Query psy10034
Match_columns 399
No_of_seqs 216 out of 1821
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:10:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vbb_A Seryl-tRNA synthetase, 100.0 2E-108 6E-113 849.8 28.5 392 1-399 1-494 (522)
2 3qne_A Seryl-tRNA synthetase, 100.0 9E-104 3E-108 809.4 23.5 371 2-389 1-458 (485)
3 3lss_A Seryl-tRNA synthetase; 100.0 3E-103 1E-107 806.3 26.6 362 1-384 6-478 (484)
4 1wle_A Seryl-tRNA synthetase; 100.0 4.2E-94 1.4E-98 743.7 28.3 356 1-382 39-482 (501)
5 2dq0_A Seryl-tRNA synthetase; 100.0 3.6E-90 1.2E-94 709.4 24.2 342 2-365 1-440 (455)
6 1ses_A Seryl-tRNA synthetase; 100.0 2E-89 6.8E-94 698.5 18.5 336 2-365 1-414 (421)
7 2dq3_A Seryl-tRNA synthetase; 100.0 3.3E-88 1.1E-92 690.6 26.1 342 2-365 1-419 (425)
8 3err_A Fusion protein of micro 100.0 3.4E-81 1.2E-85 653.0 25.6 265 81-365 210-524 (536)
9 1nj1_A PROR, proline-tRNA synt 100.0 2.7E-51 9.2E-56 426.6 12.8 259 80-363 14-317 (501)
10 3mf2_A BLL0957 protein; aminoa 100.0 2.2E-51 7.6E-56 402.9 11.3 216 136-365 54-333 (346)
11 2cja_A Seryl-tRNA synthetase; 100.0 6.2E-47 2.1E-51 392.8 18.5 243 113-376 203-522 (522)
12 3ial_A Prolyl-tRNA synthetase; 100.0 2.4E-45 8.4E-50 381.2 14.2 249 102-377 14-309 (518)
13 4hvc_A Bifunctional glutamate/ 100.0 2E-43 6.7E-48 367.5 18.6 240 115-377 35-318 (519)
14 1qf6_A THRRS, threonyl-tRNA sy 100.0 3.9E-40 1.3E-44 351.9 7.4 242 94-364 209-543 (642)
15 3uh0_A Threonyl-tRNA synthetas 100.0 4.7E-37 1.6E-41 316.4 16.1 240 108-378 30-356 (460)
16 1nj8_A Proline-tRNA synthetase 100.0 6E-36 2E-40 308.3 18.9 234 112-363 8-285 (459)
17 1evl_A Threonyl-tRNA synthetas 100.0 9E-36 3.1E-40 301.8 8.8 222 113-363 1-301 (401)
18 1hc7_A Prolyl-tRNA synthetase; 100.0 1.1E-34 3.6E-39 300.2 15.5 233 112-363 15-290 (477)
19 1nyr_A Threonyl-tRNA synthetas 100.0 3.5E-35 1.2E-39 314.1 7.3 230 111-363 239-548 (645)
20 2j3l_A Prolyl-tRNA synthetase; 100.0 3.5E-33 1.2E-37 294.8 15.5 168 110-300 18-227 (572)
21 2i4l_A Proline-tRNA ligase; al 100.0 9.3E-33 3.2E-37 284.5 17.6 231 110-363 38-368 (458)
22 1ati_A Glycyl-tRNA synthetase; 100.0 1.7E-32 5.9E-37 285.4 9.0 245 114-363 7-401 (505)
23 3ikl_A DNA polymerase subunit 100.0 9.1E-31 3.1E-35 267.3 7.3 192 137-365 95-353 (459)
24 3a32_A Probable threonyl-tRNA 99.9 1.2E-26 4.1E-31 239.7 11.2 227 112-363 6-341 (471)
25 1g5h_A Mitochondrial DNA polym 99.9 1.5E-26 5.1E-31 237.7 2.2 229 113-365 25-343 (454)
26 2zt5_A Glycyl-tRNA synthetase; 99.8 3.8E-20 1.3E-24 198.6 11.9 143 113-255 68-281 (693)
27 1qe0_A Histidyl-tRNA synthetas 99.7 4.9E-18 1.7E-22 172.2 7.0 109 134-254 4-115 (420)
28 1h4v_B Histidyl-tRNA synthetas 99.6 4.5E-16 1.6E-20 157.9 9.4 109 134-254 5-115 (421)
29 4e51_A Histidine--tRNA ligase; 99.6 2E-15 6.7E-20 155.7 8.3 110 134-255 34-145 (467)
30 1htt_A Histidyl-tRNA synthetas 99.6 1.3E-15 4.3E-20 154.7 6.0 108 134-254 6-115 (423)
31 1wu7_A Histidyl-tRNA synthetas 99.6 4.3E-15 1.5E-19 151.5 8.3 105 134-254 8-113 (434)
32 1z7m_A ATP phosphoribosyltrans 99.4 7.7E-14 2.6E-18 138.5 7.1 110 134-258 24-135 (344)
33 3rac_A Histidine-tRNA ligase; 99.3 9.3E-13 3.2E-17 132.0 5.9 107 134-255 25-132 (373)
34 3od1_A ATP phosphoribosyltrans 99.3 2E-12 6.7E-17 130.8 6.4 107 134-255 12-118 (400)
35 3dsq_A Pyrrolysyl-tRNA synthet 99.2 3.1E-11 1E-15 116.9 11.9 93 148-255 72-164 (288)
36 3lc0_A Histidyl-tRNA synthetas 99.2 3.3E-12 1.1E-16 131.2 5.0 107 134-255 31-138 (456)
37 3net_A Histidyl-tRNA synthetas 99.0 1.7E-10 5.7E-15 118.8 7.1 130 118-255 3-135 (465)
38 4g84_A Histidine--tRNA ligase, 98.9 1.7E-09 5.9E-14 110.6 8.6 102 135-254 17-118 (464)
39 4g85_A Histidine-tRNA ligase, 98.8 2.7E-09 9.3E-14 111.0 7.3 102 135-254 70-171 (517)
40 3qtc_A Pyrrolysyl-tRNA synthet 98.5 2.3E-07 7.8E-12 89.6 8.3 90 149-255 79-170 (290)
41 1usy_A ATP phosphoribosyltrans 98.2 3.9E-07 1.3E-11 87.3 1.5 78 151-255 5-85 (275)
42 1nnh_A Asparaginyl-tRNA synthe 97.1 0.00049 1.7E-08 66.4 5.7 90 143-254 12-102 (294)
43 1wyd_A Hypothetical aspartyl-t 96.8 0.0018 6E-08 65.8 6.9 83 144-255 132-214 (429)
44 1eov_A ASPRS, aspartyl-tRNA sy 96.7 0.0024 8.3E-08 65.8 7.4 96 143-266 175-273 (487)
45 3a5y_A GENX, putative lysyl-tR 96.6 0.0032 1.1E-07 62.1 7.2 91 144-255 34-124 (345)
46 1x54_A Asparaginyl-tRNA synthe 96.5 0.0037 1.3E-07 63.4 6.8 84 143-255 132-215 (434)
47 3nem_A Aspartyl-tRNA synthetas 96.3 0.0061 2.1E-07 62.0 6.9 84 144-255 135-218 (438)
48 3a74_A Lysyl-tRNA synthetase; 96.2 0.0084 2.9E-07 61.8 7.9 86 144-255 172-257 (493)
49 1n9w_A Aspartyl-tRNA synthetas 96.2 0.0042 1.4E-07 62.8 5.2 83 144-255 123-205 (422)
50 2xgt_A Asparaginyl-tRNA synthe 96.1 0.0055 1.9E-07 62.2 5.7 84 143-255 129-212 (435)
51 1e1o_A Lysyl-tRNA synthetase, 96.0 0.012 3.9E-07 61.0 7.4 86 144-255 181-266 (504)
52 3i7f_A Aspartyl-tRNA synthetas 95.6 0.016 5.6E-07 60.3 6.9 94 144-265 242-338 (548)
53 3m4p_A Ehasnrs, asparaginyl-tR 95.5 0.012 4.1E-07 60.1 5.5 83 144-255 154-236 (456)
54 1c0a_A Aspartyl tRNA synthetas 95.5 0.036 1.2E-06 58.3 8.9 85 144-255 136-221 (585)
55 1l0w_A Aspartyl-tRNA synthetas 95.4 0.035 1.2E-06 58.3 8.4 85 144-255 142-227 (580)
56 3bju_A Lysyl-tRNA synthetase; 95.3 0.033 1.1E-06 57.8 7.9 86 144-255 174-259 (521)
57 3l4g_A Phenylalanyl-tRNA synth 95.1 0.13 4.5E-06 53.0 11.6 203 149-382 227-493 (508)
58 4ex5_A Lysine--tRNA ligase; st 94.9 0.016 5.6E-07 60.1 4.2 86 144-255 202-287 (529)
59 1b7y_A Phers, protein (phenyla 94.9 0.07 2.4E-06 52.5 8.5 99 150-254 104-207 (350)
60 2rhq_A Phenylalanyl-tRNA synth 94.5 0.06 2.1E-06 51.6 6.9 87 149-254 55-146 (294)
61 4ah6_A Aspartate--tRNA ligase, 94.0 0.11 3.7E-06 54.9 8.0 85 144-255 146-231 (617)
62 2du3_A O-phosphoseryl-tRNA syn 91.0 1.4 4.8E-05 45.6 11.4 30 149-178 49-78 (534)
63 2du7_A O-phosphoseryl-tRNA syn 89.9 2.4 8.1E-05 44.0 11.9 48 150-197 60-109 (549)
64 3l4g_B Phenylalanyl-tRNA synth 89.4 0.56 1.9E-05 49.2 6.9 91 150-254 394-485 (589)
65 2odr_B Phosphoseryl-tRNA synth 89.1 3.4 0.00012 43.5 12.5 48 150-197 68-117 (648)
66 2odr_A Phosphoseryl-tRNA synth 88.9 3.6 0.00012 43.4 12.5 48 150-197 68-117 (665)
67 2odr_D Phosphoseryl-tRNA synth 88.6 3.9 0.00013 43.3 12.5 48 150-197 68-117 (685)
68 3ig2_A Phenylalanyl-tRNA synth 88.0 0.78 2.7E-05 41.5 6.1 90 150-254 7-97 (213)
69 2odr_C Phosphoseryl-tRNA synth 87.0 5.3 0.00018 42.3 12.3 48 150-197 68-117 (701)
70 3pco_A Phenylalanyl-tRNA synth 85.0 0.51 1.8E-05 45.9 3.3 85 150-255 110-199 (327)
71 3ica_A Phenylalanyl-tRNA synth 83.1 1.1 3.7E-05 40.6 4.5 90 150-254 7-97 (213)
72 2rhq_B Phenylalanyl-tRNA synth 74.8 3.3 0.00011 44.9 5.8 89 149-253 495-584 (795)
73 1b7y_B Phers, protein (phenyla 68.4 6 0.00021 42.8 6.0 87 149-251 491-578 (785)
74 2wt7_B Transcription factor MA 63.2 27 0.00092 27.3 7.2 50 20-69 30-83 (90)
75 3cmq_A Phenylalanyl-tRNA synth 56.7 20 0.0007 35.7 7.0 86 146-254 51-146 (415)
76 3err_A Fusion protein of micro 44.6 53 0.0018 33.8 8.0 57 2-66 1-57 (536)
77 3pco_B Phenylalanyl-tRNA synth 38.6 37 0.0013 36.8 5.9 86 152-254 494-580 (795)
78 3hnw_A Uncharacterized protein 32.0 80 0.0027 26.4 5.7 36 32-67 94-129 (138)
79 2wuj_A Septum site-determining 30.2 42 0.0014 23.7 3.2 35 24-58 16-51 (57)
80 3nmd_A CGMP dependent protein 28.6 1.8E+02 0.0062 21.6 6.9 46 15-66 20-65 (72)
81 3gpv_A Transcriptional regulat 28.6 1.8E+02 0.0062 24.1 7.6 26 41-66 102-127 (148)
82 2jee_A YIIU; FTSZ, septum, coi 26.6 1.7E+02 0.0059 22.2 6.2 9 1-9 1-9 (81)
83 1nlw_A MAD protein, MAX dimeri 25.7 1.2E+02 0.0042 22.7 5.3 34 33-66 46-79 (80)
84 12as_A Asparagine synthetase; 23.7 26 0.00088 33.8 1.3 82 276-361 231-325 (330)
85 1nkp_B MAX protein, MYC proto- 22.8 1.4E+02 0.0049 22.2 5.3 35 33-67 46-80 (83)
86 1nkp_A C-MYC, MYC proto-oncoge 22.6 1.8E+02 0.0061 22.2 5.8 36 33-68 51-86 (88)
87 3net_A Histidyl-tRNA synthetas 21.3 40 0.0014 33.8 2.3 28 330-363 346-374 (465)
88 1h1j_S THO1 protein; SAP domai 20.6 1.2E+02 0.004 21.0 3.9 26 16-41 10-40 (51)
89 1qe0_A Histidyl-tRNA synthetas 20.5 45 0.0015 32.5 2.4 28 330-363 305-332 (420)
No 1
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=1.7e-108 Score=849.81 Aligned_cols=392 Identities=66% Similarity=1.068 Sum_probs=337.3
Q ss_pred CCCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC------
Q psy10034 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPV------ 74 (399)
Q Consensus 1 ~MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~------ 74 (399)
|||||++||++||||||.|++++++|+.+.++||+|++||++||++++++|+|+++||++||+|+++++++++.
T Consensus 1 mmld~~~~r~~~g~n~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~ 80 (522)
T 3vbb_A 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESV 80 (522)
T ss_dssp -CCCGGGSCGGGTCCHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCC
T ss_pred CCcCHHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhh
Confidence 99999999999999999999999999988777999999999999999999999999999999999987765421
Q ss_pred ----C---------------------------CCCCC-----------------CCCCCCCCCCCCCCcC-CCceeEeec
Q psy10034 75 ----G---------------------------DSSTL-----------------PGNHLHPSVPVSNNED-ENGIVRTKG 105 (399)
Q Consensus 75 ----~---------------------------~~~~l-----------------~PN~~~~~vP~g~~e~-~n~~~~~~g 105 (399)
. +...+ |||++|++||+|.||+ +|++|++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~dn~~vr~~g 160 (522)
T 3vbb_A 81 PENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWG 160 (522)
T ss_dssp CGGGCSSSSCCHHHHHTTCSSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHHGGGSCCCCCTTSCCCSCHHHHCEEEEEES
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcccCcEEEEEeC
Confidence 0 00111 7999999999999999 999999999
Q ss_pred CCccCccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCc
Q psy10034 106 DTEVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 185 (399)
Q Consensus 106 ~~~~~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~ 185 (399)
+++.|.++||++||+++|||||+++++++|+|||||+|.|++|++||++|+++++.++||++|.+|.|++.++|.+||||
T Consensus 161 ~~~~~~~rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l 240 (522)
T 3vbb_A 161 DCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240 (522)
T ss_dssp CSSCCCSCCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCC
T ss_pred CCCCCCccCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCc
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc----------
Q psy10034 186 AQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL---------- 255 (399)
Q Consensus 186 ~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g---------- 255 (399)
++|.++||++.+.+.+.. ++..++++||+||+|++++++|+++++||++||++|+++|+|||+|+|
T Consensus 241 ~~f~eemy~v~~~g~~~~----~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~ 316 (522)
T 3vbb_A 241 SQFDEELYKVIGKGSEKS----DDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIF 316 (522)
T ss_dssp C-CCSCCCEEC----------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSS
T ss_pred ccCcccceEeecCCcccc----ccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcc
Confidence 999999999976421000 000135799999999999999999999999999999999999999994
Q ss_pred -------------------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEec
Q psy10034 256 -------------------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCS 298 (399)
Q Consensus 256 -------------------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~S 298 (399)
.||||||+|.+|+||||++++++||||+|+|++++|+||+|||
T Consensus 317 RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScS 396 (522)
T 3vbb_A 317 RVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCS 396 (522)
T ss_dssp SCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEE
T ss_pred eeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCccCCCchhheeceeEecCCCCceeEEEEec
Confidence 8999999999999999999999999999999999999999999
Q ss_pred CcchhhhhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCCcccccCccC
Q psy10034 299 NCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT 378 (399)
Q Consensus 299 nc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~~~~~ 378 (399)
||+||||||++|+|++....+++..||||+||||||++|+|+|||||||++|||+||++|+|||+|...+ +|||++.
T Consensus 397 nc~DyqArr~~iry~~~~~~~~k~~~vhtlNgs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~---~ip~~~~ 473 (522)
T 3vbb_A 397 NCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQE---LIPFVKP 473 (522)
T ss_dssp ECTTHHHHHHTCEESCC---CCCCCBCEEEEEEEEEHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSS---EEECCSC
T ss_pred CCCCCccceeeeEEccccccCCCeeeceEEeccchHHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcce---EeecCCC
Confidence 9999999999999987422246789999999999999999999999999999999999999999976324 9999999
Q ss_pred CCCChHHHHHHHHhhhhccCC
Q psy10034 379 APIDEEETKKQKKQKEGMKKK 399 (399)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~ 399 (399)
.|++.+.+++++||++|+||+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~ 494 (522)
T 3vbb_A 474 APIEQEPSKKQKKQHEGSKKK 494 (522)
T ss_dssp CCC------------------
T ss_pred CCcchhHHHHhhhhhcccccc
Confidence 999999999999999999875
No 2
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=8.7e-104 Score=809.37 Aligned_cols=371 Identities=48% Similarity=0.771 Sum_probs=340.1
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC----
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDS---- 77 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~~~~---- 77 (399)
||||++||++||||||.|++++++|+.+.++||+|++||++||+++.++++|+++||++||+|+++++++++..+.
T Consensus 1 Mldi~~ir~~~~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~ 80 (485)
T 3qne_A 1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEK 80 (485)
T ss_dssp CCCGGGGCGGGTCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCChHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 9999999999999999999999999988777999999999999999999999999999999999998877654220
Q ss_pred ------------------CC------CCCCCCCCCCCCCCCcCCCceeEeecCCc------------cCccCCHHHHHHH
Q psy10034 78 ------------------ST------LPGNHLHPSVPVSNNEDENGIVRTKGDTE------------VRKKYSHVDLITM 121 (399)
Q Consensus 78 ------------------~~------l~PN~~~~~vP~g~~e~~n~~~~~~g~~~------------~~~~~dH~el~~~ 121 (399)
++ -|||++|++||+|.||++|++|++||+++ .|+++||++||++
T Consensus 81 ~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~n~~v~~~g~~~~~~~~~~~~~~~~~~~~dH~elg~~ 160 (485)
T 3qne_A 81 EKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLR 160 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSCGGGCEEEEEECCTTCCSSSSBCTTTCCBCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCccCCEEEEEeCCCCccccccccccccCCCccCHHHHHhh
Confidence 00 18999999999999999999999999987 4678999999999
Q ss_pred cCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCcc
Q psy10034 122 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEK 201 (399)
Q Consensus 122 l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~ 201 (399)
+|||||+++++++|+|||||+|.|++|++||++|+++++.++||++|++|+|++.++|++||||++|+++||++.+.
T Consensus 161 l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~--- 237 (485)
T 3qne_A 161 LDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG--- 237 (485)
T ss_dssp TTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET---
T ss_pred cCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCC--CCCcCceeeeeccccccCCc------------------------
Q psy10034 202 VGDSAPEKDELDDKYLIATSEQPICAVHRDSWLP--EASLPIRYLGVSTCFRQEDL------------------------ 255 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~s--y~~LPlk~~~~s~~fR~E~g------------------------ 255 (399)
++++||+||+|+|++++|++++++ |++||++|+++|+|||+|+|
T Consensus 238 ----------~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~ 307 (485)
T 3qne_A 238 ----------EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLT 307 (485)
T ss_dssp ----------TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEE
T ss_pred ----------CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEe
Confidence 347999999999999999999998 99999999999999999985
Q ss_pred ---------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEec
Q psy10034 256 ---------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQ 314 (399)
Q Consensus 256 ---------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~ 314 (399)
.||||||+|.+|+||||++++++||||+|+|++++|+||+|||||+||||||++|+|++
T Consensus 308 ~pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~iry~~ 387 (485)
T 3qne_A 308 EPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGI 387 (485)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTCEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCccccccceEEec
Confidence 89999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCCcccccCccCCCCChHHHHHH
Q psy10034 315 TKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQ 389 (399)
Q Consensus 315 ~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
....+++..||||+||||||++|+|+|||||||++|||+||++|+|||+|.+ + +|||++..|++...++..
T Consensus 388 ~~~~~~~~~~vhtlNgt~lav~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~-~---~i~~~~~~~~~~~~~~~~ 458 (485)
T 3qne_A 388 KQQNQQEKKYVHCLNSTLSATERTICCILENYQKEDGLVIPEVLRKYIPGEP-E---FIPYIKELPKNTTSVKKA 458 (485)
T ss_dssp ------CCCBCEEEEEEEEEHHHHHHHHHHHSEETTEEECCHHHHTTSTTCC-S---EEECCCCCSSCC------
T ss_pred ccccCCCceeeEEEecchhHHHHHHHHHHHhcCCCCceecChhhcCccCCcc-e---EeeccccCCccccccccc
Confidence 5322466789999999999999999999999999999999999999999884 3 999999999987766543
No 3
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=2.8e-103 Score=806.26 Aligned_cols=362 Identities=51% Similarity=0.843 Sum_probs=330.8
Q ss_pred CCCchHHHhccCCCCH--HHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------
Q psy10034 1 MVLDLDLFRTEKGGDP--EKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKA-------- 70 (399)
Q Consensus 1 ~MlDi~~ir~~k~~n~--e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~-------- 70 (399)
|||||++||+ |+ +.|++++++|+.+.++||+|++||++||+++.++++|+++||++||+|+++++.
T Consensus 6 mmldi~~~r~----~~~~~~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~ 81 (484)
T 3lss_A 6 MVLDIQLFRD----ETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTS 81 (484)
T ss_dssp CCCCGGGGGS----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred ccccHHHHHc----CCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 8999999999 85 899999999998876799999999999999999999999999999999998772
Q ss_pred ----------------CCCCCCC------C-------C--------------------CCCCCCCCCCCCCCCcCC-Cce
Q psy10034 71 ----------------KEPVGDS------S-------T--------------------LPGNHLHPSVPVSNNEDE-NGI 100 (399)
Q Consensus 71 ----------------~~~~~~~------~-------~--------------------l~PN~~~~~vP~g~~e~~-n~~ 100 (399)
+++..+. + + -|||++|++||+|.||++ |++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~~n~~ 161 (484)
T 3lss_A 82 EIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTV 161 (484)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEE
T ss_pred cccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcccCcEE
Confidence 2222111 0 0 079999999999999998 999
Q ss_pred eEeecCCccCccCCHHHHHHHcCCccccccc-cccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHH
Q psy10034 101 VRTKGDTEVRKKYSHVDLITMIDGVDSEAGA-IVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVM 179 (399)
Q Consensus 101 ~~~~g~~~~~~~~dH~el~~~l~l~d~~~~~-k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~ 179 (399)
+++||+++.|+++||++||+++|||||++++ +++|+|||||+|.||+|++||++|+++++.++||++|.+|+|++.++|
T Consensus 162 v~~~g~~~~~~~rdH~~Lg~~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~ 241 (484)
T 3lss_A 162 VRTFGNTTKRAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVM 241 (484)
T ss_dssp EEEESCTTCCCSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHH
T ss_pred EEecCCCCCCCCCCHHHHHhhCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHH
Confidence 9999999989999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc----
Q psy10034 180 QEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL---- 255 (399)
Q Consensus 180 ~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g---- 255 (399)
++||||++|+++||++.+. +++|||+||||+++++||+++++||++||++|+++|+|||+|+|
T Consensus 242 ~~sG~~~~f~e~mf~v~~~-------------~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Gr 308 (484)
T 3lss_A 242 GEVAQLSQFDEELYQVSGD-------------GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGR 308 (484)
T ss_dssp HHHSCHHHHHHTCCEEESS-------------SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSS
T ss_pred HhcCCcccccccceEeecC-------------CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCc
Confidence 9999999999999999864 35899999999999999999999999999999999999999983
Q ss_pred -------------------------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccc
Q psy10034 256 -------------------------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFR 292 (399)
Q Consensus 256 -------------------------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~ 292 (399)
.||||||+|.+|+||||++++++||||+|+|++++|+
T Consensus 309 dt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~tgdlg~~a~~~yDiE~w~P~~~~~~ 388 (484)
T 3lss_A 309 DTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFR 388 (484)
T ss_dssp CCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEE
T ss_pred ccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchhheechheecCCCCCee
Confidence 8999999999999999999999999999999999999
Q ss_pred eEEEecCcchhhhhccccEEeccC---CCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCC
Q psy10034 293 ELVSCSNCLDYQSRRLLVRYGQTK---KMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNE 369 (399)
Q Consensus 293 Ev~s~Snc~Dyqa~rl~i~y~~~~---~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~ 369 (399)
||+|||||+||||||++|+|++.. ..+++..||||+||||||++|+|+|||||||++|||+||++|+|||+|. +
T Consensus 389 EIsS~Snc~dyqArr~~iry~~~~~~~~~~~~~~~vhtlNgt~~av~R~l~AiLEn~q~~dGi~iP~~L~pym~g~--~- 465 (484)
T 3lss_A 389 ELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGI--E- 465 (484)
T ss_dssp EEEEEEECTTHHHHHHTCEESSCCC----CCSCEECEEEEEEEEEHHHHHHHHHHHHBCSSEEECCGGGGGGTTTC--C-
T ss_pred EEEEecCcccccccccceEEeccccccccCCCceeeeEEeccchHHHHHHHHHHHhcCCCCCeeCChhhcCccCCc--c-
Confidence 999999999999999999999753 1135679999999999999999999999999999999999999999999 5
Q ss_pred cccccCccCCCCChH
Q psy10034 370 AGEIPFVKTAPIDEE 384 (399)
Q Consensus 370 ~~~~~~~~~~~~~~~ 384 (399)
+|||++..|++..
T Consensus 466 --~i~~~~~~~~~~~ 478 (484)
T 3lss_A 466 --MIRFENNAQAEGT 478 (484)
T ss_dssp --EEECCCC------
T ss_pred --eeecCccCCcccc
Confidence 9999999998754
No 4
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=4.2e-94 Score=743.74 Aligned_cols=356 Identities=28% Similarity=0.496 Sum_probs=327.7
Q ss_pred CCCchHHHhccCCCCHHHHHHHHHhhCCC--hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----
Q psy10034 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKN--VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP----- 73 (399)
Q Consensus 1 ~MlDi~~ir~~k~~n~e~v~~~l~~R~~~--~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~----- 73 (399)
|||||++||+ |+|.|++++++|+.+ .++||+|+++|++||+++.++++|+++||++||+|++++++++.
T Consensus 39 pmlD~~~ir~----n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~ 114 (501)
T 1wle_A 39 PLLDMESLCA----YPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQ 114 (501)
T ss_dssp CCCCHHHHHH----SHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGG
T ss_pred CccCHHHHHh----CHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccc
Confidence 7999999999 999999999999986 45699999999999999999999999999999999987765421
Q ss_pred ---CCC----C------------------CC------CCCCCCCCCCCCCCCcCCCceeEeecCCcc--CccCCHHHHHH
Q psy10034 74 ---VGD----S------------------ST------LPGNHLHPSVPVSNNEDENGIVRTKGDTEV--RKKYSHVDLIT 120 (399)
Q Consensus 74 ---~~~----~------------------~~------l~PN~~~~~vP~g~~e~~n~~~~~~g~~~~--~~~~dH~el~~ 120 (399)
..+ . ++ -|||++|++||+| +|++|++|++||+++. |+++||++||+
T Consensus 115 ~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~g-~e~~n~~v~~~g~~~~~~f~~~dH~~Lg~ 193 (501)
T 1wle_A 115 DPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG-DESQARVLHVVGDKPAFSFQPRGHLEIAE 193 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS-SGGGCEEEEEESCCCCCSSCCCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-CCCCCeEEEEeCCCCCCCCCCCCHHHHHh
Confidence 000 0 00 1899999999999 7889999999999874 68899999999
Q ss_pred HcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccc-cceEEeccC
Q psy10034 121 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE-ELYKVIGKG 199 (399)
Q Consensus 121 ~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~-~~f~i~~~~ 199 (399)
++|||||+++++++|+|+|||+|.|++|++||++|+++++.++||++|++|+|++.++|++||||+.|.+ +||++.+.+
T Consensus 194 ~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~ 273 (501)
T 1wle_A 194 KLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSR 273 (501)
T ss_dssp HHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTT
T ss_pred hcCceecccccccccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999997642
Q ss_pred ccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc------------------------
Q psy10034 200 EKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------------------ 255 (399)
Q Consensus 200 ~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------------------ 255 (399)
++++||+||+|++++++|+++++||++||++|+++|+|||+|+|
T Consensus 274 ------------~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~ 341 (501)
T 1wle_A 274 ------------FEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTG 341 (501)
T ss_dssp ------------SSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEEC
T ss_pred ------------CCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeC
Confidence 35799999999999999999999999999999999999999974
Q ss_pred ----------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEe
Q psy10034 256 ----------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYG 313 (399)
Q Consensus 256 ----------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~ 313 (399)
.||||||+|.+|+||||++++++||+|+|+|++++|+||+|||||+||||+||+|+|+
T Consensus 342 pe~e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR~~iry~ 421 (501)
T 1wle_A 342 PGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQ 421 (501)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcccCCchhheecHhhcccccccceeEEeccccccchhhhcCcEEE
Confidence 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCc-eecCcccccccCCcccCCcccccCccCCCCC
Q psy10034 314 QTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFVPAVYVNEAGEIPFVKTAPID 382 (399)
Q Consensus 314 ~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~g-i~iP~~L~py~~~~~~~~~~~~~~~~~~~~~ 382 (399)
+. +++..+|||+||||||++|+|+|||||||+++| |+||+||+|||| . + +|++.+..|++
T Consensus 422 ~~---~gk~~~vHtlngSglav~R~l~alLEn~q~~dG~i~iP~~L~Py~g-~--~---~i~~~~~~~~~ 482 (501)
T 1wle_A 422 TE---AGELQFAHTVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYLG-T--D---RITTPTHVPLQ 482 (501)
T ss_dssp CS---SSCEEECEEEEEEEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHHS-S--S---EECCCSSCCCE
T ss_pred CC---CCCEEEEEEECCccchHHHHHHHHHHhCCCCCCCEeCChhhcCccC-c--c---cccCcccCchh
Confidence 85 467789999999999999999999999999999 999999999996 4 3 77766666654
No 5
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=3.6e-90 Score=709.44 Aligned_cols=342 Identities=42% Similarity=0.710 Sum_probs=321.2
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCC-C-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC--
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFK-N-VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDS-- 77 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~-~-~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~~~~-- 77 (399)
||||++||+ |||.|++++++||. + .++||+|+++|++||+++.++++|+++||++||+|+++++++++..+.
T Consensus 1 mld~~~~r~----n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~ 76 (455)
T 2dq0_A 1 MLDIKLIRE----NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLA 76 (455)
T ss_dssp CCCHHHHHH----CHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHH
T ss_pred CCCHHHHHh----CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 999999999 99999999999998 7 677999999999999999999999999999999999988776543210
Q ss_pred --------------------CC------CCCCCCCCCCCCCCCcCCCceeEeecCCcc----------------------
Q psy10034 78 --------------------ST------LPGNHLHPSVPVSNNEDENGIVRTKGDTEV---------------------- 109 (399)
Q Consensus 78 --------------------~~------l~PN~~~~~vP~g~~e~~n~~~~~~g~~~~---------------------- 109 (399)
++ -|||++|++||+|.||++|++|++||+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g~~e~~n~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (455)
T 2dq0_A 77 KSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILE 156 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEESCEEEEGGGHHHHHHHHTTCSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCCCEEEEEcCCCCCccccchhhhccccccccccccc
Confidence 00 189999999999999999999999999763
Q ss_pred CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccccc
Q psy10034 110 RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFD 189 (399)
Q Consensus 110 ~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~ 189 (399)
|+++||++||+++|||||+++++++|+|+|+|+|.|++|+++|++|+++.+.++||++|.+|.|++.++|.+||||++|.
T Consensus 157 ~~~~~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~ 236 (455)
T 2dq0_A 157 WKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFE 236 (455)
T ss_dssp SCCCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHH
T ss_pred CccCCHHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCCh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc--------------
Q psy10034 190 EELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL-------------- 255 (399)
Q Consensus 190 ~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g-------------- 255 (399)
++||++.+ +++||+||+|++++.+|+++++||++||++|+++|+|||+|++
T Consensus 237 ~emy~~~d---------------~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rq 301 (455)
T 2dq0_A 237 DVIYKVED---------------EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQ 301 (455)
T ss_dssp HTCCBBTT---------------SSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSE
T ss_pred HhhCeecC---------------CcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeee
Confidence 99999863 4799999999999999999999999999999999999999983
Q ss_pred -------------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhh
Q psy10034 256 -------------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ 304 (399)
Q Consensus 256 -------------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyq 304 (399)
.|||||+++.++++++|++++++||+|+|+|++++|+|++|||||+|||
T Consensus 302 F~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~Dfq 381 (455)
T 2dq0_A 302 FHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQ 381 (455)
T ss_dssp EEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTT
T ss_pred eEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCceEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhH
Confidence 8999999999999999999999999999999999999999999999999
Q ss_pred hhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCc-eecCcccccccCCc
Q psy10034 305 SRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFVPAV 365 (399)
Q Consensus 305 a~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~g-i~iP~~L~py~~~~ 365 (399)
++||+|+|++.. ++++.+|||+||||||++|+|+|||||||+++| |.||+||+||| |.
T Consensus 382 arR~~iry~~~~--~g~~~~vHtlngs~lav~R~i~allE~~~~~dG~i~iP~~LaP~~-g~ 440 (455)
T 2dq0_A 382 ARRLNIRFRDRT--DEKPRYVHTLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYT-GF 440 (455)
T ss_dssp HHHHTEEEESST--TSCCEECEEEEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHH-SC
T ss_pred hhccCcEEecCC--CCcEEEEEEEechHhHHHHHHHHHHHHccCCCCcEeCChhhCCcc-cc
Confidence 999999999751 356789999999999999999999999999999 99999999999 76
No 6
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=2e-89 Score=698.51 Aligned_cols=336 Identities=25% Similarity=0.481 Sum_probs=314.5
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-----
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----- 76 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~~~----- 76 (399)
||||++||+ |||.|++++++||.+.+ ||+|+++|++||+++.++++|+++||++||+|++ +++++..+
T Consensus 1 mld~~~~r~----~~~~~~~~~~~r~~~~~-~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~~~~~~l~~~~ 73 (421)
T 1ses_A 1 MVDLKRLRQ----EPEVFHRAIREKGVALD-LEALLALDREVQELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARG 73 (421)
T ss_dssp CCCHHHHHH----CHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--SCHHHHHHHHHHH
T ss_pred CCCHHHHHh----CHHHHHHHHHHhCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHH
Confidence 999999999 99999999999998876 9999999999999999999999999999999986 22111100
Q ss_pred ------C-----------CC------CCCCCCCCCCCCCCCcCCCceeEeecCCcc--CccCCHHHHHHHcCCccccccc
Q psy10034 77 ------S-----------ST------LPGNHLHPSVPVSNNEDENGIVRTKGDTEV--RKKYSHVDLITMIDGVDSEAGA 131 (399)
Q Consensus 77 ------~-----------~~------l~PN~~~~~vP~g~~e~~n~~~~~~g~~~~--~~~~dH~el~~~l~l~d~~~~~ 131 (399)
. ++ -|||++|++||+| ||++|+++++||+++. |+++||++||+++|||| ++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g-~e~~n~~~~~~g~~~~~~~~~~~H~~lg~~l~l~d-~~~~ 151 (421)
T 1ses_A 74 KALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG-GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRIS 151 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCBC-TTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-CccccEEEEEeCCCCccCCCCCCHHHHHHHcCccc-cccc
Confidence 0 01 1899999999999 9999999999999874 68899999999999999 9999
Q ss_pred cccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCC
Q psy10034 132 IVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDE 211 (399)
Q Consensus 132 k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~ 211 (399)
+++|+|+|+|+|.|++|+++|++|+++.+.++||++|.+|.|++.++|.+||||++|.++||++.+
T Consensus 152 ~~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d-------------- 217 (421)
T 1ses_A 152 QVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE-------------- 217 (421)
T ss_dssp HHHCSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTT--------------
T ss_pred cccCCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc------------------------------------
Q psy10034 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------------------------------ 255 (399)
Q Consensus 212 ~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------------------------------ 255 (399)
++++|+||+|++++++|++++++|++||++|+++|+|||+|+|
T Consensus 218 -~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~ 296 (421)
T 1ses_A 218 -TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQ 296 (421)
T ss_dssp -SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHH
T ss_pred -CeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHH
Confidence 3799999999999999999999999999999999999999983
Q ss_pred -----------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeE
Q psy10034 256 -----------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEF 324 (399)
Q Consensus 256 -----------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~ 324 (399)
+||||||+|.+++++||++++++||+|+|+|++++|+|++|||||+||||+|++|+|++. ++++.+
T Consensus 297 e~~~~~~~il~~LGL~~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqarr~~i~y~~~---~~~~~~ 373 (421)
T 1ses_A 297 ELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDP---EGRVRY 373 (421)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECT---TSCEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEecCccCCchhhhcccHhheechhccchheeeccccchhhhhhhcCEeECC---CCCEEE
Confidence 899999999999999999999999999999999999999999999999999999999976 467899
Q ss_pred EEcccccccchHHHHHHHHHhcCCCCc-eecCcccccccCCc
Q psy10034 325 VHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFVPAV 365 (399)
Q Consensus 325 vHtlngt~~ai~R~i~allE~~q~~~g-i~iP~~L~py~~~~ 365 (399)
|||+||||+|++|+|+|||||||+++| |+||++|+||| |.
T Consensus 374 vhtlngs~lav~R~l~allE~~~~~dG~i~iP~~L~Py~-g~ 414 (421)
T 1ses_A 374 AYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM-GK 414 (421)
T ss_dssp CEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH-SS
T ss_pred EEecCCccchHHHHHHHHHHhCCCCCCCEecChhcCCcc-Cc
Confidence 999999999999999999999999999 99999999999 76
No 7
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=3.3e-88 Score=690.59 Aligned_cols=342 Identities=35% Similarity=0.581 Sum_probs=321.9
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCCC-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC---
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKN-VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDS--- 77 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~-~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k~~~~~~~~--- 77 (399)
||||++||+ |||.|++++++||.+ .+++|+|+++|++||+++.++++|+++||++||+|+++++++++..+.
T Consensus 1 mld~~~~r~----~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~ 76 (425)
T 2dq3_A 1 MIDINLIRE----KPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNR 76 (425)
T ss_dssp CCCHHHHHH----CHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTH
T ss_pred CCCHHHHHh----CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHH
Confidence 999999999 999999999999987 777999999999999999999999999999999999988776554321
Q ss_pred -------------------CC------CCCCCCCCCCCCCCCcCCCceeEeecCCcc--CccCCHHHHHHHcCCcccccc
Q psy10034 78 -------------------ST------LPGNHLHPSVPVSNNEDENGIVRTKGDTEV--RKKYSHVDLITMIDGVDSEAG 130 (399)
Q Consensus 78 -------------------~~------l~PN~~~~~vP~g~~e~~n~~~~~~g~~~~--~~~~dH~el~~~l~l~d~~~~ 130 (399)
++ -|||++|++||+|.+|++|+++++||+++. |+++||++||+++|||||+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g~~e~~n~~~~~~g~~~~~~f~~~~H~~l~~~l~l~d~~~~ 156 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRG 156 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCccCcEEEEEeCCCCCCCCCcccHHHHHhhCCeEEeccc
Confidence 00 189999999999999999999999999874 678999999999999999999
Q ss_pred ccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCC
Q psy10034 131 AIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKD 210 (399)
Q Consensus 131 ~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~ 210 (399)
++++|+|+|+|+|.|++|+++|++|+++.+.++||++|.+|.|++.++|.+||||++|.++||++.+
T Consensus 157 ~~~~g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~~------------- 223 (425)
T 2dq3_A 157 AKLSGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCER------------- 223 (425)
T ss_dssp HHHHCSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTT-------------
T ss_pred ccccCCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEecC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred CCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-----------------------------------
Q psy10034 211 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL----------------------------------- 255 (399)
Q Consensus 211 ~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g----------------------------------- 255 (399)
+++||+||+|++++.+|++++++|++||+||+++|+|||+|++
T Consensus 224 --~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e 301 (425)
T 2dq3_A 224 --DNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEK 301 (425)
T ss_dssp --TCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHH
T ss_pred --CeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999983
Q ss_pred ----------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEE
Q psy10034 256 ----------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFV 325 (399)
Q Consensus 256 ----------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~v 325 (399)
.|||||+++.+++|++|++++++||+|+|+|++++|+|++|||||+||||+|++|+|++.+ .++..+|
T Consensus 302 ~i~~~~~il~~LGL~~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~--~~k~~~v 379 (425)
T 2dq3_A 302 LVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSK--TGKNRFV 379 (425)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTT--TCSEEEC
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccCcccCCeEEECCC--CCeeEEE
Confidence 8999999999999999999999999999999999999999999999999999999999763 2566799
Q ss_pred EcccccccchHHHHHHHHHhcCCCCc-eecCcccccccCCc
Q psy10034 326 HMLNATACATTRVICAILETHQTETG-VRIPDCLRKFVPAV 365 (399)
Q Consensus 326 Htlngt~~ai~R~i~allE~~q~~~g-i~iP~~L~py~~~~ 365 (399)
||+||||||++|+|+|||||||+++| |+||+||+|||| .
T Consensus 380 Htl~Gs~~av~R~i~allE~~~~~~G~i~iP~~L~P~~~-~ 419 (425)
T 2dq3_A 380 HTLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYVG-T 419 (425)
T ss_dssp EEEEEEEEEHHHHHHHHHHHTBCTTSCEECCTTTHHHHS-C
T ss_pred EEEeccccHHHHHHHHHHHhCCCCCCCEecCccccCccC-c
Confidence 99999999999999999999999999 999999999998 5
No 8
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=3.4e-81 Score=652.97 Aligned_cols=265 Identities=28% Similarity=0.529 Sum_probs=255.9
Q ss_pred CCCCCCCCCCCCCCcCCCceeEeecCCcc--CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHH
Q psy10034 81 PGNHLHPSVPVSNNEDENGIVRTKGDTEV--RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALS 158 (399)
Q Consensus 81 ~PN~~~~~vP~g~~e~~n~~~~~~g~~~~--~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d 158 (399)
|||++||+||+| ||++|+++++||+++. |+++||++||+++|+|| +++++++|+|||||+|.|++|+++|++|+++
T Consensus 210 ipN~~~~~vp~g-~e~~n~~~~~~g~~~~~~~~~~dH~~lg~~l~l~d-~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~ 287 (536)
T 3err_A 210 VPLPPWPGAPVG-GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMD 287 (536)
T ss_dssp CCCCCCTTSCCS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCC-CCCCCeEEEEeCCCCCCCCCCCCHHHHHHHcCCcc-cccccCCCCceeEEcCHHHHHHHHHHHHHHH
Confidence 899999999999 9999999999999884 68999999999999999 9999999999999999999999999999999
Q ss_pred HHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCC
Q psy10034 159 KWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEAS 238 (399)
Q Consensus 159 ~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~ 238 (399)
++.++||++|.+|.|++.++|++||||++|+++||++.+ +++||+||+|++++++|+++++||++
T Consensus 288 ~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~---------------~~~~L~PT~E~~~~~l~~~~i~s~~~ 352 (536)
T 3err_A 288 FMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE---------------TDLYLTGTAEVVLNALHSGEILPYEA 352 (536)
T ss_dssp HHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT---------------TTEEECSSTHHHHHHHTTTCEEEGGG
T ss_pred HHHHcCCEEEeccccccHHHHHhcCCcccChhhceEecC---------------CCEEEccCCcHHHHHHHhcccccHhh
Confidence 999999999999999999999999999999999999964 47999999999999999999999999
Q ss_pred cCceeeeeccccccCCc-----------------------------------------------cCCccEEEEEeccCCC
Q psy10034 239 LPIRYLGVSTCFRQEDL-----------------------------------------------TKSIAYRVVNIVSGAL 271 (399)
Q Consensus 239 LPlk~~~~s~~fR~E~g-----------------------------------------------~LgLpyrvv~~~sgdl 271 (399)
||++|+++|+|||+|+| +||||||+|.+|+|||
T Consensus 353 LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv~~~tgdl 432 (536)
T 3err_A 353 LPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDM 432 (536)
T ss_dssp CSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTS
T ss_pred CCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCccc
Confidence 99999999999999983 8999999999999999
Q ss_pred CccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCc
Q psy10034 272 NHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETG 351 (399)
Q Consensus 272 g~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~g 351 (399)
|++++++||||+|+|++++|+||+|||||+||||||++|+|++. +++..||||+||||+|++|+|+|||||||++||
T Consensus 433 g~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~dyqarr~~iry~~~---~~k~~~vhtlngs~~a~~R~l~ailen~q~~dg 509 (536)
T 3err_A 433 GPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDP---EGRVRYAYTLNNTALATPRILAMLLENHQLQDG 509 (536)
T ss_dssp CTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEECT---TSCEEECEEEEEEEEEETHHHHHHHHHHBCTTS
T ss_pred CCChhheeeeeEecCCCCCeEEEEEecCccChhhcccCeEEECC---CCCeEeeeEEeccchhHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999976 467899999999999999999999999999999
Q ss_pred -eecCcccccccCCc
Q psy10034 352 -VRIPDCLRKFVPAV 365 (399)
Q Consensus 352 -i~iP~~L~py~~~~ 365 (399)
|+||++|+||||..
T Consensus 510 ~i~iP~~L~py~g~~ 524 (536)
T 3err_A 510 RVRVPQALIPYMGKE 524 (536)
T ss_dssp CEECCGGGHHHHTSS
T ss_pred cEeCChhhCCccCCc
Confidence 99999999999655
No 9
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=2.7e-51 Score=426.60 Aligned_cols=259 Identities=15% Similarity=0.198 Sum_probs=215.6
Q ss_pred CCCCCCCCCCCCCCCcCCCceeEeecCCc-cCccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHH
Q psy10034 80 LPGNHLHPSVPVSNNEDENGIVRTKGDTE-VRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALS 158 (399)
Q Consensus 80 l~PN~~~~~vP~g~~e~~n~~~~~~g~~~-~~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d 158 (399)
.|||++|++||+|.||+ +.||+++ +|+ .+|.+|++++|++|++.+ .+|+|+|+|.|++++++|++++++
T Consensus 14 ~~pn~~~~~vp~g~~~~-----~~~~~~~~~f~-~~~~~l~~~~glid~~~~----~~G~~~~~P~g~~l~~~i~~~~~~ 83 (501)
T 1nj1_A 14 LVPRGSHMQKPIKKDPN-----RYHGEKMTEFS-EWFHNILEEAEIIDQRYP----VKGMHVWMPHGFMIRKNTLKILRR 83 (501)
T ss_dssp ------------------------------CHH-HHHHHHHHHTTCEECCCS----STTCCEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCCCCCC-----ccccCCCCCcc-HhHHHHHHHCCCccccCC----CCceEEECccHHHHHHHHHHHHHH
Confidence 48999999999998764 8899876 354 899999999999999654 369999999999999999999999
Q ss_pred HHHHcCCeEecCCccccHHHHHH-hcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCC
Q psy10034 159 KWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEA 237 (399)
Q Consensus 159 ~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~ 237 (399)
.+.+ ||++|.+|.|++.++|.+ +||++.|.++||++.+.+.. ..+++++|+||+|++++.+|++++.||+
T Consensus 84 ~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~--------~~~~~l~LrPt~e~~i~~~~~~~~~s~~ 154 (501)
T 1nj1_A 84 ILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLS--------KLQRKLALRPTSETVMYPMFALWVRSHT 154 (501)
T ss_dssp HHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTE--------EEEEEEEECSSSHHHHHHHHHHHCCBTT
T ss_pred HHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCc--------ccCCeeEEccCCCHHHHHHHHhhhcccc
Confidence 9988 999999999999999998 99999999999999875210 0035799999999999999999999999
Q ss_pred CcCceeeeeccccccCCc-------------------------------------------cCCccEEEEEeccCCCCcc
Q psy10034 238 SLPIRYLGVSTCFRQEDL-------------------------------------------TKSIAYRVVNIVSGALNHA 274 (399)
Q Consensus 238 ~LPlk~~~~s~~fR~E~g-------------------------------------------~LgLpyrvv~~~sgdlg~~ 274 (399)
+||++++++++|||+|+. .|||||+++..+.++++++
T Consensus 155 ~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~~~~~~~e~~~~ 234 (501)
T 1nj1_A 155 DLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPG 234 (501)
T ss_dssp TCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTTTSCTT
T ss_pred cCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchhhcCC
Confidence 999999999999999975 8999999999999999999
Q ss_pred ccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceec
Q psy10034 275 AAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRI 354 (399)
Q Consensus 275 a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~i 354 (399)
+..+||||+|+|+ +.+.|+++|++|+|+||++++++|.+. +++..++|+ +|+|++ +|+|+||+|+|++++|+.|
T Consensus 235 a~~~~die~~l~~-g~~~ei~t~~~lg~~~a~~~~~ry~~~---~g~~~~~h~-~g~Gig-eRli~aliE~~~d~~Gl~~ 308 (501)
T 1nj1_A 235 SEYTVAFDTLMPD-GKTLQIGTVHNLGQTFARTFEIKFETP---EGDHEYVHQ-TCYGLS-DRVIASVIAIHGDESGLCL 308 (501)
T ss_dssp CSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHHTCEEECT---TSCEEECEE-EEEEEC-THHHHHHHHHTCCSSSEEC
T ss_pred cccceEEEEEcCC-CCEEEEEEEEeccccchhhcCeEEECC---CCCEEeeee-ccccHH-HHHHHHHHHHcCcccCccC
Confidence 9999999999997 789999999999999999999999975 466789999 799999 9999999999999999999
Q ss_pred CcccccccC
Q psy10034 355 PDCLRKFVP 363 (399)
Q Consensus 355 P~~L~py~~ 363 (399)
|++|+||+.
T Consensus 309 P~~laP~qV 317 (501)
T 1nj1_A 309 PPDVAAHQV 317 (501)
T ss_dssp CTTTSSCSE
T ss_pred CccccCceE
Confidence 999999986
No 10
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=100.00 E-value=2.2e-51 Score=402.95 Aligned_cols=216 Identities=18% Similarity=0.140 Sum_probs=188.7
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCcc------------CC
Q psy10034 136 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEK------------VG 203 (399)
Q Consensus 136 ~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~------------~~ 203 (399)
+|||++.+.|++|+++|++|+++ +.+.||++|.+|.|++.++|++||||++|.++||.+..-... ..
T Consensus 54 ~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~ 132 (346)
T 3mf2_A 54 DGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAG 132 (346)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTT
T ss_pred CceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccc
Confidence 79999999999999999999999 889999999999999999999999999999999998531100 00
Q ss_pred CCCCCCCCCCCeeeeCCCChHHHHHHhcC-cCCCCCcCceeeeeccccccCCc---------------------------
Q psy10034 204 DSAPEKDELDDKYLIATSEQPICAVHRDS-WLPEASLPIRYLGVSTCFRQEDL--------------------------- 255 (399)
Q Consensus 204 ~~~~~~~~~~~~~L~pTsE~~~~~l~~~~-i~sy~~LPlk~~~~s~~fR~E~g--------------------------- 255 (399)
.+-...+.+.+|||+||+|+|++++|+++ +++ +.|++|+++|+|||+|++
T Consensus 133 ~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~ 210 (346)
T 3mf2_A 133 GDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFR 210 (346)
T ss_dssp SCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHH
T ss_pred cccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHH
Confidence 00001111347999999999999999987 777 449999999999999987
Q ss_pred ------------cCCccEEEEEeccCCCCcc------------ccceeceeeecCCCcccceEEEecCcchhhhhccccE
Q psy10034 256 ------------TKSIAYRVVNIVSGALNHA------------AAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVR 311 (399)
Q Consensus 256 ------------~LgLpyrvv~~~sgdlg~~------------a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~ 311 (399)
.||||||++.+ +|+|++ +++|||+|||+|++++|+||+|||||+||||||++||
T Consensus 211 e~l~~~ae~il~~LgLpyrv~~~--~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~~dfqarR~~Ir 288 (346)
T 3mf2_A 211 ERWMVRAQAIARDLGLTFRVDYA--SDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQ 288 (346)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEC--CCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHHHHHHTCB
T ss_pred HHHHHHHHHHHHHCCCCEEEEEc--cCCCcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecccchhhhhhcce
Confidence 89999999876 789987 3689999999999999999999999999999999999
Q ss_pred EeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCc
Q psy10034 312 YGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAV 365 (399)
Q Consensus 312 y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~ 365 (399)
|++ ..+|||+ |||+|++|+++|||||||++ -..||++|++|+++.
T Consensus 289 ~~~-------~~~vHT~-~sglav~R~l~AiLen~G~d-~~~wP~~lr~~l~~~ 333 (346)
T 3mf2_A 289 DAN-------GEPAHTG-CVAFGMDRLAVAMFHTHGTD-LSAWPAKVRDILGLQ 333 (346)
T ss_dssp CTT-------SSBCEEE-EEEEEHHHHHHHHHHHHCSC-GGGSCHHHHHHTTSC
T ss_pred eCC-------CCeEEEc-ccchHHHHHHHHHHHHcCCC-ccccCHHHHHHhCCC
Confidence 963 2599997 99999999999999999986 479999999999987
No 11
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00 E-value=6.2e-47 Score=392.84 Aligned_cols=243 Identities=15% Similarity=0.120 Sum_probs=204.3
Q ss_pred CCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHH-HHHcCCeEecCCccccHHHHHHhcCccccccc
Q psy10034 113 YSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSK-WIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEE 191 (399)
Q Consensus 113 ~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~-~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~ 191 (399)
....+++.+.|+|+ +.+|+|+|+|+|.|++|+++|++|+++. +.+.||++|.+|.|++.++|.+||||+.|.++
T Consensus 203 ~~~~~ll~raG~i~-----~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~de 277 (522)
T 2cja_A 203 EDPTQAMMKEGWLK-----RGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPE 277 (522)
T ss_dssp SCHHHHHHHTTSEE-----ECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGG
T ss_pred hHHHHHHHHCCCee-----eeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccc
Confidence 45568999999997 3578999999999999999999999985 88999999999999999999999999999999
Q ss_pred ceEEeccC--c---------------cCCCC-CCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeee-ecccccc
Q psy10034 192 LYKVIGKG--E---------------KVGDS-APEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLG-VSTCFRQ 252 (399)
Q Consensus 192 ~f~i~~~~--~---------------~~~~~-~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~-~s~~fR~ 252 (399)
||.+...+ . +.+.. -.+...+.++||+||+|++++.+|+++++||++||++++| +|+|||+
T Consensus 278 my~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~ 357 (522)
T 2cja_A 278 IYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRY 357 (522)
T ss_dssp CCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECC
T ss_pred eeeeecCCccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeC
Confidence 99995211 0 00000 0000014589999999999999999999999999999999 9999999
Q ss_pred CCc------------------------------------------cCCccEEEEEeccCCCCc------------cccce
Q psy10034 253 EDL------------------------------------------TKSIAYRVVNIVSGALNH------------AAAKK 278 (399)
Q Consensus 253 E~g------------------------------------------~LgLpyrvv~~~sgdlg~------------~a~~~ 278 (399)
|++ .|||| ++. + ++|.++ +++.+
T Consensus 358 Epgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~v~-~-~~D~f~~a~~G~~G~~q~~a~~k 434 (522)
T 2cja_A 358 ESGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE-WRK-A-RVTPWFMAQEGLLGLAEENTVGT 434 (522)
T ss_dssp CSSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC-EEE-E-EC----------------CCCEE
T ss_pred CCCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC-EEe-e-ccCCccccccccccchhccccce
Confidence 976 89999 543 3 345444 36899
Q ss_pred eceeeecC---CCcccceEEEecCcchhhhhccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecC
Q psy10034 279 LDLEAWFP---GSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIP 355 (399)
Q Consensus 279 ydiE~w~P---~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP 355 (399)
||+|+|+| +++.|.+++|||+|+||||+||+|+|.+ + .++|| +|+|+|++|+|+|||||||+++| .||
T Consensus 435 ~DiE~~~P~~~g~~~~~eisS~s~~~d~qarr~~Ir~~~-----~--~~vht-~~~Glgv~Rli~AlLE~~~~~~~-~wP 505 (522)
T 2cja_A 435 TDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQS-----G--DELWS-GCSGVGLERWAAVFLAQKGLDPA-NWP 505 (522)
T ss_dssp EEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEETT-----C--CCEEE-EEEEEEHHHHHHHHHHHHCSCGG-GSC
T ss_pred EEEEEecccccCCCcEEEEeeechhhhhcccccceEcCC-----C--CEEEE-eccCcHHHHHHHHHHHHcCCCCC-cCc
Confidence 99999999 6999999999999999999999999863 2 38999 69999999999999999999776 999
Q ss_pred cccccccCCcccCCcccccCc
Q psy10034 356 DCLRKFVPAVYVNEAGEIPFV 376 (399)
Q Consensus 356 ~~L~py~~~~~~~~~~~~~~~ 376 (399)
++|+|||+|.. + +|||+
T Consensus 506 ~~lr~ym~g~~-~---~~~~~ 522 (522)
T 2cja_A 506 EEFRNRVGEMP-K---GIRFL 522 (522)
T ss_dssp HHHHHHHCSCC-C---CCCCC
T ss_pred hHHHHhhCCCC-c---cCCCC
Confidence 99999999974 5 88874
No 12
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=2.4e-45 Score=381.19 Aligned_cols=249 Identities=14% Similarity=0.136 Sum_probs=218.0
Q ss_pred EeecCCc--cCccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHH
Q psy10034 102 RTKGDTE--VRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVM 179 (399)
Q Consensus 102 ~~~g~~~--~~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~ 179 (399)
..|++++ +|+.-.| +|+.++||+|+ +. +++|+|+|+|.|++++++|++|+++.+.+.||++|.+|.|++.++|
T Consensus 14 ~~~~~~~~~~f~~wy~-~l~~~aglid~-r~---~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~ 88 (518)
T 3ial_A 14 TFSLTKTRDTFADWFD-AIMDAAELVDR-RY---PVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFL 88 (518)
T ss_dssp CCCCCCCTTTHHHHHH-HHHHHTTCEET-TS---SSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHH
T ss_pred EEecCcccccccHHHH-HHHHHCCCccc-CC---CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHH
Confidence 4566666 3544445 69999999998 32 5689999999999999999999999999999999999999999999
Q ss_pred H-HhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---
Q psy10034 180 Q-EVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--- 255 (399)
Q Consensus 180 ~-~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--- 255 (399)
. .+|||+.|.++||.+.+.+.. + .+++++|+||+|++++.+|++++.||++||++++++++|||+|++
T Consensus 89 ~k~sgh~~~f~~emy~v~d~g~~-------~-~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~ 160 (518)
T 3ial_A 89 KKESDHIKGFEAECFWVEKGGLQ-------P-LEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTK 160 (518)
T ss_dssp TSSHHHHHHHGGGCEEEEEETTE-------E-EEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCB
T ss_pred HhhcCCcccccccEEEEecCCCc-------c-cCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCC
Confidence 7 599999999999999875310 0 035799999999999999999999999999999999999999964
Q ss_pred ----------------------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEE
Q psy10034 256 ----------------------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELV 295 (399)
Q Consensus 256 ----------------------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~ 295 (399)
.|||||+++..+++|++++|.++||||+|+|+ +++.|++
T Consensus 161 GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~~~~~~e~~~gA~yt~~iE~~~pd-gr~ie~g 239 (518)
T 3ial_A 161 PLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPC-GRVLQTA 239 (518)
T ss_dssp TTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEEECGGGCCTTCSEEEEEEEECTT-SCEEEEE
T ss_pred CCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeeecChhhccCCCccceEEEEEcCC-CCEEEEe
Confidence 79999999999999999999999999999997 7899999
Q ss_pred EecCcchhhhhccccEEeccCCCCCceeEEEc-ccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCCccccc
Q psy10034 296 SCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHM-LNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIP 374 (399)
Q Consensus 296 s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~vHt-lngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~ 374 (399)
+|+++++++|+||+|+|.++ +++..++|+ ++|+ .+|+|+||||+|++++|++||+||+||+.- +||
T Consensus 240 t~~~Lg~~~s~rf~i~y~d~---~g~~~~~h~~~~G~---~~R~iaaliE~~~de~Gl~lP~~LAP~qV~-------IiP 306 (518)
T 3ial_A 240 GIHNLGQRFSSTFDILYANK---ANESVHPYLTCAGI---STRVLACALSIHGDSGGLVLPPLIAPIHVV-------IIP 306 (518)
T ss_dssp EEEEEETHHHHHTTCCEECT---TCCEECCEEEEEEE---ETHHHHHHHHHHCBTTBCCCCGGGCSCSEE-------EEE
T ss_pred ceecccchhhhhcCcEEECC---CCCEeeeEEeccch---HHHHHHHHHHHhCCCCccccCCccceEEEE-------EEE
Confidence 99878777899999999986 567788996 5565 399999999999999999999999999973 566
Q ss_pred Ccc
Q psy10034 375 FVK 377 (399)
Q Consensus 375 ~~~ 377 (399)
..+
T Consensus 307 i~~ 309 (518)
T 3ial_A 307 IGC 309 (518)
T ss_dssp ESC
T ss_pred eec
Confidence 654
No 13
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=367.52 Aligned_cols=240 Identities=16% Similarity=0.138 Sum_probs=211.8
Q ss_pred HHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHH-hcCcccccccce
Q psy10034 115 HVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELY 193 (399)
Q Consensus 115 H~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~f~~~~f 193 (399)
+.+|++++||+|+ .+++|+|+|+|.|++|+++|++|+++.+.+.||++|.+|.|++.++|.+ +|||++|.++||
T Consensus 35 y~~l~~~~~lid~-----~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy 109 (519)
T 4hvc_A 35 YSQVITKSEMIEY-----HDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVA 109 (519)
T ss_dssp HHHHHHHTTCEEE-----CSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCE
T ss_pred HHHHHHHCCCeEe-----cCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccce
Confidence 4499999999998 2567899999999999999999999999999999999999999999996 899999999999
Q ss_pred EEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc------------------
Q psy10034 194 KVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------------ 255 (399)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------------ 255 (399)
.+.+.+.. ++ +++++|+||+|++++.+|+++++||++||+||+++++|||+|++
T Consensus 110 ~~~d~g~~-------~l-~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~ 181 (519)
T 4hvc_A 110 WVTRSGKT-------EL-AEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHS 181 (519)
T ss_dssp EEEEETTE-------EE-EEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEE
T ss_pred EEeccCCc-------cc-ccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEE
Confidence 99865210 00 13699999999999999999999999999999999999999954
Q ss_pred ------------------------cC-CccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhcccc
Q psy10034 256 ------------------------TK-SIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLV 310 (399)
Q Consensus 256 ------------------------~L-gLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i 310 (399)
.| +|||+++..+.++.++.+..+||+|+|+|+.+++.++++|++|++++|+||+|
T Consensus 182 ~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s~~~~i 261 (519)
T 4hvc_A 182 AFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEI 261 (519)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTC
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecccccccchhhhhcCc
Confidence 65 99999998888888888889999999999999999999999999999999999
Q ss_pred EEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCCcccccCcc
Q psy10034 311 RYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVK 377 (399)
Q Consensus 311 ~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~~~~ 377 (399)
+|.+.+ .+++..+||+ ++.|++ +|+|++|+|+|++++|+.||.+|+||+.- +||...
T Consensus 262 ~y~d~~-~~g~~~~vh~-~~~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~qV~-------Iipi~~ 318 (519)
T 4hvc_A 262 VFEDPK-IPGEKQFAYQ-NSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVV-------IIPCGI 318 (519)
T ss_dssp EEECTT-STTCEEECEE-EEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEE-------EEECCC
T ss_pred EEeccc-cCCCEEEEEE-ccccHH-HHHHHHHHHHhCccccccccccCCCeEEE-------EEEecC
Confidence 999852 1356789998 244444 99999999999999999999999999873 567654
No 14
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=3.9e-40 Score=351.93 Aligned_cols=242 Identities=14% Similarity=0.199 Sum_probs=204.0
Q ss_pred CcCCCceeEeecCCc--------------cCccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHH
Q psy10034 94 NEDENGIVRTKGDTE--------------VRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSK 159 (399)
Q Consensus 94 ~e~~n~~~~~~g~~~--------------~~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~ 159 (399)
|+++..+.|.||..- ..+.+||++||+++++++|++ .|+|+|+|+|.|+++.++|++|+++.
T Consensus 209 ~~~~~~l~r~~g~~~~~~~~l~~~~~~~eea~~rdH~~lg~~l~l~~~~~----~~~G~~~~lP~g~~l~~~l~~~~r~~ 284 (642)
T 1qf6_A 209 DSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSK 284 (642)
T ss_dssp CTTSCEEEEEEEEECSSHHHHHHHHHHHHHHHTTCHHHHHHHTTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHH
T ss_pred ccCCceeEeeeccccCchhHHhhhhhhhhccccCCHHHHHHhcCcccccc----CCCCcEEECCcHHHHHHHHHHHHHHH
Confidence 344555668999751 135799999999999999986 37899999999999999999999999
Q ss_pred HHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCc
Q psy10034 160 WIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASL 239 (399)
Q Consensus 160 ~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~L 239 (399)
+.++||++|.+|.|.+.++|..||||+.|.++||. .+.+ +++++|+||+|++++.+|++.+.||++|
T Consensus 285 ~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~~------------~~~~~LrP~~~~~~~~~~~~~~~syr~L 351 (642)
T 1qf6_A 285 LKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSE------------NREYCIKPMNCPGHVQIFNQGLKSYRDL 351 (642)
T ss_dssp HHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEET------------TEEEEECSSSHHHHHHHHTTSCEEGGGC
T ss_pred HHHcCCEEEECCcCccHHHHhhcCcccccccccee-eecC------------CceEEecCCCCHHHHHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999 5542 4679999999999999999999999999
Q ss_pred CceeeeeccccccCCc------------------------------------------cCCc-cEEEEEeccCCCCcccc
Q psy10034 240 PIRYLGVSTCFRQEDL------------------------------------------TKSI-AYRVVNIVSGALNHAAA 276 (399)
Q Consensus 240 Plk~~~~s~~fR~E~g------------------------------------------~LgL-pyrvv~~~sgdlg~~a~ 276 (399)
|+|+|++|+|||+|.+ .||| +|++ .+++++ +.
T Consensus 352 Plr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~lGl~~~~v-~l~~~~----e~ 426 (642)
T 1qf6_A 352 PLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVV-KLSTRP----EK 426 (642)
T ss_dssp SEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCCCCEE-EEECCC----SS
T ss_pred CeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCceEE-EEecCc----cc
Confidence 9999999999999985 8999 8988 567764 45
Q ss_pred ceeceeeecCCCcccceEEEec------------------------------Ccc----hhh-hhccccEEeccCCCCCc
Q psy10034 277 KKLDLEAWFPGSGAFRELVSCS------------------------------NCL----DYQ-SRRLLVRYGQTKKMNEK 321 (399)
Q Consensus 277 ~~ydiE~w~P~~~~~~Ev~s~S------------------------------nc~----Dyq-a~rl~i~y~~~~~~~~~ 321 (399)
+.+|.|+|.++++.+.++.+|+ +|+ ||| ++|++++|.+.++....
T Consensus 427 ~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~gti~~df~l~~r~~~~y~~~~g~~~~ 506 (642)
T 1qf6_A 427 RIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKV 506 (642)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTTSCEEC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEeeeEEEeccCCccCCCEEEecCCCCcC
Confidence 6678888876654443332222 455 888 99999999876443345
Q ss_pred eeEEE-cccccccchHHHHHHHHHhcCCCCceecCcccccccCC
Q psy10034 322 IEFVH-MLNATACATTRVICAILETHQTETGVRIPDCLRKFVPA 364 (399)
Q Consensus 322 ~~~vH-tlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~ 364 (399)
|.++| +++|+ ++|+|++|+|+|++ .||.||+|++..
T Consensus 507 P~~~hrai~G~---ieR~i~~liE~~~~----~~P~~laP~qv~ 543 (642)
T 1qf6_A 507 PVMIHRAILGS---MERFIGILTEEFAG----FFPTWLAPVQVV 543 (642)
T ss_dssp CEEEEEEEEEE---HHHHHHHHHHHHTT----CCCTTTCSSCEE
T ss_pred cEEEEeccCCC---HHHHHHHHHHHhcC----CCCcccCCceEE
Confidence 67899 67775 99999999999998 899999999863
No 15
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=4.7e-37 Score=316.36 Aligned_cols=240 Identities=14% Similarity=0.227 Sum_probs=191.3
Q ss_pred ccCccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHH-HHcCCeEecCCccccHHHHHHhcCcc
Q psy10034 108 EVRKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKW-IEKGYTPLYTPFFMRKEVMQEVAQLA 186 (399)
Q Consensus 108 ~~~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~-~~~Gy~ev~~P~l~~~~l~~~sg~~~ 186 (399)
+.|+++||++||++++||+|.. .|+|+|+|+|.|++++++|++|+++.+ .++||++|.+|.|++.++|++||||+
T Consensus 30 ~~~~~rdH~~lg~~l~l~~~~~----~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~ 105 (460)
T 3uh0_A 30 SATPATMTSMVSQRQDLFMTDP----LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWE 105 (460)
T ss_dssp CCCHHHHHHHHHHHHTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTT
T ss_pred CCCCCCCHHHHHHhCCCceecc----CCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCcc
Confidence 3578999999999999999986 478999999999999999999999999 99999999999999999999999999
Q ss_pred cccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-----------
Q psy10034 187 QFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL----------- 255 (399)
Q Consensus 187 ~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g----------- 255 (399)
.|.++||.+.+.+. .+++++|+||+|++++.+|+++++||++||+||+++++|||+|.+
T Consensus 106 ~~~~emy~~~d~~~----------~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~Re 175 (460)
T 3uh0_A 106 NYADDMFKVETTDE----------EKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRK 175 (460)
T ss_dssp TSGGGSCEECC----------------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSE
T ss_pred ccccceEEEecCCC----------CCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeee
Confidence 99999999986421 146899999999999999999999999999999999999999975
Q ss_pred --------------------------------cCCcc---------EEEEEeccCC---CCcccc---------------
Q psy10034 256 --------------------------------TKSIA---------YRVVNIVSGA---LNHAAA--------------- 276 (399)
Q Consensus 256 --------------------------------~LgLp---------yrvv~~~sgd---lg~~a~--------------- 276 (399)
.|||+ |++. +.++. +|..+.
T Consensus 176 F~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~-l~t~pe~~~G~~~~w~~ae~~L~~~l~~~ 254 (460)
T 3uh0_A 176 FHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFIN-FSTRPDHFIGDLKVWNHAEQVLKEILEES 254 (460)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEE-EECCCSSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccceEEE-EccCCcccCCCHHHHHHHHHHHHHHHHHh
Confidence 78998 6664 45543 443211
Q ss_pred ---------------ceeceeeecCCCcccceEEEecCcchhh-hhccccEEeccCCCCCceeEEEcccccccchHHHHH
Q psy10034 277 ---------------KKLDLEAWFPGSGAFRELVSCSNCLDYQ-SRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVIC 340 (399)
Q Consensus 277 ---------------~~ydiE~w~P~~~~~~Ev~s~Snc~Dyq-a~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~ 340 (399)
.+.|+.+. .+.++.-+++++ +.||+ +.||+++|.+.++....|.++|+. +.| +++|+|+
T Consensus 255 g~~~~~~~g~gafygpkid~~~~-d~~gr~~q~~Ti--qld~~~~~rf~l~y~~~~g~~~~P~~ih~~-~~G-g~eRli~ 329 (460)
T 3uh0_A 255 GKPWKLNPGDGAFYGPKLDIMVT-DHLRKTHQVATI--QLDFQLPERFDLKFKDQDNSYKRPIMIHRA-TFG-SIERFMA 329 (460)
T ss_dssp TCCEEEETTCSCSSCCEEEEEEE-CTTSCEEEEEEE--EEESHHHHHTTCCEECTTSCEECCEEEEEE-EEE-EHHHHHH
T ss_pred CCCeeECCCccccccceEEEEEE-ccCCCeeeeccc--ccccccccccceEEECCCCCccCcEEEecC-cch-HHHHHHH
Confidence 13344332 233333333333 56774 899999999875444456799972 445 7999999
Q ss_pred HHHHhcCCCCceecCcccccccCCcccCCcccccCccC
Q psy10034 341 AILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT 378 (399)
Q Consensus 341 allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~~~~~ 378 (399)
+|+|+|.+ .||.||+|++.- +||....
T Consensus 330 ~Lie~~~g----~~P~~laP~qv~-------Vipi~~~ 356 (460)
T 3uh0_A 330 LLIDSNEG----RWPFWLNPYQAV-------IIPVNTK 356 (460)
T ss_dssp HHHHHHTT----CCCGGGCSCCEE-------EEESSTT
T ss_pred HHHHHcCC----CCCCCCCCceEE-------EEEecCC
Confidence 99999975 899999999873 5666543
No 16
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=6e-36 Score=308.28 Aligned_cols=234 Identities=17% Similarity=0.183 Sum_probs=208.4
Q ss_pred cCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHH-hcCcccccc
Q psy10034 112 KYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDE 190 (399)
Q Consensus 112 ~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~f~~ 190 (399)
...|.+|+.++||+++..+ .+|+|.|+|.|+++.++|++++++.+.+.||++|.+|.|.+.++|.. +||++.|.+
T Consensus 8 ~~~~~~l~~~~~li~~~~~----~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~ 83 (459)
T 1nj8_A 8 SEWYSDILEKAEIYDVRYP----IKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFED 83 (459)
T ss_dssp HHHHHHHHHHTSSCBCCST----TSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGG
T ss_pred cHhHHHHHHhCCCccccCC----CCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccch
Confidence 4579999999999998543 36899999999999999999999999999999999999999999985 999999999
Q ss_pred cceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---------------
Q psy10034 191 ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--------------- 255 (399)
Q Consensus 191 ~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--------------- 255 (399)
+||.+.+.+.. ..+++++|+||+|++++.+|++.+.||++||++++++++|||+|..
T Consensus 84 emy~~~d~g~~--------~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~ 155 (459)
T 1nj8_A 84 EVYWVTHGGKT--------QLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFK 155 (459)
T ss_dssp GCEEEEESSSS--------EEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEE
T ss_pred hhEEEeccCcc--------cCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccC
Confidence 99999875310 0135799999999999999999999999999999999999999964
Q ss_pred ----------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhc
Q psy10034 256 ----------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRR 307 (399)
Q Consensus 256 ----------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~r 307 (399)
.|||+|++...+..+.++.+..++|||+|+|. +...+++++.++++.+|++
T Consensus 156 d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~~~~~~~~~~ek~~ga~~~~~ie~~~~d-g~~~e~gt~~~lg~~~s~~ 234 (459)
T 1nj8_A 156 EAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPD-GRTMQIATVHNLGQNFSKT 234 (459)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEeecCchhhcCCcccceeEEEEcCC-CcEEEEEEEeecccccccc
Confidence 89999999888877888888889999999996 5667899998898888999
Q ss_pred cccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 308 LLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 308 l~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
++++|.+. +++..++|+ +|.|++ +|+|++|+|+|++++|+.||++|+|++.
T Consensus 235 ~~~~Y~~~---~G~~~~v~~-~~~Gig-eRli~alie~~~d~~gl~~P~~laP~qv 285 (459)
T 1nj8_A 235 FEIIFETP---TGDKDYAYQ-TCYGIS-DRVIASIIAIHGDEKGLILPPIVAPIQV 285 (459)
T ss_dssp TTCEEECT---TSSEEECEE-EEEEEC-THHHHHHHHHHCBTTBCCCCTTSCSSSE
T ss_pred cCeEEECC---CCCEeeeeE-eeccHH-HHHHHHHHHHhCCCceeEcCCcCCCCcE
Confidence 99999875 456678898 588888 9999999999999999999999999876
No 17
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=9e-36 Score=301.81 Aligned_cols=222 Identities=15% Similarity=0.210 Sum_probs=183.0
Q ss_pred CCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccc
Q psy10034 113 YSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL 192 (399)
Q Consensus 113 ~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~ 192 (399)
+||++||+++|||+|.. +++|+|.|+|.|+++.++|++++++.+.+.||++|.+|.|.+.++|..||||+.|.++|
T Consensus 1 ~dh~~l~~~~~l~~~~~----~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em 76 (401)
T 1evl_A 1 RDHRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAM 76 (401)
T ss_dssp CCHHHHHHHTTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGC
T ss_pred CChHHHHHhCCceEecC----CCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhh
Confidence 59999999999999976 47899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc-----------------
Q psy10034 193 YKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL----------------- 255 (399)
Q Consensus 193 f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g----------------- 255 (399)
|. .+.+ +++++|+||+|++++.+|++.+.+|++||+|+|++++|||+|.+
T Consensus 77 ~~-~d~~------------~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~ 143 (401)
T 1evl_A 77 FT-TSSE------------NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDA 143 (401)
T ss_dssp CE-EEET------------TEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEE
T ss_pred Ee-EecC------------CceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecce
Confidence 99 5542 46899999999999999999999999999999999999999983
Q ss_pred -------------------------cCCc-cEEEEEeccCCCCccccceeceeeecCCCcccce----------------
Q psy10034 256 -------------------------TKSI-AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRE---------------- 293 (399)
Q Consensus 256 -------------------------~LgL-pyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~E---------------- 293 (399)
+||| +|+++ +++++ +....|.|+|.++...+.+
T Consensus 144 ~~f~~~~~~~~e~~e~i~~~~~~~~~lgl~~~~~~-~~~~~----~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~ 218 (401)
T 1evl_A 144 HIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVK-LSTRP----EKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEG 218 (401)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHTTTCSCCEEE-EECCC----SSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCS
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEE-EecCC----cccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCc
Confidence 8999 89884 55554 3445566666644322211
Q ss_pred ----------EE-------Eec-Ccchhh-hhccccEEeccCCCCCceeEEE-cccccccchHHHHHHHHHhcCCCCcee
Q psy10034 294 ----------LV-------SCS-NCLDYQ-SRRLLVRYGQTKKMNEKIEFVH-MLNATACATTRVICAILETHQTETGVR 353 (399)
Q Consensus 294 ----------v~-------s~S-nc~Dyq-a~rl~i~y~~~~~~~~~~~~vH-tlngt~~ai~R~i~allE~~q~~~gi~ 353 (399)
+. .|. .+.||+ ++|++++|.+..+....|.++| +++|+ ++|+|++|+|+|++ .
T Consensus 219 ~~y~~~~d~~~~~~~G~~~~~gt~~~d~~l~~~~~~~y~~~~g~~~~p~~~~~~~~Gg---ieRli~~l~e~~~~----~ 291 (401)
T 1evl_A 219 AFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGS---MERFIGILTEEFAG----F 291 (401)
T ss_dssp BTTBCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEE---HHHHHHHHHHHHTT----C
T ss_pred cccCCCcCeEEEecCCCeEEeeeeeeccccccccCCEEECCCCCCcCcEEEEecCCCc---HHHHHHHHHHHhCC----c
Confidence 11 121 223888 9999999987643223356788 56663 99999999999997 8
Q ss_pred cCcccccccC
Q psy10034 354 IPDCLRKFVP 363 (399)
Q Consensus 354 iP~~L~py~~ 363 (399)
||.+++|+..
T Consensus 292 ~p~~~ap~~v 301 (401)
T 1evl_A 292 FPTWLAPVQV 301 (401)
T ss_dssp CCTTTCSSCE
T ss_pred CCCCCCCeEE
Confidence 9999999875
No 18
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=1.1e-34 Score=300.16 Aligned_cols=233 Identities=16% Similarity=0.115 Sum_probs=193.8
Q ss_pred cCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHH-hcCcccccc
Q psy10034 112 KYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDE 190 (399)
Q Consensus 112 ~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~f~~ 190 (399)
...|.+|+.+.|++++. +.+|+|.|+|.|+++.++|++++++.+.+.||++|.+|.|.+.++|.+ +||++.|.+
T Consensus 15 ~~~~~~l~~~~~li~~~-----~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~ 89 (477)
T 1hc7_A 15 SEWYLEVIQKAELADYG-----PVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSP 89 (477)
T ss_dssp HHHHHHHHHHTTSEEEC-----SSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCT
T ss_pred hHHHHHHHHHCCCeeec-----CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCccccccc
Confidence 34799999999999974 347899999999999999999999999999999999999999999988 999999999
Q ss_pred cceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc---------------
Q psy10034 191 ELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--------------- 255 (399)
Q Consensus 191 ~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--------------- 255 (399)
+||.+.+.+.. + .+++++|+||+|++++.+|++.+.||++||+++|++++|||+|.+
T Consensus 90 emy~~~d~g~~-------~-l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~ 161 (477)
T 1hc7_A 90 ELAVVTHAGGE-------E-LEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEG 161 (477)
T ss_dssp TCEEEEEESSS-------E-EEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEE
T ss_pred ceEEEECCCCc-------c-CCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccE
Confidence 99999876310 0 035799999999999999999999999999999999999999964
Q ss_pred ---------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhcc
Q psy10034 256 ---------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRL 308 (399)
Q Consensus 256 ---------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl 308 (399)
.|||||++...+..+..+.+..++++|+|+|.. +..+++++.+++...|.++
T Consensus 162 ~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~~~~~~~~~~e~~~g~~~~~~ie~~~~dg-r~~~~gt~~~lg~~~s~~~ 240 (477)
T 1hc7_A 162 HTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDG-KALQAGTSHYLGENFARAF 240 (477)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEEEEEEECTTS-CEEEEEEEEEEETHHHHHT
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChHHhcCCcccceEEEEEcCCC-cEEEEeeeEEccccccccc
Confidence 689999988777666666666789999999964 4447777666654459999
Q ss_pred ccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 309 LVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 309 ~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
+++|.+. +++..++|+ .|.|++ +|+|++|+|+|++++|+.||++|+|++.
T Consensus 241 g~~y~~~---~G~~~~~~~-~~~Gig-eRli~~lie~~~d~~gl~~P~~laP~qV 290 (477)
T 1hc7_A 241 DIKFQDR---DLQVKYVHT-TSWGLS-WRFIGAIIMTHGDDRGLVLPPRLAPIQV 290 (477)
T ss_dssp TCEEECT---TSCEEECEE-EEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSE
T ss_pred CeEEECC---CCCEEeeeE-eeccHH-HHHHHHHHHHhCccccccCCcccCCceE
Confidence 9999875 456678897 477777 9999999999999999999999999986
No 19
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=3.5e-35 Score=314.13 Aligned_cols=230 Identities=14% Similarity=0.187 Sum_probs=190.1
Q ss_pred ccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccc
Q psy10034 111 KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 190 (399)
Q Consensus 111 ~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~ 190 (399)
+.+||++||+++|+|+|.. .+|+|+|.|+|.|+++.++|++++++.+.+.||++|.||.|.+.++|..||||+.|.+
T Consensus 239 ~~rdhr~lg~~l~l~~~~~---~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~ 315 (645)
T 1nyr_A 239 KERDHRKIGKELELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQE 315 (645)
T ss_dssp HHTCHHHHHHHTTCEEEET---TTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTT
T ss_pred hhhhHHHHhhhcceEEecc---cCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCcccccc
Confidence 6789999999999999986 3589999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccCccCCCCCCCCCCC-CCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc--------------
Q psy10034 191 ELYKVIGKGEKVGDSAPEKDEL-DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL-------------- 255 (399)
Q Consensus 191 ~~f~i~~~~~~~~~~~~~~~~~-~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g-------------- 255 (399)
+||.+.+.+ + ++++|+||+|++++.+|++...||++||+|+|++++|||+|.+
T Consensus 316 ~mf~~~d~~------------~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q 383 (645)
T 1nyr_A 316 DMFPPMQLD------------ETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTL 383 (645)
T ss_dssp SSCCCEEET------------TTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEE
T ss_pred CcceeEecC------------CCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEE
Confidence 999986652 4 5799999999999999999999999999999999999999975
Q ss_pred ----------------------------cCCc-cEEEEEeccCCCCccccceeceeeecCCCcc----------------
Q psy10034 256 ----------------------------TKSI-AYRVVNIVSGALNHAAAKKLDLEAWFPGSGA---------------- 290 (399)
Q Consensus 256 ----------------------------~LgL-pyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~---------------- 290 (399)
.||| +|++ .+++.+++..+...++.|+|.++...
T Consensus 384 ~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~~~~~-~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~ 462 (645)
T 1nyr_A 384 NDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSF-RLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAI 462 (645)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCCEEE-EEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_pred ccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE-EEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecC
Confidence 8999 7888 56666665445555666777532110
Q ss_pred -----------------cceEEEec-Ccchhh-hhccccEEeccCCCCCceeEEEc-ccccccchHHHHHHHHHhcCCCC
Q psy10034 291 -----------------FRELVSCS-NCLDYQ-SRRLLVRYGQTKKMNEKIEFVHM-LNATACATTRVICAILETHQTET 350 (399)
Q Consensus 291 -----------------~~Ev~s~S-nc~Dyq-a~rl~i~y~~~~~~~~~~~~vHt-lngt~~ai~R~i~allE~~q~~~ 350 (399)
.+....|+ ...||+ ++||++.|.+.++....|.++|. +.| +++|+|++|+|+|++
T Consensus 463 ~~~~~ygpki~~~~~d~lg~~~~~gtiq~D~~l~~~~d~~Y~~~~g~~~~P~~ih~~~~G---gieR~i~~liE~~~~-- 537 (645)
T 1nyr_A 463 GEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVS---TMERFVAFLTEETKG-- 537 (645)
T ss_dssp SCSBTTBCEEEEEECCTTSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEE---EHHHHHHHHHHHHTT--
T ss_pred CCCceeCCccceehhhhhCchhhcceEEeecccccccceEEECCCCCccCcEEEEeccCC---cHHHHHHHHHHHhcC--
Confidence 01112232 124666 99999999876443345678885 444 499999999999998
Q ss_pred ceecCcccccccC
Q psy10034 351 GVRIPDCLRKFVP 363 (399)
Q Consensus 351 gi~iP~~L~py~~ 363 (399)
.||.||+|++.
T Consensus 538 --~~P~~lap~qv 548 (645)
T 1nyr_A 538 --AFPTWLAPKQV 548 (645)
T ss_dssp --CCCTTTCSSCE
T ss_pred --CCCCCCCCceE
Confidence 89999999865
No 20
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=3.5e-33 Score=294.81 Aligned_cols=168 Identities=15% Similarity=0.172 Sum_probs=146.1
Q ss_pred CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccccc
Q psy10034 110 RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFD 189 (399)
Q Consensus 110 ~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~ 189 (399)
.+.+||+.|++ .|+++. +++|+|.|+|.|++++++|++++++.+.++||++|.+|.|.+.++|..+|||+.|.
T Consensus 18 ~~~~~h~~l~~-~g~~~~------~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~ 90 (572)
T 2j3l_A 18 AEVLSHQILLR-AGYIRQ------VAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYG 90 (572)
T ss_dssp CCSHHHHHHHH-TTSEEE------EETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSC
T ss_pred cCCcCHHHHHh-CCCccc------cCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccc
Confidence 56789997776 588862 46899999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc--------------
Q psy10034 190 EELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL-------------- 255 (399)
Q Consensus 190 ~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g-------------- 255 (399)
++||.+.+++ +++++|+||+|++++.+|++.+.||++||+|+|++++|||+|.+
T Consensus 91 ~~m~~~~d~~------------~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~ 158 (572)
T 2j3l_A 91 PNLYRLKDRN------------DRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMK 158 (572)
T ss_dssp TTSCEEECTT------------CCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEE
T ss_pred hheEEEecCC------------CCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEe
Confidence 9999998763 46899999999999999999999999999999999999999974
Q ss_pred ----------------------------cCCccEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCc
Q psy10034 256 ----------------------------TKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNC 300 (399)
Q Consensus 256 ----------------------------~LgLpyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc 300 (399)
+|||+|+++..++|+||+..+++| |.++..+.+++.+|+.|
T Consensus 159 d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~~~~~~~~~g~~g~~~s~E~----~~~~~~ge~~~~~~~~~ 227 (572)
T 2j3l_A 159 DGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEF----MAISEIGEDTICYSTES 227 (572)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGTCSSEEEE----EEECTTCSEEEEEESSS
T ss_pred eeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccCCCcccEEE----EEEcCCCcceEEEeCCC
Confidence 799999999999999999876655 44444444444444433
No 21
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=9.3e-33 Score=284.46 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=189.0
Q ss_pred CccCCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccccc
Q psy10034 110 RKKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFD 189 (399)
Q Consensus 110 ~~~~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~ 189 (399)
.+.+||. ++.+.|+|+. +++|+|.|+|.|+++.++|++++++.+.+.||++|.+|.|.+.++|..+|||+.|.
T Consensus 38 a~~~~h~-ll~r~g~i~~------~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~ 110 (458)
T 2i4l_A 38 AEIVSHR-LMLRAGMLRQ------EAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYG 110 (458)
T ss_dssp CCSHHHH-HHHHTTCEEE------EETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSC
T ss_pred cCcchHH-HHhhcCCeec------cCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccc
Confidence 4577998 5556688863 46799999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc--------------
Q psy10034 190 EELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL-------------- 255 (399)
Q Consensus 190 ~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g-------------- 255 (399)
++||++.+++ +++++|+||+|+.++.++++.+.+|++||+++|++++|||+|++
T Consensus 111 ~em~~~~d~~------------~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~ 178 (458)
T 2i4l_A 111 PEMLRIADRH------------KRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMK 178 (458)
T ss_dssp TTSEEEECTT------------CCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEE
T ss_pred cceEEEEeCC------------CCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEe
Confidence 9999998863 56899999999999999999999999999999999999999954
Q ss_pred ----------------------------cCCccEEEEEeccCCCCccccceece-----------------eeecCCCcc
Q psy10034 256 ----------------------------TKSIAYRVVNIVSGALNHAAAKKLDL-----------------EAWFPGSGA 290 (399)
Q Consensus 256 ----------------------------~LgLpyrvv~~~sgdlg~~a~~~ydi-----------------E~w~P~~~~ 290 (399)
+|||+|+++..++|.+|+..+++|.. ..|......
T Consensus 179 d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~ 258 (458)
T 2i4l_A 179 DAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVD 258 (458)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCC
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhcc
Confidence 89999999999999999988776521 011111110
Q ss_pred --------------cceEE-------Ee--cCcc-------------hh-----hhhccccEEeccCCCCCceeEEEccc
Q psy10034 291 --------------FRELV-------SC--SNCL-------------DY-----QSRRLLVRYGQTKKMNEKIEFVHMLN 329 (399)
Q Consensus 291 --------------~~Ev~-------s~--Snc~-------------Dy-----qa~rl~i~y~~~~~~~~~~~~vHtln 329 (399)
+..+. .| ..|+ .| .+.+++++|.+. +++...+|+ .
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~~~s~~~g~ry~~~---~G~~~p~~~-~ 334 (458)
T 2i4l_A 259 YDGDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGP---DGTDAPIHG-G 334 (458)
T ss_dssp TTSCCHHHHHHHHHSCEEETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECT---TSCEEECEE-E
T ss_pred ccHhHHHHHhcCchhhhcChhhcccccccCCCCCcCceeeeeeccCcEEEecccccccCCcEEECC---CCCEeceEE-e
Confidence 00110 01 2231 23 378899999764 455566665 5
Q ss_pred ccccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 330 ATACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 330 gt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
|.|++++|+|+||+|++++++|+.||.|++||..
T Consensus 335 gfgiGveRli~al~e~~~d~~g~~~p~~~ap~~v 368 (458)
T 2i4l_A 335 SYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRV 368 (458)
T ss_dssp EEEEEHHHHHHHHHHHSEETTEECCCTTTCSCSE
T ss_pred eecccHHHHHHHHHHhhccccCCcCCcccCCceE
Confidence 8899999999999999999999999999999876
No 22
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.97 E-value=1.7e-32 Score=285.44 Aligned_cols=245 Identities=15% Similarity=0.065 Sum_probs=190.5
Q ss_pred CHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHH--HcCCeEecCCccccHHHHHHhcCccccccc
Q psy10034 114 SHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWI--EKGYTPLYTPFFMRKEVMQEVAQLAQFDEE 191 (399)
Q Consensus 114 dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~--~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~ 191 (399)
.|.+|+.+.|+|.....+=-..+|+|.|+|.|++|.++|++++++.+. +.||++|.+|.|.+.++|+.||||+.|.+.
T Consensus 7 ~~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~d~ 86 (505)
T 1ati_A 7 ELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADP 86 (505)
T ss_dssp HHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEE
T ss_pred HHHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcCcc
Confidence 578899999998753211001279999999999999999999999998 899999999999999999999999999999
Q ss_pred ceEEeccC--------------------c------------------c---------------CCCCC------------
Q psy10034 192 LYKVIGKG--------------------E------------------K---------------VGDSA------------ 206 (399)
Q Consensus 192 ~f~i~~~~--------------------~------------------~---------------~~~~~------------ 206 (399)
||+....+ . . -|...
T Consensus 87 m~~~~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fn 166 (505)
T 1ati_A 87 MVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFN 166 (505)
T ss_dssp EEEC--------------------------------------------------------------------CCCCEEEE
T ss_pred ceeccccccccchhhhhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhh
Confidence 99842100 0 0 00000
Q ss_pred ------CCCC--CCCCeeeeCCCChHHHHHHhcCcCCC-CCcCceeeeeccccccCCc----------------------
Q psy10034 207 ------PEKD--ELDDKYLIATSEQPICAVHRDSWLPE-ASLPIRYLGVSTCFRQEDL---------------------- 255 (399)
Q Consensus 207 ------~~~~--~~~~~~L~pTsE~~~~~l~~~~i~sy-~~LPlk~~~~s~~fR~E~g---------------------- 255 (399)
..+. .+..++|+|+++.+++..|.+.+.|| ++||+++|++++|||+|++
T Consensus 167 lmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~ 246 (505)
T 1ati_A 167 MMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRP 246 (505)
T ss_dssp CBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECG
T ss_pred hhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECH
Confidence 0000 01246777877778877778888899 9999999999999999976
Q ss_pred -------------------cCCccEEEEEecc---CCCCccccceeceeeecCCCcccceEEEecCcchhh-----h---
Q psy10034 256 -------------------TKSIAYRVVNIVS---GALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ-----S--- 305 (399)
Q Consensus 256 -------------------~LgLpyrvv~~~s---gdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyq-----a--- 305 (399)
+|||+|+++..++ +++++.+...||+|+|+|. +|.|+.+|++|+||+ +
T Consensus 247 e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~--~~~e~~g~~~~~d~~L~~~~~~~~ 324 (505)
T 1ati_A 247 GEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPH--GSLELEGIAQRTDFDLGSHTKDQE 324 (505)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETT--EEEEEEEEEECTTHHHHHHCSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhHHhhcCC--CCccchhhhcccceecchhhcccc
Confidence 8999987777665 5566566778999999985 689999999999997 3
Q ss_pred -------------hccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCC---------CCceecCcccccccC
Q psy10034 306 -------------RRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQT---------ETGVRIPDCLRKFVP 363 (399)
Q Consensus 306 -------------~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~---------~~gi~iP~~L~py~~ 363 (399)
++++++|.+. ++...+++++.|.+++++|+|+||+|++++ ..|+.||.+|+||+.
T Consensus 325 ~~~~~~~~~~n~~~~~~~~y~d~---~g~~~y~p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v 401 (505)
T 1ati_A 325 ALGITARVLRNEHSTQRLAYRDP---ETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKV 401 (505)
T ss_dssp TTTCCSCCCCCSCCCSCCCEECS---SSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSE
T ss_pred ccceeeeecccccceeEEEEEcC---CCCeeecceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceE
Confidence 7899999875 244445555557788899999999999732 345899999999876
No 23
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.96 E-value=9.1e-31 Score=267.30 Aligned_cols=192 Identities=13% Similarity=0.018 Sum_probs=156.6
Q ss_pred eEEEeccHHHHHHHHHHHHHHH-HHHHcC-CeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCC
Q psy10034 137 RGYFLKGPAVCLQVGLVQYALS-KWIEKG-YTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDD 214 (399)
Q Consensus 137 g~y~l~~~ga~l~~aL~~~~~d-~~~~~G-y~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~ 214 (399)
++++|.|.|+.|.+.|+++.+. +..+.| +.+|.+|. .++|+.||||++|.
T Consensus 95 ~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~~~SGH~d~~~------------------------- 146 (459)
T 3ikl_A 95 CHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPGPLLPGDSAFR------------------------- 146 (459)
T ss_dssp CSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCSCCCSSCSCCT-------------------------
T ss_pred cccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---ccccccCcchhhhc-------------------------
Confidence 4449999999999999985555 445566 67799998 66699999999875
Q ss_pred eeeeCCCChHHHHHHhcCcCCCC-CcCceeeeeccccccCC---c-----------------------------------
Q psy10034 215 KYLIATSEQPICAVHRDSWLPEA-SLPIRYLGVSTCFRQED---L----------------------------------- 255 (399)
Q Consensus 215 ~~L~pTsE~~~~~l~~~~i~sy~-~LPlk~~~~s~~fR~E~---g----------------------------------- 255 (399)
++|+|+.|+.+...|++...||+ +||++++|+|+|||+|+ +
T Consensus 147 ~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~ 226 (459)
T 3ikl_A 147 GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRH 226 (459)
T ss_dssp TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHH
Confidence 48999888888878888889998 99999999999999996 2
Q ss_pred ------cCCcc---EEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccc----cEEeccCCCCCce
Q psy10034 256 ------TKSIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLL----VRYGQTKKMNEKI 322 (399)
Q Consensus 256 ------~LgLp---yrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~----i~y~~~~~~~~~~ 322 (399)
+|||+ ||+...+..+ |.++||||+|+|. +|.|+.+||||+|||.++.. ++|.+. +++.
T Consensus 227 ~~~~~~~LGi~~~~~r~~~~~~ee----A~~~~DiE~~~p~--G~~E~~g~sn~tDfqL~~~~~~~~~~~~~~---dg~~ 297 (459)
T 3ikl_A 227 RLQWWRKFAMSPSNFSSSDCQDEE----GRKGNKLYYNFPW--GKELIETLWNLGDHELLHMYPGNVSKLHGR---DGRK 297 (459)
T ss_dssp HHHHHHHHCSSGGGEEEEEECCSS----SSCEEEEEEECSS--CEEEEEEEEEEETHHHHHHSCSCSSSSCCB---SSSC
T ss_pred HHHHHHHhCCChhhEEEeecCchH----HHhhcCeEEEcCC--ceEEEeeeeccchhhhhccccccCceeEcc---CCCe
Confidence 89998 9999986555 6789999999997 69999999999999987643 455543 3445
Q ss_pred eEEEcccccccchHHHHHHHHHhcCCCCc-------------eecCcccccccCCc
Q psy10034 323 EFVHMLNATACATTRVICAILETHQTETG-------------VRIPDCLRKFVPAV 365 (399)
Q Consensus 323 ~~vHtlngt~~ai~R~i~allE~~q~~~g-------------i~iP~~L~py~~~~ 365 (399)
.++|++++++++++|+++||||++.+++| +.||.||+||+...
T Consensus 298 k~~P~vi~~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~I 353 (459)
T 3ikl_A 298 NVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVAL 353 (459)
T ss_dssp BCCCEEEEEEEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEE
T ss_pred eeeeEEEEecccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEE
Confidence 67777778999999999999999666554 89999999999854
No 24
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.93 E-value=1.2e-26 Score=239.71 Aligned_cols=227 Identities=13% Similarity=0.138 Sum_probs=168.7
Q ss_pred cCCHHHHHHHcCCc------------cccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHH
Q psy10034 112 KYSHVDLITMIDGV------------DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVM 179 (399)
Q Consensus 112 ~~dH~el~~~l~l~------------d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~ 179 (399)
.++|+++++.++++ ++.. .+++|+|.|+|.|+++.++|++++++.+.++||++|.+|.|.+.++|
T Consensus 6 ~~~h~~~~~~~~~~~~~~h~~~~lg~~~~~---~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~ 82 (471)
T 3a32_A 6 DKTHIDYAYELDITVKPDSRVPVFNREFAT---FTGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELF 82 (471)
T ss_dssp -CCHHHHHHHTTSBCCTTSBCTTTCSBTHH---HHCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHH
T ss_pred CCCHHHHHHHcCccccCCchhHHHHHhcCC---ccCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHh
Confidence 46788888887776 2221 26789999999999999999999999999999999999999999999
Q ss_pred HHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCC---CcCceeeeeccccccCCc-
Q psy10034 180 QEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEA---SLPIRYLGVSTCFRQEDL- 255 (399)
Q Consensus 180 ~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~---~LPlk~~~~s~~fR~E~g- 255 (399)
.++|||+.|.++||++ +.+ ++.++|+||+|++++.+|++.+.||+ +||+|+|++++|||+|.+
T Consensus 83 ~~sg~~~~~~~emy~~-d~~------------~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~ 149 (471)
T 3a32_A 83 KVSGHIEFYRNNMYLF-DIE------------GHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSG 149 (471)
T ss_dssp HHTCCCTTGGGGSEEE-EET------------TEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGG
T ss_pred hhccCccccccceEEE-ecC------------CcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCc
Confidence 9999999999999999 442 46799999999999999999999998 999999999999999953
Q ss_pred -----------------------------------------c-CCc-----cEEEEEeccC-----C--CCcccccee--
Q psy10034 256 -----------------------------------------T-KSI-----AYRVVNIVSG-----A--LNHAAAKKL-- 279 (399)
Q Consensus 256 -----------------------------------------~-LgL-----pyrvv~~~sg-----d--lg~~a~~~y-- 279 (399)
. ||| +|+++..... + +|..+ .+
T Consensus 150 ~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~--~~d~ 227 (471)
T 3a32_A 150 SIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKE--EWEG 227 (471)
T ss_dssp GCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHH--HHHH
T ss_pred ccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHH--HHHH
Confidence 7 999 5988755442 1 11100 00
Q ss_pred --------------------------------ceeeecCC-CcccceEEEec-Ccchh-hhhccccEEec--cCCCCCce
Q psy10034 280 --------------------------------DLEAWFPG-SGAFRELVSCS-NCLDY-QSRRLLVRYGQ--TKKMNEKI 322 (399)
Q Consensus 280 --------------------------------diE~w~P~-~~~~~Ev~s~S-nc~Dy-qa~rl~i~y~~--~~~~~~~~ 322 (399)
.++..+.. .........|. ...|+ .++.|+++|-+ .++.. .+
T Consensus 228 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~gp~i~~~l~d~~~~l~~~~~~g~~~lD~~l~r~~d~~Yyt~~~~G~~-e~ 306 (471)
T 3a32_A 228 AEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIE-EV 306 (471)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEEEEEESSHHHHTTHHHHHHHHHCCS-CE
T ss_pred HHHHHHHHHHHHHHhcCCceEecccchhhCCCccceEEeccHHhhhhhheeeeEEecccccccCCceEeccccCCce-ee
Confidence 11221211 00001111121 12344 37899999987 43332 44
Q ss_pred eEEEcccccccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 323 EFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 323 ~~vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
.++|. +.+.+++|+|+++||++.+ .||.|++|++.
T Consensus 307 ~~i~~--~i~GgieRli~~lie~~~g----~~p~~~ap~qv 341 (471)
T 3a32_A 307 YIIHR--ALLGSIERFLGVYLEHRRG----RMPFTLAPIQF 341 (471)
T ss_dssp EEEEE--EEEEEHHHHHHHHHHHTTT----CCCGGGCSCSE
T ss_pred EEEec--cccCcHHHHHHHHHHHhCC----CCCCCcCCceE
Confidence 45663 3333799999999999874 89999999875
No 25
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.92 E-value=1.5e-26 Score=237.65 Aligned_cols=229 Identities=13% Similarity=0.009 Sum_probs=173.0
Q ss_pred CCHHHHHHHcCCccccccccccC-----ceEE-EeccHHHHHHHHHHHHHHHHH--HHcCCeEecCCccccHHHHHHh--
Q psy10034 113 YSHVDLITMIDGVDSEAGAIVAG-----GRGY-FLKGPAVCLQVGLVQYALSKW--IEKGYTPLYTPFFMRKEVMQEV-- 182 (399)
Q Consensus 113 ~dH~el~~~l~l~d~~~~~k~~G-----~g~y-~l~~~ga~l~~aL~~~~~d~~--~~~Gy~ev~~P~l~~~~l~~~s-- 182 (399)
..+.+|+++.|+|.... .+.| +|+| .|+|.|+.|.+.|++|+++.+ .+.||.+|.+|.|++.++|.++
T Consensus 25 ~~~~~l~krrgf~~~s~--eiy~g~~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~ 102 (454)
T 1g5h_A 25 EALVDLCRRRHFLSGTP--QQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSA 102 (454)
T ss_dssp CHHHHHHHHTTSBCCCG--GGGSHHHHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCC
T ss_pred HHHHHHHHHcCCccccc--hhcccCCCCCcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhcccccc
Confidence 45888999999987543 2322 2545 999999999999999999885 4789999999999999999987
Q ss_pred cC---ccccccc----------ceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCC-CcCceeeeecc
Q psy10034 183 AQ---LAQFDEE----------LYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEA-SLPIRYLGVST 248 (399)
Q Consensus 183 g~---~~~f~~~----------~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~-~LPlk~~~~s~ 248 (399)
|| |++|.++ ||.+-... .+..+||+|++|+.+...|++...||+ +||++++|+|+
T Consensus 103 g~~~r~d~~~e~~~~~g~~~eem~~~~~~~-----------~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~ 171 (454)
T 1g5h_A 103 FRLVSPESIREILQDREPSKEQLVAFLENL-----------LKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGV 171 (454)
T ss_dssp CEEECHHHHHHHHCC---CHHHHHHHHHHH-----------HHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEE
T ss_pred CcccHHHHHHHHhhccCCCHHHHHHHHHhh-----------cCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeee
Confidence 88 9999875 33220000 023689999999998988998888888 99999999999
Q ss_pred ccc---cCCc-----------------------------------------cCCcc---EEEEEeccCCCCccccceece
Q psy10034 249 CFR---QEDL-----------------------------------------TKSIA---YRVVNIVSGALNHAAAKKLDL 281 (399)
Q Consensus 249 ~fR---~E~g-----------------------------------------~LgLp---yrvv~~~sgdlg~~a~~~ydi 281 (399)
||| +|++ .||++ ||.... ..+. +..++|+
T Consensus 172 ~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~~-~~~~---a~~~~~i 247 (454)
T 1g5h_A 172 CFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSADC-QDEL---GRKGSKL 247 (454)
T ss_dssp EEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGGGEEEEEE-ECTT---SCEEEEE
T ss_pred eccCCcccccCCCCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCCCceeEEecCC-HHHH---HhcCCCc
Confidence 999 6975 89997 776543 2232 5679999
Q ss_pred eeecCCCcccceEEEecCcchhhh------hccccEEeccCCCCCceeEEEcccccccchHHHHHHHHHhcCCC------
Q psy10034 282 EAWFPGSGAFRELVSCSNCLDYQS------RRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTE------ 349 (399)
Q Consensus 282 E~w~P~~~~~~Ev~s~Snc~Dyqa------~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE~~q~~------ 349 (399)
|.|+|. +++|+.+|++|+||+. .|++++|.+. ++...+|++.. +++++|+++||||++.++
T Consensus 248 e~~~p~--g~~e~~g~~~~td~~l~~~~~~s~~~l~y~d~----~~~~~P~vi~~-s~Gv~R~i~aile~~~~~~~~~~~ 320 (454)
T 1g5h_A 248 YYSFPW--GKEPIETLWNLGDQELLHTYPGNVSTIQGRDG----RKNVVPCVLSV-SGDVDLGTLAYLYDSFQLAENSFA 320 (454)
T ss_dssp EEEETT--EEEEEEEEEEEESHHHHHHSTTCGGGSCEEET----TEEECCEEEEE-EEEHHHHHHHHHHHHEEC------
T ss_pred EEecCC--CceEEEEecCCCHHHHHhccCCceeeEEEECC----CCcEeeEEEeC-cccHHHHHHHHHHHhcchhhcccc
Confidence 999985 6889999999999974 4579999873 22223343322 467999998888876432
Q ss_pred -------CceecCcccccccCCc
Q psy10034 350 -------TGVRIPDCLRKFVPAV 365 (399)
Q Consensus 350 -------~gi~iP~~L~py~~~~ 365 (399)
.|+.||.||+|++...
T Consensus 321 ~g~d~~r~~l~~P~~lAP~qV~I 343 (454)
T 1g5h_A 321 RKKSLQRKVLKLHPCLAPIKVAL 343 (454)
T ss_dssp ------CCEECCCTTTCSCCEEE
T ss_pred cCCcccceeEecCcccCCCeEEE
Confidence 2589999999988743
No 26
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.81 E-value=3.8e-20 Score=198.60 Aligned_cols=143 Identities=15% Similarity=0.094 Sum_probs=107.6
Q ss_pred CCHHHHHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHH-HcCCeEecCCccccHHHHHHhcCccccccc
Q psy10034 113 YSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEE 191 (399)
Q Consensus 113 ~dH~el~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~-~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~ 191 (399)
..-.+|+.+.|++.....+--..+|+|.|+|.|++|.+.|++++++.+. ..||++|.+|.|.+.++|+.||||..|.+.
T Consensus 68 ~~~~~l~~r~gf~~~~~eiy~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~ 147 (693)
T 2zt5_A 68 AKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADF 147 (693)
T ss_dssp HHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEE
T ss_pred HHHHHHHHhCCCcccchhhcCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCccccccc
Confidence 3456799999998754321101279999999999999999999999987 669999999999999999999999999998
Q ss_pred ceEEeccCc-----------------------------------------------------cCCCC-------------
Q psy10034 192 LYKVIGKGE-----------------------------------------------------KVGDS------------- 205 (399)
Q Consensus 192 ~f~i~~~~~-----------------------------------------------------~~~~~------------- 205 (399)
||...++++ ..|..
T Consensus 148 m~~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlm 227 (693)
T 2zt5_A 148 MVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLM 227 (693)
T ss_dssp EEEBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECC
T ss_pred ceeeccCCceeeccHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhhee
Confidence 886543320 00000
Q ss_pred ---CCCCCCCCCeeeeCCCChHHHHHHhcCcCC-CCCcCceeeeeccccccCCc
Q psy10034 206 ---APEKDELDDKYLIATSEQPICAVHRDSWLP-EASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 206 ---~~~~~~~~~~~L~pTsE~~~~~l~~~~i~s-y~~LPlk~~~~s~~fR~E~g 255 (399)
...+..+...||+|-...++...|.+...+ |++||+++||+|+|||+|++
T Consensus 228 f~t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEis 281 (693)
T 2zt5_A 228 FKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEIS 281 (693)
T ss_dssp CEEECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSS
T ss_pred eeccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCC
Confidence 001112346788886666676666666555 89999999999999999965
No 27
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.71 E-value=4.9e-18 Score=172.25 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=92.4
Q ss_pred cCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh--cCcccccccceEEeccCccCCCCCCCCCC
Q psy10034 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV--AQLAQFDEELYKVIGKGEKVGDSAPEKDE 211 (399)
Q Consensus 134 ~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s--g~~~~f~~~~f~i~~~~~~~~~~~~~~~~ 211 (399)
..+|++.|+|.|+++.++|++++++.+.++||++|.+|.|.+.++|..+ |||+.|.++||++.|++
T Consensus 4 ~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~------------ 71 (420)
T 1qe0_A 4 IPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG------------ 71 (420)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHH------------
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCC------------
Confidence 3468999999999999999999999999999999999999999999999 89999999999998753
Q ss_pred CCCeeeeCCCChHHHHHHhcCcCCC-CCcCceeeeeccccccCC
Q psy10034 212 LDDKYLIATSEQPICAVHRDSWLPE-ASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 212 ~~~~~L~pTsE~~~~~l~~~~i~sy-~~LPlk~~~~s~~fR~E~ 254 (399)
++.++|+||+|++++.++.+...+| ++||+|+|++++|||+|.
T Consensus 72 g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~ 115 (420)
T 1qe0_A 72 DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYER 115 (420)
T ss_dssp HCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--
T ss_pred CCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCC
Confidence 4689999999999999999999999 999999999999999995
No 28
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.63 E-value=4.5e-16 Score=157.88 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=102.1
Q ss_pred cCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh-cC-cccccccceEEeccCccCCCCCCCCCC
Q psy10034 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQ-LAQFDEELYKVIGKGEKVGDSAPEKDE 211 (399)
Q Consensus 134 ~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s-g~-~~~f~~~~f~i~~~~~~~~~~~~~~~~ 211 (399)
.++|++.|+|.++++.+.|++++++.+.++||++|.||.|.+.++|..+ |+ |+.+.++||++.|++
T Consensus 5 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~------------ 72 (421)
T 1h4v_B 5 AVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG------------ 72 (421)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCC------------
Confidence 4579999999999999999999999999999999999999999999998 88 899999999998863
Q ss_pred CCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 212 ~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
++.++|+|+.+++++-++.....++++||+|+|+++++||+|.
T Consensus 73 g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~ 115 (421)
T 1h4v_B 73 GRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAER 115 (421)
T ss_pred CCEEeeCCcchHHHHHHHHhccccccCCCeEEEEecCeecCCC
Confidence 5789999999999999998877899999999999999999995
No 29
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.58 E-value=2e-15 Score=155.67 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=101.1
Q ss_pred cCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh-cC-cccccccceEEeccCccCCCCCCCCCC
Q psy10034 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQ-LAQFDEELYKVIGKGEKVGDSAPEKDE 211 (399)
Q Consensus 134 ~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s-g~-~~~f~~~~f~i~~~~~~~~~~~~~~~~ 211 (399)
+.+|++.|+|.++++.+.|++++++.+.++||++|.||.|.+.++|..+ |+ |+.+.++||++.|.+ .
T Consensus 34 ~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~-----------~ 102 (467)
T 4e51_A 34 GVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDAL-----------N 102 (467)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTT-----------T
T ss_pred CCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCC-----------C
Confidence 4578999999999999999999999999999999999999999999998 98 888999999998752 0
Q ss_pred CCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 212 ~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
++.++|+|+.|++++-++.....+| +||+|+|++++|||+|..
T Consensus 103 g~~l~LRPd~t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~ 145 (467)
T 4e51_A 103 GENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERP 145 (467)
T ss_dssp CCEEEECSCSHHHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC
T ss_pred CCEEEeCcccHHHHHHHHHHccccc-CCCEEEEEEccEEccCCC
Confidence 4679999999999999999988899 699999999999999963
No 30
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.57 E-value=1.3e-15 Score=154.68 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=99.4
Q ss_pred cCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh-cC-cccccccceEEeccCccCCCCCCCCCC
Q psy10034 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQ-LAQFDEELYKVIGKGEKVGDSAPEKDE 211 (399)
Q Consensus 134 ~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s-g~-~~~f~~~~f~i~~~~~~~~~~~~~~~~ 211 (399)
.++|++.|+|.++++.+.|++.+++.+.++||++|.||.|.+.++|..+ |+ |+.+.++||++.|++
T Consensus 6 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~------------ 73 (423)
T 1htt_A 6 AIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRN------------ 73 (423)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTT------------
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCC------------
Confidence 4679999999999999999999999999999999999999999999998 88 899999999998863
Q ss_pred CCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 212 ~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
++.++|+|+.+.+++-++... .+|++||+|+|+++++||+|.
T Consensus 74 g~~l~Lrpd~t~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~ 115 (423)
T 1htt_A 74 GDSLTLRPEGTAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHER 115 (423)
T ss_dssp SCEEEECSCSHHHHHHHHHHH-TCSTTCCEEEEEEEEEECCCC
T ss_pred CCEEEeCCCchHHHHHHHHhc-ccccCCCeEEEEEcCEecCCC
Confidence 578999999999999988755 468899999999999999995
No 31
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.55 E-value=4.3e-15 Score=151.47 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=97.1
Q ss_pred cCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHH-hcCcccccccceEEeccCccCCCCCCCCCCC
Q psy10034 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKVIGKGEKVGDSAPEKDEL 212 (399)
Q Consensus 134 ~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~ 212 (399)
.++|++.|+|.++++.+.|++.+++.+.++||++|.||.|.+.++|.. +|+ .+.++||++.|++ +
T Consensus 8 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~------------g 73 (434)
T 1wu7_A 8 KIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKG------------G 73 (434)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTT------------S
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCC------------C
Confidence 567999999999999999999999999999999999999999999998 788 7889999998863 5
Q ss_pred CCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 213 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 213 ~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
+.++|+|+.+++++-++... .++ +||+|+|+++++||+|.
T Consensus 74 ~~l~LrPd~t~~~aR~~~~~-~~~-~lP~rl~~~g~vfR~er 113 (434)
T 1wu7_A 74 REVTLIPEATPSTVRMVTSR-KDL-QRPLRWYSFPKVWRYEE 113 (434)
T ss_dssp CEEEECSCSHHHHHHHHTTC-TTC-CSSEEEEECCEEECCCC
T ss_pred CEEEeCCCChHHHHHHHHhc-CCC-CCCeEEEEEcCeecCCC
Confidence 68999999999999999877 666 89999999999999994
No 32
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.44 E-value=7.7e-14 Score=138.45 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=98.3
Q ss_pred cCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHh--cCcccccccceEEeccCccCCCCCCCCCC
Q psy10034 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV--AQLAQFDEELYKVIGKGEKVGDSAPEKDE 211 (399)
Q Consensus 134 ~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~s--g~~~~f~~~~f~i~~~~~~~~~~~~~~~~ 211 (399)
.+.|++.|+|.++++.+.|++.+++.+.++||++|.||.|-+.++|..+ |+++.+.++||++.|++
T Consensus 24 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~------------ 91 (344)
T 1z7m_A 24 LPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE------------ 91 (344)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT------------
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCC------------
Confidence 4679999999999999999999999999999999999999999999987 99999999999998763
Q ss_pred CCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCccCC
Q psy10034 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLTKS 258 (399)
Q Consensus 212 ~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g~Lg 258 (399)
++.++|+|..+.+++-++... ++++|+|+|++++|||+|....|
T Consensus 92 g~~l~LRpd~T~~~aR~~~~~---~~~~P~rl~y~g~vfR~e~p~~g 135 (344)
T 1z7m_A 92 GQSITLRYDFTLPLVRLYSQI---KDSTSARYSYFGKIFRKEKRHKG 135 (344)
T ss_dssp CCEEEECCCSHHHHHHHHHTC---CSCCCEEEEEEEECCCCCC----
T ss_pred CCEEecCCCCcHHHHHHHHhc---CCCCCeEEEEECcEEccCCCCCC
Confidence 568999999999999988875 78899999999999999965443
No 33
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.32 E-value=9.3e-13 Score=132.00 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=94.0
Q ss_pred cCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccccc-ccceEEeccCccCCCCCCCCCCC
Q psy10034 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFD-EELYKVIGKGEKVGDSAPEKDEL 212 (399)
Q Consensus 134 ~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~-~~~f~i~~~~~~~~~~~~~~~~~ 212 (399)
..+|++.|+|.++++.+.|++.+++.+.++||++|.||.|-+.++|..+| +.+. ++||++.|++ +
T Consensus 25 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g--~~~~~~~my~~~D~~------------g 90 (373)
T 3rac_A 25 RPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRAR--SPESSRDWIRLFDGG------------G 90 (373)
T ss_dssp CCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTS--CTTSCCCCCBCCCCS------------S
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcC--CccchhceEEEECCC------------C
Confidence 45789999999999999999999999999999999999999999999987 4566 7999998763 5
Q ss_pred CCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 213 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 213 ~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+.++|+|+.+++++-++.... ..+++|+|+|.+++|||+|..
T Consensus 91 ~~l~LRpd~T~~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~ 132 (373)
T 3rac_A 91 DAVALRPEMTPSIARMAAPRV-AAGRTPIRWCYCERVYRRTDD 132 (373)
T ss_dssp SCEEECSSSHHHHHHHHHHHH-HTTCCCCEEEEEEEEEECC--
T ss_pred CEEEECCcCHHHHHHHHHhcc-ccCCCCeEEEEEcceEccCCC
Confidence 689999999999998887653 347899999999999999975
No 34
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.29 E-value=2e-12 Score=130.78 Aligned_cols=107 Identities=18% Similarity=0.141 Sum_probs=95.7
Q ss_pred cCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCC
Q psy10034 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELD 213 (399)
Q Consensus 134 ~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~ 213 (399)
...|++.|+|.++++.+.|++.+++.+.++||++|.||.|-+.++|..+| +.+.++||++.|++ ++
T Consensus 12 ~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g--~~~~~~my~f~D~~------------g~ 77 (400)
T 3od1_A 12 KPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLLDQQ------------GN 77 (400)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHS--SSCGGGSCEEECTT------------SC
T ss_pred CCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcC--CccccceEEEECCC------------CC
Confidence 45789999999999999999999999999999999999999999999887 56678999998863 56
Q ss_pred CeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 214 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 214 ~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.++|+|..+.+++-++.+. ..++++|+|+|.+++|||+|..
T Consensus 78 ~l~LRpd~T~~~aR~~~~~-~~~~~~P~r~~y~g~vfR~e~~ 118 (400)
T 3od1_A 78 TLVLRPDMTAPIARLVASS-LKDRAYPLRLAYQSNVYRAQQN 118 (400)
T ss_dssp EEEECSCSHHHHHHHHHHH-CSSSCSCEEEEEEEEEECCCC-
T ss_pred EEEECCCCHHHHHHHHHhh-cccCCCCeEEEEEcCEEeCCCC
Confidence 8999999999999888764 4578999999999999999964
No 35
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.25 E-value=3.1e-11 Score=116.93 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHH
Q psy10034 148 LQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICA 227 (399)
Q Consensus 148 l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~ 227 (399)
..++|++++++.+...||+||.+|.|.+.++|..+|+++. .+||.+.+.. .++++|+||.++.++.
T Consensus 72 ~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~--~~m~~~~npl------------~e~~~LRp~l~p~l~~ 137 (288)
T 3dsq_A 72 ALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGED--HPLFSQVFWL------------DGKKCLRPMLAPNLYT 137 (288)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC----CCTTTSCEE------------ETTEEECSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcc--cccEEeeccc------------ccchhhhhcChHHHHH
Confidence 3578999999999999999999999999999999999873 1344322110 1368999999999998
Q ss_pred HHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 228 VHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 228 l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+++....+ +++|+|++++|+|||+|..
T Consensus 138 ~~r~~~~~-~~~PlrlfeiG~vFR~E~~ 164 (288)
T 3dsq_A 138 LWRELERL-WDKPIRIFEIGTCYRKESQ 164 (288)
T ss_dssp HHHHHTTT-SCSCEEEEEEEEEECSCCS
T ss_pred HHHHHHhC-CCCCEEEEEEeeEEecCCC
Confidence 87776555 8999999999999999964
No 36
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.24 E-value=3.3e-12 Score=131.19 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=95.2
Q ss_pred cCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHH-hcCcccccccceEEeccCccCCCCCCCCCCC
Q psy10034 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKVIGKGEKVGDSAPEKDEL 212 (399)
Q Consensus 134 ~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~-sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~ 212 (399)
...|++.|+|.++++.+.|++.+++.+.++||++|.||.|-+.++|.. +|+. +.++||++.|++ +
T Consensus 31 ~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~------------g 96 (456)
T 3lc0_A 31 PVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKG------------G 96 (456)
T ss_dssp CSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSS------------S
T ss_pred CCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCC------------C
Confidence 457899999999999999999999999999999999999999999986 4774 678999998863 5
Q ss_pred CCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 213 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 213 ~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+.++|+|..+.+++-++.... .+.++|+|+|.+++|||+|..
T Consensus 97 ~~l~LRpd~T~~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~ 138 (456)
T 3lc0_A 97 HRVALRPEMTPSLARLLLGKG-RSLLLPAKWYSIPQCWRYEAI 138 (456)
T ss_dssp CEEEECSCSHHHHHHHHHHSC-TTCCSSEEEEECCEEECCCC-
T ss_pred CEEecCCcCHHHHHHHHHhcC-cccCCCEEEEEeccEEecCCC
Confidence 689999999999999887764 478999999999999999964
No 37
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.05 E-value=1.7e-10 Score=118.79 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=93.8
Q ss_pred HHHHcCCccccccccccCceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEec
Q psy10034 118 LITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIG 197 (399)
Q Consensus 118 l~~~l~l~d~~~~~k~~G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~ 197 (399)
+|.+-+.+.+.. -.|+.-|+|..+.+.+.|++.+++.+.++||++|.||.|-..++|..+| +...++||++.|
T Consensus 3 ~~~~~~~~~~~~-----p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G--~~~ke~m~~~~d 75 (465)
T 3net_A 3 AMAKNDKINFST-----PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG--NQGDNIIYGLEP 75 (465)
T ss_dssp ------CCCCSC-----CTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG--CC--CBEEEEEE
T ss_pred cccCCccccccC-----CCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccC--CCCccceEEEec
Confidence 466777777654 3588999999999999999999999999999999999999999999887 444444999987
Q ss_pred c---CccCCCCCCCCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 198 K---GEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 198 ~---~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+ +.........+..++.++|+|..++|++-++.... .+..+|+|+|.+++|||.|..
T Consensus 76 ~~~~g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~p~r~~y~g~vfR~e~~ 135 (465)
T 3net_A 76 ILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHL-NDLTFPFARYQMDVVFRGERA 135 (465)
T ss_dssp EC----------------CCEEECSCSHHHHHHHHHHHG-GGSCSSEEEEECCEEECBC--
T ss_pred ccccccccccccccCCCCCEEEeCCCChHHHHHHHHhcc-cccCCCeEEEEeccEEecCCC
Confidence 6 10000000000014689999999999998887654 467899999999999999964
No 38
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=98.92 E-value=1.7e-09 Score=110.60 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=84.7
Q ss_pred CceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCC
Q psy10034 135 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDD 214 (399)
Q Consensus 135 G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~ 214 (399)
..|++-|+|.++++.+.|++.+++.+.++||++|.||.|-+.++|..+.. ...++||++.|++ ++.
T Consensus 17 p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g--~~~~~~y~f~D~~------------g~~ 82 (464)
T 4g84_A 17 PKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQG------------GEL 82 (464)
T ss_dssp CTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC------CCCBBCCCS------------SCC
T ss_pred CCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccC--cCcceeEEEECCC------------CCE
Confidence 35889999999999999999999999999999999999999999965332 2346899998873 578
Q ss_pred eeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 215 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 215 ~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
++|+|-...+++-++.. ++.+|+|+|+++++||+|-
T Consensus 83 l~LRPd~T~~~aR~~~~----~~~~p~k~~y~g~vfR~er 118 (464)
T 4g84_A 83 LSLRYDLTVPFARYLAM----NKLTNIKRYHIAKVYRRDN 118 (464)
T ss_dssp EEECSCSHHHHHHHHHH----TTCSCEEEEEEEEEECCCC
T ss_pred EEeCCcCcHHHHHHHHh----cCCCCceeEEEecceeccC
Confidence 99999777788766543 4678999999999999994
No 39
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=98.85 E-value=2.7e-09 Score=111.00 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=84.5
Q ss_pred CceEEEeccHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCC
Q psy10034 135 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDD 214 (399)
Q Consensus 135 G~g~y~l~~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~ 214 (399)
..|+.-|+|.++++.+.|++.+++.+.++||++|.||.|-+.++|.++.. ...+.||.+.|++ ++.
T Consensus 70 P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~g--e~~~~my~f~D~~------------g~~ 135 (517)
T 4g85_A 70 PKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQG------------GEL 135 (517)
T ss_dssp CTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC--------CSCBBCCTT------------SCC
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccC--cCcceeEEEECCC------------CCE
Confidence 35788999999999999999999999999999999999999999965332 2346799998863 578
Q ss_pred eeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 215 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 215 ~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
++|+|-...|++-++.. ++.+|+|+|+++++||+|-
T Consensus 136 l~LRPd~T~~~aR~~~~----~~~~p~k~yyig~vfR~Er 171 (517)
T 4g85_A 136 LSLRYDLTVPFARYLAM----NKLTNIKRYHIAKVYRRDN 171 (517)
T ss_dssp EEECSCSHHHHHHHHHH----TTCSCEEEEEEEEEECCCC
T ss_pred EEeCCcCcHHHHHHHHh----CCCCCceeEEEeceEeccC
Confidence 99999888888876653 4568999999999999994
No 40
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.49 E-value=2.3e-07 Score=89.58 Aligned_cols=90 Identities=13% Similarity=0.280 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccc--ccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQ--FDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPIC 226 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~--f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~ 226 (399)
..++++.+++.+...||+||.+|.|+..+.+...+.... ..+++|.++ +.++|+||....+.
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~----------------~~~~LR~slsp~L~ 142 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVD----------------KNFCLRPMLTPNLY 142 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEET----------------TTEEECSCSHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeC----------------CCeeEcccChHHHH
Confidence 477888899999999999999999999999888775543 344577663 35899999988887
Q ss_pred HHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 227 AVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 227 ~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
..+.. ..+...+|+|+|++++|||+|..
T Consensus 143 ~~l~~-n~~~~~~p~rlfeiG~vFR~E~~ 170 (290)
T 3qtc_A 143 NYLRK-LDRALPDPIKIFEIGPCYRKESD 170 (290)
T ss_dssp HHHHH-HTTTSCSSEEEEEEEEEECCCSC
T ss_pred HHHHH-hhccCCCCeEEEEEcCEEecCCC
Confidence 65543 34557889999999999999964
No 41
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=98.16 E-value=3.9e-07 Score=87.34 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=63.4
Q ss_pred HHHHHHH--HHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHH
Q psy10034 151 GLVQYAL--SKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAV 228 (399)
Q Consensus 151 aL~~~~~--d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l 228 (399)
.|+++++ +.+.++||++|.||.|-+.++|.. + +| .+.+ ++.++|+|..+++++
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~--------d-~f--~d~~------------g~~l~LRpd~T~~~a-- 59 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG--------N-FF--LDRK------------GNLFSIREDFTKTVL-- 59 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS--------S-CE--EETT------------SCEEEECCCHHHHHH--
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc--------c-cc--CCCC------------CCEEEeCCcChHHHH--
Confidence 4677887 889999999999999999999954 2 55 2331 568999999999999
Q ss_pred HhcCcCCCCC-cCceeeeeccccccCCc
Q psy10034 229 HRDSWLPEAS-LPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 229 ~~~~i~sy~~-LPlk~~~~s~~fR~E~g 255 (399)
.+ ...+++ +|+|++.+++|||.|..
T Consensus 60 -~~-~~~~~~~~p~R~~y~g~vfR~e~~ 85 (275)
T 1usy_A 60 -NH-RKRYSPDSQIKVWYADFVYRYSGS 85 (275)
T ss_dssp -HH-HTTCTTCCCEEEECCEEEEEEETT
T ss_pred -HH-HhhcCCCCceEEEEeceEEecCCC
Confidence 22 234778 99999999999999974
No 42
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=97.09 E-value=0.00049 Score=66.36 Aligned_cols=90 Identities=12% Similarity=0.019 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEecCCccccH-HHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCC
Q psy10034 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK-EVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATS 221 (399)
Q Consensus 143 ~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~-~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTs 221 (399)
..-.++...+++.+++.+.+.||.+|.||.|... ++...+..-+. .++|.+.-. +.+++|..+.
T Consensus 12 ~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~~~-------------~~~~~L~~Sp 76 (294)
T 1nnh_A 12 SPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVEIY-------------GVKMRLTHSM 76 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEEET-------------TEEEEECSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEEcC-------------CCCEEeccCh
Confidence 3567889999999999999999999999999988 43322101111 456776422 3467886444
Q ss_pred ChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 222 EQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 222 E~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
|..+-.+... . |.|+|++++|||+|.
T Consensus 77 e~~~~~l~~~------g-~~rvf~ig~~FR~E~ 102 (294)
T 1nnh_A 77 ILHKQLAIAM------G-LKKIFVLSPNIRLES 102 (294)
T ss_dssp HHHHHHHHHT------T-CCEEEEEEEEECCCC
T ss_pred HHHHHHHhhc------C-ccceEEEEccEeCCC
Confidence 4433333321 1 679999999999997
No 43
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=96.79 E-value=0.0018 Score=65.79 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++...+++.+++.+.++||.+|.||.|.... ++ -.-++|.+.-- +.+++|.-+.|.
T Consensus 132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~-----~e---~~~~~f~~~~~-------------~~~~~L~~Spql 190 (429)
T 1wyd_A 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIASA-----TE---GGAQLFPVIYF-------------GKEAFLAQSPQL 190 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----SS---TTCCCCEEEET-------------TEEEEECSCCHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeC-----CC---CCceeEEEecC-------------CceEEecCCcHH
Confidence 4668889999999999999999999999999761 11 12367877532 346889644444
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+-.+... +-|+|++++|||+|-.
T Consensus 191 ~~~~~~~g--------~~rvf~ig~~FR~E~~ 214 (429)
T 1wyd_A 191 YKELMAGV--------VERVFEVAPAWRAEES 214 (429)
T ss_dssp HHHHHHHH--------HSEEEEEEEEECCCCC
T ss_pred HHHHHHhC--------cCceEEEcccccccCC
Confidence 42232221 6799999999999964
No 44
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=96.72 E-value=0.0024 Score=65.78 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCC
Q psy10034 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSE 222 (399)
Q Consensus 143 ~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE 222 (399)
..-.++..++++.+++.+..+||.||.||.|.... ++ -+-++|.+... +.++||.-+.|
T Consensus 175 ~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~----~~----~ga~~f~~~~~-------------~~~~~L~~Spq 233 (487)
T 1eov_A 175 QAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SE----GGSSVFEVTYF-------------KGKAYLAQSPQ 233 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SS----SSSCCCEEEET-------------TEEEEECSCTH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec----CC----CCcccceeccC-------------CccEEcccChH
Confidence 35668899999999999999999999999999864 21 12357887642 34688886655
Q ss_pred hHHHHHHhcCcCCCCCcCceeeeeccccccCCcc--CCc-cEEEEEe
Q psy10034 223 QPICAVHRDSWLPEASLPIRYLGVSTCFRQEDLT--KSI-AYRVVNI 266 (399)
Q Consensus 223 ~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g~--LgL-pyrvv~~ 266 (399)
..+-.++... +-|+|++++|||+|-.. --+ .|..+++
T Consensus 234 l~~k~l~~~g-------~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~ 273 (487)
T 1eov_A 234 FNKQQLIVAD-------FERVYEIGPVFRAENSNTHRHMTEFTGLDM 273 (487)
T ss_dssp HHHHHHHHTT-------CCEEEEEEEEECCCCCCCTTCCSEEEEEEE
T ss_pred HHHHHHHhcC-------CCceEEEeccEecCCCCCCccchhhhhhhh
Confidence 5432222211 45999999999999751 222 4555553
No 45
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=96.62 E-value=0.0032 Score=62.08 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++++.++||.||.||.|.+... .|- .-..|.+.--+. ....+.++||.-+.|.
T Consensus 34 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---~~a----~~~~F~~~~~~~-------~~~~~~~~yL~~Spql 99 (345)
T 3a5y_A 34 PNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV---TDI----HLVPFETRFVGP-------GHSQGMNLWLMTSPEY 99 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC---CCT----TCCCCEEEECCS-------TTSCCEEEEECSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC---CCC----ccceEEEEecCc-------ccccCCCEeecCCHHH
Confidence 46788999999999999999999999999997651 111 123455442100 0000135787766554
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+--++..-. =|+|++++|||+|-.
T Consensus 100 ~~k~l~~~g~-------~rvyqIg~~FR~E~~ 124 (345)
T 3a5y_A 100 HMKRLLVAGC-------GPVFQLCRSFRNEEM 124 (345)
T ss_dssp HHHHHHHTTC-------CSEEEEEEEECCCCC
T ss_pred HHHHHHHcCC-------CcEEEEEcceeCCCC
Confidence 4442333211 289999999999975
No 46
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=96.47 E-value=0.0037 Score=63.45 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCC
Q psy10034 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSE 222 (399)
Q Consensus 143 ~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE 222 (399)
..-.++...+++.+++.+.++||.+|.||.|... +++ -.-++|.+.-- +.+++|. +|-
T Consensus 132 ~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~-----~~e---~~~~~f~~~~~-------------~~~~~Lr-~Sp 189 (434)
T 1x54_A 132 SAIMKVKETLIMAAREWLLKDGWHEVFPPILVTG-----AVE---GGATLFKLKYF-------------DKYAYLS-QSA 189 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC-----CSS---CGGGCCEEEET-------------TEEEEEC-SCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee-----cCC---CCceeEEEeec-------------CCcEEec-cCh
Confidence 3466888999999999999999999999999966 111 12367777532 3468888 443
Q ss_pred hHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 223 QPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 223 ~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+-+..++.. -|.|+|++++|||+|-.
T Consensus 190 el~~~~~~~-------g~~rvf~ig~~FR~E~~ 215 (434)
T 1x54_A 190 QLYLEAAIF-------GLEKVWSLTPSFRAEKS 215 (434)
T ss_dssp HHHHHHHHH-------HHSEEEEEEEEECCCCC
T ss_pred HHHHHHHhc-------CccceEEEecceecCCC
Confidence 333222211 27899999999999953
No 47
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=96.26 E-value=0.0061 Score=61.95 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++.+.+++++.++||.||.||.|..... + |. -++|.+..- +.++||.-+.|.
T Consensus 135 ~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~-e--g~-----~~~f~~~~~-------------~~~~yL~~Spql 193 (438)
T 3nem_A 135 AIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT-E--GG-----TELFPMKYF-------------EEDAFLAQSPQL 193 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS-S--CS-----SSCCEEEET-------------TEEEEECSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC-C--CC-----ccceeEeeC-------------CccEEEecChHH
Confidence 45688899999999999999999999999988642 1 22 235655532 346888766544
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+-.+.... --|+|++++|||+|-.
T Consensus 194 ~~q~l~~~g-------~~rvf~i~~~FR~E~~ 218 (438)
T 3nem_A 194 YKQIMMASG-------LDRVYEIAPIFRAEEH 218 (438)
T ss_dssp HHHHGGGTT-------CCEEEEEEEEECCCSS
T ss_pred HHHHHHhcC-------CCceEEEcceEECCCC
Confidence 332222111 2389999999999965
No 48
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=96.24 E-value=0.0084 Score=61.84 Aligned_cols=86 Identities=12% Similarity=0.058 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++.+.++||.||.||.|... .+|. ...+|.+.... .+.++||.-+.|.
T Consensus 172 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~----~~Ga----~a~~F~~~~~~-----------~~~~~yLr~SpqL 232 (493)
T 3a74_A 172 KTFITRSLIIQSMRRYLDSHGYLEVETPMMHAV----AGGA----AARPFITHHNA-----------LDMTLYMRIAIEL 232 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSS----SSCCCEEEETT-----------TTEEEEECSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEECCeEEec----CCCC----cccceEecccC-----------CCceeEEecCHHH
Confidence 456888999999999999999999999999865 1221 12567665221 1456888843332
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.++.. -.-|+|++++|||+|-.
T Consensus 233 ylk~l~v~-------G~~rVyeig~~FR~E~~ 257 (493)
T 3a74_A 233 HLKRLIVG-------GLEKVYEIGRVFRNEGI 257 (493)
T ss_dssp HHHHHHHT-------TCCEEEEEEEEECCCCC
T ss_pred HHHHHhhc-------ccCceEEECccccCCCC
Confidence 22112211 13589999999999965
No 49
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=96.17 E-value=0.0042 Score=62.82 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++...+++.+++.+.++||.||.||.|..... ++ .-++|.+.-- +.+++|.-+.|.
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~-e~-------~~~~f~~~~~-------------g~~~~L~~Spel 181 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGA-EG-------GSGLFGVDYF-------------EKRAYLAQSPQL 181 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC-------------------------------------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCC-CC-------CceeEEEeeC-------------CCcEEeeeCHHH
Confidence 45688899999999999999999999999986621 11 1246766421 346788543343
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+ .++.. - +-|+|++++|||+|-.
T Consensus 182 ~~-~~l~~------g-~~rvf~ig~~FR~E~~ 205 (422)
T 1n9w_A 182 YK-QIMVG------V-FERVYEVAPVWRMEEH 205 (422)
T ss_dssp HH-HHHHH------H-HSEEEEEEEC------
T ss_pred HH-HHHhh------C-CCceeEEeCceECCCC
Confidence 32 33221 1 3699999999999964
No 50
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=96.11 E-value=0.0055 Score=62.24 Aligned_cols=84 Identities=13% Similarity=0.208 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCC
Q psy10034 143 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSE 222 (399)
Q Consensus 143 ~~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE 222 (399)
..-.++..++++.+++++.++||.||.||.|..... .|. .++|.++-- +.++||.-+.+
T Consensus 129 ~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~---eG~-----~~~F~~~~~-------------g~~~~L~~Spq 187 (435)
T 2xgt_A 129 AALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV---EGG-----STLFNLDYF-------------GEQSFLTQSSQ 187 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS---SCT-----TSCCEEEET-------------TEEEEECSCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC---CCc-----hhceeeccC-------------CcccccCCChH
Confidence 346688999999999999999999999999987653 232 235666532 34678865544
Q ss_pred hHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 223 QPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 223 ~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
..+-.+.. . + =|+|++++|||+|-.
T Consensus 188 Lylq~l~~----g---~-~rvfeIg~~FR~E~~ 212 (435)
T 2xgt_A 188 LYLETCIP----T---L-GDVFCIAQSYRAEKS 212 (435)
T ss_dssp HHHHHHHH----H---H-CSEEEEEEEECCCSS
T ss_pred HHHHHhhh----c---c-CceEEEecceecCCC
Confidence 32222221 1 1 389999999999974
No 51
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=95.96 E-value=0.012 Score=60.96 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++++.++||.||.||.|... ..|- ...+|.+..+. .+.++||.-+.|.
T Consensus 181 ~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~----~~Ga----~ar~F~t~~~~-----------~~~~~yL~~SpqL 241 (504)
T 1e1o_A 181 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGA----SARPFITHHNA-----------LDLDMYLRIAPEL 241 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECCCCSEESS----CCSS----CCCCCEEEETT-----------TTEEEEECSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEEec----CCCC----cccceEeccCC-----------CCceEEeccCHHH
Confidence 456788899999999999999999999999854 1221 12466664221 1356888854443
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.++..- .=|+|++++|||+|-.
T Consensus 242 ylk~L~v~G-------~~rVyeIg~~FR~E~~ 266 (504)
T 1e1o_A 242 YLKRLVVGG-------FERVFEINRNFRNEGI 266 (504)
T ss_dssp HHHHHHHHT-------CCEEEEEEEEECCCCC
T ss_pred HHHHHhhcC-------CCcEEEEcccccCCCC
Confidence 222222211 2489999999999965
No 52
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=95.62 E-value=0.016 Score=60.32 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++.+.+++++.++||.||.||.|+.... + |.. +.|.+.-. +.++||.-+.+.
T Consensus 242 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~-e--gga-----~~F~v~~~-------------~~~~yL~~Spql 300 (548)
T 3i7f_A 242 AIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS-E--GGS-----NIFEVKYF-------------DRKAYLAQSPQL 300 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSBC----------------------------------------CCBCSCTHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC-C--CCc-----ceeEEecC-------------CCceEeccCHHH
Confidence 45678889999999999999999999999998862 2 222 24544322 235788766554
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc--cCCc-cEEEEE
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL--TKSI-AYRVVN 265 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g--~LgL-pyrvv~ 265 (399)
.+--++..- -=|+|++++|||+|-. .--+ .|..++
T Consensus 301 ~~k~ll~~g-------~~rVfeI~~~FR~E~~~t~RHl~EFtmlE 338 (548)
T 3i7f_A 301 YKQMAIMGD-------FRKVFEVGPVFRAENSNTRRHLTEFEGLD 338 (548)
T ss_dssp HHHHHHTTT-------CCEEEEEEEECCCSCCCSSSCCSCEEEEE
T ss_pred HHHHHHhcC-------cCcEEEEeeeEecCCCCCCCcchhhhchh
Confidence 433333221 1579999999999975 2222 355554
No 53
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=95.55 E-value=0.012 Score=60.12 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++++.++||.||.||.|+.... ++.+ ++|.++-- +.++||.-+.+-
T Consensus 154 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~-eGg~-------~~f~~~~~-------------~~~~~L~~SpqL 212 (456)
T 3m4p_A 154 QVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC-EGGS-------TLFKLQYF-------------NEPAYLTQSSQL 212 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC-------C-------CCCEEEET-------------TEEEEECSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC-CCcc-------cccccccc-------------CCCcccccCHHH
Confidence 46788999999999999999999999999987653 2222 35555432 345778765543
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
. .+..+. .+ =++|++++|||+|-.
T Consensus 213 ~-----lq~l~~--g~-~rVyeig~~FR~E~~ 236 (456)
T 3m4p_A 213 Y-----LESVIA--SL-GKSFCMLSSYRAEQS 236 (456)
T ss_dssp H-----HHTTHH--HH-SSEEEEEEEECCCSC
T ss_pred H-----HHHHHh--cc-CcEEEEEhheecCCC
Confidence 2 222221 12 469999999999963
No 54
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=95.45 E-value=0.036 Score=58.28 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++++..+||.||.||.|..... + |- . + |.+..+. ...++|--|+|=+
T Consensus 136 ~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~-e--GA----r-~-F~v~~~~-----------~~~~~y~L~qSPQ 195 (585)
T 1c0a_A 136 QRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATP-E--GA----R-D-YLVPSRV-----------HKGKFYALPQSPQ 195 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS-S--SS----C-C-CEEECSS-----------STTCEEECCSCSH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC-C--CC----c-c-ceecccc-----------cCCceEeCccCHH
Confidence 35688999999999999999999999999997542 1 21 1 2 5554321 0224542345433
Q ss_pred HHHH-HHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICA-VHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~-l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
-+.. ++..- + =|+|++++|||+|-.
T Consensus 196 l~kq~Lmv~G------~-~rvfqI~~~FR~E~~ 221 (585)
T 1c0a_A 196 LFKQLLMMSG------F-DRYYQIVKCFRDEDL 221 (585)
T ss_dssp HHHHHHHHTT------C-CEEEEEEEEECCCCC
T ss_pred HHHHHHHhcC------C-CceEEEeceeecCCC
Confidence 3333 22221 1 379999999999975
No 55
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=95.36 E-value=0.035 Score=58.28 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++++.++||.||.||.|..... + |- . + |.+..+. ...++|--|+|=+
T Consensus 142 ~~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~-e--GA----r-~-F~v~~~~-----------~~~~~y~L~qSPQ 201 (580)
T 1l0w_A 142 ENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP-E--GA----R-D-FLVPYRH-----------EPGLFYALPQSPQ 201 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS-S--SS----C-C-CEEECTT-----------STTEEEECCSCSH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC-C--CC----C-C-ccccccc-----------cCCceeECccCHH
Confidence 35688899999999999999999999999997532 2 21 1 2 5554321 0124552345533
Q ss_pred HHHHH-HhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAV-HRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l-~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
-+..+ +..- . =|+|++++|||+|-.
T Consensus 202 l~kq~Lmv~G---~----~rvfqI~~~FR~E~~ 227 (580)
T 1l0w_A 202 LFKQMLMVAG---L----DRYFQIARCFRDEDL 227 (580)
T ss_dssp HHHHHHHHTT---C----SEEEEEEEEECCCCC
T ss_pred HHHHHHHHhc---c----CCeEEEeceeeCCCC
Confidence 33332 2221 1 379999999999975
No 56
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=95.31 E-value=0.033 Score=57.75 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++++.++||.||.||.|.... +|- .-..|.+..+. -+.++||.-+.|.
T Consensus 174 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~----gGa----~a~~F~t~~~~-----------~~~~~yL~~SpqL 234 (521)
T 3bju_A 174 QKFIIRSKIITYIRSFLDELGFLEIETPMMNIIP----GGA----VAKPFITYHNE-----------LDMNLYMRIAPEL 234 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----CSS----SCCCCEEEETT-----------TTEEEEECSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC----CCc----cccceeeeccc-----------CCcceEeeCCHHH
Confidence 4567888899999999999999999999998642 221 12345443210 1346888876664
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=.++..-. =|+|++++|||+|-.
T Consensus 235 ~lk~liv~g~-------~rVyeig~~FR~E~~ 259 (521)
T 3bju_A 235 YHKMLVVGGI-------DRVYEIGRQFRNEGI 259 (521)
T ss_dssp HHHHHHHTTC-------CEEEEEEEEECCSCC
T ss_pred HHHHHHhcCc-------CceEEEEcceeCCCC
Confidence 4433332211 379999999999965
No 57
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.11 E-value=0.13 Score=52.95 Aligned_cols=203 Identities=14% Similarity=0.129 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHcCCeEecC-CccccHHHHHHhcCcccc-----cccceEEeccCccC----------------CCCC
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYT-PFFMRKEVMQEVAQLAQF-----DEELYKVIGKGEKV----------------GDSA 206 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~-P~l~~~~l~~~sg~~~~f-----~~~~f~i~~~~~~~----------------~~~~ 206 (399)
.+.+.+-+++.+...||++|.+ |.+.....-...=.+|.. ..+.|.|.+..... +...
T Consensus 227 l~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~~~ 306 (508)
T 3l4g_A 227 LLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYG 306 (508)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTT
T ss_pred HHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccccC
Confidence 3445566778888999999885 655444322111122211 12346675431000 0000
Q ss_pred -C------CCCCCCCeeeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCCc------------------------
Q psy10034 207 -P------EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL------------------------ 255 (399)
Q Consensus 207 -~------~~~~~~~~~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g------------------------ 255 (399)
. .....+..+|+++.=..+...+.......+..|+|++++++|||+|..
T Consensus 307 s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v~f~d 386 (508)
T 3l4g_A 307 SQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGH 386 (508)
T ss_dssp BCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESCCHHH
T ss_pred CccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCCCCHHH
Confidence 0 000002456766654444444432221134679999999999999852
Q ss_pred ----------cCCc-cEEEEEeccCCCCccccceeceeeecCCCcccceEEEecCcchhhhhccccEEeccCCCCCceeE
Q psy10034 256 ----------TKSI-AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEF 324 (399)
Q Consensus 256 ----------~LgL-pyrvv~~~sgdlg~~a~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa~rl~i~y~~~~~~~~~~~~ 324 (399)
.||+ .+|... +- ..+. ...+.+.++.++.++|.||..|.-.---..+.++| + ...+
T Consensus 387 LKg~Le~~l~~lG~~~~rfrp--s~-fPft-ePS~ev~i~~~G~~~W~EIGg~G~vhP~VL~~~Gi---p----e~~~-- 453 (508)
T 3l4g_A 387 LMGVLREFFTKLGITQLRFKP--AY-NPYT-EPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGL---P----ENVS-- 453 (508)
T ss_dssp HHHHHHHHHHTTTCCCCEEEE--CC-CTTC-SSEEEEEECCSTTSSCEEEEEEECCCHHHHGGGTC---C----TTEE--
T ss_pred HHHHHHHHHHHcCCcceEeec--cC-CCCC-CCeEEEEEEECCccceEEEEeeeeEcHHHHHHCCC---C----CCce--
Confidence 4554 233221 11 1111 11223344555555788988875321112344555 1 0112
Q ss_pred EEcccccccchHHHHHHHHHhcCCCCceecCcccccccCCcccCCcccccCccCCCCC
Q psy10034 325 VHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPID 382 (399)
Q Consensus 325 vHtlngt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~~~~~~~~~~~~~~~~~~~~ 382 (399)
..+-|+.++|+... .|+ || -||-+.++.. .+.|+.++|+-
T Consensus 454 ---v~AfgLgLeRLaml---~~g------i~-diR~l~~~~~-----dl~~~~~~~~~ 493 (508)
T 3l4g_A 454 ---VIAWGLSLERPTMI---KYG------IN-NIRELVGHKV-----NLQMVYDSPLC 493 (508)
T ss_dssp ---EEEEEEESHHHHTT---TTT------CS-CGGGTSSTTC-----CHHHHHHCCCT
T ss_pred ---EEEEEecHHHHHHH---HcC------Cc-HHHHHhcCCc-----CHHHHhhCcch
Confidence 22556778887543 233 22 2677766653 57788887763
No 58
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=94.93 E-value=0.016 Score=60.11 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 144 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
.-.++..++++.+++++..+||.||.||.|.... +.+.. ..|.+.... -+.++||.-+.|-
T Consensus 202 ~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~---gGA~a-----~pF~t~~n~-----------~~~~~yL~~SpqL 262 (529)
T 4ex5_A 202 TTFRARTKAIASIRKFMGDADFMEVETPMLHPIP---GGAAA-----KPFVTHHNA-----------LDMEMFLRIAPEL 262 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC---CSSSS-----CCCEEEETT-----------TTEEEEECSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC---CCCcc-----ccccccccc-----------CCcceecccCHHH
Confidence 4568888999999999999999999999998541 11122 234332110 1346788766554
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
.+=-++..- -=|+|++++|||+|-.
T Consensus 263 ylk~L~v~G-------~~rVyeIg~~FR~E~~ 287 (529)
T 4ex5_A 263 YLKRLIVGG-------FERVFEINRNFRNEGV 287 (529)
T ss_dssp HHHHHHHTT-------CSEEEEEEEEECCSCC
T ss_pred HHHHHHhcC-------CCcEEEeehheecCCC
Confidence 433333221 1479999999999965
No 59
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=94.89 E-value=0.07 Score=52.54 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccc-----cccceEEeccCccCCCCCCCCCCCCCeeeeCCCChH
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF-----DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQP 224 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f-----~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~ 224 (399)
..+.+-+++.+...||+||..|.+.....-...-.++.. ..+.|.|.+............ ..+..+|+.+....
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~-~~~~~vLRt~tsp~ 182 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEE-VEGRLLLRTHTSPM 182 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCB-CCSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCcccccccccccc-ccccceeeccchHH
Confidence 345556777788999999999988665321111112211 133466654311000000000 01345788777776
Q ss_pred HHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 225 ICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 225 ~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
+..+... ...|++++++|+|||+|.
T Consensus 183 llr~l~~-----~~~piriFEiGrVFR~d~ 207 (350)
T 1b7y_A 183 QVRYMVA-----HTPPFRIVVPGRVFRFEQ 207 (350)
T ss_dssp HHHHHHH-----CCSSEEEEEEEEEECCCC
T ss_pred HHHHHHh-----cCCCeeEEEeeeEEECCC
Confidence 6665544 367999999999999874
No 60
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=94.53 E-value=0.06 Score=51.61 Aligned_cols=87 Identities=9% Similarity=0.109 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccccc-----ccceEEeccCccCCCCCCCCCCCCCeeeeCCCCh
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFD-----EELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQ 223 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~-----~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~ 223 (399)
...+.+-+++.+...||+||.+|.+.+...-...-.++.-. .+.|.|. +..+|+++-..
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~----------------e~~vLRtsl~p 118 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT----------------DEILMRTHTSP 118 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS----------------SSEEECSSSHH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc----------------CcceeeccCHH
Confidence 34456667778889999999888776653211111112100 0123332 24678888877
Q ss_pred HHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 224 PICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 224 ~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
.+....+... ...|+++++++.|||++.
T Consensus 119 ~ll~~l~~N~---~~~~~riFEiG~Vfr~d~ 146 (294)
T 2rhq_A 119 VQARTMEKRN---GQGPVKIICPGKVYRRDS 146 (294)
T ss_dssp HHHHHHHHTT---TCSCEEEEEEEEEECCCC
T ss_pred HHHHHHHhcC---CCCCccEEEEcCEEecCC
Confidence 7776555433 467999999999999763
No 61
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=94.00 E-value=0.11 Score=54.88 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCC
Q psy10034 144 PAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSE 222 (399)
Q Consensus 144 ~ga~l~~aL~~~~~d~~~-~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE 222 (399)
.-.++..++++.+++++. ++||.||.||.|+... -+++ .-|.+..+. .+..+||.-+.+
T Consensus 146 ~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st-~~GA--------~~F~v~~~~-----------~g~~~~L~qSpq 205 (617)
T 4ah6_A 146 YNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT-PGGA--------KEFLVPSRE-----------PGKFYSLPQSPQ 205 (617)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC-CSSS--------CCCEEECSS-----------TTCEEECCSSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC-CCCC--------cCceecccc-----------CCcccccccCHH
Confidence 356889999999999996 7999999999998742 1221 125554321 134566765444
Q ss_pred hHHHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 223 QPICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 223 ~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
...--++..-. =|+|++++|||+|-.
T Consensus 206 l~kq~l~v~g~-------~rvfqi~~~FR~E~~ 231 (617)
T 4ah6_A 206 QFKQLLMVGGL-------DRYFQVARCYRDEGS 231 (617)
T ss_dssp HHHHHHHHTSC-------SEEEEEEEEECCCSS
T ss_pred HHHHHHHhccc-------CcEEEEEhheecccC
Confidence 33322222211 279999999999965
No 62
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=91.00 E-value=1.4 Score=45.59 Aligned_cols=30 Identities=10% Similarity=0.293 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEV 178 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l 178 (399)
...+.+-+++.+...||+|+.+|.++....
T Consensus 49 ~~~~~~~Ir~~l~~lGF~Ev~~~s~~s~~~ 78 (534)
T 2du3_A 49 LFATIQRLREAYLSIGFSEVVNPLIVEDVH 78 (534)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCCEEETHH
T ss_pred HHHHHHHHHHHHHHCCCEEEeCceEeChhh
Confidence 344556678888999999999999998864
No 63
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=89.87 E-value=2.4 Score=44.02 Aligned_cols=48 Identities=8% Similarity=0.252 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHHH-HHHhcCccc-ccccceEEec
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEV-MQEVAQLAQ-FDEELYKVIG 197 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l-~~~sg~~~~-f~~~~f~i~~ 197 (399)
..+++-+++.+...||+++..|.+....- +...||-.. ..|..|.|.+
T Consensus 60 ~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~ 109 (549)
T 2du7_A 60 METIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAG 109 (549)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEEC
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECC
Confidence 34455677778889999999999976543 334445321 1233677764
No 64
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=89.39 E-value=0.56 Score=49.24 Aligned_cols=91 Identities=10% Similarity=0.080 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHHHH-HHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHH
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEVM-QEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAV 228 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~-~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l 228 (399)
+.+.+-+++.+...||+|+.++.|+..+.. ..-+.... ..+.++|.+. ++.+--+|++|-=+.+...
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~-~~~~v~L~NP-----------is~e~svmRtsLlpgLL~~ 461 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDIS-ATKAVHISNP-----------KTAEFQVARTTLLPGLLKT 461 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTT-SSCCCBBSSC-----------SSGGGSEECSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCC-CCCeEEEcCC-----------CchhHhHHHHHHHHHHHHH
Confidence 445667788899999999999999998743 22222111 1234455432 1122346777765555544
Q ss_pred HhcCcCCCCCcCceeeeeccccccCC
Q psy10034 229 HRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 229 ~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
.+.. .. +..|++++++|.+||.+.
T Consensus 462 l~~N-~~-~~~~vrlFEiG~Vf~~d~ 485 (589)
T 3l4g_B 462 IAAN-RK-MPLPLKLFEISDIVIKDS 485 (589)
T ss_dssp HHHT-TT-SCSCEEEEEEEEEEEECT
T ss_pred HHHH-hc-CCCceEEEEeeeEEecCC
Confidence 3322 22 346999999999998754
No 65
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=89.09 E-value=3.4 Score=43.47 Aligned_cols=48 Identities=8% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHHH-HHHhcCcccc-cccceEEec
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEV-MQEVAQLAQF-DEELYKVIG 197 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l-~~~sg~~~~f-~~~~f~i~~ 197 (399)
..+++-+++.+...||+++..|.+....- +...||-..- .|..|.|.+
T Consensus 68 ~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~ 117 (648)
T 2odr_B 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAG 117 (648)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEB
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECC
Confidence 34455677778889999999999975443 2334442211 223777764
No 66
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=88.89 E-value=3.6 Score=43.39 Aligned_cols=48 Identities=8% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHHH-HHHhcCcccc-cccceEEec
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEV-MQEVAQLAQF-DEELYKVIG 197 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l-~~~sg~~~~f-~~~~f~i~~ 197 (399)
..+++-+++.+...||+++..|.+....- +...||-..- .|..|.|.+
T Consensus 68 ~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~ 117 (665)
T 2odr_A 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAG 117 (665)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEB
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECC
Confidence 33455677778889999999999975443 2334442211 223777764
No 67
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=88.60 E-value=3.9 Score=43.27 Aligned_cols=48 Identities=8% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHHH-HHHhcCcccc-cccceEEec
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEV-MQEVAQLAQF-DEELYKVIG 197 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l-~~~sg~~~~f-~~~~f~i~~ 197 (399)
..+++-+++.+...||+++..|.+....- +...||-..- .|..|.|.+
T Consensus 68 ~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~ 117 (685)
T 2odr_D 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAG 117 (685)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEB
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECC
Confidence 34455677778889999999999975443 2334442211 223777764
No 68
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=87.99 E-value=0.78 Score=41.54 Aligned_cols=90 Identities=8% Similarity=0.142 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHHH
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVH 229 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l~ 229 (399)
+.+.+-+++.|...||+||.+-.++..+.+..-+..+. .+...|.+. ++.+.-+|++|-=+.+....
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~--~~~v~l~NP-----------ls~e~~vmRtsLlpgLL~~~ 73 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPS--KNLVMLLNP-----------LSADLNCMRQTLLFGGLESI 73 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCG--GGCEEBSSG-----------GGCSCCEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCc--CCeEEEeCC-----------cchhHHHHHHHhHHHHHHHH
Confidence 35667778889999999999999999876443322111 234555432 12233478887655555443
Q ss_pred -hcCcCCCCCcCceeeeeccccccCC
Q psy10034 230 -RDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 230 -~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
.|. +...-+++++++|.||+.+.
T Consensus 74 ~~N~--~r~~~~v~lFEiG~Vf~~~~ 97 (213)
T 3ig2_A 74 AHNA--NRKNADLKFFEFGNCYHFDA 97 (213)
T ss_dssp HHC--------CCEEEEEEEEEEECC
T ss_pred HHHh--cCCCCCeeEEEeeeEEecCc
Confidence 332 33333599999999998764
No 69
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=86.96 E-value=5.3 Score=42.33 Aligned_cols=48 Identities=8% Similarity=0.209 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHHH-HHHhcCcccc-cccceEEec
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEV-MQEVAQLAQF-DEELYKVIG 197 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l-~~~sg~~~~f-~~~~f~i~~ 197 (399)
..+++-+++.+...||+++..|.+....- +...||-..- .|..|.|.+
T Consensus 68 ~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~ 117 (701)
T 2odr_C 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAG 117 (701)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECC
Confidence 33455677778889999999999975443 2334442211 233777764
No 70
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=84.96 E-value=0.51 Score=45.92 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccc-----cccceEEeccCccCCCCCCCCCCCCCeeeeCCCChH
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQF-----DEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQP 224 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f-----~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~ 224 (399)
..+.+-+++.+...||+++.+|.+....--...=.++.- ..+.|.|+ +..+|+.+.-..
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~----------------e~~vLRThtsp~ 173 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD----------------TTRLLRTQTSGV 173 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS----------------SSCEECSCTHHH
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC----------------CCceecccCCHH
Confidence 334555677788899999999987543210000001110 01233342 134566554444
Q ss_pred HHHHHhcCcCCCCCcCceeeeeccccccCCc
Q psy10034 225 ICAVHRDSWLPEASLPIRYLGVSTCFRQEDL 255 (399)
Q Consensus 225 ~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~g 255 (399)
+...+. +...|++++++|.|||.+..
T Consensus 174 ~lr~l~-----~~~~pirifeiGrVyR~d~d 199 (327)
T 3pco_A 174 QIRTMK-----AQQPPIRIIAPGRVYRNDYD 199 (327)
T ss_dssp HHHHHT-----TCCSSCCBCCEECCBCSCCB
T ss_pred HHHHHH-----hCCCCeeEEeeccEEecCCC
Confidence 444443 35679999999999998743
No 71
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=83.06 E-value=1.1 Score=40.56 Aligned_cols=90 Identities=7% Similarity=0.060 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHH-
Q psy10034 150 VGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAV- 228 (399)
Q Consensus 150 ~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l- 228 (399)
+.+.+-+++.|...||+||.+-.++..+.+..-+..+. ++...|.+. ++.+--+|++|-=+.+...
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~--~~~v~l~NP-----------ls~e~~vmRtsLlpgLL~~~ 73 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPR--EMAVELMNP-----------LSQELNCMRQTLLFGGLETL 73 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCG--GGCCBCSSB-----------SCSSEEEECSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCc--CCeEEecCC-----------ccHHHHHHHHHhHHHHHHHH
Confidence 45667788889999999999999999875543321111 233344332 2223346777765555543
Q ss_pred HhcCcCCCCCcCceeeeeccccccCC
Q psy10034 229 HRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 229 ~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
-.|.- ...-+++++++|.+|+.+.
T Consensus 74 ~~N~~--r~~~~~~lFEiG~Vf~~~~ 97 (213)
T 3ica_A 74 SHNLR--RKHLSLYLFEWGKCYRFHA 97 (213)
T ss_dssp HHHHT--TTCSEEEEEEEEEEEEEEC
T ss_pred HHHHc--CCCCCeeEEEeeeEEecCC
Confidence 33322 2222499999999998654
No 72
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=74.84 E-value=3.3 Score=44.93 Aligned_cols=89 Identities=9% Similarity=0.015 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCccccccc-ceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEE-LYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICA 227 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~-~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~ 227 (399)
.+.+.+-+++.+...||+|+.+..++..+.+..-+ + ..+ .+.+.+. .+.+.-+|++|-=+.+..
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~--~--~~~~~v~L~NP-----------is~e~svLRtsLlpgLL~ 559 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFA--L--QERPTISLLMP-----------MSEAHATLRQSLLPHLIE 559 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTC--S--SCCCCEECSSC-----------SCTTSSEECSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhC--C--CCCceEEEcCC-----------CchhhhhhhhccHHHHHH
Confidence 45566678888999999999999999887552111 2 233 4556543 112334788776555554
Q ss_pred HHhcCcCCCCCcCceeeeeccccccC
Q psy10034 228 VHRDSWLPEASLPIRYLGVSTCFRQE 253 (399)
Q Consensus 228 l~~~~i~sy~~LPlk~~~~s~~fR~E 253 (399)
..+. .......|++++++|.|||.+
T Consensus 560 ~l~~-N~~r~~~~vrlFEiG~Vf~~d 584 (795)
T 2rhq_B 560 ATAY-NVARKNKDVRLYEIGRVFFGN 584 (795)
T ss_dssp HHHH-HHHTTCCCEEEEEEEEEEECC
T ss_pred HHHH-HhcCCCCCeEEEEEeeEEecC
Confidence 3332 123446799999999999853
No 73
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=68.36 E-value=6 Score=42.84 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHH
Q psy10034 149 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAV 228 (399)
Q Consensus 149 ~~aL~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l 228 (399)
.+.+.+.+++.+...||+|+.+-.++..+.+.. ++. ..+.+.+.+. .+.+.-+|++|-=+.+...
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~---l~~-~~~~v~L~NP-----------is~d~svLRtsLlpgLL~~ 555 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR---FRL-DPPRLLLLNP-----------LAPEKAALRTHLFPGLVRV 555 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHH---TTC-CCCSCEESSC-----------SSTTSSEECSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHh---cCC-CCCeEEEcCC-----------CchhhhhhhhhhHHHHHHH
Confidence 556677788889999999999999998876632 222 2344556543 1223346787765555543
Q ss_pred HhcCcCCCC-CcCceeeeeccccc
Q psy10034 229 HRDSWLPEA-SLPIRYLGVSTCFR 251 (399)
Q Consensus 229 ~~~~i~sy~-~LPlk~~~~s~~fR 251 (399)
.+.. .... ..|++++++|.|||
T Consensus 556 l~~N-~~r~~~~~vrlFEiG~Vf~ 578 (785)
T 1b7y_B 556 LKEN-LDLDRPERALLFEVGRVFR 578 (785)
T ss_dssp HHHH-HHHSCCSCEEEEEEEEEES
T ss_pred HHHH-hhcCCCCCeEEEEEeeeec
Confidence 3321 2233 46999999999999
No 74
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=63.15 E-value=27 Score=27.32 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=39.3
Q ss_pred HHHHHhhCCC----hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10034 20 RKNQKDRFKN----VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (399)
Q Consensus 20 ~~~l~~R~~~----~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~k 69 (399)
+--+++||.. .--+++...|..+...++.+++.|+.+...+.+++...+.
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555532 1237889999999999999999999999999999987654
No 75
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=56.71 E-value=20 Score=35.67 Aligned_cols=86 Identities=8% Similarity=0.084 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHc----CCeEecC-CccccHHHHHHhcCcccc-----cccceEEeccCccCCCCCCCCCCCCCe
Q psy10034 146 VCLQVGLVQYALSKWIEK----GYTPLYT-PFFMRKEVMQEVAQLAQF-----DEELYKVIGKGEKVGDSAPEKDELDDK 215 (399)
Q Consensus 146 a~l~~aL~~~~~d~~~~~----Gy~ev~~-P~l~~~~l~~~sg~~~~f-----~~~~f~i~~~~~~~~~~~~~~~~~~~~ 215 (399)
..+...+.+++....... ||+++.+ |.++...--...=..|.. ..+.|.|+ +..
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~----------------~~~ 114 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLN----------------RTH 114 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSS----------------SSE
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEec----------------CCe
Confidence 444555555444332222 8999998 766654432221112111 12334443 134
Q ss_pred eeeCCCChHHHHHHhcCcCCCCCcCceeeeeccccccCC
Q psy10034 216 YLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 216 ~L~pTsE~~~~~l~~~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
+|+...-...+.+++.. .| ++..+|.|||++.
T Consensus 115 vLRThts~~~~~~l~~~------~~-k~~~~G~VyR~D~ 146 (415)
T 3cmq_A 115 MLRAHTSAHQWDLLHAG------LD-AFLVVGDVYRRDQ 146 (415)
T ss_dssp EECSSGGGGHHHHHHTT------CS-EEEEEEEEECCCC
T ss_pred EEcCCCcHHHHHHHHHC------CC-CEEEeeeEEeccc
Confidence 45443223344444432 36 9999999999874
No 76
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=44.62 E-value=53 Score=33.81 Aligned_cols=57 Identities=11% Similarity=0.269 Sum_probs=37.7
Q ss_pred CCchHHHhccCCCCHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10034 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (399)
Q Consensus 2 MlDi~~ir~~k~~n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~ 66 (399)
|.|++.+|+ .|+.+-...+-.+...+ +.+.+++.++.. .+.+.+..++..+.+.+++
T Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~---~~~~~i~~~k~~~e~dLa~ 57 (536)
T 3err_A 1 MVDLKRLRQ----EPEVFHRAIREKGVALD-LEALLAVDEQLH---KQQEVIADKQMSVKEDLDK 57 (536)
T ss_dssp --CHHHHHS----CHHHHHHHHHHHTCCCC-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred CcchHhhhc----ChHHHHHHHHHhhHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 899999999 89999888877777654 677777775544 4444445555555555544
No 77
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=38.56 E-value=37 Score=36.75 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCeEecCCccccHHHHHHhcCcccccccceEEeccCccCCCCCCCCCCCCCeeeeCCCChHHHHH-Hh
Q psy10034 152 LVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAV-HR 230 (399)
Q Consensus 152 L~~~~~d~~~~~Gy~ev~~P~l~~~~l~~~sg~~~~f~~~~f~i~~~~~~~~~~~~~~~~~~~~~L~pTsE~~~~~l-~~ 230 (399)
+.+.+++.|...||+|+.+-.|+..+....-+ + .++...|.+. .+.+--+|++|-=+.+... -.
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~--~--~~~~v~l~NP-----------is~e~svmRtsLlpgLL~~~~~ 558 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIH--P--GVEALLLPSP-----------ISVEMSAMRLSLWTGLLATVVY 558 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHS--S--SCCCCBCSSC-----------SCSTTCEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhC--C--CCCeEEEcCC-----------CchhHHHHHHHHHHHHHHHHHH
Confidence 34557778899999999999999998876654 1 1233344332 1223346888765555543 33
Q ss_pred cCcCCCCCcCceeeeeccccccCC
Q psy10034 231 DSWLPEASLPIRYLGVSTCFRQED 254 (399)
Q Consensus 231 ~~i~sy~~LPlk~~~~s~~fR~E~ 254 (399)
|. ..+.-+++++++|.+|+...
T Consensus 559 N~--~r~~~~v~lFEiG~Vf~~~~ 580 (795)
T 3pco_B 559 NQ--NRQQNRVRIFESGLRFVPDT 580 (795)
T ss_dssp HH--TSSCCCCEEEEEEEEEEECT
T ss_pred HH--hCCCCCccEEEeeeEEecCC
Confidence 32 33445799999999997643
No 78
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.98 E-value=80 Score=26.43 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10034 32 LVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (399)
Q Consensus 32 ~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~ 67 (399)
+-.+++++..+..++..+++.|+.+.+.+.+++..+
T Consensus 94 lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 94 LKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777788888888888777765
No 79
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.22 E-value=42 Score=23.68 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=19.0
Q ss_pred HhhCCChHhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy10034 24 KDRFKNVELVDKVIE-NDLKWRQFRHKADNFNKFKN 58 (399)
Q Consensus 24 ~~R~~~~~~id~i~~-ld~~~r~l~~~~e~Lr~~rN 58 (399)
..||.+.+-||+.+. +.+.+..+..+..+|+.+..
T Consensus 16 ~~rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 16 SFRGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp ETTEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346877666776543 33444555555555544443
No 80
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.57 E-value=1.8e+02 Score=21.61 Aligned_cols=46 Identities=4% Similarity=0.189 Sum_probs=24.8
Q ss_pred CHHHHHHHHHhhCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10034 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (399)
Q Consensus 15 n~e~v~~~l~~R~~~~~~id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~ 66 (399)
+...++..|++| .++|...|...+.+..++++..++...+..++-+
T Consensus 20 ti~eLq~~L~~K------~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 20 SLRDLQYALQEK------IEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666555 3445555555555555555555555555555443
No 81
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.56 E-value=1.8e+02 Score=24.09 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10034 41 LKWRQFRHKADNFNKFKNLCSKVIGE 66 (399)
Q Consensus 41 ~~~r~l~~~~e~Lr~~rN~~sk~i~~ 66 (399)
+++..+..++++|+..+..+...|..
T Consensus 102 ~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 102 QQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444443
No 82
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.58 E-value=1.7e+02 Score=22.23 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=3.6
Q ss_pred CCCchHHHh
Q psy10034 1 MVLDLDLFR 9 (399)
Q Consensus 1 ~MlDi~~ir 9 (399)
||.++..|-
T Consensus 1 ~~MS~Elle 9 (81)
T 2jee_A 1 MTMSLEVFE 9 (81)
T ss_dssp --CCHHHHH
T ss_pred CCCcHHHHH
Confidence 555555553
No 83
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.67 E-value=1.2e+02 Score=22.74 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10034 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (399)
Q Consensus 33 id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~ 66 (399)
++.|..|.++-+.+..+.+.|+.+...+.+++.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5668888888888888999998888888777654
No 84
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=23.66 E-value=26 Score=33.81 Aligned_cols=82 Identities=18% Similarity=0.228 Sum_probs=53.1
Q ss_pred cceeceeeecCCCcccceEEEecCcchhhh-----------hccccEEeccCCCCCceeEEEcccccccchHHHHHHHHH
Q psy10034 276 AKKLDLEAWFPGSGAFRELVSCSNCLDYQS-----------RRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILE 344 (399)
Q Consensus 276 ~~~ydiE~w~P~~~~~~Ev~s~Snc~Dyqa-----------~rl~i~y~~~~~~~~~~~~vHtlngt~~ai~R~i~allE 344 (399)
-.-+||-+|-|-.+++.|+||+..--|+.+ .|+..-|...- -++ ....|+ |-|++.+|+..-||.
T Consensus 231 gLNGDilvw~~vl~~a~ElSSMGIRVd~~~L~~QL~~~g~~er~~~~yh~~l-l~g--~LP~Ti-GGGIGQSRLcmflL~ 306 (330)
T 12as_A 231 GLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLELEWHQAL-LRG--EMPQTI-GGGIGQSRLTMLLLQ 306 (330)
T ss_dssp CSEEEEEEEETTTTEEEEEEEEEEBCCHHHHHHHHHHHTCTTGGGSHHHHHH-HTT--CSCCEE-EEEEEHHHHHHHHHT
T ss_pred CccceEEEeccccCceeEEecceEEeCHHHHHHHHHHcCCChhhccHHHHHH-HcC--CCCccc-cccccHHHHHHHHhc
Confidence 467899999999999999999976556643 12222222110 011 245666 779999999999998
Q ss_pred hcC-CCC-ceecCcccccc
Q psy10034 345 THQ-TET-GVRIPDCLRKF 361 (399)
Q Consensus 345 ~~q-~~~-gi~iP~~L~py 361 (399)
.-. ++- .-+||+-+.-+
T Consensus 307 k~HIGEVQ~svW~~~~~~~ 325 (330)
T 12as_A 307 LPHIGQVQAGVWPAAVRES 325 (330)
T ss_dssp CSCGGGTSCCCCCHHHHHH
T ss_pred cchhheeecccCCHHHHHH
Confidence 743 221 14677765443
No 85
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.80 E-value=1.4e+02 Score=22.17 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10034 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (399)
Q Consensus 33 id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~ 67 (399)
++.|..|.++...+..+++.|+.+...+..++..+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777888888888777777776654
No 86
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.61 E-value=1.8e+02 Score=22.15 Aligned_cols=36 Identities=6% Similarity=0.033 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10034 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (399)
Q Consensus 33 id~i~~ld~~~r~l~~~~e~Lr~~rN~~sk~i~~~~ 68 (399)
++.|..|.++-..+..+.+.|+.+...+.+++.++.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888888888888999999999999998888764
No 87
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=21.30 E-value=40 Score=33.79 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=21.8
Q ss_pred ccccchHHHHHHHHHhcCCCCceecCc-ccccccC
Q psy10034 330 ATACATTRVICAILETHQTETGVRIPD-CLRKFVP 363 (399)
Q Consensus 330 gt~~ai~R~i~allE~~q~~~gi~iP~-~L~py~~ 363 (399)
|-+++++|++.+|.|+ |+ +|. |++|+..
T Consensus 346 GfaiGieRli~~L~e~-----g~-~p~~~~~p~~V 374 (465)
T 3net_A 346 GISIGLTRLISRLLKA-----GI-LNTLPPTPAQV 374 (465)
T ss_dssp EEEEEHHHHHHHHHHT-----TS-SCCCCSCSCCE
T ss_pred eeeccHHHHHHHHHHc-----CC-CCCcCCCCCeE
Confidence 7788899999999996 33 776 6777654
No 88
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=20.62 E-value=1.2e+02 Score=20.99 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhCCC-----hHhHHHHHHHHH
Q psy10034 16 PEKVRKNQKDRFKN-----VELVDKVIENDL 41 (399)
Q Consensus 16 ~e~v~~~l~~R~~~-----~~~id~i~~ld~ 41 (399)
...+++-|+.||.+ .++|++|.+.+.
T Consensus 10 V~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 10 VVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp HHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 46789999999975 356777766553
No 89
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=20.48 E-value=45 Score=32.52 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=22.3
Q ss_pred ccccchHHHHHHHHHhcCCCCceecCcccccccC
Q psy10034 330 ATACATTRVICAILETHQTETGVRIPDCLRKFVP 363 (399)
Q Consensus 330 gt~~ai~R~i~allE~~q~~~gi~iP~~L~py~~ 363 (399)
|.+++++|++++| |++ |+.||. ++|+..
T Consensus 305 g~~igveRl~~~l-e~~----~~~~p~-~~p~~v 332 (420)
T 1qe0_A 305 GFALSIERLLLAL-EEE----GIELDI-EENLDL 332 (420)
T ss_dssp EEEEEHHHHHHHH-HHT----TCCCCC-CCCCSE
T ss_pred EEEecHHHHHHHH-Hhc----CCCCCC-CCCCeE
Confidence 8899999999987 764 347887 888764
Done!