RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10034
(399 letters)
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
{Thermus thermophilus, strain hb27 [TaxId: 274]}
Length = 311
Score = 155 bits (393), Expect = 7e-45
Identities = 72/318 (22%), Positives = 131/318 (41%), Gaps = 69/318 (21%)
Query: 94 NEDENGIVRTKGDTEVR--KKYSHVDLITMIDGVDSEAGAIVAGGRGYFLKGPAVCLQVG 151
E+ N ++ G HV L+ + + V+G R Y LKG ++
Sbjct: 3 GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELA 61
Query: 152 LVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDE 211
L+++A+ +G+ P+ P + R++ + ++++ +
Sbjct: 62 LLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE-------------- 107
Query: 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFR-------------------- 251
D YL T+E + A+H LP +LP+RY G + FR
Sbjct: 108 -TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFH 166
Query: 252 -------------------------QEDLTKSIA--YRVVNIVSGALNHAAAKKLDLEAW 284
E++ + + YR+V + +G + +++D+E +
Sbjct: 167 KVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVY 226
Query: 285 FPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILE 344
P G +RE SCS LD+Q+RR +RY + ++ + + LN TA AT R++ +LE
Sbjct: 227 LPSEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTALATPRILAMLLE 283
Query: 345 THQTETG-VRIPDCLRKF 361
HQ + G VR+P L +
Sbjct: 284 NHQLQDGRVRVPQALIPY 301
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 56.4 bits (135), Expect = 1e-09
Identities = 34/272 (12%), Positives = 74/272 (27%), Gaps = 64/272 (23%)
Query: 121 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 180
+ID G V G+ ++ L + +++ + + P + ++ +
Sbjct: 15 IIDQRYPVKGMHVWMPHGFMIRK--------NTLKILRRILDRDHEEVLFPLLVPEDELA 66
Query: 181 EVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLP 240
+ A + E+ + G L TSE + + LP
Sbjct: 67 KEAIHVKGFEDEVYWVTHG-------GLSKLQRKLALRPTSETVMYPMFALWVRSHTDLP 119
Query: 241 IRYLGVSTCFRQED-------------------------------------------LTK 257
+R+ V FR E +
Sbjct: 120 MRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSL 179
Query: 258 SIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKK 317
I Y + + + + P ++ + N +R +++ +
Sbjct: 180 GIPYLITRRPPWDKFPGSEYTVAFDTLMPDGK-TLQIGTVHNLGQTFARTFEIKF---ET 235
Query: 318 MNEKIEFVHMLNATACATTRVICAILETHQTE 349
E+VH + RVI +++ H E
Sbjct: 236 PEGDHEYVHQ--TCYGLSDRVIASVIAIHGDE 265
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 291
Score = 56.7 bits (136), Expect = 1e-09
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 11/120 (9%)
Query: 134 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 193
G ++ + +Y + K + GY +YTP ++ + + E+++
Sbjct: 18 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMF 77
Query: 194 KVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 253
+ + DE + L + ++ + LPIR + T R E
Sbjct: 78 PPM-----------QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYE 126
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 53.0 bits (126), Expect = 1e-08
Identities = 30/236 (12%), Positives = 66/236 (27%), Gaps = 53/236 (22%)
Query: 152 LVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDE 211
+ Q + E G+ Y P F+ +++ A+ + V+ A ++
Sbjct: 46 IQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVV-------THAGGEEL 98
Query: 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTC---------------FRQEDLT 256
+ + TSE I + LP F ++
Sbjct: 99 EEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGH 158
Query: 257 KSIAYRVVNIVSGALNHAAAKKLDLE--------------------------AWFPGSGA 290
+ A R + +L E G
Sbjct: 159 TAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGK 218
Query: 291 FRELVSCSNCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETH 346
+ + + +R +++ + + ++++VH + + R I AI+ TH
Sbjct: 219 ALQAGTSHYLGENFARAFDIKF---QDRDLQVKYVHT--TSWGLSWRFIGAIIMTH 269
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 50.8 bits (121), Expect = 8e-08
Identities = 6/75 (8%), Positives = 19/75 (25%), Gaps = 1/75 (1%)
Query: 273 HAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNE-KIEFVHMLNAT 331
+ + ++ + + N D + T + + + V + +
Sbjct: 213 QDELGRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSV 272
Query: 332 ACATTRVICAILETH 346
+ A L
Sbjct: 273 SGDVDLGTLAYLYDS 287
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 50.6 bits (120), Expect = 1e-07
Identities = 33/231 (14%), Positives = 65/231 (28%), Gaps = 56/231 (24%)
Query: 162 EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATS 221
E G+ P + ++++ + A+ + E+ + G + L TS
Sbjct: 51 ESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHG-------GKTQLDVKLALRPTS 103
Query: 222 EQPICAVHRDSWLPEASLPIRYLGVSTCFRQED--------------------------- 254
E PI + + LPI+ + FR E
Sbjct: 104 ETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEE 163
Query: 255 ----------------LTKSIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCS 298
T I Y + A + + FP G ++ +
Sbjct: 164 AENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFP-DGRTMQIATVH 222
Query: 299 NCLDYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTE 349
N S+ + + + ++ + + RVI +I+ H E
Sbjct: 223 NLGQNFSKTFEIIF---ETPTGDKDYAYQ--TCYGISDRVIASIIAIHGDE 268
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 47.6 bits (113), Expect = 1e-07
Identities = 9/69 (13%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 3 LDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
+DL R +PE + +++ ++L + ++ D + ++ + + +N +K
Sbjct: 2 VDLKRLRQ----EPEVFHRAIREKGVALDL-EALLALDREVQELKKRLQEVQTERNQVAK 56
Query: 63 VIGEKMKAK 71
+ + +
Sbjct: 57 RVPKAPPEE 65
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 44.7 bits (105), Expect = 8e-06
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 13/102 (12%)
Query: 152 LVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDE 211
L + SK E Y + PF M + + ++ + + ++ E
Sbjct: 36 LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-------------TSSE 82
Query: 212 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 253
+ + + + LP+R +C R E
Sbjct: 83 NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNE 124
>d2aq2b1 b.40.2.2 (B:2-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 118
Score = 27.5 bits (61), Expect = 1.3
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 28 KNVELVDKVIENDLKWRQFRHKADNFNKFK-NLCSKVIGEKMKAKE 72
V+ VDK + +DL + K N++K K L ++ + +K K +
Sbjct: 35 TKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEV 80
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 138
Score = 27.4 bits (61), Expect = 1.5
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 42 KWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP 73
+ +H +N + F K + + +K P
Sbjct: 106 RVTNMKHAIENIDTFYKEAEKKLIQVLKGDSP 137
>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 184
Score = 28.2 bits (62), Expect = 1.5
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 164 GYTPLYTPFFMRKEVM 179
GY P P+ R EV
Sbjct: 165 GYDPPMKPYGRRNEVW 180
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase
AadK {Bacillus subtilis [TaxId: 1423]}
Length = 135
Score = 27.5 bits (61), Expect = 1.6
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 174 MR--KEVMQEVAQLAQFDEELYKVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRD 231
+R +E+M A DE + V +G + + P D D + D
Sbjct: 1 LRSEQEMMDIFLDFALNDERIRLVTLEGSRTNRNIP-PDNFQDYDISYFVTDVESFKEND 59
Query: 232 SWLPE-ASLPIRYLGVSTCFRQEDLTKSIAYRVV 264
WL + +L +Y ++
Sbjct: 60 QWLEIFGKRIMMQKPEDMELFPPELGNWFSYIIL 93
>d1esfa1 b.40.2.2 (A:1-120) Staphylococcal enterotoxin A, SEA
{Staphylococcus aureus [TaxId: 1280]}
Length = 120
Score = 27.1 bits (60), Expect = 1.7
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 28 KNVELVDKVIENDLKWRQFRHKADNFNKFKN-LCSKVIGEKMKAK 71
+N E D+ +++ + ++ F +N SK I +K K K
Sbjct: 39 ENKESHDQFLQHTILFKGFFTDHSWYNDLLVDFDSKDIVDKYKGK 83
>d1bxta1 b.40.2.2 (A:1-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 119
Score = 26.7 bits (59), Expect = 2.4
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 28 KNVELVDKVIENDLKWRQFRHKADNFNKFK-NLCSKVIGEKMKAK 71
NV +++++DL + K N++ K SK + K K K
Sbjct: 36 TNVRSTGQLLQHDLIFPIKDLKLKNYDSVKTEFNSKDLATKYKNK 80
>d3seba1 b.40.2.2 (A:1-121) Staphylococcal enterotoxin B, SEB
{Staphylococcus aureus [TaxId: 1280]}
Length = 121
Score = 26.1 bits (57), Expect = 3.9
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 28 KNVELVDKVIENDLKWRQFRHKADNFNKFK-NLCSKVIGEKMKAKE 72
NV+ +D+ + DL + K N++ + +K + +K K K
Sbjct: 36 INVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKYKDKY 81
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 26.3 bits (57), Expect = 5.0
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADN-FNKFKNLCSKVIGEK 67
E++ Q R + + D VI+N+ + L S+ + ++
Sbjct: 152 HVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQE 205
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.3 bits (53), Expect = 7.4
Identities = 4/32 (12%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 26 RFKNVELVDKVIENDLKWRQFRHKADNFNKFK 57
R +++ + ++ +++R+ + DN ++
Sbjct: 45 RSFDLQKSEAMLRKHVEFRK-QKDIDNIISWQ 75
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
synthase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 410
Score = 26.3 bits (58), Expect = 8.1
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 15 DPEKVRKNQKDRFKNVELVDK--VIENDLKWRQFRHKADNFNKFK--NLCSKVI 64
P+ + NQ +R N +D+ + KW + + FK N KVI
Sbjct: 179 YPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVI 232
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,502,245
Number of extensions: 71508
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 19
Length of query: 399
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,213,086
Effective search space: 378482832
Effective search space used: 378482832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)