAF 291 (399)
Q Consensus 256 ----------------------------------~LgLpyrvv~~~sgdlg~~a--------~~~ydiE~w~P--~~~~~ 291 (399)
.|||++++..++.-=.|... .-.+-.|.|+| +....
T Consensus 173 l~~F~mrE~V~iGt~e~v~~~r~~w~e~~~~l~~~LgL~~~ve~AnDPFF~~~gk~~a~~Qr~~~lKfEl~vpi~~~~~~ 252 (317)
T PRK07080 173 MQLFRMREYVRIGTPEQIVAFRQSWIERGTAMADALGLPVEIDLANDPFFGRGGKIVAASQREQNLKFELLIPIYSDAPP 252 (317)
T ss_pred HhheeeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCceeEeecCCccccccchhhhhhhhhccceeEEEEecCCCCCc
Confidence 89999999665432222110 11334566765 55566
Q ss_pred ceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccc
Q psy10034 292 RELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKF 361 (399)
Q Consensus 292 ~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py 361 (399)
--|.|++...|++..+++|+..+ + ..+||- |.|++++||..||+.+|+-+- -.||+..+.-
T Consensus 253 tA~~S~NyH~dhFg~~f~I~~~~-----g--~~ahTg-CvGFGlER~a~All~~hG~d~-~~WP~~Vr~~ 313 (317)
T PRK07080 253 TACMSFNYHMDHFGLTWGIRTAD-----G--AVAHTG-CVGFGLERLALALFRHHGLDP-AAWPAAVRDV 313 (317)
T ss_pred eEEEEEehhhhccccccCcccCC-----C--CEeEEe-eeecCHHHHHHHHHHHhCCCh-hhccHHHHHH
Confidence 77889988899999999997643 2 469994 999999999999999998421 2688766543
No 40
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.47 E-value=1.1e-12 Score=134.87 Aligned_cols=226 Identities=16% Similarity=0.143 Sum_probs=154.9
Q ss_pred HHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHH--HcCCeEecCCccccHHHHHHhcCcccccccce
Q psy10034 116 VDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWI--EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 193 (399)
Q Consensus 116 ~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~--~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f 193 (399)
..|+++-|++....-.=-.=+|+|-|-|.|+.|.+.|++..++.+. +-+..++-+|.|++..+|+.|||.+.|.|-|-
T Consensus 10 ~~l~krrgf~~~s~eiYgg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV 89 (539)
T PRK14894 10 VALAKRRGFIFPSSEIYGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLV 89 (539)
T ss_pred HHHHHhCCCCccCccccCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCcee
Confidence 4577888877643321111268999999999999999999998764 55678999999999999999999999976443
Q ss_pred EEecc----------------CccC---CCC-------CCCCCC--CCCeeeeCCCChHHHHHHhc-CcCCCCCcCceee
Q psy10034 194 KVIGK----------------GEKV---GDS-------APEKDE--LDDKYLIATSEQPICAVHRD-SWLPEASLPIRYL 244 (399)
Q Consensus 194 ~i~~~----------------~~~~---~~~-------~~~~~~--~~~~~L~pTsE~~~~~l~~~-~i~sy~~LPlk~~ 244 (399)
.-... +... +.. ...+.. ...-||+|-..+++.-=|++ .-.+-+.||+-++
T Consensus 90 ~CkkCk~ryRaD~LiikCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgia 169 (539)
T PRK14894 90 DCRDCKMRWRADHIQGVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIA 169 (539)
T ss_pred ECCCCCccccCccceeeCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEE
Confidence 21110 1000 000 001111 12478999766764433444 3445669999999
Q ss_pred eeccccccCCc-----------------------------------------cCCcc---EEEEEeccCCCCccccceec
Q psy10034 245 GVSTCFRQEDL-----------------------------------------TKSIA---YRVVNIVSGALNHAAAKKLD 280 (399)
Q Consensus 245 ~~s~~fR~E~g-----------------------------------------~LgLp---yrvv~~~sgdlg~~a~~~yd 280 (399)
|+|.+||+|+. ++|++ +|..+-...+|...|..++|
T Consensus 170 QIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D 249 (539)
T PRK14894 170 QVGKAFRNEINPRNFLFRVREFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFD 249 (539)
T ss_pred eeeccccCccCCCCceeecccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhhhhccEE
Confidence 99999999986 78884 66666777889999999999
Q ss_pred eeeecCCCcccceEEEecCcchhh----hh---ccc--------------cEEeccCCCCCceeEEEcccccccchHHHH
Q psy10034 281 LEAWFPGSGAFRELVSCSNCLDYQ----SR---RLL--------------VRYGQTKKMNEKIEFVHMLNATACATTRVI 339 (399)
Q Consensus 281 iE~w~P~~~~~~Ev~s~Snc~Dyq----a~---rl~--------------i~y~~~~~~~~~~~~vHtlngt~~ai~R~i 339 (399)
+|.-.|+- +|.|+.-|.+-+||- ++ .++ +.|.+. ..++....|-+ =..+++.|++
T Consensus 250 ~e~~~p~~-Gw~E~~Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~--~~~~~~iP~Vi-EpS~G~dR~~ 325 (539)
T PRK14894 250 LMYDYPNI-GVQEIEGIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQ--ASGRHVVPYVI-EPSAGVGRCM 325 (539)
T ss_pred EEEECCCC-CeEEEEEeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEec--cCCcccCCcee-ecCcchhHHH
Confidence 99998853 699999999888882 22 112 222221 12222334543 3345799999
Q ss_pred HHHHHh
Q psy10034 340 CAILET 345 (399)
Q Consensus 340 ~allE~ 345 (399)
.|+|++
T Consensus 326 ~a~l~~ 331 (539)
T PRK14894 326 LAVMCE 331 (539)
T ss_pred HHHHHH
Confidence 999988
No 41
>PLN02734 glycyl-tRNA synthetase
Probab=99.36 E-value=5e-12 Score=134.80 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=131.0
Q ss_pred HHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHH-HcCCeEecCCccccHHHHHHhcCcccccccce
Q psy10034 115 HVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 193 (399)
Q Consensus 115 H~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~-~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f 193 (399)
-.+|+++-|++....-.=-.=+|+|-|-|.|+.|.+.|+++.++.+. ..++.+|-+|.|++..+|..|||.++|.|=|-
T Consensus 78 l~~l~krRgF~~pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~mv 157 (684)
T PLN02734 78 VVNTLERRLFYIPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMV 157 (684)
T ss_pred HHHHHHhcCCccccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccceee
Confidence 35578888877644311101268999999999999999999999764 55778999999999999999999999987554
Q ss_pred EEeccCc------------------------------------------------------cCCCCCC------------
Q psy10034 194 KVIGKGE------------------------------------------------------KVGDSAP------------ 207 (399)
Q Consensus 194 ~i~~~~~------------------------------------------------------~~~~~~~------------ 207 (399)
.-...+. ..|.-++
T Consensus 158 ~~~~~~~~~RADhlie~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF 237 (684)
T PLN02734 158 KDEKTGTCFRADHLLKDFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMF 237 (684)
T ss_pred EcCCCCcEecchHHHHHHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccce
Confidence 3110000 0000001
Q ss_pred ----CCCCCCCeeeeCCCChHHHHHHhc-CcCCCCCcCceeeeeccccccCCc---------------------------
Q psy10034 208 ----EKDELDDKYLIATSEQPICAVHRD-SWLPEASLPIRYLGVSTCFRQEDL--------------------------- 255 (399)
Q Consensus 208 ----~~~~~~~~~L~pTsE~~~~~l~~~-~i~sy~~LPlk~~~~s~~fR~E~g--------------------------- 255 (399)
.+..+..-||+|=.-+++.-=|++ .-..-..||+-.+|+|..||+|++
T Consensus 238 ~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv~P~~k~h 317 (684)
T PLN02734 238 QTSIGPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKSH 317 (684)
T ss_pred eecccCcCCccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhheecCcccccc
Confidence 111123467887655543322333 223445899999999999999986
Q ss_pred --------------------------------------------------------cCCcc---EEEEEeccCCCCcccc
Q psy10034 256 --------------------------------------------------------TKSIA---YRVVNIVSGALNHAAA 276 (399)
Q Consensus 256 --------------------------------------------------------~LgLp---yrvv~~~sgdlg~~a~ 276 (399)
+|||+ .|...-...+|...|.
T Consensus 318 ~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~ 397 (684)
T PLN02734 318 PKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAA 397 (684)
T ss_pred cchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhh
Confidence 67773 5555556678888899
Q ss_pred ceeceeeecCCCcccceEEEecCcchh
Q psy10034 277 KKLDLEAWFPGSGAFRELVSCSNCLDY 303 (399)
Q Consensus 277 ~~ydiE~w~P~~~~~~Ev~s~Snc~Dy 303 (399)
.++|+|+..|. +|.|++-|.+-+||
T Consensus 398 dcwD~E~~~~~--GWiE~vG~AdRs~y 422 (684)
T PLN02734 398 DCWDAEIECSY--GWIECVGIADRSAY 422 (684)
T ss_pred ccEeEEEecCC--CcEEEEEecccccc
Confidence 99999999854 79999999877666
No 42
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=5.4e-11 Score=122.00 Aligned_cols=258 Identities=21% Similarity=0.228 Sum_probs=169.0
Q ss_pred HHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHH-H-cCCeEecCCccccHHHHHHhcCcccccccce
Q psy10034 116 VDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWI-E-KGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 193 (399)
Q Consensus 116 ~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~-~-~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f 193 (399)
.+|+++-|++-...-.=-.-+|||-|-|.|+.|.+.|++..++... . -|..+|-+|.|.+.++|..|||.++|.|-|-
T Consensus 10 ~~l~KrRGF~~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv 89 (558)
T COG0423 10 VELAKRRGFVFPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLV 89 (558)
T ss_pred HHHHHhcccccccceeecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCccccccccee
Confidence 4688888877543211112268999999999999999999998764 3 6899999999999999999999999997665
Q ss_pred EEeccCc------------------c-C-----------------CCC--------------CCCCCCCCCeeeeCCCCh
Q psy10034 194 KVIGKGE------------------K-V-----------------GDS--------------APEKDELDDKYLIATSEQ 223 (399)
Q Consensus 194 ~i~~~~~------------------~-~-----------------~~~--------------~~~~~~~~~~~L~pTsE~ 223 (399)
.-...+. . . ... ......+...||+|-.-+
T Consensus 90 ~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQ 169 (558)
T COG0423 90 ECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQ 169 (558)
T ss_pred eccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccc
Confidence 3211110 0 0 000 001222346789985545
Q ss_pred H-HHHHHhcCcCCCCCcCceeeeeccccccCCc-----------------------------------------------
Q psy10034 224 P-ICAVHRDSWLPEASLPIRYLGVSTCFRQEDL----------------------------------------------- 255 (399)
Q Consensus 224 ~-~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g----------------------------------------------- 255 (399)
+ |+++=+=.-..-+.||+-.+|+|..||+|++
T Consensus 170 GiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~ 249 (558)
T COG0423 170 GIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQE 249 (558)
T ss_pred hhhhhhHHHHHHhccCCCeEEEeechhhccccCcccceeehhhhhhhheeeEECCCcccCcchhhhhhhhcccccHHHhh
Confidence 4 3343222233456899999999999999987
Q ss_pred ------------------------------cCCcc---EEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcch
Q psy10034 256 ------------------------------TKSIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLD 302 (399)
Q Consensus 256 ------------------------------~LgLp---yrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~D 302 (399)
.||++ .|..+-...+|...|+.++|+|+.+|. ++|.|++-|.+-+|
T Consensus 250 ~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~-~gWiE~~GiAdRtd 328 (558)
T COG0423 250 EGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPF-GGWIELVGIADRTD 328 (558)
T ss_pred hhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEEEecCC-CceEEEEEeecccc
Confidence 34442 333333445566668889999999874 56999999999888
Q ss_pred hh----hh----cc-------------------ccEEeccCC--------------------------------------
Q psy10034 303 YQ----SR----RL-------------------LVRYGQTKK-------------------------------------- 317 (399)
Q Consensus 303 yq----a~----rl-------------------~i~y~~~~~-------------------------------------- 317 (399)
|- ++ -| +.+|-+..-
T Consensus 329 YDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~i~~~~~ 408 (558)
T COG0423 329 YDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVIIEEVEK 408 (558)
T ss_pred cchhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhhhccCccccccchhheeeeee
Confidence 83 21 00 111111000
Q ss_pred CCCceeEEEcccccccchHHHHHHHHHhcCC-C-----Cc-eecCcccccccCCcccCCcccccCccCCCCC
Q psy10034 318 MNEKIEFVHMLNATACATTRVICAILETHQT-E-----TG-VRIPDCLRKFVPAVYVNEAGEIPFVKTAPID 382 (399)
Q Consensus 318 ~~~~~~~vHtlngt~~ai~R~i~allE~~q~-~-----~g-i~iP~~L~py~~~~~~~~~~~~~~~~~~~~~ 382 (399)
..+.....|-+ =...++.|++.++|++--. + +. +.+|++|+|+... ++|.++..+-.
T Consensus 409 ~~~e~~iP~VI-EPSfGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikva-------VlPL~~k~~l~ 472 (558)
T COG0423 409 VTGEKYIPHVI-EPSFGIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVA-------VLPLVKKDELV 472 (558)
T ss_pred ccCceecCcee-ccCCCchHHHHHHHHHhhcccccccceeEEecCcccCceEEE-------EEeeecccchh
Confidence 00122344544 2345799999999999432 2 12 7899999999873 67888776543
No 43
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.20 E-value=4.6e-11 Score=115.21 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHH
Q psy10034 146 VCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPI 225 (399)
Q Consensus 146 a~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~ 225 (399)
+++.+.|++.+.+.+.++||++|.+|.|.+.++|..++ ++...++||++.|.+ ++.++|+|+.++++
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~~d~~------------g~~l~LRpd~T~~i 68 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDKG------------GRDLALRPDLTAPV 68 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc-cccccceEEEEECCC------------CCEEEeCCCCcHHH
Confidence 46788999999999999999999999999999998876 777888999998762 46799999999999
Q ss_pred HHHHhcCcCCCCCcCceeeeeccccccCCccCCccEEEEEeccCCCCccccceeceeee
Q psy10034 226 CAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKSIAYRVVNIVSGALNHAAAKKLDLEAW 284 (399)
Q Consensus 226 ~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g~LgLpyrvv~~~sgdlg~~a~~~ydiE~w 284 (399)
+-++.....+ .++|+|++.+++|||+|.+..+- +|....+.-++-+..+..-|+|+.
T Consensus 69 aR~~a~~~~~-~~~p~k~~y~g~vfR~e~~~~g~-~re~~Q~g~Eiig~~~~~~daE~i 125 (261)
T cd00773 69 ARAVAENLLS-LPLPLKLYYIGPVFRYERPQKGR-YREFYQVGVEIIGSDSPLADAEVI 125 (261)
T ss_pred HHHHHhcCcc-CCCCeEEEEEcCEEecCCCCCCC-ccceEEeceeeeCCCChHHHHHHH
Confidence 9999987666 78999999999999999875543 333332333333333344455544
No 44
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.08 E-value=4e-10 Score=115.42 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=91.5
Q ss_pred CceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh-cCcc-cccccceEEeccCccCCCCCCCCCCC
Q psy10034 135 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLA-QFDEELYKVIGKGEKVGDSAPEKDEL 212 (399)
Q Consensus 135 G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s-g~~~-~f~~~~f~i~~~~~~~~~~~~~~~~~ 212 (399)
..|+..|+|.++++.+.+++.+++.+.++||++|.+|.|-+.++|..+ |++. .+.++||++.+.. +
T Consensus 7 p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~------------g 74 (412)
T PRK00037 7 PRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKG------------G 74 (412)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCC------------C
Confidence 468899999999999999999999999999999999999999999774 6663 4578999998752 5
Q ss_pred CCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 213 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 213 ~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+.++|+|...++++-++..... +|+|+|+++++||+|..
T Consensus 75 ~~l~LRpd~T~~~ar~~~~~~~----~p~r~~~~g~vfR~e~~ 113 (412)
T PRK00037 75 RSLTLRPEGTAPVVRAVIEHKL----QPFKLYYIGPMFRYERP 113 (412)
T ss_pred CEEEecCCCcHHHHHHHHhCCC----CCeEEEEEcCccccCCC
Confidence 6899999999999988876422 99999999999999964
No 45
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.04 E-value=6.4e-10 Score=114.85 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=96.6
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh-c-CcccccccceEEeccCccCCCCCCCCCCCC
Q psy10034 136 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-A-QLAQFDEELYKVIGKGEKVGDSAPEKDELD 213 (399)
Q Consensus 136 ~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s-g-~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~ 213 (399)
.|+-=|+|..+...+.|++.+++...++||++|.||.|-..++|..+ | +++.+.++||.+.+.+ ++
T Consensus 8 ~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~------------g~ 75 (430)
T CHL00201 8 RGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRS------------NR 75 (430)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCC------------CC
Confidence 47788999999999999999999999999999999999999999875 5 7887889999998752 46
Q ss_pred CeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 214 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 214 ~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
.++|+|..++|++-++.....+++++|+|++.+++|||.|.
T Consensus 76 ~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~ 116 (430)
T CHL00201 76 DITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYER 116 (430)
T ss_pred EEEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCC
Confidence 79999999999999887766688899999999999999996
No 46
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.97 E-value=1.9e-09 Score=110.03 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=92.7
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhc--CcccccccceEEeccCccCCCCCCCCCCCC
Q psy10034 136 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA--QLAQFDEELYKVIGKGEKVGDSAPEKDELD 213 (399)
Q Consensus 136 ~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg--~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~ 213 (399)
.|+..|+|.++.+.+.|++.+++.+.++||++|.+|.+-..++|...+ +.+.+.++||.+.+.+ ++
T Consensus 4 ~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~------------g~ 71 (397)
T TIGR00442 4 RGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKG------------GR 71 (397)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCC------------CC
Confidence 478899999999999999999999999999999999999999998753 3444678999998752 56
Q ss_pred CeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 214 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 214 ~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.++|+|...++++-++.... ++.++|+|+|++++|||+|..
T Consensus 72 ~l~LRpD~T~~iaR~~~~~~-~~~~~p~r~~y~g~vfR~e~~ 112 (397)
T TIGR00442 72 SLTLRPEGTAPVARAVIENK-LLLPKPFKLYYIGPMFRYERP 112 (397)
T ss_pred EEeecCCCcHHHHHHHHhcc-cccCCCeEEEEEcCeecCCCC
Confidence 79999999999998877543 467899999999999999953
No 47
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=98.72 E-value=3.2e-08 Score=100.83 Aligned_cols=92 Identities=13% Similarity=0.315 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcc--cccccceEEeccCccCCCCCCCCCCCCCeeeeCC
Q psy10034 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA--QFDEELYKVIGKGEKVGDSAPEKDELDDKYLIAT 220 (399)
Q Consensus 143 ~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~--~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pT 220 (399)
+.+..|+++|.++ +...||+||.+|.|++.+.++..|++. .+.+++|.++ ++++|+|+
T Consensus 204 ~~~s~Le~aIR~~----f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~id----------------eel~LRps 263 (417)
T PRK09537 204 DYLGKLERDITKF----FVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD----------------KNFCLRPM 263 (417)
T ss_pred CHHHHHHHHHHHH----HHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeC----------------CceEehhh
Confidence 3455666555554 555899999999999999999988864 3556888763 36899999
Q ss_pred CChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 221 SEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 221 sE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+++++.+++.. ..+.++|+|++++|+|||.|..
T Consensus 264 LtPsLlr~la~n-~k~~~~P~RIFEIG~VFR~E~~ 297 (417)
T PRK09537 264 LAPGLYNYLRKL-DRILPDPIKIFEIGPCYRKESD 297 (417)
T ss_pred hHHHHHHHHHhh-hhcccCCeeEEEEeceEecCCC
Confidence 999988877632 3446789999999999999873
No 48
>PLN02530 histidine-tRNA ligase
Probab=98.65 E-value=7.7e-08 Score=100.98 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=90.3
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh-cCcccccccceEEeccCccCCCCCCCCCCCCC
Q psy10034 136 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLAQFDEELYKVIGKGEKVGDSAPEKDELDD 214 (399)
Q Consensus 136 ~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s-g~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~ 214 (399)
.|+.-|+|..+.+.+.|++.+++.+..+||++|.||.|-..+++... |. ...++||.+.|.+ ++.
T Consensus 74 ~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~f~D~~------------g~~ 139 (487)
T PLN02530 74 KGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE--EITDQLYNFEDKG------------GRR 139 (487)
T ss_pred CCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc--ccccceEEEECCC------------CCE
Confidence 47889999999999999999999999999999999999999999764 43 3567899998763 567
Q ss_pred eeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 215 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 215 ~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
++|+|-.-.|++-++.....+. .+|+|+|.+++|||.|..
T Consensus 140 l~LRpD~T~~iaR~~~~~~~~~-~~P~r~~y~g~vfR~e~~ 179 (487)
T PLN02530 140 VALRPELTPSLARLVLQKGKSL-SLPLKWFAIGQCWRYERM 179 (487)
T ss_pred EecCCCCcHHHHHHHHhccccc-CCCeEEEEEcCEEcCcCC
Confidence 9999999999998887654333 689999999999999963
No 49
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.64 E-value=7.2e-08 Score=95.61 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=87.6
Q ss_pred eccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCC
Q psy10034 141 LKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIAT 220 (399)
Q Consensus 141 l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pT 220 (399)
++|..+++.+.+++.+++...++||++|.||.+-+.+++...++ ...++||.+.+.+ ++.++|+|-
T Consensus 3 ~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~~~d~~------------g~~l~LRpD 68 (314)
T TIGR00443 3 LLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFKLFDSL------------GRVLGLRPD 68 (314)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEEEECCC------------CCEEeecCc
Confidence 57899999999999999999999999999999999999988776 4678999998762 467999998
Q ss_pred CChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 221 SEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 221 sE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
..+|++-++..... ...+|+|++.++++||.|..
T Consensus 69 ~T~~iaR~~~~~~~-~~~~p~r~~y~g~VfR~~~~ 102 (314)
T TIGR00443 69 MTTPIARAVSTRLR-DRPLPLRLCYAGNVFRTNES 102 (314)
T ss_pred CcHHHHHHHHHhcc-cCCCCeEEEEeceEeecCCC
Confidence 88999988876543 56789999999999999875
No 50
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=98.63 E-value=1.1e-07 Score=97.97 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=91.1
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh-cCcccccccceEEeccCccCCCCCCCCCCCCC
Q psy10034 136 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLAQFDEELYKVIGKGEKVGDSAPEKDELDD 214 (399)
Q Consensus 136 ~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s-g~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~ 214 (399)
.|+.-|+|..+.+.+.+.+-+++.+.++||.+|.||.|-..+++... |..+...++||++.|.+ ++.
T Consensus 8 ~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~------------g~~ 75 (423)
T PRK12420 8 KGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQG------------KRD 75 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCC------------Cce
Confidence 57789999999999999999999999999999999999999999753 55566667899998763 567
Q ss_pred eeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 215 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 215 ~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
++|+|-...|++-++.... ...+|+|+|.+++|||.|..
T Consensus 76 l~LRpD~T~~iaR~va~~~--~~~~p~r~~y~g~vfR~~~~ 114 (423)
T PRK12420 76 LALRYDLTIPFAKVVAMNP--NIRLPFKRYEIGKVFRDGPI 114 (423)
T ss_pred ecccccccHHHHHHHHhCc--CCCCCeeEEEEcceECCCCC
Confidence 9999999999998877642 34689999999999999864
No 51
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=98.26 E-value=3.6e-06 Score=86.10 Aligned_cols=90 Identities=13% Similarity=0.278 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccc--ccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQ--FDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPIC 226 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~--f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~ 226 (399)
...|.+.+++.+...||+||.+|.|.+.+.++..++..+ ..++||.+. +.++|+|+..++++
T Consensus 242 ~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e----------------e~lvLRPdLTPsLa 305 (453)
T TIGR02367 242 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD----------------KNFCLRPMLAPNLY 305 (453)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec----------------CceEecccCHHHHH
Confidence 556778888889999999999999999999888777643 456888763 25899999988888
Q ss_pred HHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 227 AVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 227 ~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.++.... ....+|+|+++++.|||.|..
T Consensus 306 R~La~N~-~~l~~PqKIFEIGkVFR~E~~ 333 (453)
T TIGR02367 306 NYLRKLD-RALPDPIKIFEIGPCYRKESD 333 (453)
T ss_pred HHHHHhh-hhccCCeeEEEEcCeEecCCC
Confidence 7765421 123689999999999999965
No 52
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=1.4e-05 Score=82.33 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=90.8
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHH-hcCccc-ccccceEEeccCccCCCCCCCCCCCC
Q psy10034 136 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQ-FDEELYKVIGKGEKVGDSAPEKDELD 213 (399)
Q Consensus 136 ~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~-f~~~~f~i~~~~~~~~~~~~~~~~~~ 213 (399)
.|+-=|+|.=+.+++.+++.+++.+.++||.+|.||.+=..+++.. +|.-.. -..+||.+.|.+ ++
T Consensus 8 rG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkg------------gr 75 (429)
T COG0124 8 RGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKG------------GR 75 (429)
T ss_pred CCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCC------------CC
Confidence 4778899999999999999999999999999999999999999875 443322 356899999874 57
Q ss_pred CeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 214 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 214 ~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
.+.|+|=.-.|++-++........ .|+|+|.+++|||.|.
T Consensus 76 ~laLRpe~Tapv~R~~~en~~~~~-~p~k~yy~g~vfRyEr 115 (429)
T COG0124 76 SLALRPELTAPVARAVAENKLDLP-KPLKLYYFGPVFRYER 115 (429)
T ss_pred EEEecccCcHHHHHHHHhcccccc-CCeeEEEecceecCCC
Confidence 899999888899988887665555 8999999999999995
No 53
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.97 E-value=1.7e-05 Score=81.04 Aligned_cols=105 Identities=14% Similarity=0.107 Sum_probs=86.8
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEecc-CccCCCCCCCCCCCCC
Q psy10034 136 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGK-GEKVGDSAPEKDELDD 214 (399)
Q Consensus 136 ~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~-~~~~~~~~~~~~~~~~ 214 (399)
.|+--++|.-+...+.+.+-+++...++||.+|.||.|-..+++..... +...++||++.|. + ++.
T Consensus 7 ~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g-~~~~~~~~~f~d~~~------------g~~ 73 (391)
T PRK12292 7 EGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGG-AILDLRTFKLVDQLS------------GRT 73 (391)
T ss_pred CcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCC-ccchhhhEEEeecCC------------CCE
Confidence 4777889999999999999999999999999999999999999865321 2234689999875 2 467
Q ss_pred eeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 215 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 215 ~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
++|+|=.-.|++-++.... .....|+|+|.+++|||.|.
T Consensus 74 l~LRpD~T~~iaR~~a~~~-~~~~~p~r~~y~g~vfR~~~ 112 (391)
T PRK12292 74 LGLRPDMTAQIARIAATRL-ANRPGPLRLCYAGNVFRAQE 112 (391)
T ss_pred EEECCCCcHHHHHHHHHhc-cCCCCCeEEEeeceeeecCC
Confidence 9999999999998877542 23467999999999999985
No 54
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.92 E-value=2.5e-05 Score=77.00 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=78.7
Q ss_pred eEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCee
Q psy10034 137 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKY 216 (399)
Q Consensus 137 g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 216 (399)
|+.-|+|.=++..+.+++-+.+...++||++|.||.+-..+++...+... .+++|.+.|.+ ++.++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~--~~~~~~~~D~~------------G~~l~ 66 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED--SDNMYRFLDRS------------GRVLA 66 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT--GGCSEEEECTT------------SSEEE
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc--hhhhEEEEecC------------CcEec
Confidence 56678899999999999999999999999999999999999988655333 34899998752 56799
Q ss_pred eeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 217 LIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 217 L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
|.|=.-.+++-++.... . ...|.|++.++++||.+..
T Consensus 67 LR~D~T~~iaR~~a~~~-~-~~~~~r~~y~g~vfR~~~~ 103 (311)
T PF13393_consen 67 LRPDLTVPIARYVARNL-N-LPRPKRYYYIGPVFRYERP 103 (311)
T ss_dssp E-SSSHHHHHHHHHHCC-G-SSSSEEEEEEEEEEEEETT
T ss_pred cCCCCcHHHHHHHHHhc-C-cCCCceEEEEcceeecccc
Confidence 99998889998887753 2 6789999999999999964
No 55
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.87 E-value=5.5e-05 Score=74.10 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=83.8
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCe
Q psy10034 136 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDK 215 (399)
Q Consensus 136 ~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~ 215 (399)
.|+--++|.=+.+.+.+++-+.+.+.++||++|.||.+-..++... .-.++||++.|.+ ++.+
T Consensus 9 ~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~-----~~~~~~y~~~D~~------------g~~l 71 (281)
T PRK12293 9 QGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI-----ADEKELIRFSDEK------------NHQI 71 (281)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc-----cchhceEEEECCC------------CCEE
Confidence 4777889999999999999999999999999999999977766521 2346899998752 5679
Q ss_pred eeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 216 YLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 216 ~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+|+|=.=.|++-++.... ....+|+|++.++++||.|.+
T Consensus 72 ~LRpD~T~~iaR~~a~~~-~~~~~p~r~~Y~g~vfR~~~r 110 (281)
T PRK12293 72 SLRADSTLDVVRIVTKRL-GRSTEHKKWFYIQPVFRYPSN 110 (281)
T ss_pred EECCcCCHHHHHHHHHhc-ccCCCceeEEEeccEEecCCC
Confidence 999988889998876543 223789999999999998765
No 56
>PLN02972 Histidyl-tRNA synthetase
Probab=97.62 E-value=0.00018 Score=78.64 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=84.6
Q ss_pred CceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHH-hcCcccccccceEEeccCccCCCCCCCCCCCC
Q psy10034 135 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKVIGKGEKVGDSAPEKDELD 213 (399)
Q Consensus 135 G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~ 213 (399)
-.|+.=|+|.=+.+.+.+++-+.+...++||.+|.||.|-..+++.+ .|.- ..+||.+.|.+ ++
T Consensus 330 PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged---~k~mY~f~D~g------------Gr 394 (763)
T PLN02972 330 PKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED---SKLIYDLADQG------------GE 394 (763)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc---hhheEEEECCC------------CC
Confidence 35788899999999999999999999999999999999999998865 2322 24799998863 56
Q ss_pred CeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 214 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 214 ~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.++|+|=--+|++-++.... ..|+|+|.++++||.|-.
T Consensus 395 ~LaLRPDlTvPiAR~vA~n~----~~p~KrYyiG~VFR~e~p 432 (763)
T PLN02972 395 LCSLRYDLTVPFARYVAMNG----ITSFKRYQIAKVYRRDNP 432 (763)
T ss_pred EEEeCCCChHHHHHHHHhCC----CCcceEEEeccEEecCCC
Confidence 78999998899998876542 238999999999999864
No 57
>KOG2298|consensus
Probab=97.62 E-value=8.8e-05 Score=75.76 Aligned_cols=58 Identities=10% Similarity=0.230 Sum_probs=52.9
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHHH-HHcCCeEecCCccccHHHHHHhcCcccccccce
Q psy10034 136 GRGYFLKGPAVCLQVGLVQYALSKW-IEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 193 (399)
Q Consensus 136 ~g~y~l~~~ga~l~~aL~~~~~d~~-~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f 193 (399)
+|+|-|-|.|.-|...++++.+... ..-+.-||-.|.|.|..++..|||.++|.|=|.
T Consensus 36 sGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D~mv 94 (599)
T KOG2298|consen 36 SGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFADWMV 94 (599)
T ss_pred ccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcccchhhhhHHHh
Confidence 6899999999999999999999865 477899999999999999999999999988665
No 58
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.61 E-value=0.00019 Score=73.45 Aligned_cols=104 Identities=11% Similarity=-0.002 Sum_probs=84.2
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHH-hcCcccccccceEEeccCccCCCCCCCCCCCCC
Q psy10034 136 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKVIGKGEKVGDSAPEKDELDD 214 (399)
Q Consensus 136 ~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~ 214 (399)
.|+--++|.=+...+.+.+-+++.+.++||++|.||.+=..+++.. .|... ...||++.|.+ .++.
T Consensus 11 ~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~--~~~~y~f~D~~-----------~g~~ 77 (392)
T PRK12421 11 DGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDL--KLQTFKLIDQL-----------SGRL 77 (392)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccc--hhceEEEEcCC-----------CCcE
Confidence 4777888999999999999999999999999999999999998865 34332 25799998752 1456
Q ss_pred eeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 215 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 215 ~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
++|+|=.=.|++-++.... ....|+|+|.++++||.+.
T Consensus 78 l~LRpD~T~~iaR~~a~~~--~~~~p~R~~Y~g~VfR~~~ 115 (392)
T PRK12421 78 MGVRADITPQVARIDAHLL--NREGVARLCYAGSVLHTLP 115 (392)
T ss_pred EEECCcCCHHHHHHHHhhc--CCCCceEEEEeeeEEEcCC
Confidence 8999988889998766542 2266999999999999875
No 59
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=97.43 E-value=0.0013 Score=63.20 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccc-----cccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF-----DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f-----~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
...+.+-+++.+...||+++..|.+....--...=..|.. ..+.|.+..... ...+..+-.|+-.
T Consensus 19 ~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~----------~~~~~~vLRThts 88 (247)
T PF01409_consen 19 ITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYS----------AEEDYSVLRTHTS 88 (247)
T ss_dssp HHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSB----------CECSSEEE-SSTH
T ss_pred HHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeecccc----------ccchhhhhhhhhh
Confidence 3445556677788999999999999654433322222222 245676754310 0023344455555
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc----------------------------------cC-CccEEEEEecc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL----------------------------------TK-SIAYRVVNIVS 268 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g----------------------------------~L-gLpyrvv~~~s 268 (399)
|...-+. .+.+..|+|++.++.|||+|.- .| |....+-.-++
T Consensus 89 ~~~~~~l---~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~~~~~r~~ps 165 (247)
T PF01409_consen 89 PGQLRTL---NKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGIDVKVRFRPS 165 (247)
T ss_dssp HHHHHHH---TTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTTTEEEEEEEC
T ss_pred HHHHHHH---HHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhcccceEeecC
Confidence 5443222 4566789999999999999973 45 66522222222
Q ss_pred CCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccchHHHHHHHH
Q psy10034 269 GALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAIL 343 (399)
Q Consensus 269 gdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~all 343 (399)
---...-+.+.|+-...+..++|.||.-|.-.---.-+..++- +.. +.-+-|++++|+.....
T Consensus 166 ~fPftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gid-------~~~-----~~~A~G~GleRlam~~~ 228 (247)
T PF01409_consen 166 YFPFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGID-------EEY-----PGFAFGLGLERLAMLKY 228 (247)
T ss_dssp EETTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT---------TTS-----EEEEEEEEHHHHHHHHH
T ss_pred CCCcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCcC-------ccc-----eEEEecCCHHHHHHHHc
Confidence 1111112334454443466778999988853211112333441 011 12266888999876543
No 60
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.24 E-value=0.0012 Score=67.21 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHcCCeEecCCccccHHHHHH-hcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHH
Q psy10034 151 GLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVH 229 (399)
Q Consensus 151 aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~ 229 (399)
.+.+-+++...++||.+|.||.+-..+++.. +|.. -.++||++.|.+ ++.++|+|=.=.|++-++
T Consensus 9 ~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~--~~~~~~~f~D~~------------G~~l~LRpD~T~piaR~~ 74 (373)
T PRK12295 9 AAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGED--IRRRIFVTSDEN------------GEELCLRPDFTIPVCRRH 74 (373)
T ss_pred HHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCch--hhcceEEEECCC------------CCEEeeCCCCcHHHHHHH
Confidence 5666677888999999999999999998753 3432 235799998763 567999999888999776
Q ss_pred hcCcCCCCCcCceeeeeccccccCCc
Q psy10034 230 RDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 230 ~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
... ....|+|+|.+++|||.|.+
T Consensus 75 ~~~---~~~~p~R~~Y~g~VfR~~~g 97 (373)
T PRK12295 75 IAT---AGGEPARYAYLGEVFRQRRD 97 (373)
T ss_pred HHc---CCCCCeEEEEEccEEECCCC
Confidence 543 13579999999999999954
No 61
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.013 Score=58.59 Aligned_cols=163 Identities=13% Similarity=0.198 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhc-Ccccc-----cccceEEeccCccCCCCCCCCCCCCCeee
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA-QLAQF-----DEELYKVIGKGEKVGDSAPEKDELDDKYL 217 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg-~~~~f-----~~~~f~i~~~~~~~~~~~~~~~~~~~~~L 217 (399)
-+......+++-+.+.+...||+++..| .|-.+.|-=.. ..|++ -.+.|.+++. .+..|
T Consensus 108 G~~Hpl~~~~e~i~~iF~~mGF~~~~gp-~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~--------------~~~~l 172 (335)
T COG0016 108 GSLHPLTQTIEEIEDIFLGMGFTEVEGP-EIETDFYNFDALNIPQDHPARDMQDTFYLKDD--------------REKLL 172 (335)
T ss_pred CCcChHHHHHHHHHHHHHHcCceeccCC-cccccccchhhhcCCCCCCcccccceEEEcCC--------------CCcee
Confidence 3344455566668888899999999999 55555543222 12221 2356666542 11334
Q ss_pred eCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc----------------------------------cC-----C
Q psy10034 218 IATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL----------------------------------TK-----S 258 (399)
Q Consensus 218 ~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g----------------------------------~L-----g 258 (399)
--||.-++..-+..+.... |+|+++.++|||++.- .+ .
T Consensus 173 LRTHTs~vq~R~l~~~~~~---P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~~~~ 249 (335)
T COG0016 173 LRTHTSPVQARTLAENAKI---PIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGEDVK 249 (335)
T ss_pred ecccCcHhhHHHHHhCCCC---CceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCCCcc
Confidence 4566666654333222111 9999999999999953 11 1
Q ss_pred ccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccchHHH
Q psy10034 259 IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRV 338 (399)
Q Consensus 259 Lpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~ 338 (399)
+.||--. ..+. -..+.+++|.+..++|.||.-|. =+.++-+..---+. . ..+..+-|++++|+
T Consensus 250 vRfrpsy-----FPFT-EPS~Evdv~~~~~~~WlEi~G~G---mv~P~VL~~~G~~~-----~---~~~GfAfGlGlERl 312 (335)
T COG0016 250 VRFRPSY-----FPFT-EPSAEVDVYCPGCGGWLEILGCG---MVHPNVLEAVGIDP-----E---EYSGFAFGLGLERL 312 (335)
T ss_pred eEeecCC-----CCCC-CCeEEEEEEEcCCCCEEEEeccc---ccCHHHHHhcCCCC-----C---cceEEEEeecHHHH
Confidence 2222211 1121 24567888999888899997664 45555443211011 1 11223668889998
Q ss_pred HHH
Q psy10034 339 ICA 341 (399)
Q Consensus 339 i~a 341 (399)
-..
T Consensus 313 AML 315 (335)
T COG0016 313 AML 315 (335)
T ss_pred HHH
Confidence 654
No 62
>PRK09350 poxB regulator PoxA; Provisional
Probab=96.63 E-value=0.0039 Score=61.81 Aligned_cols=90 Identities=13% Similarity=0.219 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChH
Q psy10034 145 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQP 224 (399)
Q Consensus 145 ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~ 224 (399)
-.++...+.+.+++.+.++||.||.||.|...... ..++..|..+ |...+.. .+..++|.-+.|..
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~--~~~~~~f~~~-y~~~~~~-----------~~~~~~L~~SPe~~ 69 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVT--DIHLVPFETR-FVGPGAS-----------QGKTLWLMTSPEYH 69 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCC--CccCCceeee-ecccccc-----------CCcceEEecCHHHH
Confidence 35778889999999999999999999999764431 1233334433 3322211 14567888555555
Q ss_pred HHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 225 ICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 225 ~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+.-++... + -|+|++++|||+|-.
T Consensus 70 ~kr~la~~------~-~rvf~i~~~FR~e~~ 93 (306)
T PRK09350 70 MKRLLAAG------S-GPIFQICKSFRNEEA 93 (306)
T ss_pred HHHHhhcc------c-cceEEecceeecCCC
Confidence 44343322 2 299999999999975
No 63
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.0051 Score=64.64 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=41.0
Q ss_pred CCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCc
Q psy10034 319 NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAV 365 (399)
Q Consensus 319 ~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~ 365 (399)
+++.++.++. |.|.+++|+++++||++++++||.||..++||....
T Consensus 366 ~g~~~~~~mg-~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~i 411 (500)
T COG0442 366 DGKEQPKTMG-CYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHI 411 (500)
T ss_pred CCCccceEEE-ehhhhhhhHHHHHHHHhcccccCccccccCcceeEE
Confidence 5666778874 889999999999999999999999999999998865
No 64
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=96.18 E-value=0.01 Score=59.36 Aligned_cols=88 Identities=17% Similarity=0.272 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChH
Q psy10034 145 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQP 224 (399)
Q Consensus 145 ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~ 224 (399)
-.++..++.+.+++.+.++||.||.||.|+.... .| +.+.|.+..... ..-+..++|..+.|..
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~---~~-----~~~~F~v~~~~~--------~~~~~~~~L~~Spql~ 84 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC---EG-----GAEPFSVDSEPG--------KYFGEPAYLTQSPQLY 84 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS---SS-----SSCSEEEEESTT--------EETTEEEEE-SSSHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc---Cc-----cccccccccchh--------hhcccceecCcChHHH
Confidence 5688999999999999999999999999988753 12 346777762100 0013468899888765
Q ss_pred HHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 225 ICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 225 ~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+=.+.... + =++|++++|||+|-.
T Consensus 85 ~k~ll~~g------~-~~vf~i~~~FR~E~~ 108 (335)
T PF00152_consen 85 LKRLLAAG------L-ERVFEIGPCFRNEES 108 (335)
T ss_dssp HHHHHHTT------H-SEEEEEEEEE-BSSS
T ss_pred Hhhhcccc------c-hhhhheecceeccCc
Confidence 54444332 1 369999999999975
No 65
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=96.18 E-value=0.016 Score=56.46 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHH
Q psy10034 147 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPIC 226 (399)
Q Consensus 147 ~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~ 226 (399)
++..++.+.+++.+.++||.+|.||.|..... |. +.+.|.+.... .+.+++|.-+.+..+-
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~----~~----~~~~f~~~~~~-----------~g~~~~L~~Spql~~~ 62 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITG----GA----GARPFLVKYNA-----------LGLDYYLRISPQLFKK 62 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccCC----cc----ccceEEeeecC-----------CCCcEEeecCHHHHHH
Confidence 46778899999999999999999999986622 11 11457664210 1457888866555433
Q ss_pred HHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 227 AVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 227 ~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
.+.... +. |+|++++|||+|-
T Consensus 63 ~~~~~~-~~------~vf~i~~~fR~e~ 83 (269)
T cd00669 63 RLMVGG-LD------RVFEINRNFRNED 83 (269)
T ss_pred HHHhcC-CC------cEEEEecceeCCC
Confidence 333221 11 8999999999994
No 66
>KOG0555|consensus
Probab=96.10 E-value=0.012 Score=59.25 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHH
Q psy10034 147 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 181 (399)
Q Consensus 147 ~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~ 181 (399)
++.-++.+.++|.....||+||.+|.||...+=-+
T Consensus 244 K~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGG 278 (545)
T KOG0555|consen 244 KARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGG 278 (545)
T ss_pred HHHHHHHHHHHHHHHhcCceecCCCceEEEEecCc
Confidence 45566778889999999999999999999987433
No 67
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=95.89 E-value=0.015 Score=59.31 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=91.9
Q ss_pred EEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh-cCcccccccceEEeccCccCCCCCCCCCCCCCeee
Q psy10034 139 YFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYL 217 (399)
Q Consensus 139 y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s-g~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L 217 (399)
=..+|.=+.....+.+-+.+.+.++||+.|.+|+|-+.+.+... |+.. ...+|++.|.. +..+||
T Consensus 10 rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l--~~~~f~l~d~~------------g~~l~L 75 (390)
T COG3705 10 RDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDL--RRRLFKLEDET------------GGRLGL 75 (390)
T ss_pred hhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhh--hhhheEEecCC------------CCeEEe
Confidence 34566667777778888888889999999999999999987654 4332 25799998863 456999
Q ss_pred eCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCccCCccEEEEEeccCCCCccccceeceeee
Q psy10034 218 IATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKSIAYRVVNIVSGALNHAAAKKLDLEAW 284 (399)
Q Consensus 218 ~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g~LgLpyrvv~~~sgdlg~~a~~~ydiE~w 284 (399)
+|---.|++-++.....+ .|.||+=.+.+||...+..|=......+....+|. .+-.-|+|+-
T Consensus 76 RpD~T~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~-~~~~ADaEvi 138 (390)
T COG3705 76 RPDFTIPVARIHATLLAG---TPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGD-DSAAADAEVI 138 (390)
T ss_pred cccccHHHHHHHHHhcCC---CCceeeecchhhhcchhccCcccchhhhhhHHhCC-CcchhhHHHH
Confidence 998888999888765544 89999999999998844333322223333344555 3445566654
No 68
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=95.79 E-value=0.02 Score=57.37 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChH
Q psy10034 145 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQP 224 (399)
Q Consensus 145 ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~ 224 (399)
-.++..++.+.+++.+.++||.||.||.|+.... .+... .|.+.... .+...||.-+.|..
T Consensus 7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---~~~~~-----~f~~~~~~-----------~~~~~yL~~Spql~ 67 (329)
T cd00775 7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAG---GAAAR-----PFITHHNA-----------LDMDLYLRIAPELY 67 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCCC---Cccce-----eEEeccCC-----------CCcceeeccCHHHH
Confidence 4577888999999999999999999999986631 12222 34332110 13467887665544
Q ss_pred HHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 225 ICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 225 ~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+=.+.... + =++|++++|||+|-.
T Consensus 68 ~k~ll~~g------~-~~vf~i~~~FR~E~~ 91 (329)
T cd00775 68 LKRLIVGG------F-ERVYEIGRNFRNEGI 91 (329)
T ss_pred HHHHHhcC------C-CcEEEEeccccCCCC
Confidence 32332211 1 479999999999975
No 69
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=95.75 E-value=0.14 Score=53.93 Aligned_cols=178 Identities=12% Similarity=0.089 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh------cCcccccccceEEeccCccC----C-------------C-
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV------AQLAQFDEELYKVIGKGEKV----G-------------D- 204 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s------g~~~~f~~~~f~i~~~~~~~----~-------------~- 204 (399)
...+++-+++.+...||+++..|..+-++.|-=. -|...-..+.|.+++..... + +
T Consensus 231 l~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~He~G~ 310 (494)
T PTZ00326 231 LLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVHEVGG 310 (494)
T ss_pred HHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHhccCC
Confidence 4445566788888999999988866666665321 12223334677776421000 0 0
Q ss_pred --CCC-----CCCCCCCeeeeCCCChHHHHHHhcCcCC--C-CC-cCceeeeeccccccCCc------------------
Q psy10034 205 --SAP-----EKDELDDKYLIATSEQPICAVHRDSWLP--E-AS-LPIRYLGVSTCFRQEDL------------------ 255 (399)
Q Consensus 205 --~~~-----~~~~~~~~~L~pTsE~~~~~l~~~~i~s--y-~~-LPlk~~~~s~~fR~E~g------------------ 255 (399)
... .......++|++=.-.+.+-++...... + .. -|+|++.+++|||+|.-
T Consensus 311 ~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~~ 390 (494)
T PTZ00326 311 YGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGFVIDR 390 (494)
T ss_pred cCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEEEEeC
Confidence 000 0000124556543333344444332111 1 22 39999999999999963
Q ss_pred ----------------cCCc-cEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCC
Q psy10034 256 ----------------TKSI-AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKM 318 (399)
Q Consensus 256 ----------------~LgL-pyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~ 318 (399)
+||+ ..|.. | .-..+. -..+.+++|.|..++|.||..|..+.--.-+.+++ +
T Consensus 391 ~~s~~~L~~~l~~f~~~lG~~~~Rfr--P-~yfPfT-EPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi---~---- 459 (494)
T PTZ00326 391 NLTLGDLIGTIREFFRRIGITKLRFK--P-AFNPYT-EPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGF---P---- 459 (494)
T ss_pred CCCHHHHHHHHHHHHHhcCCCceEEe--c-CCCCCC-CCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCC---C----
Confidence 4554 22221 1 111111 23456778889888899998876542111233344 1
Q ss_pred CCceeEEEcccccccchHHHHHHH
Q psy10034 319 NEKIEFVHMLNATACATTRVICAI 342 (399)
Q Consensus 319 ~~~~~~vHtlngt~~ai~R~i~al 342 (399)
.+ .+.-+-|++++|+....
T Consensus 460 -~~----~~~~A~GlGleRlaMi~ 478 (494)
T PTZ00326 460 -ED----VTVIAWGLSLERPTMIK 478 (494)
T ss_pred -Cc----ceEEEEEecHHHHHHHH
Confidence 11 12336788999986653
No 70
>PRK06462 asparagine synthetase A; Reviewed
Probab=95.71 E-value=0.019 Score=57.72 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccc---ccccceEEeccCccCCCCCCCCCCCCCeeeeCC
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQ---FDEELYKVIGKGEKVGDSAPEKDELDDKYLIAT 220 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~---f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pT 220 (399)
.-.++..++.+.+++.+.++||.||.||.|+.... -++.. .+-..|.++.- +.++||..+
T Consensus 28 ~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~----~~~~~g~~~~~~~~~~~~~-------------~~~~yL~~S 90 (335)
T PRK06462 28 KVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTD----PLMGLGSDLPVKQISIDFY-------------GVEYYLADS 90 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCC----CCCCccccCCccccccccC-------------CCceeeccC
Confidence 35688999999999999999999999999987611 11111 01122333211 346888776
Q ss_pred CChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 221 SEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 221 sE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+-. -.+... . + =|+|++++|||+|-.
T Consensus 91 pql~-k~ll~~----g--~-~rVfeI~p~FR~E~~ 117 (335)
T PRK06462 91 MILH-KQLALR----M--L-GKIFYLSPNFRLEPV 117 (335)
T ss_pred HHHH-HHHHHh----h--c-CcEEEEeccccCCCC
Confidence 5443 222221 1 2 469999999999964
No 71
>PLN02850 aspartate-tRNA ligase
Probab=95.60 E-value=0.028 Score=59.91 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++.+.+++++.++||.||.||.|+.... ++ . -+.|.+.-- +..+||.-+.+.
T Consensus 223 aifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~-eg--g-----a~~F~v~yf-------------~~~~~L~qSpql 281 (530)
T PLN02850 223 AIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS-EG--G-----SAVFRLDYK-------------GQPACLAQSPQL 281 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC-cc--c-----cceeeeccC-------------CcceecCCCHHH
Confidence 45678889999999999999999999999966433 21 1 235666432 356888765433
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
..=.+... .+ =|+|++++|||+|-+
T Consensus 282 ~kq~li~~------g~-~rVfeIgp~FRaE~s 306 (530)
T PLN02850 282 HKQMAICG------DF-RRVFEIGPVFRAEDS 306 (530)
T ss_pred HHHHHHHh------cC-CceEEEecccccCCC
Confidence 22211211 11 279999999999974
No 72
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=95.60 E-value=0.031 Score=58.02 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++.+.+++.+.++||.||.||.|+.... + |.. ++|.++-- +.++||.-+.|.
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~-e--g~~-----~~f~v~~~-------------~~~~yL~~Spql 189 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT-E--GGT-----ELFPITYF-------------EREAFLGQSPQL 189 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC-C--CCc-----ceeeeEec-------------CCcEEECcCHHH
Confidence 46788999999999999999999999999984322 2 222 24544321 346788655443
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+--+... .+ =|+|++++|||+|-.
T Consensus 190 ~~q~li~~------g~-~rVf~i~~~FR~E~~ 214 (428)
T TIGR00458 190 YKQQLMAA------GF-ERVYEIGPIFRAEEH 214 (428)
T ss_pred HHHHHHhc------cc-CcEEEEecccccCCC
Confidence 32222222 11 369999999999976
No 73
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.56 E-value=0.054 Score=52.88 Aligned_cols=95 Identities=8% Similarity=-0.114 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAV 228 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l 228 (399)
.+.+++-+++...++||++|.||.+=..+++..++.... ....+.+.+. .++.+.|+|=.=.|++-+
T Consensus 10 ~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~-~~~~~~~~~~------------~Gr~laLRpD~T~~iAR~ 76 (272)
T PRK12294 10 LKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQ-QMGERSFWQH------------EHQIYALRNDFTDQLLRY 76 (272)
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchh-hhheeeeecC------------CCCEEEEcCCCCHHHHHH
Confidence 456777788888999999999999988888644332111 2223445442 256899999988899988
Q ss_pred HhcCcCCCCCcCceeeeeccccccCCc--cCCcc
Q psy10034 229 HRDSWLPEASLPIRYLGVSTCFRQEDL--TKSIA 260 (399)
Q Consensus 229 ~~~~i~sy~~LPlk~~~~s~~fR~E~g--~LgLp 260 (399)
++... .-|.|++-++++||.+.. ++|+.
T Consensus 77 ~a~~~----~~~~Rl~Y~g~VfR~~~~~~Q~GvE 106 (272)
T PRK12294 77 YSMYP----TAATKVAYAGLIIRNNEAAVQVGIE 106 (272)
T ss_pred HHhcC----CCCceEEEeccEeccCCCcceeceE
Confidence 76432 236799999999999864 45543
No 74
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=95.50 E-value=0.049 Score=56.67 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++.+.+++.+.++||.||.||.|+.... + |.. +.|.++-- +..+||.-+.|.
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~-e--g~~-----~~f~~~~~-------------~~~~~L~~Spql 192 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT-E--GGA-----ELFPIDYF-------------EKEAYLAQSPQL 192 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC-C--CCc-----ceEeEEec-------------CCceEecCCHHH
Confidence 46688899999999999999999999999964211 1 222 24555422 346788766544
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.+... .+ =|+|++++|||+|-.
T Consensus 193 ~~q~l~~~------g~-~rVf~i~~~FR~E~~ 217 (437)
T PRK05159 193 YKQMMVGA------GF-ERVFEIGPVFRAEEH 217 (437)
T ss_pred HHHHHHhc------CC-CcEEEEeceeeCCCC
Confidence 32222222 11 369999999999976
No 75
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=0.036 Score=58.40 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++...+...+++.|...||.+|.||.|.++.- ++ -.| |-|..+- ...++|--|-|-.
T Consensus 139 ~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP-EG------ARD--fLVPSRv-----------~~G~FYALPQSPQ 198 (585)
T COG0173 139 KNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP-EG------ARD--FLVPSRV-----------HPGKFYALPQSPQ 198 (585)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEeecCccccCCC-cc------ccc--ccccccc-----------CCCceeecCCCHH
Confidence 34577888999999999999999999999887642 21 111 3344331 1235777787755
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
-+-++.+-.-+ =|||||.+|||+|--
T Consensus 199 lfKQLLMvsGf------dRYyQIarCFRDEDl 224 (585)
T COG0173 199 LFKQLLMVAGF------DRYYQIARCFRDEDL 224 (585)
T ss_pred HHHHHHHHhcc------cceeeeeeeeccccc
Confidence 55554432222 279999999999964
No 76
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=95.47 E-value=0.25 Score=49.67 Aligned_cols=85 Identities=9% Similarity=0.106 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccc-----cccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF-----DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f-----~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
...+.+-+++.+...||+++..|.|.....-...-..|.. ..+.|.|++ ..+|+...-.
T Consensus 110 l~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~----------------~~lLRThTSp 173 (339)
T PRK00488 110 ITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDD----------------GLLLRTHTSP 173 (339)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcC----------------CceeeccCcH
Confidence 3445566778888899999999999865543322222221 235676742 2345443333
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
...-.+.+ ...|+|++++|.|||++.
T Consensus 174 ~qir~L~~-----~~~Pirif~~G~VyR~D~ 199 (339)
T PRK00488 174 VQIRTMEK-----QKPPIRIIAPGRVYRNDS 199 (339)
T ss_pred HHHHHHHh-----cCCCeEEEEeeeEEEcCC
Confidence 33343433 678999999999999986
No 77
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=95.40 E-value=0.042 Score=57.40 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCC
Q psy10034 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSE 222 (399)
Q Consensus 143 ~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE 222 (399)
..-.++...+.+.+++.+.++||.||-||.|+.... .|. -+.|.+..... ...+. .-+.++||.-+.+
T Consensus 130 ~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~---eg~-----~~~F~v~~~~~---~~~~~-~~~~~~~L~~Spq 197 (450)
T PRK03932 130 GAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDC---EGA-----GELFRVTTLDL---DFSKD-FFGKEAYLTVSGQ 197 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCC---CCC-----CCceEeecccc---ccccc-ccCCCcccccCHH
Confidence 456788999999999999999999999999997621 122 23566632100 00000 0134678877765
Q ss_pred hHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 223 QPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 223 ~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
..+ .++.. .+ =|+|++++|||+|-.
T Consensus 198 l~l-q~l~~------g~-~rVf~i~~~FR~E~~ 222 (450)
T PRK03932 198 LYA-EAYAM------AL-GKVYTFGPTFRAENS 222 (450)
T ss_pred HHH-HHHHh------cc-CCeEEeeeccccCCC
Confidence 443 33321 22 369999999999975
No 78
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=95.36 E-value=0.027 Score=56.21 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++...+.+.+++.+.++||.+|.||.|..... .|... .|.++-- +.++||.-+.|-
T Consensus 22 ~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~---e~~~~-----~f~~~~~-------------~~~~yL~~Spql 80 (322)
T cd00776 22 AIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT---EGGAE-----LFKVSYF-------------GKPAYLAQSPQL 80 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC---CccCC-----ccccccC-------------CCcceecCCHHH
Confidence 45688889999999999999999999999987332 12332 3433321 346788766554
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.+... + =++|++++|||+|-+
T Consensus 81 ~lk~l~~~-------~-~~vf~i~~~FR~E~~ 104 (322)
T cd00776 81 YKEMLIAA-------L-ERVYEIGPVFRAEKS 104 (322)
T ss_pred HHHHHHHh-------h-hhhEEeccccccCCC
Confidence 33333322 1 368999999999974
No 79
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=95.29 E-value=0.026 Score=55.92 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHH
Q psy10034 147 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPIC 226 (399)
Q Consensus 147 ~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~ 226 (399)
++...+.+.+++.+.++||.+|.||.|.....-+ ++.. .|.+.--+. ...+...||.-+.|..+=
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e--~~~~-----~F~~~y~~~--------~~~~~~~yL~~Spql~lk 66 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVTD--PHLD-----AFATEFLGP--------DGEGRPLYLQTSPEYAMK 66 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCC--cCCc-----ceeeeccCC--------CCCCcceeeecCHHHHHH
Confidence 5677889999999999999999999998774211 2333 343321100 001346788877665443
Q ss_pred HHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 227 AVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 227 ~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+...- + =|+|++++|||+|-.
T Consensus 67 ~ll~~g------~-~rVfeigp~FRaE~~ 88 (304)
T TIGR00462 67 RLLAAG------S-GPIFQICKVFRNGER 88 (304)
T ss_pred HHHhcc------C-CCEEEEcCceeCCCC
Confidence 232211 2 469999999999976
No 80
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=95.02 E-value=0.047 Score=58.38 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++.+.+++.+.++||.||.||.|+.... + |... .|.+.-- +..+||.-+.+.
T Consensus 211 ~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~-e--gga~-----~F~v~yf-------------~~~~~L~qSpql 269 (550)
T PTZ00401 211 AIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS-E--GGAN-----VFKLEYF-------------NRFAYLAQSPQL 269 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC-C--cccc-----ccccccC-------------CCCeecCCCHHH
Confidence 45678889999999999999999999999987552 2 2222 3544321 346788655433
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
|++..+.. .+ =|+|++++|||+|-+
T Consensus 270 -----~kq~li~~-g~-~rVfeI~p~FRaE~s 294 (550)
T PTZ00401 270 -----YKQMVLQG-DV-PRVFEVGPVFRSENS 294 (550)
T ss_pred -----HHHHHHhc-CC-CCEEEEeCeEeCCCC
Confidence 22221111 12 369999999999976
No 81
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=95.00 E-value=0.13 Score=48.35 Aligned_cols=86 Identities=9% Similarity=0.155 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHH-HHHHhcCcccccc----cceEEeccCccCCCCCCCCCCCCCeeeeCCCChH
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKE-VMQEVAQLAQFDE----ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQP 224 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~-l~~~sg~~~~f~~----~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~ 224 (399)
+.+.+-+++.|...||+|+.++.++..+ .+...+..+.-.. +.+.+.+. - .-+|+++-=+.
T Consensus 4 ~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP-------------~-~~~LR~sLlp~ 69 (218)
T cd00496 4 NKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDP-------------A-RLLLRTHTSAV 69 (218)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCC-------------c-eEEEeccCcHH
Confidence 3455667888999999999999999883 4443332111000 23445432 1 34788887777
Q ss_pred HHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 225 ICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 225 ~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
+....... ..|++++++|+|||.+.
T Consensus 70 LL~~l~~N-----~~~~~lFEiG~Vf~~~~ 94 (218)
T cd00496 70 QARALAKL-----KPPIRIFSIGRVYRNDE 94 (218)
T ss_pred HHHHHHhc-----CCCeeEEEEcCeEECCC
Confidence 66544333 67999999999998875
No 82
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=94.72 E-value=0.11 Score=56.87 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++...+.+.+++.+.++||.||.||.|++... ++. .+-++...-. ...+|--++|-+
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~-eGA------r~~~~p~~~~-------------~~~~y~L~qSPQ 213 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP-EGA------RDYLVPSRIH-------------PKEFYALPQSPQ 213 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC-CCC------cceEEeeecC-------------CCcceecCCCHH
Confidence 46688999999999999999999999999997442 111 1111111110 123444455543
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
-+-.+..-. .. =|+|++++|||+|-.
T Consensus 214 lykq~lm~~--G~----~rvfqI~~~FR~E~~ 239 (706)
T PRK12820 214 LFKQLLMIA--GF----ERYFQLARCFRDEDL 239 (706)
T ss_pred HHHHHHHhc--cC----CcEEEEechhcCCCC
Confidence 333322110 11 369999999999976
No 83
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=94.56 E-value=0.063 Score=56.93 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++++.++||.||.||.|... .+.+.... |...... -+.++||.=..|.
T Consensus 182 ~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~---~gGa~a~p-----F~t~~~~-----------~~~~~yL~~SpEL 242 (505)
T PRK12445 182 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVI---PGGASARP-----FITHHNA-----------LDLDMYLRIAPEL 242 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec---CCCCcccc-----eeccccc-----------CCcceeeecCHHH
Confidence 456788999999999999999999999999653 11112222 2111100 1346788766554
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.+...- . =|+|++++|||+|-.
T Consensus 243 ylKrlivgG---~----~rVfeIg~~FRnE~~ 267 (505)
T PRK12445 243 YLKRLVVGG---F----ERVFEINRNFRNEGI 267 (505)
T ss_pred HHHHHHhcc---C----CcEEEEehhccCCCC
Confidence 433322211 1 369999999999975
No 84
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=94.53 E-value=0.063 Score=56.78 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++...+++.+++.+.++||.||.||.|.... +.+... .|.+.... -+.++||.-+.|.
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~---gga~a~-----pF~t~~~~-----------~~~~~yLriSpEL 230 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP---GGANAR-----PFITHHNA-----------LDMDLYLRIAPEL 230 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC---CCccce-----eEEeeccc-----------CCCceEEecCHHH
Confidence 4667888999999999999999999999997542 111122 24332110 1346888877655
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.+...- . =|+|++++|||+|-.
T Consensus 231 ylKrlivgG---~----~rVfeIg~~FRnE~~ 255 (496)
T TIGR00499 231 YLKRLIVGG---F----EKVYEIGRNFRNEGV 255 (496)
T ss_pred HHHHHHhCC---C----CceEEEecceecCCC
Confidence 443332211 1 369999999999975
No 85
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=94.52 E-value=0.094 Score=56.59 Aligned_cols=85 Identities=20% Similarity=0.323 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++.+.+++.+.++||.||.||.|++... ++. .+ |.+..+- ...++|--++|-+
T Consensus 139 ~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~-ega------~~--f~v~~~~-----------~~~~~~~L~qSpq 198 (588)
T PRK00476 139 KNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP-EGA------RD--YLVPSRV-----------HPGKFYALPQSPQ 198 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC-CCC------cc--ceecccc-----------cCCceeecCCCHH
Confidence 45688899999999999999999999999997532 221 11 4443210 0123443456644
Q ss_pred HHHHH-HhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAV-HRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l-~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
-+-.+ +... + =|+|++++|||+|-.
T Consensus 199 l~kq~l~~~g------~-~rvfqi~~~FR~E~~ 224 (588)
T PRK00476 199 LFKQLLMVAG------F-DRYYQIARCFRDEDL 224 (588)
T ss_pred HHHHHHHhcc------c-CceEEEeceeecCCC
Confidence 33332 2111 1 379999999999984
No 86
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=94.50 E-value=0.11 Score=56.07 Aligned_cols=85 Identities=20% Similarity=0.339 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++...+.+.+++.+.+.||.||.||.|++... ++.+ + |.+..+- ...++|--++|-+
T Consensus 136 ~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~-eGar------~--f~vp~~~-----------~~~~~y~L~qSpQ 195 (583)
T TIGR00459 136 QRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP-EGAR------D--YLVPSRV-----------HKGEFYALPQSPQ 195 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC-CCCc------c--eeeeeec-----------CCCceeecCCCHH
Confidence 45688999999999999999999999999997432 2211 1 3222210 0224553455544
Q ss_pred HHHHH-HhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAV-HRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l-~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
-+-.+ +..- + =|+|++++|||+|-.
T Consensus 196 lykq~l~v~G------~-ervfqI~~~FR~E~~ 221 (583)
T TIGR00459 196 LFKQLLMVSG------V-DRYYQIARCFRDEDL 221 (583)
T ss_pred HHHHHHHhcc------c-CcEEEEcceeeCCCC
Confidence 33332 2111 1 379999999999975
No 87
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=94.44 E-value=0.06 Score=57.92 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++++.++||.||.||.|.... +.+...- |...... .+.++||.=+.|.
T Consensus 251 ~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~---GGA~a~P-----F~T~~n~-----------~d~~lYLriSpEL 311 (585)
T PTZ00417 251 STFITRTKIINYLRNFLNDRGFIEVETPTMNLVA---GGANARP-----FITHHND-----------LDLDLYLRIATEL 311 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC---Cccccee-----EEecccC-----------CCcceEEeecHHH
Confidence 4557888999999999999999999999998762 2112222 2111100 1347899877666
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.+...- + =|+|++++|||+|-.
T Consensus 312 ~lKrLlvgG------~-~rVfeIgp~FRnE~~ 336 (585)
T PTZ00417 312 PLKMLIVGG------I-DKVYEIGKVFRNEGI 336 (585)
T ss_pred HHHHHHHhC------C-CCEEEEcccccCCCC
Confidence 554443221 1 369999999999974
No 88
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=94.41 E-value=0.068 Score=56.50 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++.+.++||.||.||.|.... +|- .-..|.+.... -+.++||.=+.|.
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~-----------~~~~~yL~~Spql 230 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA----GGA----AARPFITHHNA-----------LDIDLYLRIAPEL 230 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC----CCc----cceeeeecccc-----------CCCceEeccCHHH
Confidence 5667888999999999999999999999997442 221 01234322110 1346788755544
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.+...- + =|+|++++|||+|-.
T Consensus 231 ~lk~l~v~g------~-~rVfei~~~FR~E~~ 255 (491)
T PRK00484 231 YLKRLIVGG------F-ERVYEIGRNFRNEGI 255 (491)
T ss_pred HHHHHHhcc------C-CcEEEEecceecCCC
Confidence 333332211 1 479999999999975
No 89
>PLN02502 lysyl-tRNA synthetase
Probab=94.39 E-value=0.087 Score=56.39 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++...+++.+++++..+||.||.||.|.... +.+.... |...... -+.++||.=+.|.
T Consensus 227 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~---gGA~a~p-----F~t~~n~-----------~~~~~yL~~Spel 287 (553)
T PLN02502 227 DIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA---GGAAARP-----FVTHHND-----------LNMDLYLRIATEL 287 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC---CCccccc-----eeeeccc-----------CCcceeeecCHHH
Confidence 4557888999999999999999999999997642 1112222 3221110 1346888877665
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.+.... . =|+|++++|||+|-.
T Consensus 288 ~lK~L~v~g---~----~rVfeIg~~FRnE~~ 312 (553)
T PLN02502 288 HLKRLVVGG---F----ERVYEIGRQFRNEGI 312 (553)
T ss_pred HHHHHHHhc---c----CCEEEEcCeeeCCCC
Confidence 543333221 1 369999999999976
No 90
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=94.27 E-value=0.071 Score=56.28 Aligned_cols=111 Identities=12% Similarity=0.130 Sum_probs=68.0
Q ss_pred EeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccH-----HHHHHhcCcccccccceEEeccCc-c------------
Q psy10034 140 FLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK-----EVMQEVAQLAQFDEELYKVIGKGE-K------------ 201 (399)
Q Consensus 140 ~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~-----~l~~~sg~~~~f~~~~f~i~~~~~-~------------ 201 (399)
-+.|.-....+.+++-+++.+...||++|.+|.+-.. .++..--|...-..+.|.+..... .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~ 305 (489)
T PRK04172 226 KIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEV 305 (489)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHH
Confidence 3445556778888889999999999999999988644 343322233322234444432110 0
Q ss_pred --CCC--------CCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 202 --VGD--------SAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 202 --~~~--------~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
.+. ..-.+.....++|+|-.=.+++-++.. ....|+++|++++|||+|.
T Consensus 306 he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~----~~~~p~rlFeiGrVFR~e~ 364 (489)
T PRK04172 306 HEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLAS----RPEPPQKYFSIGRVFRPDT 364 (489)
T ss_pred HhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHh----cCCCCeEEEEecceEcCCC
Confidence 000 000001124578888766677766554 2357999999999999985
No 91
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=94.25 E-value=0.076 Score=55.57 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++...+++.+++.+.++||.+|.||.|+.... ++. .++|.+...+.. .....-+.++||.-+.+.
T Consensus 134 ~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~-eg~-------~~~F~v~~~~~~----~~~~~~~~~~yL~~Spql 201 (453)
T TIGR00457 134 AVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDC-EGA-------GELFRVSTDGID----FSQDFFGKEAYLTVSGQL 201 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC-CCC-------CCceEecccccc----cchhccCCccccccCHHH
Confidence 45689999999999999999999999999987542 111 234555411000 000001345677665433
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
|.....+ .+ =|+|++++|||+|-.
T Consensus 202 -----~lq~l~~--g~-~rVf~i~~~FR~E~~ 225 (453)
T TIGR00457 202 -----YLETYAL--AL-SKVYTFGPTFRAEKS 225 (453)
T ss_pred -----HHHHHhh--cc-cCceEeeeccccCCC
Confidence 2221111 23 369999999999976
No 92
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=94.11 E-value=0.14 Score=55.59 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++++..+||.||.||.|+... +-+... .|.+.... .+.++||.=+.|.
T Consensus 231 ~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~---~ga~a~-----pF~t~~n~-----------~~~~~yL~~SPEL 291 (659)
T PTZ00385 231 ETIKKRHVMLQALRDYFNERNFVEVETPVLHTVA---SGANAK-----SFVTHHNA-----------NAMDLFLRVAPEL 291 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC---CCCCcc-----ceEeeccc-----------CCCCEEecCChHH
Confidence 4567888999999999999999999999996532 111222 34332110 0346788766554
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.+...- + =|+|++++|||+|-.
T Consensus 292 ylKrLivgG------~-erVyeIg~~FRnE~~ 316 (659)
T PTZ00385 292 HLKQCIVGG------M-ERIYEIGKVFRNEDA 316 (659)
T ss_pred HHHHHhhcc------c-CCEEEEeceecCCCC
Confidence 433333211 1 469999999999975
No 93
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=94.05 E-value=0.22 Score=49.18 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCeEecCCccccH-HHHHHhcCccc----ccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHH
Q psy10034 151 GLVQYALSKWIEKGYTPLYTPFFMRK-EVMQEVAQLAQ----FDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPI 225 (399)
Q Consensus 151 aL~~~~~d~~~~~Gy~ev~~P~l~~~-~l~~~sg~~~~----f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~ 225 (399)
.+.+-+++.+...||+|+.+|.+... ..+..-+..+. -..+.|.+.+ ..+|+++-=+.+
T Consensus 76 ~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d----------------~~vLRtsl~p~l 139 (294)
T TIGR00468 76 RVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKD----------------RLLLRTHTTAVQ 139 (294)
T ss_pred HHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecC----------------CcceecccHHHH
Confidence 34455688889999999999999887 33443322110 0003455542 346777765555
Q ss_pred HHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 226 CAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 226 ~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
....+.... .|++++++|+|||.+.
T Consensus 140 l~~l~~N~~----~pirlFEiGrVfr~d~ 164 (294)
T TIGR00468 140 LRTMEENEK----PPIRIFSPGRVFRNDT 164 (294)
T ss_pred HHHHHhcCC----CCceEEEecceEEcCC
Confidence 555443221 7999999999999874
No 94
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=93.73 E-value=0.5 Score=49.71 Aligned_cols=195 Identities=12% Similarity=0.200 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHcCCeEec-CCccccHHHHHH------hcCcccccccceEEeccCccC--C-------------C--C
Q psy10034 150 VGLVQYALSKWIEKGYTPLY-TPFFMRKEVMQE------VAQLAQFDEELYKVIGKGEKV--G-------------D--S 205 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~-~P~l~~~~l~~~------sg~~~~f~~~~f~i~~~~~~~--~-------------~--~ 205 (399)
..+++-+++.+...||+++. .|.+ -.+.|-= --|...-..+.|.+++..... + + .
T Consensus 224 ~~~~~ei~~if~~mGF~e~~~g~~v-es~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~~g 302 (492)
T PLN02853 224 LKVRQQFRKIFLQMGFEEMPTNNFV-ESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESGGYG 302 (492)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCe-echhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcCCCC
Confidence 34555678888889999995 5544 4444421 112223335678786421000 0 0 0
Q ss_pred CC------CCCCCCCeeeeCCCChHHH--HHHhcCcCCCCCcCceeeeeccccccCCc----------------------
Q psy10034 206 AP------EKDELDDKYLIATSEQPIC--AVHRDSWLPEASLPIRYLGVSTCFRQEDL---------------------- 255 (399)
Q Consensus 206 ~~------~~~~~~~~~L~pTsE~~~~--~l~~~~i~sy~~LPlk~~~~s~~fR~E~g---------------------- 255 (399)
+. .......++| -||-.++. .|+... .-..-|++++.+++|||+|.=
T Consensus 303 S~Gw~y~W~~~~a~~~vL-RTHTTa~s~r~L~~~~--~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t~ 379 (492)
T PLN02853 303 SIGYGYDWKREEANKNLL-RTHTTAVSSRMLYKLA--QKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTL 379 (492)
T ss_pred ccccccccccchhccccc-CCCCCHHHHHHHHHhh--ccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCCCH
Confidence 00 0000023344 44444433 344311 112369999999999999972
Q ss_pred ------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhh---ccccEEeccCCCCC
Q psy10034 256 ------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSR---RLLVRYGQTKKMNE 320 (399)
Q Consensus 256 ------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~---rl~i~y~~~~~~~~ 320 (399)
+||. -. +..-..-..+. -..+.+++|.|..++|.||.-|. =|.++ .+++ + .
T Consensus 380 ~~L~g~l~~f~~~lg~-~~-~RfrP~yfPfT-EPS~Ei~v~~~~~gkWiEi~g~G---m~rpevl~~~Gi---~-----~ 445 (492)
T PLN02853 380 GDLIGVLEDFFSRLGM-TK-LRFKPAYNPYT-EPSMEIFSYHEGLKKWVEVGNSG---MFRPEMLLPMGL---P-----E 445 (492)
T ss_pred HHHHHHHHHHHHHcCC-ce-EEEecCCCCCC-CCeEEEEEEecCCCCEEEEecCc---CcCHHHHHhCCC---C-----C
Confidence 4443 11 11111112221 23456667888877899997764 34443 3333 1 1
Q ss_pred ceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCCcccccCccCCCC
Q psy10034 321 KIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPI 381 (399)
Q Consensus 321 ~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~~~~~~~~ 381 (399)
-.+.-+-|++++|+...... ||. +|-+.++.. .|.|+.++|+
T Consensus 446 ----~~~~~A~GlGleRlaMl~yg---------i~D-IR~l~~~k~-----Dl~~lr~~p~ 487 (492)
T PLN02853 446 ----DVNVIAWGLSLERPTMILYG---------IDN-IRDLFGHKV-----DLGLIKRNPI 487 (492)
T ss_pred ----cceEEEEEecHHHHHHHHhC---------CcH-HHHHhCCCC-----CHHHHhhCcc
Confidence 11233678899998765432 222 455555432 5667777665
No 95
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=93.71 E-value=0.2 Score=53.88 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHH
Q psy10034 142 KGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 178 (399)
Q Consensus 142 ~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l 178 (399)
+-.-.|+..+|...+++++.++||.+|.||.|+..+.
T Consensus 211 ~~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~ 247 (586)
T PTZ00425 211 ISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDC 247 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCC
Confidence 3456789999999999999999999999999988764
No 96
>PLN02903 aminoacyl-tRNA ligase
Probab=93.54 E-value=0.19 Score=54.67 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-cCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCC
Q psy10034 144 PAVCLQVGLVQYALSKWIE-KGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSE 222 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~-~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE 222 (399)
.-.++...+.+.+++.+.. +||.||.||.|+.... ++.+ +.+...... ...+|.-|+|-
T Consensus 201 ~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~-eGar-------df~v~~~~~------------~g~~y~L~qSP 260 (652)
T PLN02903 201 ANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP-EGAR-------DYLVPSRVQ------------PGTFYALPQSP 260 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC-CCCc-------ccEEeeecC------------CCcccccCCCH
Confidence 4668889999999999986 9999999999986643 2221 122221100 12333344554
Q ss_pred hHHHHH-HhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 223 QPICAV-HRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 223 ~~~~~l-~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+-+-.+ +... + =|+|++++|||+|-.
T Consensus 261 QlykQ~Lm~~G------~-~RvFqIa~~FR~E~~ 287 (652)
T PLN02903 261 QLFKQMLMVSG------F-DRYYQIARCFRDEDL 287 (652)
T ss_pred HHHHHHHHhcc------C-CcEEEEehhhccCCC
Confidence 433332 2111 1 369999999999976
No 97
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=93.07 E-value=0.12 Score=50.66 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHH
Q psy10034 147 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPIC 226 (399)
Q Consensus 147 ~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~ 226 (399)
++..++++.+++.+.++||.||.||.|+.... .+.+ . |.+..... .+..++|. +|.+
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~-~g~~---~-----f~~~~~~~----------~~~~~~L~-~Spq--- 58 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP-EGAR---D-----FLVPSRLH----------PGKFYALP-QSPQ--- 58 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC-CCCC---C-----ceeccccC----------CCceeecc-cCHH---
Confidence 46678889999999999999999999986544 2221 1 32221100 02234455 3322
Q ss_pred HHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 227 AVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 227 ~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+|.+..+.. .+ =|+|++++|||+|-.
T Consensus 59 -l~lk~ll~~-g~-~~v~~i~~~fR~e~~ 84 (280)
T cd00777 59 -LFKQLLMVS-GF-DRYFQIARCFRDEDL 84 (280)
T ss_pred -HHHHHHHhc-Cc-CcEEEeccceeCCCC
Confidence 333322211 11 369999999999975
No 98
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=93.04 E-value=0.1 Score=50.93 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHH
Q psy10034 147 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPIC 226 (399)
Q Consensus 147 ~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~ 226 (399)
....++++-++++...+||.||.||.|...-.-+ .|+..|..+.+...+.+ ...+||.++-|.++-
T Consensus 17 l~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd--~hL~~F~Te~~~~~~~~------------~~~l~L~TSPEy~mK 82 (322)
T COG2269 17 LKRAAIIAAIRRFFAERGVLEVETPALSVAPVTD--IHLHPFETEFLGPGGAK------------GKPLWLHTSPEYHMK 82 (322)
T ss_pred HHHHHHHHHHHHHHHHcCceEecchHhhcCCCCc--cceeeeeeEEeccCccc------------cceeeeecCcHHHHH
Confidence 4456677778888899999999999887665432 37777776654332211 246899998888776
Q ss_pred HHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 227 AVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 227 ~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
-+..... -.+||++.|||++-
T Consensus 83 rLLAag~-------~~ifql~kvfRN~E 103 (322)
T COG2269 83 RLLAAGS-------GPIFQLGKVFRNEE 103 (322)
T ss_pred HHHHccC-------CcchhhhHHHhccc
Confidence 6665443 33899999999974
No 99
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=93.00 E-value=0.16 Score=52.53 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++...+...+++++.+.||++|.||.|+.... + -+.+||.++-- +.+.||.=+. +
T Consensus 132 Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~-E-------Gg~elF~v~yf-------------~~~a~LtqS~-Q 189 (435)
T COG0017 132 AVFKIRSSILRAIREFFYENGFTEVHTPIITASAT-E-------GGGELFKVDYF-------------DKEAYLTQSP-Q 189 (435)
T ss_pred HHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC-C-------CCceeEEEeec-------------CcceEEecCH-H
Confidence 46799999999999999999999999999988765 1 12368888643 3467776553 1
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
-...++... + =|+|.++++||.|.+
T Consensus 190 Lyke~~~~a-l------~rVf~igP~FRAE~s 214 (435)
T COG0017 190 LYKEALAAA-L------ERVFTIGPTFRAEKS 214 (435)
T ss_pred HHHHHHHHH-h------CceEEecCceecCCC
Confidence 111121111 1 368999999999987
No 100
>KOG1936|consensus
Probab=92.91 E-value=0.33 Score=49.85 Aligned_cols=93 Identities=14% Similarity=0.235 Sum_probs=73.9
Q ss_pred EeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccccc---ccceEEeccCccCCCCCCCCCCCCCee
Q psy10034 140 FLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFD---EELYKVIGKGEKVGDSAPEKDELDDKY 216 (399)
Q Consensus 140 ~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~---~~~f~i~~~~~~~~~~~~~~~~~~~~~ 216 (399)
-|-|.-..|.+.+.+-+.+...++|++.+-+|++=-++++.+ +|+ ..+|-+.|++ ++-..
T Consensus 68 D~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~g-----KYGEdskLiYdlkDQG------------GEl~S 130 (518)
T KOG1936|consen 68 DFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTG-----KYGEDSKLIYDLKDQG------------GELCS 130 (518)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhh-----hcccccceeEehhhcC------------CcEEE
Confidence 455777789999999999999999999999999999988754 344 4588888874 33456
Q ss_pred eeCCCChHHHHH-HhcCcCCCCCcCceeeeeccccccCC
Q psy10034 217 LIATSEQPICAV-HRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 217 L~pTsE~~~~~l-~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
|++---+||+-+ .+|.+.| ++-|+|+..||+.-
T Consensus 131 LRYDLTVPfARylAmNki~s-----ikRy~iAkVyRRd~ 164 (518)
T KOG1936|consen 131 LRYDLTVPFARYLAMNKITS-----IKRYHIAKVYRRDQ 164 (518)
T ss_pred eecccccHHHHHHHHccccc-----ceeeeEEEEEeccC
Confidence 999888999965 5555555 77899999999884
No 101
>PLN02532 asparagine-tRNA synthetase
Probab=92.55 E-value=0.21 Score=54.06 Aligned_cols=36 Identities=8% Similarity=0.239 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHH
Q psy10034 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 178 (399)
Q Consensus 143 ~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l 178 (399)
..-.++..++...+++++..+||.+|.||.|+....
T Consensus 232 ~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~ 267 (633)
T PLN02532 232 ASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDA 267 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCC
Confidence 346789999999999999999999999999988764
No 102
>KOG2411|consensus
Probab=92.14 E-value=0.19 Score=52.28 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHH-HcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 145 AVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 145 ga~l~~aL~~~~~d~~~-~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
-.|+..+++.-+++.+. ..||.+|-||.|.+..- |. -.=|.+..+. ....+|--|-|-.
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkrTP----gG-----A~EFvVPtr~-----------~~g~FYaLpQSPQ 236 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRTP----GG-----AREFVVPTRT-----------PRGKFYALPQSPQ 236 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcchhccCC----Cc-----cceeecccCC-----------CCCceeecCCCHH
Confidence 45778888888888775 78999999999887642 11 1224454331 1235777777766
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+-+|.+-.-+ =||||+.+|||+|..
T Consensus 237 QfKQlLMvsGi------drYyQiARCfRDEdl 262 (628)
T KOG2411|consen 237 QFKQLLMVSGI------DRYYQIARCFRDEDL 262 (628)
T ss_pred HHHHHHHHhch------hhHHhHHhhhccccc
Confidence 66666544333 279999999999975
No 103
>PLN02221 asparaginyl-tRNA synthetase
Probab=92.10 E-value=0.41 Score=51.49 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHH
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 178 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l 178 (399)
.-.++..++.+.+++++.++||.+|.||.|+....
T Consensus 169 Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~~ 203 (572)
T PLN02221 169 AVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC 203 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccccC
Confidence 46789999999999999999999999999988765
No 104
>PLN02603 asparaginyl-tRNA synthetase
Probab=92.08 E-value=0.17 Score=54.25 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHH
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 178 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l 178 (399)
.-.|+..++...+++.+.++||.+|.||.|+..+.
T Consensus 224 ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~ 258 (565)
T PLN02603 224 AVARVRNALAYATHKFFQENGFVWVSSPIITASDC 258 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecccCC
Confidence 45688999999999999999999999999986643
No 105
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=91.28 E-value=0.21 Score=57.60 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++.+.++||.||.||.|....- .+... .|.+.... -+.++||.=..|.
T Consensus 768 ~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~g---Ga~a~-----pF~t~~~~-----------~~~~~yLriSPEL 828 (1094)
T PRK02983 768 DLLRARSAVVRAVRETLVARGFLEVETPILQQVHG---GANAR-----PFVTHINA-----------YDMDLYLRIAPEL 828 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCC---Ccccc-----eeEeeecC-----------CCccchhhcChHH
Confidence 45678889999999999999999999999974321 11222 24322110 1346788766654
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.+... . + =|+|++++|||+|-.
T Consensus 829 ylKrLivg---G---~-erVFEIg~~FRnE~~ 853 (1094)
T PRK02983 829 YLKRLCVG---G---V-ERVFELGRNFRNEGV 853 (1094)
T ss_pred HHHHHHhc---c---c-CceEEEcceecCCCC
Confidence 43333321 1 1 369999999999976
No 106
>KOG0556|consensus
Probab=90.76 E-value=0.27 Score=50.09 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHH
Q psy10034 147 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPIC 226 (399)
Q Consensus 147 ~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~ 226 (399)
+|.-.+..++++.|..+||.+|.||-|+-.+. .-+.++|.++=- ...-||+-+ -
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~asS--------EGGanvF~v~Yf-------------k~~A~LAQS-----P 282 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGASS--------EGGANVFRVSYF-------------KQKAYLAQS-----P 282 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceecccccccccC--------CCCceeEEEEec-------------cCcchhhcC-----h
Confidence 67777888899999999999999999987654 234578887632 123444432 2
Q ss_pred HHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 227 AVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 227 ~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
++|++..+-- | =-|.|.+|++||.|-+
T Consensus 283 QLyKQMaI~g-d-f~rVyeIGpVfRAEdS 309 (533)
T KOG0556|consen 283 QLYKQMAICG-D-FERVYEIGPVFRAEDS 309 (533)
T ss_pred HHHHHHHHhc-c-hhheeeecceeecccc
Confidence 4455443321 1 1479999999999987
No 107
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=88.71 E-value=0.47 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.668 Sum_probs=20.4
Q ss_pred cCCCCCcCceeeeeccccccCCc
Q psy10034 233 WLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 233 i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
++.-.++|++++.|-+|||+|.+
T Consensus 200 i~~r~~~PlklFSIDRCFRREQ~ 222 (536)
T COG2024 200 ILKREDPPLKLFSIDRCFRREQR 222 (536)
T ss_pred HHhccCCCceeeehhHHhhhhhh
Confidence 45667999999999999999987
No 108
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=86.37 E-value=2.9 Score=44.90 Aligned_cols=90 Identities=9% Similarity=0.092 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHH-HHHhcCcccccc-cceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEV-MQEVAQLAQFDE-ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPIC 226 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l-~~~sg~~~~f~~-~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~ 226 (399)
.+.+.+-+++.|...||+|+.+..|+..+. +..-+.. .+ ....+.+.- +.+.-+|+++-=+.+.
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~---~~~~~i~l~NPl-----------s~e~svLRtsLlpgLL 426 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLE---PEEDYVEVLNPI-----------SEDYTVVRTSLLPSLL 426 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCC---CCCCeEEEcCCC-----------ccchheEeccchHHHH
Confidence 455666778889999999999999999965 5543321 12 256665431 2333478887666666
Q ss_pred HHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 227 AVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 227 ~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
...+... .+..|++++++|.||+.+.
T Consensus 427 ~~~~~N~--~~~~~~~lFEiG~Vf~~~~ 452 (552)
T PRK09616 427 EFLSNNK--HREYPQKIFEIGDVVLIDE 452 (552)
T ss_pred HHHHhcc--CCCCCeeEEEeeEEEecCC
Confidence 5555433 3467999999999997653
No 109
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=85.00 E-value=1.4 Score=40.64 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHh
Q psy10034 151 GLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHR 230 (399)
Q Consensus 151 aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~ 230 (399)
.+.+-+++.|...||.|+.+..|+..+.....+ ++ ..+..+|.+. .+.+.-+|++|-=+.+....+
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~-~~--~~~~i~l~NP-----------is~e~~~lR~sLlp~LL~~~~ 69 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFD-GG--LDEAVELSNP-----------LSEEYSVLRTSLLPGLLDALA 69 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhcc-CC--CCCeEEEcCC-----------CchhHHHHHHHHHHHHHHHHH
Confidence 345567888899999999999999996665431 11 1234555543 112233677775455554443
Q ss_pred cCcCCCCCcCceeeeeccccccC
Q psy10034 231 DSWLPEASLPIRYLGVSTCFRQE 253 (399)
Q Consensus 231 ~~i~sy~~LPlk~~~~s~~fR~E 253 (399)
.- .+....|++++++|.+|...
T Consensus 70 ~N-~~~~~~~~~lFEiG~vf~~~ 91 (198)
T cd00769 70 RN-LNRKNKPLRLFEIGRVFLKD 91 (198)
T ss_pred HH-hcCCCCCEeEEEeEeEEecC
Confidence 32 35556899999999999654
No 110
>KOG0554|consensus
Probab=84.04 E-value=2.9 Score=42.74 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=62.1
Q ss_pred EeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeC
Q psy10034 140 FLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIA 219 (399)
Q Consensus 140 ~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~p 219 (399)
...+.-+|+..+|.--..+++..++|+.|.+|.|...+. ++. -+||.+...- +...+.-++..+|.-
T Consensus 126 ~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC-EGa-------GE~F~vtt~~-----d~~~~fFg~p~fLTV 192 (446)
T KOG0554|consen 126 AKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC-EGA-------GEVFQVTTLT-----DYSKDFFGRPAFLTV 192 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC-CCC-------cceEEEEecC-----cccccccCCceEEEE
Confidence 455778899999998888899999999999999988875 222 2688876431 011111234556654
Q ss_pred CCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 220 TSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 220 TsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
..--.+-.|...- -+.|-+|++||.|-+
T Consensus 193 SgQLhlE~~a~~L--------srvyTfgP~FRAEnS 220 (446)
T KOG0554|consen 193 SGQLHLEAMACAL--------SRVYTFGPTFRAENS 220 (446)
T ss_pred eceehHHHHHhhh--------cceEeeccceecccC
Confidence 4322222222211 257889999999987
No 111
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=83.34 E-value=0.61 Score=40.28 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=20.5
Q ss_pred HHhcCCCCceecCcccccccCCc
Q psy10034 343 LETHQTETGVRIPDCLRKFVPAV 365 (399)
Q Consensus 343 lE~~q~~~gi~iP~~L~py~~~~ 365 (399)
+|++.++.|++||..++||+...
T Consensus 10 iE~~~d~~Gl~~P~~iAP~qV~I 32 (128)
T cd02426 10 RKKGRQRQVLKLHPCLAPYKVAI 32 (128)
T ss_pred hhcCCCCcEEECCCCCCCeEEEE
Confidence 48889999999999999999844
No 112
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=82.95 E-value=2.4 Score=44.47 Aligned_cols=59 Identities=19% Similarity=0.457 Sum_probs=39.4
Q ss_pred CCCcCceeeeeccccccCCc-----------------------------------cCCcc-EEEEEeccC-----CCCcc
Q psy10034 236 EASLPIRYLGVSTCFRQEDL-----------------------------------TKSIA-YRVVNIVSG-----ALNHA 274 (399)
Q Consensus 236 y~~LPlk~~~~s~~fR~E~g-----------------------------------~LgLp-yrvv~~~sg-----dlg~~ 274 (399)
...+|+|+++++.|||+|.. .||.. +|.- ++. =+.+.
T Consensus 203 ~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~LG~~~vRFR--PsekrskyYFPFT 280 (533)
T TIGR00470 203 KRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQFGFTKFRFR--PDEKKSKYYIPET 280 (533)
T ss_pred cCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHhCCceEEec--cCcCCCCCcCCCc
Confidence 34689999999999999941 67752 3332 221 12222
Q ss_pred ccceeceeeecCCCcccceEEEecC
Q psy10034 275 AAKKLDLEAWFPGSGAFRELVSCSN 299 (399)
Q Consensus 275 a~~~ydiE~w~P~~~~~~Ev~s~Sn 299 (399)
+..|.++.|..++|.||..|.-
T Consensus 281 ---EaEVdV~~~k~~gWiEIgG~Gm 302 (533)
T TIGR00470 281 ---QTEVYAYHPKLGEWIEVATFGV 302 (533)
T ss_pred ---eEEEEEEccCCCceEEEEeccc
Confidence 3566777787778999988754
No 113
>KOG1885|consensus
Probab=78.82 E-value=1.4 Score=45.85 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHH
Q psy10034 146 VCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPI 225 (399)
Q Consensus 146 a~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~ 225 (399)
.+..-.++.|++.++..+||.||-||.|.-.. .|--. -=| |..... -+.++||+=.-|--+
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmmn~ia----GGA~A----kPF-IT~hnd----------ldm~LylRiAPEL~l 285 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFLDSRGFLEVETPMMNMIA----GGATA----KPF-ITHHND----------LDMDLYLRIAPELYL 285 (560)
T ss_pred HHHHHHHHHHHHHHhhhcCceEecchhhcccc----Ccccc----Cce-eecccc----------cCcceeeeechHHHH
Confidence 34556799999999999999999999764321 11100 112 222210 135688876555544
Q ss_pred HHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 226 CAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 226 ~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
-.|.-+-. =|+|++|+.||+|-
T Consensus 286 K~LvVGGl-------drVYEIGr~FRNEG 307 (560)
T KOG1885|consen 286 KMLVVGGL-------DRVYEIGRQFRNEG 307 (560)
T ss_pred HHHHhccH-------HHHHHHHHHhhhcC
Confidence 44433221 36899999999995
No 114
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=77.63 E-value=4.4 Score=42.68 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHH
Q psy10034 146 VCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPI 225 (399)
Q Consensus 146 a~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~ 225 (399)
....-.+++.+++.+..+||.||-||.|..-.- | +..--|.. ... . -+-++||+=..|-.+
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~G--G-A~ArPF~T-----hhN----------a-ld~dlyLRIApELyL 240 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPIPG--G-AAARPFIT-----HHN----------A-LDMDLYLRIAPELYL 240 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEeccccccccCC--C-ccccccee-----eec----------c-cCCceEEeeccHHHH
Confidence 345667889999999999999999998765421 1 11122221 111 0 134789987667655
Q ss_pred HHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 226 CAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 226 ~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
--+.-.-. =|+|+++++||+|-
T Consensus 241 KRliVGG~-------erVfEIgr~FRNEG 262 (502)
T COG1190 241 KRLIVGGF-------ERVFEIGRNFRNEG 262 (502)
T ss_pred HHHHhcCc-------hhheeeccccccCC
Confidence 44433321 27999999999995
No 115
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=62.35 E-value=19 Score=38.66 Aligned_cols=88 Identities=10% Similarity=0.099 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHH-HHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVM-QEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICA 227 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~-~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~ 227 (399)
.+.+.+-+++.|...||+|+.+-.|+..+.. ..-+. + .++...|.+.- +.+--+|++|-=+.+..
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~-~--~~~~v~l~NPi-----------s~e~s~lR~SLlp~LL~ 429 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRI-E--DNNDVKVANPK-----------TLEYTIVRTSLLPGLLE 429 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhcc-C--CCCcEEeCCCC-----------chhhhHhHhhhHHHHHH
Confidence 4566666788899999999999999998654 43321 1 12345565431 12334677776556665
Q ss_pred HHhcCcCCCCCcCceeeeecccccc
Q psy10034 228 VHRDSWLPEASLPIRYLGVSTCFRQ 252 (399)
Q Consensus 228 l~~~~i~sy~~LPlk~~~~s~~fR~ 252 (399)
...... .+..|++++++|.+|..
T Consensus 430 ~~~~N~--~~~~~~~lFEiG~Vf~~ 452 (551)
T TIGR00471 430 TLSENK--HHELPQKIFEIGDVVVK 452 (551)
T ss_pred HHHhcc--cCCCCeeEEEEEEEEEc
Confidence 444333 45789999999999943
No 116
>PRK14127 cell division protein GpsB; Provisional
Probab=53.73 E-value=36 Score=28.70 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=36.8
Q ss_pred CCCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10034 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIE-NDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (399)
Q Consensus 1 ~MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~-ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k 69 (399)
|+|...-|++ ..+.. .-||++.+.||+.+. .-+.+..+..+...|+.+...+..++..+..
T Consensus 4 ~~LTp~DI~~------KeF~~--~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 4 IKLTPKDILE------KEFKT--SMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CCCCHHHHhh------CccCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566655 22333 347888766776543 3445666667777777777777777666543
No 117
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=53.39 E-value=22 Score=38.67 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHH-HHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEV-MQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICA 227 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l-~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~ 227 (399)
.+.+.+.+++.|...||+|+.+-.|+..+. +...+. +.-+....+|.+.- +.+--+|++|-=+.+..
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~-~~~~~~~v~I~NP~-----------s~e~~vlRtSLlPgLL~ 466 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNR-EDDGNSAVIIGNPR-----------SADFEVVRTSLLPGLLK 466 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcC-CccCCceEEECCCc-----------chhHHHHHHhhHHHHHH
Confidence 456677788899999999999999998865 544332 21111345555431 12223566664444554
Q ss_pred HHhcCcCCCCCcCceeeeeccccc
Q psy10034 228 VHRDSWLPEASLPIRYLGVSTCFR 251 (399)
Q Consensus 228 l~~~~i~sy~~LPlk~~~~s~~fR 251 (399)
..+... + +.+|++++++|.+|-
T Consensus 467 ~l~~N~-~-~~~p~klFEiG~V~~ 488 (597)
T PLN02265 467 TLGHNK-D-APKPIKLFEVSDVVL 488 (597)
T ss_pred HHHHhh-c-CCCCeeEEEeEeEEe
Confidence 333221 2 245999999999993
No 118
>KOG3863|consensus
Probab=39.10 E-value=42 Score=36.36 Aligned_cols=37 Identities=5% Similarity=0.184 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10034 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (399)
Q Consensus 33 id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k 69 (399)
+|.|+.|..+...++.+.++|..+|+++-+.++.++.
T Consensus 510 Ld~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kq 546 (604)
T KOG3863|consen 510 LDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQ 546 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999998888877654
No 119
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=38.41 E-value=1.1e+02 Score=24.31 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=23.6
Q ss_pred hCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10034 26 RFKNVELVDKVIENDLKWRQFRHKADNFNKF 56 (399)
Q Consensus 26 R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~ 56 (399)
-|++...+..++.|.++...++.+++.|+++
T Consensus 57 ~g~~l~~i~~~l~l~~~~~~l~~~l~~l~~~ 87 (91)
T cd04766 57 LGVNLAGVKRILELEEELAELRAELDELRAR 87 (91)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777767888888888777777777777654
No 120
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=37.38 E-value=25 Score=36.05 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 335 TTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 335 i~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
+.|++.++|++-..++-..||.||+|+..
T Consensus 249 ~~r~~~~~L~~a~~e~~~~LPpwLAP~qV 277 (387)
T PRK14938 249 VGLLVYYFLLESIRKQPPTLPDWLNPIQV 277 (387)
T ss_pred ecHHHHHHHHHhhhHHhCcCCCccCcceE
Confidence 78999999999877777799999999975
No 121
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.94 E-value=1.1e+02 Score=23.10 Aligned_cols=36 Identities=6% Similarity=0.069 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10034 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (399)
Q Consensus 33 id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~ 68 (399)
+-.+..+.++..+++.++++++++...+..++..++
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777888888888888888888888887763
No 122
>KOG4196|consensus
Probab=34.71 E-value=1.2e+02 Score=26.46 Aligned_cols=35 Identities=6% Similarity=0.109 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10034 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (399)
Q Consensus 33 id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~ 67 (399)
|.+=.+|..+...++++++.|+.+--.+..+....
T Consensus 73 v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 73 VQQKHELEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777777766666666555544
No 123
>PHA03386 P10 fibrous body protein; Provisional
Probab=32.40 E-value=44 Score=27.28 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhcCCCCCC--CCCCCCCCCCCCCCCCC
Q psy10034 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSK---VIGEKMKAKEPVGD--SSTLPGNHLHPSVPVSN 93 (399)
Q Consensus 33 id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk---~i~~~~k~~~~~~~--~~~l~PN~~~~~vP~g~ 93 (399)
.+.|-++|.+.-.+|++++.+++.-+.+-. ++..+-..=.++.. .-+-+|+++.|.+|..+
T Consensus 11 r~dIkavd~KVdaLQ~qV~dv~~n~~~LDa~~~qL~~l~tkV~~Iq~iLn~d~iPd~P~p~~p~~~ 76 (94)
T PHA03386 11 LDAVQEVDTKVDALQTQLNGLEEDSQPLDGLPAQLTELDTKVSDIQSILTGDEVPDPPDPPLPLLP 76 (94)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCc
Confidence 466777888888888888888865333222 12111000000000 01226888888888665
No 124
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.43 E-value=1.4e+02 Score=24.83 Aligned_cols=37 Identities=3% Similarity=-0.107 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10034 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (399)
Q Consensus 33 id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k 69 (399)
+-++.++.++..+++.++++++++...+..+|..++.
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3467788888889999999999999999999987754
No 125
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.12 E-value=99 Score=29.64 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10034 32 LVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (399)
Q Consensus 32 ~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~ 66 (399)
.+++++++.++....+.++|+++.+++.+.+.+.-
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 47889999999999999999999999988877653
No 126
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=27.77 E-value=1e+02 Score=34.02 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHH
Q psy10034 147 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPIC 226 (399)
Q Consensus 147 ~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~ 226 (399)
.-.+.+..-+++.|...||+||.+-.|+..+.....+.... +...+...- +.+--+|++|-=+.+.
T Consensus 351 ~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~---~~~~l~NPi-----------S~e~s~mR~sLlp~LL 416 (650)
T COG0072 351 TPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLEND---EALELANPI-----------SEEYSVLRTSLLPGLL 416 (650)
T ss_pred ChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCC---cceEecCCc-----------chhHHHHHHHHHHHHH
Confidence 34455566688889999999999999999998776554332 133333321 1222356666545555
Q ss_pred HHHhcCcCCCCCcC-ceeeeeccccccC
Q psy10034 227 AVHRDSWLPEASLP-IRYLGVSTCFRQE 253 (399)
Q Consensus 227 ~l~~~~i~sy~~LP-lk~~~~s~~fR~E 253 (399)
...+.. .-+.+| ++++++|.+|-..
T Consensus 417 ~~~~~N--~~r~~~~~~iFEiG~v~~~~ 442 (650)
T COG0072 417 EALSYN--KNRKNPDVRIFEIGDVFVKD 442 (650)
T ss_pred HHHHHh--hccCCCCeeEEEeeeeEecC
Confidence 443322 345678 9999999999764
No 127
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=27.51 E-value=73 Score=26.53 Aligned_cols=49 Identities=18% Similarity=-0.037 Sum_probs=37.0
Q ss_pred CccCCHHHHHHHcCCccccccccc-cCceEE-EeccHHHHHHHHHHHHHHH
Q psy10034 110 RKKYSHVDLITMIDGVDSEAGAIV-AGGRGY-FLKGPAVCLQVGLVQYALS 158 (399)
Q Consensus 110 ~~~~dH~el~~~l~l~d~~~~~k~-~G~g~y-~l~~~ga~l~~aL~~~~~d 158 (399)
.+...=+..|..-++|.|+.+-++ +|+|.| +=...+..|.+.+..+|.+
T Consensus 44 WPl~~LRRYG~d~~~FsFEAGRRC~tGeG~f~F~t~~~~~if~~v~~~I~~ 94 (102)
T cd01202 44 WPLLCLRRYGYNSDLFSFESGRRCQTGEGIFAFRCKRAEELFNLLQSYIQE 94 (102)
T ss_pred ccHHHhHhhccCCCEEEEEccCcCCCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence 344455567777889999988776 788887 5568888899888887654
No 128
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=27.18 E-value=1.1e+02 Score=26.12 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeEe-cCCccc
Q psy10034 147 CLQVGLVQYALSKWIEKGYTPL-YTPFFM 174 (399)
Q Consensus 147 ~l~~aL~~~~~d~~~~~Gy~ev-~~P~l~ 174 (399)
.....+.+.+.+.|.++||+++ ..|+|+
T Consensus 35 ~~~~~i~~~v~~~L~~~G~~~~~~~aDl~ 63 (151)
T PF13590_consen 35 LDDQRIQDAVEQELAAKGYRRVPENADLL 63 (151)
T ss_pred HHHHHHHHHHHHHHHHCCCeecccCCCEE
Confidence 3455677778888999999997 555443
No 129
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=26.63 E-value=2.2e+02 Score=22.79 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=30.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhcC
Q psy10034 31 ELVDKVIENDLKWRQFRHKADNFN--------KFKNLCSKVIGEKMKAK 71 (399)
Q Consensus 31 ~~id~i~~ld~~~r~l~~~~e~Lr--------~~rN~~sk~i~~~~k~~ 71 (399)
..+.+++.||++|-..+.+.-.+= ...|.++++|+++.+.+
T Consensus 16 ~~~k~F~~Le~~RE~aIeeav~~c~~g~pFs~d~IN~vT~~mN~LAk~g 64 (84)
T PF10752_consen 16 AIIKQFLQLEQQREAAIEEAVSLCKQGEPFSTDKINEVTKEMNELAKQG 64 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHHcC
Confidence 457888899988888877664442 35799999999987754
No 130
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.01 E-value=2.2e+02 Score=27.87 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=15.0
Q ss_pred CchHHHhccCCCCHHHHHHHHHhh
Q psy10034 3 LDLDLFRTEKGGDPEKVRKNQKDR 26 (399)
Q Consensus 3 lDi~~ir~~k~~n~e~v~~~l~~R 26 (399)
++..|||. ..+.|.++.+.+
T Consensus 166 vkV~WLR~----~L~Ei~Ea~e~~ 185 (269)
T PF05278_consen 166 VKVDWLRS----KLEEILEAKEIY 185 (269)
T ss_pred cchHHHHH----HHHHHHHHHHHH
Confidence 57789998 788888775544
No 131
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=25.96 E-value=1.2e+02 Score=34.26 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCc
Q psy10034 154 QYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSW 233 (399)
Q Consensus 154 ~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i 233 (399)
+-+++.|...||+|+.+-.|+..+.+...+... .+....|.+.- +.+.-+|+++-=+.+...... .
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~--~~~~i~l~NPi-----------s~e~s~lR~SLlpgLL~~~~~-N 563 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPK--LENLVEIKNPL-----------SNERSVLRTSLLPSLLEVLAY-N 563 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHhhcCCC--CCceEEEeCCC-----------chHHHHHHHhhHHHHHHHHHH-H
Confidence 456788899999999999999996665443221 11245665432 122235666654444433222 2
Q ss_pred CCCCCcCceeeeeccccc
Q psy10034 234 LPEASLPIRYLGVSTCFR 251 (399)
Q Consensus 234 ~sy~~LPlk~~~~s~~fR 251 (399)
.....-|++++++|.+|.
T Consensus 564 ~~~~~~~~~lFEiG~V~~ 581 (798)
T TIGR00472 564 QNRKNKDVKIFEIGKVFA 581 (798)
T ss_pred HhCCCCCEeEEeeecccC
Confidence 234456899999999994
No 132
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.24 E-value=2.1e+02 Score=23.18 Aligned_cols=31 Identities=10% Similarity=-0.034 Sum_probs=18.1
Q ss_pred hCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10034 26 RFKNVELVDKVIENDLKWRQFRHKADNFNKF 56 (399)
Q Consensus 26 R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~ 56 (399)
-|++...+..++++.+++-.+..++..+.++
T Consensus 57 ~G~~l~~i~~~l~l~~~~~~l~~~~~~~~~~ 87 (98)
T cd01279 57 EGFNLAGIKRIIELYPQVLLLQCRSCEHATE 87 (98)
T ss_pred CCCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4666666777777765555555444444433
No 133
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=25.22 E-value=90 Score=34.74 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAV 228 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l 228 (399)
.+.+.+-+++.|...||+|+.+-.|+..+.+ + +....|.+.- +.+--+|++|-=+++...
T Consensus 400 ~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~--------~-~~~i~l~NPi-----------S~e~s~lR~SLlpgLL~~ 459 (704)
T CHL00192 400 DYNTRDKIRSYLRNLGLTELIHYSLVKQESF--------S-KNEIKLKNPL-----------IKDYSTLRSSLLPGLIEA 459 (704)
T ss_pred HHHHHHHHHHHHHhCCCceEecccccChhhc--------C-CCcEEEeCCC-----------chHHHHHHHHHHHHHHHH
Confidence 4555666788899999999999999988642 1 1345665431 122336777654455543
Q ss_pred HhcCcCCCCCcCceeeeecccccc
Q psy10034 229 HRDSWLPEASLPIRYLGVSTCFRQ 252 (399)
Q Consensus 229 ~~~~i~sy~~LPlk~~~~s~~fR~ 252 (399)
... ..+....|++++++|.+|-.
T Consensus 460 ~~~-N~~r~~~~~rlFEiG~Vf~~ 482 (704)
T CHL00192 460 VQE-NLKQGNSTLEGFEIGHVFNL 482 (704)
T ss_pred HHH-HHhcCCCCEeEEEeeeeEcC
Confidence 332 23444568999999999943
No 134
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.20 E-value=1.4e+02 Score=28.98 Aligned_cols=34 Identities=6% Similarity=0.149 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10034 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (399)
Q Consensus 34 d~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~ 67 (399)
+.+.+|.+++..|+.++++|..+++.+.+++...
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emrts 37 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLERRRERIEKEMRTS 37 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3577899999999999999999999999998753
No 135
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=24.93 E-value=1.1e+02 Score=34.55 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAV 228 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l 228 (399)
.+.+.+-+++.|...||+|+.+-.|+..+....-+ +. .....|.+.- +.+.-+|++|-=+.+...
T Consensus 489 ~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~-~~---~~~i~l~NPi-----------s~e~~~lR~SLlp~LL~~ 553 (791)
T PRK00629 489 AQRLLRRLRRALAALGYQEVITYSFVSPEDAKLFG-LN---PEPLLLLNPI-----------SEELSVMRTSLLPGLLEA 553 (791)
T ss_pred HHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcC-CC---CCeEEEeCCC-----------chHHHHHHHhhHHHHHHH
Confidence 44455567888899999999999999997765433 11 1334554431 122236777654455543
Q ss_pred HhcCcCCCCCcCceeeeecccccc
Q psy10034 229 HRDSWLPEASLPIRYLGVSTCFRQ 252 (399)
Q Consensus 229 ~~~~i~sy~~LPlk~~~~s~~fR~ 252 (399)
.+. ......-|++++++|.+|..
T Consensus 554 ~~~-N~~~~~~~i~lFEiG~Vf~~ 576 (791)
T PRK00629 554 VAY-NLNRGNKDVALFEIGRVFLP 576 (791)
T ss_pred HHH-HHhCCCCCEeEEeeeeeeCC
Confidence 322 12344568999999999954
No 136
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=24.77 E-value=2.4e+02 Score=29.91 Aligned_cols=57 Identities=7% Similarity=0.155 Sum_probs=46.5
Q ss_pred hHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10034 5 LDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (399)
Q Consensus 5 i~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~ 68 (399)
|+.++. |.|.++..+++.+.. ++++-...+++-+|-.+++.+..+..++.|.|+..+
T Consensus 346 i~~L~~----~~d~L~~q~~kq~Is---~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~ 402 (622)
T COG5185 346 IKALQS----NIDELHKQLRKQGIS---TEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRK 402 (622)
T ss_pred HHHHHh----hHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHH
Confidence 677888 888999888888765 456777788889999999999999999999887643
No 137
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=24.67 E-value=1.7e+02 Score=24.63 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=25.3
Q ss_pred CceeEEEcccccccchHHHHHHHHHhcCCCCc
Q psy10034 320 EKIEFVHMLNATACATTRVICAILETHQTETG 351 (399)
Q Consensus 320 ~~~~~vHtlngt~~ai~R~i~allE~~q~~~g 351 (399)
.+.-|++. |++....+-.|+.|=+.|+++||
T Consensus 69 ~~slfl~V-n~~~p~~~~~~~~lY~~~kd~DG 99 (112)
T cd01611 69 EKALFLFV-NNSLPPTSATMSQLYEEHKDEDG 99 (112)
T ss_pred cceEEEEE-CCccCCchhHHHHHHHHhCCCCC
Confidence 34567664 66777889999999999999999
No 138
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=24.37 E-value=3.1e+02 Score=30.76 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=35.3
Q ss_pred hHHHhccCCCCHHHHHHHHHhh-CCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10034 5 LDLFRTEKGGDPEKVRKNQKDR-FKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (399)
Q Consensus 5 i~~ir~~k~~n~e~v~~~l~~R-~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~ 67 (399)
|+.||..+ +.+.+++.|..+ ++.....+.|+++- -++=...+.++|+.+.+++.++|..+
T Consensus 386 i~iir~~~--~~~~~~~~l~~~f~~~~~q~~~il~m~-l~~lt~~e~~kl~~e~~~l~~~i~~l 446 (738)
T TIGR01061 386 IKLIRSSE--DKSDAKENLIDNFKFTENQAEAIVSLR-LYRLTNTDIFELKEEQNELEKKIISL 446 (738)
T ss_pred hHHHHcCC--CHHHHHHHHHHhcCCCHHHHHHHHhhH-HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66777754 677888999988 45544456666553 22222344555555555555555544
No 139
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.78 E-value=49 Score=27.88 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=26.5
Q ss_pred hCCChHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10034 26 RFKNVELVDK-VIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (399)
Q Consensus 26 R~~~~~~id~-i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~ 67 (399)
||++.+.||. |-.+...+..+..+...|+.+.+.+..++...
T Consensus 16 rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 16 RGYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 6888766776 44566667777777777777777666666554
No 140
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=21.19 E-value=1.3e+02 Score=25.15 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=32.5
Q ss_pred HcCCccccccccc-cCceEEEeccH-HHHHHHHHHHHHHHHHHH
Q psy10034 121 MIDGVDSEAGAIV-AGGRGYFLKGP-AVCLQVGLVQYALSKWIE 162 (399)
Q Consensus 121 ~l~l~d~~~~~k~-~G~g~y~l~~~-ga~l~~aL~~~~~d~~~~ 162 (399)
.-++|.|+.|-++ +|+|.|.+.=. +..|.+.+...+...+.+
T Consensus 57 ~~~~FsfEaGRrc~tG~G~f~f~t~~~~~I~~~v~~~i~~~~~~ 100 (104)
T cd00824 57 DSNLFSFEAGRRCVTGEGIFTFQTDRAEEIFQNVHETILAAMKA 100 (104)
T ss_pred CCCEEEEEccCcCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 3478999977655 78898866555 999999999998886654
No 141
>PHA02047 phage lambda Rz1-like protein
Probab=21.00 E-value=3.3e+02 Score=22.52 Aligned_cols=36 Identities=3% Similarity=0.170 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10034 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (399)
Q Consensus 34 d~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k 69 (399)
.++-.+..+...+|+.++.|.++.|+.+++|.....
T Consensus 41 ~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 41 ARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888899999999999999999987544
No 142
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=20.95 E-value=1.9e+02 Score=24.26 Aligned_cols=43 Identities=14% Similarity=-0.033 Sum_probs=32.8
Q ss_pred HHHHHHcCCccccccccc-cCceEE-EeccHHHHHHHHHHHHHHH
Q psy10034 116 VDLITMIDGVDSEAGAIV-AGGRGY-FLKGPAVCLQVGLVQYALS 158 (399)
Q Consensus 116 ~el~~~l~l~d~~~~~k~-~G~g~y-~l~~~ga~l~~aL~~~~~d 158 (399)
+..|..-++|.|+.|.++ +|.|.| |....|-.|.+++..-|..
T Consensus 52 RryG~d~~~FsFEAGRrC~tGeG~f~F~t~~~~~if~~v~~~i~~ 96 (104)
T cd01203 52 RKYGRDKGKFSFEAGRRCTSGEGVFTFDTTQGNEIFRAVEAAIKS 96 (104)
T ss_pred hhhcccCCEEEEEecCcCCCCCcEEEEecCCHHHHHHHHHHHHHH
Confidence 345556789999988776 788876 6678899999888876654
No 143
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=20.83 E-value=3.5e+02 Score=30.93 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=31.8
Q ss_pred hHHHhccCCCCHHHHHHHHHhhC----------CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10034 5 LDLFRTEKGGDPEKVRKNQKDRF----------KNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIG 65 (399)
Q Consensus 5 i~~ir~~k~~n~e~v~~~l~~R~----------~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~ 65 (399)
++.||+.+ +.+.+++.|..+. .....++.|+++-- +|-...+.++++++..++.++|+
T Consensus 375 i~~Ir~s~--~~~~a~~~l~~~~~p~~~~l~r~lte~qa~aIlemrL-~rlt~le~~k~~~e~~~l~~~i~ 442 (869)
T PRK12758 375 YKEIEEAE--TWEAVIEAIDKGLEPFKKQFIREVTEDDIVRLTEIKI-KRISKFDSDKADELIARLEAEIA 442 (869)
T ss_pred HHHHHcCC--CHHHHHHHHHHhcccchhhhcCCCCHHHHHHHHHhHH-HHHhchhHHHHHHHHHHHHHHHH
Confidence 45677654 7888999988875 33344566665532 22223344444444444444443
No 144
>KOG4196|consensus
Probab=20.32 E-value=4.1e+02 Score=23.21 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=31.5
Q ss_pred HhhCCChHhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhh
Q psy10034 24 KDRFKNVELVDKVIENDLKWRQFR-------------HKADNFNKFKNLCSKVIGEKMK 69 (399)
Q Consensus 24 ~~R~~~~~~id~i~~ld~~~r~l~-------------~~~e~Lr~~rN~~sk~i~~~~k 69 (399)
+-||.+ -++|+.|-+++|.|+ ++-++|.+++..+..+|.+++.
T Consensus 40 ~LrG~~---reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~ 95 (135)
T KOG4196|consen 40 HLRGLS---REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKE 95 (135)
T ss_pred HhcCCC---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446655 367888888888874 4567788888888888877764
No 145
>PLN02788 phenylalanine-tRNA synthetase
Probab=20.29 E-value=3.8e+02 Score=27.87 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=12.1
Q ss_pred eeeeeccccccCC
Q psy10034 242 RYLGVSTCFRQED 254 (399)
Q Consensus 242 k~~~~s~~fR~E~ 254 (399)
++...+.|||++.
T Consensus 149 ~~~~~g~VyRrD~ 161 (402)
T PLN02788 149 HFLVTGDVYRRDS 161 (402)
T ss_pred cEEEEeeEeecCC
Confidence 8999999999986
No 146
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=20.01 E-value=3.2e+02 Score=22.15 Aligned_cols=43 Identities=5% Similarity=-0.065 Sum_probs=20.7
Q ss_pred HHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10034 23 QKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIG 65 (399)
Q Consensus 23 l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~ 65 (399)
++.-|+..+.+.+++..+.....+..++++++++.+.+.....
T Consensus 53 l~~~G~~l~ei~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~ 95 (102)
T cd04775 53 LQAGGLPLEEIAGCLAQPHVQAILEERLQSLNREIQRLRQQQQ 95 (102)
T ss_pred HHHCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444665544555554443334444455555555555444443
Done!