BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10035
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9GMB8|SYSC_BOVIN Serine--tRNA ligase, cytoplasmic OS=Bos taurus GN=SARS PE=2 SV=3
Length = 514
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 69/87 (79%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
MVLDLDLFR +KGGDP +R++Q+ RFK+ LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLNV 87
SK IGEKMK KEPVG+ ++P + LN+
Sbjct: 61 SKTIGEKMKKKEPVGNDESIPEDVLNL 87
>sp|Q6P799|SYSC_RAT Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Sars
PE=1 SV=3
Length = 512
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 67/86 (77%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
MVLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
SK IGEKMK KEPVG+ ++P + LN
Sbjct: 61 SKTIGEKMKKKEPVGEDESIPEDVLN 86
>sp|Q5R9K9|SYSC_PONAB Serine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=SARS PE=2
SV=3
Length = 514
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 66/86 (76%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
MVLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
SK IGEKMK KEPVGD ++P L+
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLS 86
>sp|P49591|SYSC_HUMAN Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1
SV=3
Length = 514
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 66/86 (76%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
MVLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
SK IGEKMK KEPVGD ++P L+
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLS 86
>sp|P26638|SYSC_MOUSE Serine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Sars PE=2
SV=3
Length = 512
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 65/86 (75%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
MVLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
SK IGEKMK KE VGD ++P LN
Sbjct: 61 SKTIGEKMKKKEAVGDDESVPENVLN 86
>sp|Q4R4U9|SYSC_MACFA Serine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=SARS
PE=2 SV=3
Length = 514
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 65/86 (75%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
MVLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
SK IGEKMK KEPV D ++P LN
Sbjct: 61 SKTIGEKMKKKEPVEDDESVPENVLN 86
>sp|Q18678|SYSC_CAEEL Probable serine--tRNA ligase, cytoplasmic OS=Caenorhabditis
elegans GN=srs-2 PE=3 SV=1
Length = 487
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 62/80 (77%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
MVLD+D+FRTEKGG+PE +RK+Q+DRFK+ +LVD+VIE D KWR+ R AD N+ KN
Sbjct: 1 MVLDIDMFRTEKGGNPEIIRKSQQDRFKDPKLVDEVIELDEKWRKERFVADQLNRQKNAI 60
Query: 61 SKVIGEKMKAKEPVGDSSTL 80
SK IGEKMK KEP G ++
Sbjct: 61 SKAIGEKMKKKEPQGTDDSV 80
>sp|O14018|SYSC_SCHPO Serine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC29A4.15 PE=3 SV=1
Length = 450
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD++LF+ EKGG+PE +R++Q+ R +V +VDKVIE +W R + DN NK N
Sbjct: 1 MLDINLFQVEKGGNPEIIRESQRKRGADVGVVDKVIEMYKEWVSLRFELDNTNKSINRVQ 60
Query: 62 KVIGEKMKAKEPVGDSSTL 80
K IG KMKAKE D+S L
Sbjct: 61 KEIGLKMKAKE---DASEL 76
>sp|Q9HGT6|SYSC_CANAL Serine--tRNA ligase, cytoplasmic OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SES1 PE=1 SV=1
Length = 462
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD++ F EKGGDPE ++ +QK R +VELVD++I +W + R D NK N
Sbjct: 1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60
Query: 62 KVIGEKMKAKEPVGD 76
K IG++ KAKE D
Sbjct: 61 KEIGKRFKAKEDAKD 75
>sp|Q39230|SYS_ARATH Serine--tRNA ligase OS=Arabidopsis thaliana GN=At5g27470 PE=2
SV=1
Length = 451
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNK-FKNLC 60
+LD++LFR EKG +PE +R++Q+ RF +VE+VD++I+ D +WRQ + + D+F K F L
Sbjct: 1 MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLN 60
Query: 61 SKVIGEKMK 69
+V K+K
Sbjct: 61 KQVAQLKIK 69
>sp|O81983|SYS_HELAN Serine--tRNA ligase OS=Helianthus annuus PE=2 SV=1
Length = 438
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD++LFR EKGG+PE VR++Q+ R +VE+VD++I+ D +WRQ + + + K N +
Sbjct: 1 MLDINLFREEKGGNPEIVRESQRRRGASVEIVDEIIKLDKEWRQRQFELEQLRKDFNRIN 60
Query: 62 KVIGEKMKAKEPVGDSSTL 80
K E K + GD+S+L
Sbjct: 61 K---EVAKLRISGGDASSL 76
>sp|P07284|SYSC_YEAST Serine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SES1 PE=1 SV=2
Length = 462
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD++ F +KGG+PE +R++QK R +VE+VD++I + W + R + D NK N
Sbjct: 1 MLDINQFIEDKGGNPELIRQSQKARNASVEIVDEIISDYKDWVKTRFELDELNKKFNKLQ 60
Query: 62 KVIGEKMKAKEPVGDSSTLPGE 83
K IG K K KE D+S L E
Sbjct: 61 KDIGLKFKNKE---DASGLLAE 79
>sp|Q7KWQ2|SYSC_DICDI Serine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=serS PE=1 SV=1
Length = 451
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
M LD+ LFR +KGG+P+ +R++QK R+ NV+ V +VI+ D ++ +++ DN N
Sbjct: 1 MGLDIVLFRADKGGNPDLIRQSQKVRYANVDAVQEVIDLDKVVKETKYRLDNTNAEYAKL 60
Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
+K + K KA E D E LN
Sbjct: 61 NKSVAMKKKAGES-ADEIIAQAEELN 85
>sp|P13642|SYSC_RABIT Serine--tRNA ligase, cytoplasmic (Fragment) OS=Oryctolagus
cuniculus GN=SARS PE=1 SV=1
Length = 39
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIEND 40
VLDLDLFR +KGGDP +R+ Q+ RFK+ LVD++++ D
Sbjct: 1 VLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKAD 39
>sp|B9E909|SYS_MACCJ Serine--tRNA ligase OS=Macrococcus caseolyticus (strain JCSC5402)
GN=serS PE=3 SV=1
Length = 423
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD+ LFRTE PE V+K + R + +VD+++E D+ R+ + + +N S
Sbjct: 1 MLDIKLFRTE----PEFVKKKLEMRAIDTSIVDEILELDIAARELTARTEELKAKRNKTS 56
Query: 62 KVIGEKMKAKEPVGDS 77
+ I +K + KE D+
Sbjct: 57 EEIAQKKRNKENADDA 72
>sp|Q2NEU9|SYS_METST Serine--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM
3091) GN=serS PE=3 SV=1
Length = 424
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD+ LFR E P K+ ++K RF++ V+KVIE D WR+ +N KN S
Sbjct: 1 MLDIKLFREE----PNKIFDSEKKRFRDTINVEKVIEYDNLWREGLQNLNNLRSEKNKLS 56
Query: 62 KVIGEKMK 69
K + K
Sbjct: 57 KSFKQAKK 64
>sp|B6YWW5|SYS_THEON Serine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=serS PE=3 SV=1
Length = 457
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 2 VLDLDLFRTEKGGDPEKVRKN--QKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD+ L R +P+ V+ + ++ + ++ +D+++E D KWR+ K + K +N
Sbjct: 1 MLDIKLIRE----NPDLVKGDLIKRGEIEKIKWIDEILELDKKWRENLRKINQLRKERNQ 56
Query: 60 CSKVIGEKMKAKEPVGD 76
+ IG++ KA EP+ D
Sbjct: 57 LAVQIGKRKKAGEPIDD 73
>sp|C5A226|SYS_THEGJ Serine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=serS PE=3 SV=1
Length = 455
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 2 VLDLDLFRTEKGGDPEKVRKN--QKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD+ L R + PE V+K+ ++ + V+ +D+++E D KWR+ K + K +N
Sbjct: 1 MLDIKLIREK----PELVKKDLIKRGETEKVKWIDEILELDRKWRENLKKINQLRKERNQ 56
Query: 60 CSKVIGEKMKAKEPVGD 76
+ IG++ KA EP+ D
Sbjct: 57 LAVQIGKRKKAGEPIED 73
>sp|Q4A172|SYS_STAS1 Serine--tRNA ligase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=serS
PE=3 SV=1
Length = 427
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD+ LFR DPE +++ R + ++VD+V+E D + RQ +A+ +N S
Sbjct: 1 MLDIKLFRN----DPEFLKEKVAKRGMDSKVVDEVLELDEQRRQLISQAEEMKAERNKVS 56
Query: 62 KVIGEKMKAKEPVGDS 77
I +K + KE D+
Sbjct: 57 GEIAQKKRNKEDADDA 72
>sp|B1Y9Y4|SYS_PYRNV Serine--tRNA ligase OS=Pyrobaculum neutrophilum (strain DSM 2338
/ JCM 9278 / V24Sta) GN=serS PE=3 SV=1
Length = 447
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
+P+ VRK R +V LVD+ IE D +WRQ + + D + N S+
Sbjct: 12 NPDHVRKVLAARRLDVSLVDRFIELDGRWRQLKREVDELRRSYNQLSR 59
>sp|A9A4V3|SYS_NITMS Serine--tRNA ligase OS=Nitrosopumilus maritimus (strain SCM1)
GN=serS PE=3 SV=1
Length = 421
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 16 PEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVG 75
P+ +R K R + +L D +IE+D K R+F K D F K +N I +K KA E
Sbjct: 11 PQVIRDMLKARAVDFDL-DGLIESDQKRREFIIKTDEFKKRRNEIGNEIAQKKKAGE--- 66
Query: 76 DSSTLPGETLNVCWSVLK 93
D+ST+ E NV + K
Sbjct: 67 DTSTILDEMKNVSAELAK 84
>sp|Q970Y4|SYS_SULTO Serine--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=serS PE=3 SV=1
Length = 453
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKE 72
+P+K+++ K RF +V LVD+ +E D KWRQ + + N+ S I K K +E
Sbjct: 12 NPDKLKEYIKRRFIDVSLVDRAVELDKKWRQTLQEVEKLRHEHNVISSSI-PKAKPEE 68
>sp|Q5JE75|SYS_PYRKO Serine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=serS PE=3 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVEL--VDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD+ L R +PE V+++ R + +L +D+++E D KWR+ K + K +N
Sbjct: 1 MLDIKLIRE----NPEIVKRDLIKRGETEKLKWIDEILELDKKWRENLKKINQLRKERNQ 56
Query: 60 CSKVIGEKMKAKEPVGD 76
+ IG++ KA EP+ D
Sbjct: 57 LAVQIGKRKKAGEPIDD 73
>sp|Q4J8I4|SYS_SULAC Serine--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=serS PE=3 SV=1
Length = 458
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 5 LDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVI 64
L+L R +PE +++N K RF + VDK +E D KWRQ + + NL S I
Sbjct: 6 LELIR----NNPEVLKENLKRRFIDTSTVDKAVELDKKWRQTLQEVERLRHEHNLISSQI 61
>sp|C3MW57|SYS_SULIM Serine--tRNA ligase OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=serS PE=3 SV=1
Length = 457
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 K 71
K
Sbjct: 72 K 72
>sp|C3NEQ7|SYS_SULIY Serine--tRNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 /
Yellowstone #1) GN=serS PE=3 SV=1
Length = 457
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 K 71
K
Sbjct: 72 K 72
>sp|C3NGY7|SYS_SULIN Serine--tRNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 /
Yellowstone #2) GN=serS PE=3 SV=1
Length = 457
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 K 71
K
Sbjct: 72 K 72
>sp|C3MQH9|SYS_SULIL Serine--tRNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 /
Lassen #1) GN=serS PE=3 SV=1
Length = 457
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 K 71
K
Sbjct: 72 K 72
>sp|C4KHR4|SYS_SULIK Serine--tRNA ligase OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=serS PE=3 SV=1
Length = 457
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 K 71
K
Sbjct: 72 K 72
>sp|C3N6A0|SYS_SULIA Serine--tRNA ligase OS=Sulfolobus islandicus (strain M.16.27)
GN=serS PE=3 SV=1
Length = 457
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS----KVIGEKMKA 70
+PE+++ N K R +V LVDK +E D KWRQ + + N+ S K+ GE+ K
Sbjct: 12 NPEELKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVERLRHQHNVLSSQIPKLSGEERKK 71
Query: 71 K 71
K
Sbjct: 72 K 72
>sp|O33780|SYS_SULSO Serine--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092
/ DSM 1617 / JCM 11322 / P2) GN=serS PE=3 SV=2
Length = 457
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNF----NKFKNLCSKVIGEKMKA 70
+PE ++ N K R +V LVDK +E D KWRQ + + N + SK+ GE+ K
Sbjct: 12 NPEDLKNNLKRRAIDVSLVDKAVELDKKWRQVLQEVEKLRHQHNVLSSQISKLSGEERKK 71
Query: 71 K 71
K
Sbjct: 72 K 72
>sp|O28244|SYS_ARCFU Serine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serS
PE=3 SV=1
Length = 453
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66
+PE + ++Q+ R +V++VD+ IE D KWR+ + + K +N ++ + E
Sbjct: 11 NPEILYESQRRRGLSVDIVDRAIELDRKWREELKRVNQLRKRRNELARAVKE 62
>sp|C4LGQ1|SYS_CORK4 Serine--tRNA ligase OS=Corynebacterium kroppenstedtii (strain DSM
44385 / CCUG 35717) GN=serS PE=3 SV=1
Length = 423
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP 73
DP++VR++Q+ R ++ LVD++++ D R+ AD +K +G+KM+ P
Sbjct: 10 DPDRVRESQRTRGEDPGLVDQLLQADQARREAISAADATRAEHKAYTKSMGKKMRDASP 68
>sp|Q8CU95|SYS_STAES Serine--tRNA ligase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=serS PE=3 SV=1
Length = 428
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD+ LFR E PEKV+ + R + ++VD+V+E D + R+ K + +N S
Sbjct: 1 MLDIRLFRNE----PEKVKSKIELRGDDPKVVDQVLELDEQRRELISKTEEMKAKRNKVS 56
Query: 62 KVIGEKMKAKEPVGD 76
+ I +K + KE D
Sbjct: 57 EEIAQKKRNKEDADD 71
>sp|Q5HK07|SYS_STAEQ Serine--tRNA ligase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=serS PE=3 SV=1
Length = 428
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD+ LFR E PEKV+ + R + ++VD+V+E D + R+ K + +N S
Sbjct: 1 MLDIRLFRNE----PEKVKSKIELRGDDPKVVDQVLELDEQRRELISKTEEMKAKRNKVS 56
Query: 62 KVIGEKMKAKEPVGD 76
+ I +K + KE D
Sbjct: 57 EEIAQKKRNKEDADD 71
>sp|A3MX52|SYS_PYRCJ Serine--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM 11548
/ VA1) GN=serS PE=3 SV=1
Length = 454
Score = 35.8 bits (81), Expect = 0.080, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 16 PEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
PE+VRK R + LVDK + D KWRQ + + D N S+
Sbjct: 13 PEEVRKVLLARRVDASLVDKFLALDAKWRQLKKEIDELRHLYNQLSR 59
>sp|B9DPW5|SYS_STACT Serine--tRNA ligase OS=Staphylococcus carnosus (strain TM300)
GN=serS PE=3 SV=1
Length = 428
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LD+ LFR E P+ ++ K R + ++VD+V+E D K R+ KA+ +N S
Sbjct: 1 MLDIKLFRNE----PDYLKGKVKLRGMDPKVVDEVLELDGKRRELIGKAEEMKAERNRVS 56
Query: 62 KVIGEKMKAKEPVGD 76
I EK + KE D
Sbjct: 57 NEIAEKKRNKEDADD 71
>sp|A1RRX4|SYS_PYRIL Serine--tRNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 /
JCM 9189) GN=serS PE=3 SV=1
Length = 448
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
+P+ V+K R + LVDK +E D KWRQ + + D N SK
Sbjct: 12 NPDYVKKVLTARRLDTSLVDKFLELDKKWRQLKKEVDELRHVYNQLSK 59
>sp|Q8U1K2|SYS_PYRFU Serine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=serS PE=3 SV=1
Length = 455
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDR--FKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59
+LD++L R +PE V+ + K R + +D+++ D +WR+ + + +N
Sbjct: 1 MLDINLIRN----NPELVKNDLKKRGELDKIAWIDEILRLDEEWRKKLKEINRLRHERNK 56
Query: 60 CSKVIGEKMKAKEPVGD 76
+ IG++ KA EPV D
Sbjct: 57 IAIEIGKRKKAGEPVED 73
>sp|A0R638|SYS_MYCS2 Serine--tRNA ligase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=serS PE=1 SV=1
Length = 417
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++DL L R +P+ VR +Q+ R ++ LVD ++ D R ADN + S
Sbjct: 1 MIDLRLLRE----NPDIVRASQRARGEDPALVDALLAADTARRSAVSAADNLRAEQKAAS 56
Query: 62 KVIGEKMKAKEP 73
K++G+ + P
Sbjct: 57 KLVGKASPDERP 68
>sp|B9LQZ7|SYS_HALLT Serine--tRNA ligase OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=serS PE=3
SV=1
Length = 456
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66
+PE VR+ ++ +V+L D++++ D +WR+ + + D+ +N S IGE
Sbjct: 10 NPEVVREALDNKGVDVDL-DRILDVDEEWRELKSRGDDLRHERNEVSSTIGE 60
>sp|B1L5G0|SYS_KORCO Serine--tRNA ligase OS=Korarchaeum cryptofilum (strain OPF8)
GN=serS PE=3 SV=1
Length = 456
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVI 64
DPE +R+N + RF ++++++ IE D KWR+ + ++ + +N ++ I
Sbjct: 12 DPEILRENLRRRFLPLDMLERAIELDRKWREAVTELNSLRERRNEINRSI 61
>sp|Q46F20|SYS_METBF Serine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=serS1 PE=1 SV=2
Length = 423
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
+LDL R+ P+ VR +R + EL+D ++E D+ WR+ + D +N+ +
Sbjct: 1 MLDLKFVRSS----PDIVRHALINRNMSTELIDSLLEYDIAWRKCLTEGDELKHKRNVVT 56
Query: 62 KVIGEKMK 69
+ I + K
Sbjct: 57 REIAKLKK 64
>sp|Q6NEN2|SYS_CORDI Serine--tRNA ligase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=serS PE=3 SV=1
Length = 419
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++DL L R +P+ VR++Q+ R ++ LVD+++E D K R+ AD+
Sbjct: 1 MIDLKLLRE----NPDVVRESQRIRGEDPALVDQLLEADEKRREAIKSADDLRAEH---- 52
Query: 62 KVIGEKMKAKEPVGDSSTLPG 82
K G+K+ P + L G
Sbjct: 53 KAFGKKISQASPEERPALLEG 73
>sp|Q8ZTP4|SYS_PYRAE Serine--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC 51768
/ IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=serS PE=3
SV=1
Length = 451
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 16 PEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
P+ VRK R + LVDK +E D KWR+ + + D N SK
Sbjct: 13 PDVVRKVLTARRMDASLVDKFLELDEKWRRLKKEVDELRHEYNKLSK 59
>sp|Q9HNJ8|SYS_HALSA Serine--tRNA ligase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=serS PE=3 SV=2
Length = 460
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 16 PEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK------ 69
PEKVR + + +L D+++E D +WR+ + + D +N S IGE +
Sbjct: 11 PEKVRDALDAKGVDADL-DRILEVDEEWRELKARGDELRHDRNEVSSKIGELKQAGDEDA 69
Query: 70 AKEPVGDSSTLPGETLNV 87
A+E + S L E +V
Sbjct: 70 AQEAIERSQALKDELADV 87
>sp|B0R6Z8|SYS_HALS3 Serine--tRNA ligase OS=Halobacterium salinarum (strain ATCC 29341
/ DSM 671 / R1) GN=serS PE=3 SV=1
Length = 460
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 16 PEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK------ 69
PEKVR + + +L D+++E D +WR+ + + D +N S IGE +
Sbjct: 11 PEKVRDALDAKGVDADL-DRILEVDEEWRELKARGDELRHDRNEVSSKIGELKQAGDEDA 69
Query: 70 AKEPVGDSSTLPGETLNV 87
A+E + S L E +V
Sbjct: 70 AQEAIERSQALKDELADV 87
>sp|Q9ZBX1|SYS_STRCO Serine--tRNA ligase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=serS PE=3 SV=1
Length = 425
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++DL L R DP++VR +Q+ R ++V LVD ++ D + R + D +
Sbjct: 1 MIDLRLLRE----DPDRVRASQRARGEDVALVDSLLSADERRRSSGVRFDELRAEQKGLG 56
Query: 62 KVIGE 66
K+IG+
Sbjct: 57 KLIGK 61
>sp|A0PX13|SYS_MYCUA Serine--tRNA ligase OS=Mycobacterium ulcerans (strain Agy99)
GN=serS PE=3 SV=1
Length = 419
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++DL L R DP+ VR++Q R ++ LVD ++ D R AD+ + S
Sbjct: 1 MIDLKLLRE----DPDVVRRSQLSRGEDPALVDALLTADTARRTAISTADSLRAEQKAAS 56
Query: 62 KVIGEKMKAKEP 73
K +G + P
Sbjct: 57 KSVGGASPEERP 68
>sp|A7HN78|SYS_FERNB Serine--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=serS PE=3 SV=1
Length = 426
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
++DL L R DP+ + K R + +++D+++ D +WR + +N +N S
Sbjct: 1 MIDLKLLRK----DPQHFYEALKKRNYSTDIIDEIVNLDKEWRNQLNIVNNLKAKRNELS 56
Query: 62 KVI------GEKMKAKEPVGDSSTLPGE 83
K++ G+ +A+E + +S + E
Sbjct: 57 KLVARYKAEGKNQEAEEIIAESKKIGEE 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,394,395
Number of Sequences: 539616
Number of extensions: 1600565
Number of successful extensions: 4836
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 4754
Number of HSP's gapped (non-prelim): 126
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)