Query psy10035
Match_columns 102
No_of_seqs 124 out of 1037
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 16:11:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02403 Seryl_tRNA_N: Seryl-t 99.8 7.2E-20 1.6E-24 123.5 6.9 81 2-86 1-85 (108)
2 PLN02678 seryl-tRNA synthetase 99.7 2.4E-16 5.2E-21 129.8 8.5 84 2-85 1-88 (448)
3 TIGR00414 serS seryl-tRNA synt 99.6 1E-15 2.2E-20 124.5 7.9 82 2-87 1-88 (418)
4 PRK05431 seryl-tRNA synthetase 99.6 6.1E-15 1.3E-19 120.2 7.6 80 2-86 1-84 (425)
5 PLN02320 seryl-tRNA synthetase 99.5 1.2E-13 2.6E-18 115.3 7.5 66 2-73 66-131 (502)
6 COG0172 SerS Seryl-tRNA synthe 99.4 3.9E-13 8.5E-18 110.5 8.5 68 2-73 1-68 (429)
7 KOG2509|consensus 99.2 7.1E-11 1.5E-15 97.3 7.2 65 1-65 1-65 (455)
8 PRK14127 cell division protein 88.5 1.8 3.9E-05 29.9 5.6 59 1-67 4-63 (109)
9 PF05103 DivIVA: DivIVA protei 73.4 1.8 4E-05 29.1 1.1 43 26-68 16-59 (131)
10 cd04766 HTH_HspR Helix-Turn-He 71.3 24 0.00052 22.5 6.2 35 22-56 52-87 (91)
11 KOG3119|consensus 70.0 24 0.00051 27.5 6.8 57 15-71 202-259 (269)
12 PF10752 DUF2533: Protein of u 67.5 28 0.00062 23.1 5.7 41 32-72 17-65 (84)
13 KOG4196|consensus 66.0 35 0.00075 24.6 6.3 49 20-68 56-108 (135)
14 PF03280 Lipase_chap: Proteoba 65.1 42 0.00091 24.7 7.0 49 12-61 120-168 (195)
15 KOG3863|consensus 64.5 44 0.00095 29.5 7.8 54 33-99 510-563 (604)
16 COG1936 Predicted nucleotide k 62.9 7 0.00015 29.3 2.4 22 8-33 89-110 (180)
17 PF14257 DUF4349: Domain of un 57.1 52 0.0011 24.9 6.4 34 32-65 160-193 (262)
18 PRK01294 lipase chaperone; Pro 56.6 60 0.0013 26.2 7.0 49 12-61 246-294 (336)
19 cd01279 HTH_HspR-like Helix-Tu 55.8 55 0.0012 21.4 5.7 36 22-57 52-88 (98)
20 PF07106 TBPIP: Tat binding pr 52.8 25 0.00054 25.0 3.8 39 33-71 71-109 (169)
21 PRK05560 DNA gyrase subunit A; 52.1 73 0.0016 28.6 7.4 62 5-69 389-451 (805)
22 PRK13979 DNA topoisomerase IV 50.8 51 0.0011 30.4 6.3 62 5-69 405-467 (957)
23 TIGR01061 parC_Gpos DNA topois 50.6 1.3E+02 0.0029 26.8 8.7 33 5-39 386-419 (738)
24 PF04977 DivIC: Septum formati 50.0 56 0.0012 19.7 5.6 35 33-67 16-50 (80)
25 TIGR01063 gyrA DNA gyrase, A s 49.5 87 0.0019 28.2 7.4 59 5-66 386-445 (800)
26 PF03564 DUF1759: Protein of u 48.8 81 0.0018 21.3 6.2 73 14-86 54-135 (145)
27 COG5185 HEC1 Protein involved 48.0 95 0.0021 27.1 7.1 57 5-68 346-402 (622)
28 cd04765 HTH_MlrA-like_sg2 Heli 45.0 74 0.0016 20.9 5.0 16 23-38 54-69 (99)
29 PF13093 FTA4: Kinetochore com 44.7 68 0.0015 24.3 5.3 53 31-87 146-203 (213)
30 smart00830 CM_2 Chorismate mut 44.2 55 0.0012 19.9 4.0 19 52-70 13-31 (79)
31 PF12325 TMF_TATA_bd: TATA ele 43.7 32 0.0007 23.9 3.1 10 77-86 98-107 (120)
32 PF14735 HAUS4: HAUS augmin-li 43.0 51 0.0011 25.5 4.4 59 33-91 170-232 (238)
33 PRK11546 zraP zinc resistance 43.0 78 0.0017 22.8 5.1 58 33-90 46-104 (143)
34 PF02631 RecX: RecX family; I 42.8 99 0.0021 20.5 6.1 23 16-38 45-67 (121)
35 cd00187 TOP4c DNA Topoisomeras 42.5 1.3E+02 0.0028 25.4 7.0 51 19-70 377-427 (445)
36 PF01817 CM_2: Chorismate muta 41.3 85 0.0018 19.3 5.1 25 47-71 8-32 (81)
37 COG0188 GyrA Type IIA topoisom 40.0 1E+02 0.0022 28.1 6.3 83 5-90 393-477 (804)
38 PF05278 PEARLI-4: Arabidopsis 38.9 1.9E+02 0.0041 23.1 7.1 60 3-66 166-225 (269)
39 KOG3831|consensus 38.8 18 0.00039 27.0 1.3 12 83-94 90-101 (196)
40 COG4915 XpaC 5-bromo-4-chloroi 38.4 1.5E+02 0.0033 22.7 6.2 18 4-25 69-86 (204)
41 PF03962 Mnd1: Mnd1 family; I 37.7 1E+02 0.0022 22.8 5.1 36 34-69 62-97 (188)
42 PF06124 DUF960: Staphylococca 37.5 25 0.00055 23.4 1.8 20 77-96 9-28 (94)
43 PF11285 DUF3086: Protein of u 37.0 97 0.0021 24.8 5.2 33 34-66 4-36 (283)
44 PRK00888 ftsB cell division pr 36.8 1.3E+02 0.0028 20.2 5.7 35 34-68 27-61 (105)
45 PRK00117 recX recombination re 36.6 98 0.0021 21.5 4.8 24 16-39 78-101 (157)
46 PF06238 Borrelia_lipo_2: Borr 35.2 66 0.0014 22.3 3.5 25 49-73 86-110 (111)
47 PRK10869 recombination and rep 34.9 2.9E+02 0.0063 23.6 8.7 69 15-83 138-213 (553)
48 PRK14127 cell division protein 34.8 1.5E+02 0.0033 20.3 7.2 50 12-67 21-70 (109)
49 COG1340 Uncharacterized archae 34.5 2.5E+02 0.0053 22.7 7.3 67 32-98 53-130 (294)
50 TIGR02263 benz_CoA_red_C benzo 33.2 1.4E+02 0.003 24.1 5.7 51 5-59 137-190 (380)
51 COG3883 Uncharacterized protei 32.1 1.7E+02 0.0037 23.2 5.9 33 34-66 59-91 (265)
52 cd00632 Prefoldin_beta Prefold 32.0 1.5E+02 0.0032 19.4 5.1 28 39-66 68-95 (105)
53 PF03357 Snf7: Snf7; InterPro 30.8 1.6E+02 0.0035 20.1 5.1 37 35-71 2-38 (171)
54 PF05400 FliT: Flagellar prote 30.7 1.2E+02 0.0027 18.1 5.0 30 32-61 45-75 (84)
55 PF08172 CASP_C: CASP C termin 30.7 1.8E+02 0.0039 22.5 5.7 40 19-63 83-122 (248)
56 PRK09343 prefoldin subunit bet 30.1 1.8E+02 0.0039 19.8 5.5 47 7-59 64-110 (121)
57 PRK12758 DNA topoisomerase IV 29.9 3.5E+02 0.0076 25.1 8.1 20 6-27 376-395 (869)
58 PF11334 DUF3136: Protein of u 29.8 29 0.00063 22.0 1.0 42 52-100 5-46 (64)
59 cd04790 HTH_Cfa-like_unk Helix 29.5 2.2E+02 0.0047 20.5 8.1 46 21-66 52-106 (172)
60 PF08317 Spc7: Spc7 kinetochor 29.5 1.2E+02 0.0026 23.9 4.7 54 35-88 231-289 (325)
61 PF04282 DUF438: Family of unk 29.3 1E+02 0.0022 19.7 3.5 30 11-41 10-39 (71)
62 smart00265 BH4 BH4 Bcl-2 homol 29.3 77 0.0017 16.7 2.4 24 1-30 1-24 (27)
63 PRK11199 tyrA bifunctional cho 28.9 1.2E+02 0.0027 24.3 4.7 73 1-91 1-85 (374)
64 PRK15396 murein lipoprotein; P 28.6 31 0.00068 22.4 1.0 48 38-91 29-76 (78)
65 COG3599 DivIVA Cell division i 28.6 2.7E+02 0.0058 21.2 7.2 45 24-68 19-64 (212)
66 PF07739 TipAS: TipAS antibiot 28.0 37 0.0008 22.0 1.3 42 48-89 28-71 (118)
67 COG3879 Uncharacterized protei 27.4 2.3E+02 0.0051 22.3 5.8 35 34-68 50-84 (247)
68 PF09006 Surfac_D-trimer: Lung 27.3 1.4E+02 0.0031 17.7 4.0 25 45-69 3-27 (46)
69 PF13805 Pil1: Eisosome compon 27.2 3.2E+02 0.007 21.7 7.0 35 38-72 128-162 (271)
70 PF13863 DUF4200: Domain of un 26.6 2E+02 0.0042 19.0 7.3 12 88-99 110-121 (126)
71 COG1340 Uncharacterized archae 26.6 62 0.0013 26.0 2.6 34 38-71 45-78 (294)
72 PF07889 DUF1664: Protein of u 26.6 2.1E+02 0.0045 20.2 5.0 21 39-59 59-79 (126)
73 TIGR01062 parC_Gneg DNA topois 26.2 3.6E+02 0.0077 24.4 7.4 58 5-68 386-444 (735)
74 PF11929 DUF3447: Domain of un 26.0 1.1E+02 0.0024 18.8 3.2 17 12-28 15-31 (76)
75 smart00338 BRLZ basic region l 25.5 1.6E+02 0.0034 17.5 5.7 37 33-69 25-61 (65)
76 PF12443 AKNA: AT-hook-contain 25.4 66 0.0014 22.2 2.2 36 31-66 42-77 (106)
77 PRK05892 nucleoside diphosphat 25.1 1.7E+02 0.0037 21.0 4.5 31 41-71 11-41 (158)
78 cd04789 HTH_Cfa Helix-Turn-Hel 25.1 2E+02 0.0044 18.7 6.1 44 21-64 51-94 (102)
79 PRK14136 recX recombination re 24.9 2.8E+02 0.006 22.5 6.0 24 16-39 228-251 (309)
80 COG4026 Uncharacterized protei 24.8 3.1E+02 0.0067 21.8 6.1 34 36-69 144-177 (290)
81 TIGR02338 gimC_beta prefoldin, 24.8 2.1E+02 0.0047 18.9 5.2 24 41-64 81-104 (110)
82 cd01282 HTH_MerR-like_sg3 Heli 24.6 2.2E+02 0.0047 18.8 6.7 16 23-38 52-67 (112)
83 smart00787 Spc7 Spc7 kinetocho 24.5 2.6E+02 0.0057 22.3 5.8 54 33-86 224-282 (312)
84 PF06005 DUF904: Protein of un 24.3 67 0.0015 20.4 2.0 22 43-64 41-62 (72)
85 PRK07075 isochorismate-pyruvat 23.6 2.3E+02 0.0049 18.8 6.8 24 48-71 22-45 (101)
86 PRK09239 chorismate mutase; Pr 22.7 2.5E+02 0.0053 18.8 6.8 29 42-70 18-46 (104)
87 COG5118 BDP1 Transcription ini 22.1 5.1E+02 0.011 22.2 7.2 59 4-63 403-470 (507)
88 PF14076 DUF4258: Domain of un 22.0 1.4E+02 0.003 17.5 3.0 21 17-37 4-24 (73)
89 cd00592 HTH_MerR-like Helix-Tu 21.9 2.2E+02 0.0048 17.9 4.9 39 23-61 52-97 (100)
90 PRK14135 recX recombination re 21.9 1.2E+02 0.0025 22.9 3.2 23 16-38 125-147 (263)
91 PRK05561 DNA topoisomerase IV 21.7 5.6E+02 0.012 23.0 7.8 57 5-67 399-456 (742)
92 PF11020 DUF2610: Domain of un 21.6 71 0.0015 21.2 1.7 20 6-25 36-56 (82)
93 PF03962 Mnd1: Mnd1 family; I 21.6 1.7E+02 0.0036 21.6 3.9 29 41-69 103-131 (188)
94 COG3883 Uncharacterized protei 21.4 1.2E+02 0.0027 24.0 3.3 33 35-67 39-71 (265)
95 TIGR02977 phageshock_pspA phag 21.1 3.5E+02 0.0076 20.0 8.1 45 14-58 82-137 (219)
96 PF09766 FimP: Fms-interacting 21.0 2E+02 0.0044 23.2 4.6 28 40-67 100-127 (355)
97 COG5493 Uncharacterized conser 21.0 4.1E+02 0.0088 20.7 6.9 49 15-66 14-64 (231)
98 COG2137 OraA Uncharacterized p 20.9 2.8E+02 0.006 20.4 4.9 26 15-40 86-111 (174)
99 KOG0995|consensus 20.8 6E+02 0.013 22.5 7.7 48 15-65 316-363 (581)
100 PF09304 Cortex-I_coil: Cortex 20.6 3E+02 0.0065 19.0 5.3 29 39-67 35-63 (107)
101 COG1605 PheA Chorismate mutase 20.5 2.6E+02 0.0057 18.3 6.1 25 46-70 20-44 (101)
102 PRK07857 hypothetical protein; 20.4 2.9E+02 0.0064 18.9 6.3 38 33-70 27-64 (106)
103 PF13600 DUF4140: N-terminal d 20.4 2.5E+02 0.0054 18.0 5.4 32 34-65 70-101 (104)
104 COG1382 GimC Prefoldin, chaper 20.3 3.2E+02 0.0068 19.2 5.3 42 15-58 67-108 (119)
105 PF15188 CCDC-167: Coiled-coil 20.1 2.7E+02 0.0059 18.3 5.4 51 5-69 14-64 (85)
No 1
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=99.81 E-value=7.2e-20 Score=123.53 Aligned_cols=81 Identities=35% Similarity=0.456 Sum_probs=68.8
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC----C
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----S 77 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e----~ 77 (102)
|||+++||+ |||.|++++.+||.....|++|+++|.+||++++++++|++++|.+|++||..+++|+++++ +
T Consensus 1 MLDik~ir~----n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~ 76 (108)
T PF02403_consen 1 MLDIKLIRE----NPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEV 76 (108)
T ss_dssp --SHHHHHH----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHH
T ss_pred CCCHHHHHh----CHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHH
Confidence 999999999 99999999999985555699999999999999999999999999999999999999866554 4
Q ss_pred CCchhHHhh
Q psy10035 78 STLPGETLN 86 (102)
Q Consensus 78 ~~l~~~~~~ 86 (102)
.++..++..
T Consensus 77 ~~lk~~i~~ 85 (108)
T PF02403_consen 77 KELKEEIKE 85 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 2
>PLN02678 seryl-tRNA synthetase
Probab=99.66 E-value=2.4e-16 Score=129.77 Aligned_cols=84 Identities=43% Similarity=0.641 Sum_probs=72.3
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC----C
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----S 77 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e----~ 77 (102)
|||+++||+++|.|||.|++++++||++.+.||+|+++|++||++++++++|++++|++||+|+.+++.+++.++ +
T Consensus 1 mlD~k~ir~~~~~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~ 80 (448)
T PLN02678 1 MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAET 80 (448)
T ss_pred CCCHHHHhcccccCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 999999998888899999999999998766689999999999999999999999999999999987777665443 3
Q ss_pred CCchhHHh
Q psy10035 78 STLPGETL 85 (102)
Q Consensus 78 ~~l~~~~~ 85 (102)
++|.++|.
T Consensus 81 ~~Lk~ei~ 88 (448)
T PLN02678 81 KELKKEIT 88 (448)
T ss_pred HHHHHHHH
Confidence 44444443
No 3
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.62 E-value=1e-15 Score=124.55 Aligned_cols=82 Identities=24% Similarity=0.349 Sum_probs=69.3
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC-CCC---
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVE-LVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP-VGD--- 76 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~-~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~-~~e--- 76 (102)
||||++||+ |||.|++++++||++.+ .||+|+.+|++||++++++++|++++|.+||+|+.+++.+++ .++
T Consensus 1 MlDik~ir~----n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~ 76 (418)
T TIGR00414 1 MLDRKLLRN----NPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKK 76 (418)
T ss_pred CCCHHHHHh----CHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 899999999 99999999999997654 489999999999999999999999999999999987766654 333
Q ss_pred -CCCchhHHhhh
Q psy10035 77 -SSTLPGETLNV 87 (102)
Q Consensus 77 -~~~l~~~~~~~ 87 (102)
+++|.++|+++
T Consensus 77 ~~~~l~~~~~~~ 88 (418)
T TIGR00414 77 ELKELKEELTEL 88 (418)
T ss_pred HHHHHHHHHHHH
Confidence 45555555544
No 4
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.57 E-value=6.1e-15 Score=120.24 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=67.8
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC----C
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----S 77 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e----~ 77 (102)
|||+++||+ ||+.|++++++|+++.+ ||+|+++|.+||++++++++|++++|.+||+|+..++.+++.++ +
T Consensus 1 MlD~k~ir~----n~~~v~~~l~~R~~~~~-vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~ 75 (425)
T PRK05431 1 MLDIKLIRE----NPEAVKEALAKRGFPLD-VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEV 75 (425)
T ss_pred CCCHHHHHh----CHHHHHHHHHhcCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH
Confidence 899999999 99999999999997655 89999999999999999999999999999999987766644333 4
Q ss_pred CCchhHHhh
Q psy10035 78 STLPGETLN 86 (102)
Q Consensus 78 ~~l~~~~~~ 86 (102)
++|..++++
T Consensus 76 ~~l~~~~~~ 84 (425)
T PRK05431 76 KELKEEIKA 84 (425)
T ss_pred HHHHHHHHH
Confidence 444444443
No 5
>PLN02320 seryl-tRNA synthetase
Probab=99.47 E-value=1.2e-13 Score=115.30 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=60.7
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP 73 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~ 73 (102)
|||+++||+ ||+.|++++++||++.+ +|+|+++|++||++++++++|++++|.+||+|+. ++.+++
T Consensus 66 mlD~k~ir~----n~~~v~~~l~~R~~~~~-vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~ 131 (502)
T PLN02320 66 AIDFKWIRD----NKEAVAINIRNRNSNAN-LELVLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSE 131 (502)
T ss_pred ccCHHHHHh----CHHHHHHHHHhcCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCC
Confidence 999999999 99999999999998777 8999999999999999999999999999999987 444433
No 6
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.9e-13 Score=110.46 Aligned_cols=68 Identities=34% Similarity=0.455 Sum_probs=62.6
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP 73 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~ 73 (102)
|||+++||+ |||.|++++.+||.+...++++++||.+||+++.++|.|++++|.+|++||+.++.+++
T Consensus 1 mld~k~ir~----n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~ 68 (429)
T COG0172 1 MLDLKLIRE----NPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED 68 (429)
T ss_pred CchHHHhhh----CHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 999999999 99999999999986666699999999999999999999999999999999977666554
No 7
>KOG2509|consensus
Probab=99.17 E-value=7.1e-11 Score=97.30 Aligned_cols=65 Identities=52% Similarity=0.818 Sum_probs=63.3
Q ss_pred CcCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10035 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIG 65 (102)
Q Consensus 1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~ 65 (102)
||||++.||.++||+|+.++++.++|+.+...|++++++|.+|+....++++++.+.|.+++.|+
T Consensus 1 ~~L~~~lf~~~~g~~p~~ir~~q~~r~~d~~~v~~~i~~d~~w~~~~~~ldeln~~~n~l~k~i~ 65 (455)
T KOG2509|consen 1 QMLDIRLFRTRKGGNPELIRESQKKRFQDVEAVDEVIELDKEWIETRFELDELNKEKNKLNKEIG 65 (455)
T ss_pred CccccccccccCCCChHHHHHHHHHhhcCHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhhhHhh
Confidence 89999999999999999999999999988888999999999999999999999999999999999
No 8
>PRK14127 cell division protein GpsB; Provisional
Probab=88.54 E-value=1.8 Score=29.90 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=32.0
Q ss_pred CcCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIEN-DLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~L-D~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
|+|....|++ ..|..+ -||++.+-||.+++. -..+..+..+...|+.+...+..++..+
T Consensus 4 ~~LTp~DI~~------KeF~~~--~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~ 63 (109)
T PRK14127 4 IKLTPKDILE------KEFKTS--MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDEL 63 (109)
T ss_pred CCCCHHHHhh------CccCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777776 334443 479887667766643 2234444444444554444444444433
No 9
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=73.38 E-value=1.8 Score=29.12 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=24.2
Q ss_pred hCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10035 26 RFKNVELVDKVI-ENDLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (102)
Q Consensus 26 R~~~~~~vd~ii-~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~k 68 (102)
|||+++-||.++ .+......+..+...|+.+.+.+..++..+.
T Consensus 16 rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 16 RGYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 788876677654 3455555666666666666666665555443
No 10
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=71.28 E-value=24 Score=22.55 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=25.3
Q ss_pred HHHh-hCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10035 22 NQKD-RFKNVELVDKVIENDLKWRQFRHKADNFNKF 56 (102)
Q Consensus 22 ~L~k-R~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~ 56 (102)
.|.. -|++...+..++.|.++...+..+++.|+..
T Consensus 52 ~L~~d~g~~l~~i~~~l~l~~~~~~l~~~l~~l~~~ 87 (91)
T cd04766 52 RLTQELGVNLAGVKRILELEEELAELRAELDELRAR 87 (91)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 7888777888998777777777777777654
No 11
>KOG3119|consensus
Probab=70.04 E-value=24 Score=27.54 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=42.0
Q ss_pred CHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy10035 15 DPEKVRKNQKDRF-KNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAK 71 (102)
Q Consensus 15 n~e~v~~~L~kR~-~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~ 71 (102)
|=+.|+.+-.+|. ...+.--++..|.++.-.+..++++|+.+...++.-+..+.+.+
T Consensus 202 NN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~ 259 (269)
T KOG3119|consen 202 NNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPG 259 (269)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3345555555554 33444578999999999999999999999999998877665543
No 12
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=67.50 E-value=28 Score=23.11 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHhcCC
Q psy10035 32 LVDKVIENDLKWRQFRHKADNFN--------KFKNLCSKVIGEKMKAKE 72 (102)
Q Consensus 32 ~vd~ii~LD~~rR~l~~~~e~Lr--------a~rN~lSK~I~~~kk~~~ 72 (102)
.+.+|+.||.+|-..+-+.=.+= ...|.++++|.++.+.|-
T Consensus 17 ~~k~F~~Le~~RE~aIeeav~~c~~g~pFs~d~IN~vT~~mN~LAk~gi 65 (84)
T PF10752_consen 17 IIKQFLQLEQQREAAIEEAVSLCKQGEPFSTDKINEVTKEMNELAKQGI 65 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHHcCC
Confidence 47899999999988877654443 358999999999888773
No 13
>KOG4196|consensus
Probab=66.03 E-value=35 Score=24.58 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=35.0
Q ss_pred HHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10035 20 RKNQKDRFKNV----ELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (102)
Q Consensus 20 ~~~L~kR~~~~----~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~k 68 (102)
+.-|++||+.. -.|.+=-+|..++..+.++++.|+.+.-.+..+.-.++
T Consensus 56 RRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 56 RRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777743 23677778888888888888888888777777765443
No 14
>PF03280 Lipase_chap: Proteobacterial lipase chaperone protein; InterPro: IPR004961 The proteobacterial lipase chaperone is a lipase helper protein which may be involved in the folding of extracellular lipase during its passage through the periplasm [].; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016020 membrane; PDB: 2ES4_E.
Probab=65.08 E-value=42 Score=24.70 Aligned_cols=49 Identities=12% Similarity=0.294 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10035 12 KGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61 (102)
Q Consensus 12 k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lS 61 (102)
.|++++.++... ...++++..+.+..||.++..-..+++....++..+.
T Consensus 120 ~g~~~~~~~~~r-~~~vg~eaA~RL~~ld~~~~~w~~r~~~Y~~~r~~I~ 168 (195)
T PF03280_consen 120 QGASEQELRAAR-AQLVGPEAAQRLAQLDQQRAQWQQRLDSYLQERDQIL 168 (195)
T ss_dssp TT--HHHHHHHH-HCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888775 4556788789999999999999999999999988874
No 15
>KOG3863|consensus
Probab=64.53 E-value=44 Score=29.47 Aligned_cols=54 Identities=6% Similarity=0.144 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCCchhHHhhhhHHHHhhhhccC
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGETLNVCWSVLKHALHPS 99 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~ 99 (102)
+|.|+.|..+-..++.+-++|..+++++-+.++..+. -|..+|-+|+++..-|.
T Consensus 510 Ld~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kq-------------qls~L~~~Vf~~lrd~e 563 (604)
T KOG3863|consen 510 LDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQ-------------QLSELYQEVFQQLRDEE 563 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhccc
Confidence 7999999999999999999999999999998887544 56777777777776554
No 16
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=62.92 E-value=7 Score=29.34 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.9
Q ss_pred HhccCCCCHHHHHHHHHhhCCChHHH
Q psy10035 8 FRTEKGGDPEKVRKNQKDRFKNVELV 33 (102)
Q Consensus 8 IR~~k~gn~e~v~~~L~kR~~~~~~v 33 (102)
+|. ||+.+.++|+.||++++.|
T Consensus 89 LR~----~p~~L~~RLk~RGy~~eKI 110 (180)
T COG1936 89 LRA----DPEVLYERLKGRGYSEEKI 110 (180)
T ss_pred EcC----CHHHHHHHHHHcCCCHHHH
Confidence 577 9999999999999987643
No 17
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=57.11 E-value=52 Score=24.90 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10035 32 LVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIG 65 (102)
Q Consensus 32 ~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~ 65 (102)
.+++++++..+-..+..++|+++.+++.+...+.
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3899999999999999999999999999998884
No 18
>PRK01294 lipase chaperone; Provisional
Probab=56.60 E-value=60 Score=26.20 Aligned_cols=49 Identities=12% Similarity=0.272 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10035 12 KGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61 (102)
Q Consensus 12 k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lS 61 (102)
.|++++.++.. ....+.++..+.+..||.+|..-+.+++.-.+++..+.
T Consensus 246 ~g~s~~~~~~~-r~~~vG~EaA~RL~~Ld~qr~~wq~r~~~Y~~~R~~I~ 294 (336)
T PRK01294 246 SGASPQELRLM-RAQLVGPEAAQRLEQLDQQRAAWQQRYDDYLAQRAQIL 294 (336)
T ss_pred cCCCHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999885 55567888899999999999999999999999998776
No 19
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=55.85 E-value=55 Score=21.35 Aligned_cols=36 Identities=8% Similarity=-0.051 Sum_probs=21.1
Q ss_pred HHHh-hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10035 22 NQKD-RFKNVELVDKVIENDLKWRQFRHKADNFNKFK 57 (102)
Q Consensus 22 ~L~k-R~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~r 57 (102)
.|.. -|++.+.+..++++..++-.+..++.++.+++
T Consensus 52 ~L~~~~G~~l~~i~~~l~l~~~~~~l~~~~~~~~~~~ 88 (98)
T cd01279 52 RLSQDEGFNLAGIKRIIELYPQVLLLQCRSCEHATEL 88 (98)
T ss_pred HHHHHCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444 57777667888877655555444444444443
No 20
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.80 E-value=25 Score=25.04 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAK 71 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~ 71 (102)
-+++-++|.+-..+..++.+++.+.+.+..+++.+....
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467888888888888888888888888888877766533
No 21
>PRK05560 DNA gyrase subunit A; Validated
Probab=52.12 E-value=73 Score=28.62 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=33.9
Q ss_pred hHHHhccCCCCHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRF-KNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~-~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
|+.||+.+ +.+.+...|..++ +...-.+.|+++-- ++=...+++.|+.+.+++.++|..+..
T Consensus 389 I~iir~s~--~~~~~~~~L~~~f~~~~~qa~~IL~m~L-~~LT~~e~~kL~~E~~~l~~ei~~l~~ 451 (805)
T PRK05560 389 IALIRASP--TPAEAKEGLMERFGLSEIQAQAILDMRL-QRLTGLERDKIEDEYKELLALIADLKD 451 (805)
T ss_pred HHHHHcCC--CHHHHHHHHHHhcCCCHHHHHHHHHhHH-HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667655 6777888888874 33323555555422 222334455555555555555554443
No 22
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=50.84 E-value=51 Score=30.41 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=36.8
Q ss_pred hHHHhccCCCCHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRF-KNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~-~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
|+.||..+ +.+..++.|..|+ ++..-.+.|+++--+| =...+.+.|+.+..++.++|..+..
T Consensus 405 i~~ir~s~--~~~~a~~~l~~~f~~s~~qa~aIl~mrL~~-Lt~le~~kl~~E~~eL~~~I~~l~~ 467 (957)
T PRK13979 405 IKTIRSSK--SKKDASENLIEKFGFTDEQAEAILELMLYR-LTGLEIVAFEKEYKELEKLIKKLTK 467 (957)
T ss_pred HHHHHcCC--CHHHHHHHHHHHhCCCHHHHHHHHhCcHHh-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56688766 6788888888875 4443356666653322 2334555666666666666554433
No 23
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=50.57 E-value=1.3e+02 Score=26.82 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=20.5
Q ss_pred hHHHhccCCCCHHHHHHHHHhh-CCChHHHHHHHHH
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDR-FKNVELVDKVIEN 39 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR-~~~~~~vd~ii~L 39 (102)
|+.||..+ +.+.+++.|..+ +++..-.+.|+++
T Consensus 386 i~iir~~~--~~~~~~~~l~~~f~~~~~q~~~il~m 419 (738)
T TIGR01061 386 IKLIRSSE--DKSDAKENLIDNFKFTENQAEAIVSL 419 (738)
T ss_pred hHHHHcCC--CHHHHHHHHHHhcCCCHHHHHHHHhh
Confidence 55667644 677888888888 4543334555443
No 24
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.02 E-value=56 Score=19.71 Aligned_cols=35 Identities=6% Similarity=0.084 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
+-.+..+..+...+..++++++.+...+..++..+
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666677777777777777777777776654
No 25
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=49.51 E-value=87 Score=28.16 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=29.9
Q ss_pred hHHHhccCCCCHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDR-FKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR-~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
|+.||..+ +.+.+...|..+ +++..-.+.|+.+-- ++=...+++.|+.+..++.++|..
T Consensus 386 i~~ir~~~--~~~~~~~~L~~~~~~~~~qa~~il~m~L-~~Lt~~e~~kl~~e~~~l~~ei~~ 445 (800)
T TIGR01063 386 IALIRASQ--NTEEAKTRLVERFSLSEIQAQAILDMRL-QRLTGLEREKLQEEYKELLELIAD 445 (800)
T ss_pred HHHHHhCC--CHHHHHHHHHHhcCCCHHHHHHHHHhHH-HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45566644 667788888887 354433455554322 222223344444444444444443
No 26
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=48.80 E-value=81 Score=21.25 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHhhCCChHH-HHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC-------CCCchhHH
Q psy10035 14 GDPEKVRKNQKDRFKNVEL-VDKVIENDLKWR-QFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD-------SSTLPGET 84 (102)
Q Consensus 14 gn~e~v~~~L~kR~~~~~~-vd~ii~LD~~rR-~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e-------~~~l~~~~ 84 (102)
.|++.+.+.|.+|+-.+.. +..++.-=.... --....++|+...+.++.-+..+..-|.+.+. ..+||..+
T Consensus 54 ~~Y~~a~~~L~~~yg~~~~i~~~~~~~l~~l~~~~~~d~~~L~~~~~~v~~~i~~L~~lg~~~~~~~l~~~i~~KLp~~~ 133 (145)
T PF03564_consen 54 ENYEEAWELLEERYGNPRRIIQALLEELRNLPPISNDDPEALRSLVDKVNNCIRALKALGVNVDDPLLISIILSKLPPEI 133 (145)
T ss_pred hhhHHHHHHHHHHhCCchHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHCCHHH
Confidence 4889999999999755432 333332222222 34457888999999999999888887766554 46677666
Q ss_pred hh
Q psy10035 85 LN 86 (102)
Q Consensus 85 ~~ 86 (102)
..
T Consensus 134 ~~ 135 (145)
T PF03564_consen 134 RE 135 (145)
T ss_pred HH
Confidence 54
No 27
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=47.96 E-value=95 Score=27.14 Aligned_cols=57 Identities=7% Similarity=0.155 Sum_probs=46.0
Q ss_pred hHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~k 68 (102)
|+.++. +.|.++..+.+.++++ +++-.+..+|-++-.+++.+.-+.-++.|.|+.-+
T Consensus 346 i~~L~~----~~d~L~~q~~kq~Is~---e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~ 402 (622)
T COG5185 346 IKALQS----NIDELHKQLRKQGIST---EQFELMNQEREKLTRELDKINIQSDKLTKSVKSRK 402 (622)
T ss_pred HHHHHh----hHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHH
Confidence 678888 8999999998888754 57777888888888888888888888888886533
No 28
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=45.02 E-value=74 Score=20.88 Aligned_cols=16 Identities=6% Similarity=0.073 Sum_probs=7.3
Q ss_pred HHhhCCChHHHHHHHH
Q psy10035 23 QKDRFKNVELVDKVIE 38 (102)
Q Consensus 23 L~kR~~~~~~vd~ii~ 38 (102)
++..|++.+.+.+++.
T Consensus 54 lr~~G~~l~~i~~~l~ 69 (99)
T cd04765 54 LYEKGYTIEGAKQALK 69 (99)
T ss_pred HHHCCCCHHHHHHHHH
Confidence 3445555443444443
No 29
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=44.69 E-value=68 Score=24.30 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC-----CCCchhHHhhh
Q psy10035 31 ELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD-----SSTLPGETLNV 87 (102)
Q Consensus 31 ~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e-----~~~l~~~~~~~ 87 (102)
+++.++++|+.+|+....+++.|+.-++.+ .-+....+..++ ..+|.+||.+.
T Consensus 146 ~l~~~L~~l~~~r~~~~~rl~~lr~L~~lL----epf~~~~~~IQ~NLvtr~g~l~~El~rm 203 (213)
T PF13093_consen 146 ELRERLIELSEQRQYLQQRLEYLRRLRSLL----EPFDSPQENIQPNLVTRDGELEAELERM 203 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccCCccccccccCCCCchHHHHHHHH
Confidence 347899999999999999999998877776 222222233333 57788887665
No 30
>smart00830 CM_2 Chorismate mutase type II. Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine PUBMED:9642265, PUBMED:9497350.
Probab=44.21 E-value=55 Score=19.90 Aligned_cols=19 Identities=0% Similarity=-0.073 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHHHhc
Q psy10035 52 NFNKFKNLCSKVIGEKMKA 70 (102)
Q Consensus 52 ~Lra~rN~lSK~I~~~kk~ 70 (102)
.|-++|..++++|+.+|+.
T Consensus 13 ~Ll~~R~~l~~~i~~~K~~ 31 (79)
T smart00830 13 ALLAERAALAREVARLKAK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3557788888888887764
No 31
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=43.73 E-value=32 Score=23.94 Aligned_cols=10 Identities=10% Similarity=0.202 Sum_probs=4.8
Q ss_pred CCCchhHHhh
Q psy10035 77 SSTLPGETLN 86 (102)
Q Consensus 77 ~~~l~~~~~~ 86 (102)
+.+|.+++..
T Consensus 98 veEL~~Dv~D 107 (120)
T PF12325_consen 98 VEELRADVQD 107 (120)
T ss_pred HHHHHHHHHH
Confidence 4555544443
No 32
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=42.96 E-value=51 Score=25.50 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC----CCCchhHHhhhhHHH
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----SSTLPGETLNVCWSV 91 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e----~~~l~~~~~~~~~~~ 91 (102)
-+.+-+|...|..+...++++..+++........+..-|.+..+ -..|..+|+++=|..
T Consensus 170 pe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivreY~~l~~~ie~k~Wal 232 (238)
T PF14735_consen 170 PETVPALRKIRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIVREYTDLQQEIENKRWAL 232 (238)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999999999888888877766 478899999999974
No 33
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.95 E-value=78 Score=22.83 Aligned_cols=58 Identities=9% Similarity=-0.020 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC-CCCCCCCchhHHhhhhHH
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKE-PVGDSSTLPGETLNVCWS 90 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~-~~~e~~~l~~~~~~~~~~ 90 (102)
-++--.++..+.+-..++..||.++..-.-++..+...+. |...+.+|..||..+--+
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQS 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677788888888889999999988888878776654332 222278888888776543
No 34
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=42.81 E-value=99 Score=20.50 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhCCChHHHHHHHH
Q psy10035 16 PEKVRKNQKDRFKNVELVDKVIE 38 (102)
Q Consensus 16 ~e~v~~~L~kR~~~~~~vd~ii~ 38 (102)
|-.++..|..||++.+.+++.++
T Consensus 45 ~~~I~~~L~~kGi~~~~i~~~l~ 67 (121)
T PF02631_consen 45 PRRIRQKLKQKGIDREIIEEALE 67 (121)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHT
T ss_pred HHHHHHHHHHHCCChHHHHHHHH
Confidence 77899999999999888888887
No 35
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=42.55 E-value=1.3e+02 Score=25.35 Aligned_cols=51 Identities=10% Similarity=-0.043 Sum_probs=34.7
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy10035 19 VRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKA 70 (102)
Q Consensus 19 v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~ 70 (102)
+.+.+..++++..-.+.|+.+- -|+=...+++.|+.+..++.++|..+.+.
T Consensus 377 L~~~l~~~~~~~~qa~~IL~m~-L~~LT~~e~~kL~~E~~~l~~ei~~l~~~ 427 (445)
T cd00187 377 LIEELEKLGFSEIQADAILDMR-LRRLTKLEREKLLKELKELEAEIEDLEKI 427 (445)
T ss_pred HHHHHHhcCCCHHHHHHHHHhH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566654478888764 34445667888999999999888877663
No 36
>PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5.4.99.5 from EC, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine [, ]. Prephenate dehydratase (IPR001086 from INTERPRO, 4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate into phenylpyruvate. In microorganisms PDT is involved in the terminal pathway of the biosynthesis of phenylalanine. In some bacteria, such as Escherichia coli, PDT is part of a bifunctional enzyme (P-protein) that also catalyzes the transformation of chorismate into prephenate (chorismate mutase) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional chorismate mutase aligns well with the N-terminal part of P-proteins [].; GO: 0046417 chorismate metabolic process; PDB: 1YBZ_A 2GTV_X 2FP1_B 2F6L_B 2FP2_B 2AO2_A 3HGW_C 3HGX_B 2H9C_A 3RET_B ....
Probab=41.34 E-value=85 Score=19.33 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhcC
Q psy10035 47 RHKADNFNKFKNLCSKVIGEKMKAK 71 (102)
Q Consensus 47 ~~~~e~Lra~rN~lSK~I~~~kk~~ 71 (102)
-.++=.|-++|..++++||.+|+..
T Consensus 8 D~~i~~Ll~~R~~l~~~i~~~K~~~ 32 (81)
T PF01817_consen 8 DREIVDLLAERMDLVRKIAEYKKEN 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455567778888999999888743
No 37
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=40.02 E-value=1e+02 Score=28.14 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=51.8
Q ss_pred hHHHhccCCCCHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC-CCCchh
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRF-KNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD-SSTLPG 82 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~-~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e-~~~l~~ 82 (102)
|..||..+ ++...++.|..|+ ++....+.|+.+--+ |=...+.+.++.+.+.+.++|..+..-=.+... ...+..
T Consensus 393 I~iIr~s~--~~~~a~~~L~~~f~lse~Qa~aIl~mrL~-rLt~le~~~i~~E~~~L~~~i~~l~~iL~s~~~~~~~i~~ 469 (804)
T COG0188 393 IEIIRESK--DKPEAKEELMARFGLSEKQAEAILDLRLR-RLTGLEEEKIEKELKELEKEIADLEKILASEERLLDIIKK 469 (804)
T ss_pred HHHHHcCC--CchHHHHHHHHHcCCcHHHHHHHHhhhHH-HhhcchHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 56777755 5566777777776 333335666666443 334478888888888888888876653222222 555566
Q ss_pred HHhhhhHH
Q psy10035 83 ETLNVCWS 90 (102)
Q Consensus 83 ~~~~~~~~ 90 (102)
|+.++-|.
T Consensus 470 eL~~~~~k 477 (804)
T COG0188 470 ELLEIKKK 477 (804)
T ss_pred HHHHHHHH
Confidence 66666554
No 38
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.89 E-value=1.9e+02 Score=23.06 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=29.7
Q ss_pred CchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 3 LDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 3 LDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
+++.|+|. ..++|.+.-.....-.....+.-..+........+++.+..+..+..++++.
T Consensus 166 vkV~WLR~----~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e 225 (269)
T PF05278_consen 166 VKVDWLRS----KLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKE 225 (269)
T ss_pred cchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888 7777777644332101112222333333333444555555555555555443
No 39
>KOG3831|consensus
Probab=38.76 E-value=18 Score=26.96 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=10.0
Q ss_pred HHhhhhHHHHhh
Q psy10035 83 ETLNVCWSVLKH 94 (102)
Q Consensus 83 ~~~~~~~~~~~~ 94 (102)
-+...|||++|.
T Consensus 90 al~t~~wsiika 101 (196)
T KOG3831|consen 90 ALATACWSIIKA 101 (196)
T ss_pred HHHHHHHHHHHH
Confidence 467899999985
No 40
>COG4915 XpaC 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only]
Probab=38.40 E-value=1.5e+02 Score=22.66 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=13.7
Q ss_pred chHHHhccCCCCHHHHHHHHHh
Q psy10035 4 DLDLFRTEKGGDPEKVRKNQKD 25 (102)
Q Consensus 4 Dik~IR~~k~gn~e~v~~~L~k 25 (102)
|+++||+ |.++.++.+.+
T Consensus 69 dykyiR~----nLeearqki~~ 86 (204)
T COG4915 69 DYKYIRE----NLEEARQKIKR 86 (204)
T ss_pred hHHHHHH----hHHHHHHHHHH
Confidence 6788888 88887777655
No 41
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.69 E-value=1e+02 Score=22.79 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 34 d~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
+....+.....++..+++.++.+...+...|...+.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666666666666666666665543
No 42
>PF06124 DUF960: Staphylococcal protein of unknown function (DUF960); InterPro: IPR009303 This family consists of several hypothetical proteins from several species of bacteria. The function of this family is unknown.; PDB: 2R41_C.
Probab=37.47 E-value=25 Score=23.41 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=16.5
Q ss_pred CCCchhHHhhhhHHHHhhhh
Q psy10035 77 SSTLPGETLNVCWSVLKHAL 96 (102)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~ 96 (102)
+.+||.+|+-.||..+.+.+
T Consensus 9 ~~~LP~~lq~~~W~iID~~l 28 (94)
T PF06124_consen 9 AESLPIELQDSFWQIIDNNL 28 (94)
T ss_dssp HTTS-HHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHHHHHh
Confidence 57899999999999998753
No 43
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=37.00 E-value=97 Score=24.82 Aligned_cols=33 Identities=6% Similarity=0.153 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 34 d~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
+.+.+|.+++-.++.++++|..+++.+.+++..
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emrt 36 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLERRRERIEKEMRT 36 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467788999999999999999999999999854
No 44
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.81 E-value=1.3e+02 Score=20.17 Aligned_cols=35 Identities=3% Similarity=-0.132 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10035 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (102)
Q Consensus 34 d~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~k 68 (102)
-...++..+...+..++++++++...+..+|..++
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777777777777777777777776554
No 45
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=36.65 E-value=98 Score=21.45 Aligned_cols=24 Identities=13% Similarity=0.502 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHH
Q psy10035 16 PEKVRKNQKDRFKNVELVDKVIEN 39 (102)
Q Consensus 16 ~e~v~~~L~kR~~~~~~vd~ii~L 39 (102)
+..|+..|..+|++.++|+++++-
T Consensus 78 ~~~I~~~L~~kGi~~~~I~~~l~~ 101 (157)
T PRK00117 78 PRRIRQELRQKGVDREIIEEALAE 101 (157)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 778999999999999888888774
No 46
>PF06238 Borrelia_lipo_2: Borrelia burgdorferi BBR25 lipoprotein; InterPro: IPR009358 This entry consists of a number of lipoproteins conserved in Borrelia species [].
Probab=35.24 E-value=66 Score=22.33 Aligned_cols=25 Identities=16% Similarity=0.021 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCC
Q psy10035 49 KADNFNKFKNLCSKVIGEKMKAKEP 73 (102)
Q Consensus 49 ~~e~Lra~rN~lSK~I~~~kk~~~~ 73 (102)
-+..|+++||++=++.-..-+.|++
T Consensus 86 iIs~LkakRNkiMkeyi~~Lk~gen 110 (111)
T PF06238_consen 86 IISSLKAKRNKIMKEYINILKRGEN 110 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3678999999999887666666654
No 47
>PRK10869 recombination and repair protein; Provisional
Probab=34.95 E-value=2.9e+02 Score=23.63 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHhcCCCCCCCCCchhH
Q psy10035 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKV-------IGEKMKAKEPVGDSSTLPGE 83 (102)
Q Consensus 15 n~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~-------I~~~kk~~~~~~e~~~l~~~ 83 (102)
+|+.-+.-|..=+-......++-.++..|+++..++++++.......++ +.++...+..+++-.+|.++
T Consensus 138 ~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e 213 (553)
T PRK10869 138 KPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEE 213 (553)
T ss_pred CHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 3444444444322113457888899999999999998888776555443 44445555455553444433
No 48
>PRK14127 cell division protein GpsB; Provisional
Probab=34.79 E-value=1.5e+02 Score=20.34 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 12 KGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 12 k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
+|=++++|.+-|.. +++.+-.+..+...+..++..|+.+....+.++...
T Consensus 21 RGYd~~EVD~FLd~------V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 21 RGYDQDEVDKFLDD------VIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred CCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56788888887654 356666777788888888888888888888877643
No 49
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.54 E-value=2.5e+02 Score=22.68 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------cC---CCCCCCCCchhHHhhhhHHHHhhhhcc
Q psy10035 32 LVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK--------AK---EPVGDSSTLPGETLNVCWSVLKHALHP 98 (102)
Q Consensus 32 ~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk--------~~---~~~~e~~~l~~~~~~~~~~~~~~~~~~ 98 (102)
.++.+-.+-.+|..+..++.+++..+|.+...+..+.+ .+ ....+..++..+|.++-|-.....|.|
T Consensus 53 ~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~ 130 (294)
T COG1340 53 LREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTP 130 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCCh
Confidence 35666677777777777777777777777665544322 11 112226777777877777665555554
No 50
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=33.20 E-value=1.4e+02 Score=24.14 Aligned_cols=51 Identities=4% Similarity=-0.052 Sum_probs=40.4
Q ss_pred hHHHhccCCCCHHHHHHHHHhh-C--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDR-F--KNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR-~--~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~ 59 (102)
++++++ ....+.+.|.+. | ++.+.+.+.|++..+-|++..++.++++..+.
T Consensus 137 ~~Y~~~----el~~l~~~LE~~~G~~it~e~L~~aI~~~N~~R~~~~~l~~l~~~~p~ 190 (380)
T TIGR02263 137 GEFYTA----ELNELCEGLEHLSGKKITDDAIRASIAVFNDNRKLIQALYGLRADEPW 190 (380)
T ss_pred HHHHHH----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 456777 677788888876 4 35566899999999999999999999877653
No 51
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.11 E-value=1.7e+02 Score=23.17 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 34 d~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
.+|-++..+..++..++++++++.+.+.++|..
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666644
No 52
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.99 E-value=1.5e+02 Score=19.40 Aligned_cols=28 Identities=4% Similarity=0.049 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 39 NDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 39 LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
|+.+...+..+++.+..+...+.+++..
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~e 95 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKE 95 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555544443
No 53
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=30.78 E-value=1.6e+02 Score=20.06 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy10035 35 KVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAK 71 (102)
Q Consensus 35 ~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~ 71 (102)
.+..|....+.+...+..|..+...+..++..+.+.|
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~ 38 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKG 38 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566777777777777777777777777776665554
No 54
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=30.70 E-value=1.2e+02 Score=18.11 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhHHH
Q psy10035 32 LVDKVIENDLKWRQFRH-KADNFNKFKNLCS 61 (102)
Q Consensus 32 ~vd~ii~LD~~rR~l~~-~~e~Lra~rN~lS 61 (102)
.+..|+++|.+-+.+.. ..+++..+.+.+.
T Consensus 45 ~l~~Il~~d~~i~~ll~~~~~~l~~~l~~~~ 75 (84)
T PF05400_consen 45 LLRRILELDQEIRALLQARRDELKQELRQLR 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777776665543 3444444444433
No 55
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=30.67 E-value=1.8e+02 Score=22.55 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=23.9
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10035 19 VRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKV 63 (102)
Q Consensus 19 v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~ 63 (102)
|..+++.|+. ....+|.++.++...++..|+.+.+.+.+.
T Consensus 83 IVtsQRDRFR-----~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 83 IVTSQRDRFR-----QRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566652 344556666666666666666666666554
No 56
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.11 E-value=1.8e+02 Score=19.81 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=25.0
Q ss_pred HHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy10035 7 LFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNL 59 (102)
Q Consensus 7 ~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~ 59 (102)
||+. +.+.++..+..|--..+ .+|-.+.++-..+..++.+++.....
T Consensus 64 lv~q----d~~e~~~~l~~r~E~ie--~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 64 LVKV----DKTKVEKELKERKELLE--LRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred Hhhc----cHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566 67777777777731111 34445555555555555444444433
No 57
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=29.89 E-value=3.5e+02 Score=25.07 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=14.3
Q ss_pred HHHhccCCCCHHHHHHHHHhhC
Q psy10035 6 DLFRTEKGGDPEKVRKNQKDRF 27 (102)
Q Consensus 6 k~IR~~k~gn~e~v~~~L~kR~ 27 (102)
+.||+.+ +.+.+++.+..++
T Consensus 376 ~~Ir~s~--~~~~a~~~l~~~~ 395 (869)
T PRK12758 376 KEIEEAE--TWEAVIEAIDKGL 395 (869)
T ss_pred HHHHcCC--CHHHHHHHHHHhc
Confidence 4566645 7888888887765
No 58
>PF11334 DUF3136: Protein of unknown function (DUF3136); InterPro: IPR021483 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=29.83 E-value=29 Score=21.97 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHHHHHhcCCCCCCCCCchhHHhhhhHHHHhhhhccCC
Q psy10035 52 NFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGETLNVCWSVLKHALHPSL 100 (102)
Q Consensus 52 ~Lra~rN~lSK~I~~~kk~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 100 (102)
+|.+-.-.--|.+..+.++|... .+-=..|||+-|. .||-+|
T Consensus 5 ELea~y~~YckALr~Lv~~G~~~------~~i~rTvCW~rL~-~Lh~~L 46 (64)
T PF11334_consen 5 ELEAGYPLYCKALRRLVADGRSE------EEIRRTVCWDRLE-TLHRSL 46 (64)
T ss_pred HHHcCchHHHHHHHHHHHcCCCH------HHHHHHHHHHHHH-HHHHhc
Confidence 34444444445555555555332 2223579999885 355443
No 59
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=29.54 E-value=2.2e+02 Score=20.50 Aligned_cols=46 Identities=2% Similarity=0.086 Sum_probs=30.3
Q ss_pred HHHHhhCCChHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 21 KNQKDRFKNVELVDKVIE---------NDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 21 ~~L~kR~~~~~~vd~ii~---------LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
..++.-|++...|..++. |.++...+..++++|+..++.+..-+..
T Consensus 52 ~~lr~~G~sL~eI~~ll~~~~~~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~ 106 (172)
T cd04790 52 CAYRSAGVSLEDIRSLLQQPGDDATDVLRRRLAELNREIQRLRQQQRAIATLLKQ 106 (172)
T ss_pred HHHHHcCCCHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666554566664 6677777777888888887777765543
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=29.54 E-value=1.2e+02 Score=23.95 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC-----CCCCCCCchhHHhhhh
Q psy10035 35 KVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKE-----PVGDSSTLPGETLNVC 88 (102)
Q Consensus 35 ~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~-----~~~e~~~l~~~~~~~~ 88 (102)
.+-++-.+...+..+++.+.+++..+..+|..+.+..+ ...++..|.+++..++
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 66677778888888888888888888888877654322 2233677777766554
No 61
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=29.34 E-value=1e+02 Score=19.68 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=20.7
Q ss_pred cCCCCHHHHHHHHHhhCCChHHHHHHHHHHH
Q psy10035 11 EKGGDPEKVRKNQKDRFKNVELVDKVIENDL 41 (102)
Q Consensus 11 ~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~ 41 (102)
..|++++.|++...+-..+++ ..+|..+.+
T Consensus 10 h~G~~~e~vk~~F~~~~~~Vs-~~EI~~~Eq 39 (71)
T PF04282_consen 10 HEGEDPEEVKEEFKKLFSDVS-ASEISAAEQ 39 (71)
T ss_pred hCCCCHHHHHHHHHHHHCCCC-HHHHHHHHH
Confidence 457899999999888766655 345544443
No 62
>smart00265 BH4 BH4 Bcl-2 homology region 4.
Probab=29.25 E-value=77 Score=16.72 Aligned_cols=24 Identities=13% Similarity=-0.103 Sum_probs=17.5
Q ss_pred CcCchHHHhccCCCCHHHHHHHHHhhCCCh
Q psy10035 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNV 30 (102)
Q Consensus 1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~~ 30 (102)
|.+|.+-|.. +.|.-+|+.||++.
T Consensus 1 ~~~~nRelV~------~yv~yKLsQrgy~w 24 (27)
T smart00265 1 SRLDNRELVV------DYVTYKLSQNGYEW 24 (27)
T ss_pred CCcchHHHHH------HHHHHHHhhcCCCC
Confidence 5667777766 67888888888753
No 63
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=28.93 E-value=1.2e+02 Score=24.31 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred CcCchHHHhccCCCCHHHHHHHHHhhCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHH
Q psy10035 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVD-KVIENDLKWRQFRHKADNFNKFKNL-----------CSKVIGEKM 68 (102)
Q Consensus 1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd-~ii~LD~~rR~l~~~~e~Lra~rN~-----------lSK~I~~~k 68 (102)
||-++..+|. ..+.|| +|++|-.+|-.+..++-.++...+. +.+-.....
T Consensus 1 ~~~~L~~lR~------------------~ID~iD~~iv~Ll~~R~~~~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~~~ 62 (374)
T PRK11199 1 MVAELTALRD------------------QIDEVDKQLLELLAKRLELVAQVGEVKSRHGLPIYVPEREAAMLASRRAEAE 62 (374)
T ss_pred CchHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Q ss_pred hcCCCCCCCCCchhHHhhhhHHH
Q psy10035 69 KAKEPVGDSSTLPGETLNVCWSV 91 (102)
Q Consensus 69 k~~~~~~e~~~l~~~~~~~~~~~ 91 (102)
+.|-+.+.+..+-..|-..|++.
T Consensus 63 ~~~l~~~~~~~i~~~i~~~s~~~ 85 (374)
T PRK11199 63 ALGVPPDLIEDVLRRVMRESYSS 85 (374)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHH
No 64
>PRK15396 murein lipoprotein; Provisional
Probab=28.63 E-value=31 Score=22.43 Aligned_cols=48 Identities=10% Similarity=0.005 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCCchhHHhhhhHHH
Q psy10035 38 ENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGETLNVCWSV 91 (102)
Q Consensus 38 ~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e~~~l~~~~~~~~~~~ 91 (102)
+|..+-..+..+++++....+.+.-.+...+ +|+.--..||+++.-|.
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~------~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAK------DDAARANQRLDNQATKY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhc
Confidence 4444445555555555555555544443211 24566677888776653
No 65
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=28.59 E-value=2.7e+02 Score=21.22 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=29.2
Q ss_pred HhhCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10035 24 KDRFKNVELVDKVIENDL-KWRQFRHKADNFNKFKNLCSKVIGEKM 68 (102)
Q Consensus 24 ~kR~~~~~~vd~ii~LD~-~rR~l~~~~e~Lra~rN~lSK~I~~~k 68 (102)
..||++.+-|++|+.+-. .+-.+......++.+.+.+-+++..+.
T Consensus 19 ~~rGy~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~ 64 (212)
T COG3599 19 GFRGYDEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAA 64 (212)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888766888876543 334445566677777777777665543
No 66
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=28.01 E-value=37 Score=21.99 Aligned_cols=42 Identities=7% Similarity=-0.051 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcCCCCCC--CCCchhHHhhhhH
Q psy10035 48 HKADNFNKFKNLCSKVIGEKMKAKEPVGD--SSTLPGETLNVCW 89 (102)
Q Consensus 48 ~~~e~Lra~rN~lSK~I~~~kk~~~~~~e--~~~l~~~~~~~~~ 89 (102)
...+++.++-+.+.++++..+..|.+++. +++|..+..+.+-
T Consensus 28 ~~~~~~~~~~~~l~~~l~~~~~~g~~p~s~evq~l~~~~~~~~~ 71 (118)
T PF07739_consen 28 EEWQELQKEWDELFAELAALMEEGVDPDSPEVQELAERWMELIN 71 (118)
T ss_dssp -----TTHHHHHHHHHHHHHHHHT--TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHH
Confidence 45566777778888888888888755554 8888888777654
No 67
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.45 E-value=2.3e+02 Score=22.26 Aligned_cols=35 Identities=6% Similarity=0.027 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10035 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (102)
Q Consensus 34 d~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~k 68 (102)
.+...|-+.-++++.+..+|+++++.+++.+....
T Consensus 50 ~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 50 ARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44447777777777777777777777777776554
No 68
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=27.31 E-value=1.4e+02 Score=17.67 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 45 QFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 45 ~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
.+.++++.|+.+.+.+...+.+++|
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888877777766
No 69
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=27.17 E-value=3.2e+02 Score=21.72 Aligned_cols=35 Identities=6% Similarity=-0.137 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC
Q psy10035 38 ENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKE 72 (102)
Q Consensus 38 ~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~ 72 (102)
..-+.-|.....+...|..+..+..+|..++..+.
T Consensus 128 ~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P 162 (271)
T PF13805_consen 128 IHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDP 162 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCC
Confidence 33344456667788899999999999998876443
No 70
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=26.60 E-value=2e+02 Score=19.03 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=5.4
Q ss_pred hHHHHhhhhccC
Q psy10035 88 CWSVLKHALHPS 99 (102)
Q Consensus 88 ~~~~~~~~~~~~ 99 (102)
|...|....+||
T Consensus 110 Y~~fL~~v~~~~ 121 (126)
T PF13863_consen 110 YEEFLEKVVPKS 121 (126)
T ss_pred HHHHHHHhcccc
Confidence 444444444443
No 71
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=26.58 E-value=62 Score=26.05 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy10035 38 ENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAK 71 (102)
Q Consensus 38 ~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~ 71 (102)
++..+-+++...+.+++.+++.+..+|++++..-
T Consensus 45 eln~kvrE~~e~~~elr~~rdeineev~elK~kR 78 (294)
T COG1340 45 ELNAKVRELREKAQELREERDEINEEVQELKEKR 78 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677777788888888888776543
No 72
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.57 E-value=2.1e+02 Score=20.15 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q psy10035 39 NDLKWRQFRHKADNFNKFKNL 59 (102)
Q Consensus 39 LD~~rR~l~~~~e~Lra~rN~ 59 (102)
|...+|.+.++++.+-.+..+
T Consensus 59 l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 445566666666665554443
No 73
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=26.20 E-value=3.6e+02 Score=24.36 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=28.7
Q ss_pred hHHHhccCCCCHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRF-KNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~-~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~k 68 (102)
|+.||+ . +.-+..|..|+ ++..-.+.|+++-= |+=...+...++.+..++.++|..+.
T Consensus 386 I~iIR~----s-~~~k~~L~~~f~ls~~QaeaIL~mrL-~~L~~le~~~i~~E~~~l~~e~~~l~ 444 (735)
T TIGR01062 386 IEIIRE----E-DEPKTILMERFKLSAIQAEAILNLRL-RHLAKLEEHAIIDEQSELEKERAILE 444 (735)
T ss_pred HHHHHc----C-hhhHHHHHHhcCCCHHHHHHHHHhHH-HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 566777 3 34566777775 33333455554422 11223344555555555555554443
No 74
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=25.96 E-value=1.1e+02 Score=18.77 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHhhCC
Q psy10035 12 KGGDPEKVRKNQKDRFK 28 (102)
Q Consensus 12 k~gn~e~v~~~L~kR~~ 28 (102)
.|||.|.+..-++....
T Consensus 15 ~GGN~eII~~c~~~~~~ 31 (76)
T PF11929_consen 15 IGGNFEIINICLKKNKP 31 (76)
T ss_pred hCCCHHHHHHHHHHhcc
Confidence 48899999988865543
No 75
>smart00338 BRLZ basic region leucin zipper.
Probab=25.48 E-value=1.6e+02 Score=17.54 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
-..+..|..+-..+..+.+.|+.+.+.+..++..++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777888888888888877766553
No 76
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=25.41 E-value=66 Score=22.21 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 31 ELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 31 ~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
..++.+-++...--++..++|+|+....+.||+|..
T Consensus 42 ~~f~~~~ege~~~qkL~eqteeLK~kvqe~sk~i~~ 77 (106)
T PF12443_consen 42 GIFDKIREGEQMIQKLGEQTEELKDKVQEFSKRIEQ 77 (106)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 347788888899999999999999999999999843
No 77
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=25.12 E-value=1.7e+02 Score=20.97 Aligned_cols=31 Identities=0% Similarity=-0.010 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy10035 41 LKWRQFRHKADNFNKFKNLCSKVIGEKMKAK 71 (102)
Q Consensus 41 ~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~ 71 (102)
+-+.+++.+++.|+.+|-.+.+.|+.....|
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~G 41 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIG 41 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 3467788899999989999998887766655
No 78
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.07 E-value=2e+02 Score=18.69 Aligned_cols=44 Identities=2% Similarity=-0.060 Sum_probs=21.1
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy10035 21 KNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVI 64 (102)
Q Consensus 21 ~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I 64 (102)
..++.-|++.+.+.+++..+.....+..+.+++.++.+.+....
T Consensus 51 ~~l~~~G~~l~ei~~~l~~~~~~~~l~~~~~~l~~~i~~l~~~~ 94 (102)
T cd04789 51 QQLQAGGLSLKECLACLQGKLTRSLLLERLSSLAEQIARKQQAR 94 (102)
T ss_pred HHHHHCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566654455554333333344445555555555555433
No 79
>PRK14136 recX recombination regulator RecX; Provisional
Probab=24.92 E-value=2.8e+02 Score=22.54 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHH
Q psy10035 16 PEKVRKNQKDRFKNVELVDKVIEN 39 (102)
Q Consensus 16 ~e~v~~~L~kR~~~~~~vd~ii~L 39 (102)
|-.|+..|..+|++.++|++.++.
T Consensus 228 p~rIrqELrQKGId~eLIEqALee 251 (309)
T PRK14136 228 SARIVSELKRHAVGDALVESVGAQ 251 (309)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 677899999999999888887763
No 80
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.85 E-value=3.1e+02 Score=21.83 Aligned_cols=34 Identities=3% Similarity=-0.070 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 36 VIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 36 ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
+-++.++.-.+..+++++.++.|.+...+..+..
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~ 177 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEV 177 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777888888887777665544
No 81
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.77 E-value=2.1e+02 Score=18.88 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q psy10035 41 LKWRQFRHKADNFNKFKNLCSKVI 64 (102)
Q Consensus 41 ~~rR~l~~~~e~Lra~rN~lSK~I 64 (102)
...+.+..+.+.++.+...+.+.+
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 82
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.64 E-value=2.2e+02 Score=18.85 Aligned_cols=16 Identities=6% Similarity=-0.047 Sum_probs=7.3
Q ss_pred HHhhCCChHHHHHHHH
Q psy10035 23 QKDRFKNVELVDKVIE 38 (102)
Q Consensus 23 L~kR~~~~~~vd~ii~ 38 (102)
++.-|++.+.+.+++.
T Consensus 52 lr~~G~sl~eI~~~l~ 67 (112)
T cd01282 52 LLAAGLTLEEIREFLP 67 (112)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 3444555443444444
No 83
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.48 E-value=2.6e+02 Score=22.31 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc-----CCCCCCCCCchhHHhh
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKA-----KEPVGDSSTLPGETLN 86 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~-----~~~~~e~~~l~~~~~~ 86 (102)
...+-++..+..++...++....++.++..+|....+. |=+..++..|.+++..
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45666667777777777777777777777777665442 2233335666665544
No 84
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.31 E-value=67 Score=20.39 Aligned_cols=22 Identities=5% Similarity=0.226 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q psy10035 43 WRQFRHKADNFNKFKNLCSKVI 64 (102)
Q Consensus 43 rR~l~~~~e~Lra~rN~lSK~I 64 (102)
...+..+.++|+.+++.....|
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555444443
No 85
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=23.58 E-value=2.3e+02 Score=18.76 Aligned_cols=24 Identities=4% Similarity=-0.215 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcC
Q psy10035 48 HKADNFNKFKNLCSKVIGEKMKAK 71 (102)
Q Consensus 48 ~~~e~Lra~rN~lSK~I~~~kk~~ 71 (102)
.++=.|-++|-.++++||.+|+.+
T Consensus 22 ~~iv~LL~eR~~~~~~ia~~K~~~ 45 (101)
T PRK07075 22 RDIIAALGRRMQYVKAASRFKPSE 45 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcC
Confidence 344455666667777777777643
No 86
>PRK09239 chorismate mutase; Provisional
Probab=22.75 E-value=2.5e+02 Score=18.81 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy10035 42 KWRQFRHKADNFNKFKNLCSKVIGEKMKA 70 (102)
Q Consensus 42 ~rR~l~~~~e~Lra~rN~lSK~I~~~kk~ 70 (102)
+--.+-.++=.|-++|-.++++||.+|+.
T Consensus 18 ~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~ 46 (104)
T PRK09239 18 SIDNIDAALIHMLAERFKCTQAVGVLKAE 46 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445666777778888888887764
No 87
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=22.11 E-value=5.1e+02 Score=22.21 Aligned_cols=59 Identities=14% Similarity=0.242 Sum_probs=41.6
Q ss_pred chHHHhccCCCCHHHHHHHHHhhC-CC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10035 4 DLDLFRTEKGGDPEKVRKNQKDRF-KN--------VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKV 63 (102)
Q Consensus 4 Dik~IR~~k~gn~e~v~~~L~kR~-~~--------~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~ 63 (102)
-.||+.+++- ||+.|-+.|+-.. ++ ..+++.+++|..+.+..+..+|+-+..-.+...+
T Consensus 403 KaKfi~Eek~-nP~rIn~aL~~kkp~d~~eY~k~~~~~~e~l~Elq~E~k~~~~~~EE~k~~A~E~~q~ 470 (507)
T COG5118 403 KAKFIKEEKV-NPERINEALNEKKPFDQVEYNKLRSYLLEKLIELQNEHKHHMKEIEEAKNTAKEEDQT 470 (507)
T ss_pred HHHHHHHhhh-CHHHHHHHHhccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3567777776 9999999998764 22 1345778888888888888888777665555443
No 88
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=22.02 E-value=1.4e+02 Score=17.46 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=15.1
Q ss_pred HHHHHHHHhhCCChHHHHHHH
Q psy10035 17 EKVRKNQKDRFKNVELVDKVI 37 (102)
Q Consensus 17 e~v~~~L~kR~~~~~~vd~ii 37 (102)
+..++.+..||++.+.|..++
T Consensus 4 ~Ha~~rm~eR~Is~~~I~~~l 24 (73)
T PF14076_consen 4 KHARERMQERGISEEDIEDAL 24 (73)
T ss_pred HHHHHHHHhCCCCHHHHHHHH
Confidence 457788899998876565555
No 89
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.88 E-value=2.2e+02 Score=17.95 Aligned_cols=39 Identities=3% Similarity=0.003 Sum_probs=22.6
Q ss_pred HHhhCCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHH
Q psy10035 23 QKDRFKNVELVDKVIENDLK-------WRQFRHKADNFNKFKNLCS 61 (102)
Q Consensus 23 L~kR~~~~~~vd~ii~LD~~-------rR~l~~~~e~Lra~rN~lS 61 (102)
|.+-|++...+..++.+..+ +.-+....++|.++++.++
T Consensus 52 l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 97 (100)
T cd00592 52 LRELGLSLKEIRELLDARDEELSLAALLALLDEKLAELEEKIARLE 97 (100)
T ss_pred HHHcCCCHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666556666665543 4444556666666666655
No 90
>PRK14135 recX recombination regulator RecX; Provisional
Probab=21.86 E-value=1.2e+02 Score=22.87 Aligned_cols=23 Identities=9% Similarity=0.313 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhCCChHHHHHHHH
Q psy10035 16 PEKVRKNQKDRFKNVELVDKVIE 38 (102)
Q Consensus 16 ~e~v~~~L~kR~~~~~~vd~ii~ 38 (102)
+-.++..|..+|++.+.|+++++
T Consensus 125 ~~~I~~kL~~kGi~~~~Ie~~l~ 147 (263)
T PRK14135 125 PRVIKQKLLQKGIEDEIIEEALS 147 (263)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 67899999999999988888876
No 91
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=21.67 E-value=5.6e+02 Score=23.02 Aligned_cols=57 Identities=21% Similarity=0.222 Sum_probs=25.4
Q ss_pred hHHHhccCCCCHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRF-KNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~-~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
|+.||. ..+ .++.|..++ ++..-.+.|+++-- ++=...+.+.|+.+..++.++|..+
T Consensus 399 I~iir~----s~~-ak~~l~~~f~~~~~qa~~Il~m~L-~~Lt~le~~kl~~E~~~l~~ei~~l 456 (742)
T PRK05561 399 IRIIRE----SDE-PKANLMARFDLSEIQAEAILELRL-RRLAKLEEIEIRKEQDELRKEIAEL 456 (742)
T ss_pred HHHHhc----Ccc-HHHHHHHHhCCCHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666 222 456666653 33333455554322 2222234444444544444444443
No 92
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=21.64 E-value=71 Score=21.16 Aligned_cols=20 Identities=35% Similarity=0.636 Sum_probs=9.8
Q ss_pred HHHhccCCCC-HHHHHHHHHh
Q psy10035 6 DLFRTEKGGD-PEKVRKNQKD 25 (102)
Q Consensus 6 k~IR~~k~gn-~e~v~~~L~k 25 (102)
+|+++++||. |+.|.++|.+
T Consensus 36 ~WLskeRgG~IP~~V~~sl~k 56 (82)
T PF11020_consen 36 TWLSKERGGQIPEKVMDSLSK 56 (82)
T ss_pred HHHHHhhCCCCCHHHHHHHHH
Confidence 4555555543 4445444443
No 93
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.59 E-value=1.7e+02 Score=21.61 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 41 LKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 41 ~~rR~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
.+|..+..++++|+.+...+.+++..+..
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888889999999999999988875554
No 94
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.38 E-value=1.2e+02 Score=24.00 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 35 KVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 35 ~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
.+-++......+..+++.|..+...++.++...
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~ 71 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDEL 71 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555443
No 95
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.15 E-value=3.5e+02 Score=20.03 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHhhCCChHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10035 14 GDPEKVRKNQKDRFKNVEL-----------VDKVIENDLKWRQFRHKADNFNKFKN 58 (102)
Q Consensus 14 gn~e~v~~~L~kR~~~~~~-----------vd~ii~LD~~rR~l~~~~e~Lra~rN 58 (102)
|+-+..++.|.++..-... -..+-.|..+...+..+++..++.++
T Consensus 82 G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 82 GREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888776421110 12344444455555555555555555
No 96
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=21.00 E-value=2e+02 Score=23.18 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 40 DLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 40 D~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
-.+|+.+..+.++|..++..+.+++...
T Consensus 100 L~~Rk~L~~~~~el~~~k~~l~~~~~~k 127 (355)
T PF09766_consen 100 LEQRKRLEEQLKELEQRKKKLQQENKKK 127 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777776543
No 97
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=20.97 E-value=4.1e+02 Score=20.67 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=33.9
Q ss_pred CHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHH
Q psy10035 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRH--KADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 15 n~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~--~~e~Lra~rN~lSK~I~~ 66 (102)
||+..-+.|..|. ..+-+.+.--..|-.+.+ .+++++.+.-+..|+++.
T Consensus 14 npeilvdvL~~Rp---eilye~l~kL~pwq~latk~dve~l~~e~E~~~k~l~d 64 (231)
T COG5493 14 NPEILVDVLTQRP---EILYEVLAKLTPWQQLATKQDVEELRKETEQRQKELAD 64 (231)
T ss_pred CcHHHHHHHHhCh---HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999985 234444444455555554 788888888888777773
No 98
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=20.88 E-value=2.8e+02 Score=20.41 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=22.1
Q ss_pred CHHHHHHHHHhhCCChHHHHHHHHHH
Q psy10035 15 DPEKVRKNQKDRFKNVELVDKVIEND 40 (102)
Q Consensus 15 n~e~v~~~L~kR~~~~~~vd~ii~LD 40 (102)
-|..+++.|..+|++.+.|+++++..
T Consensus 86 G~~rl~qeL~qkGi~~~~Ie~aL~~~ 111 (174)
T COG2137 86 GPARLKQELKQKGIDDEIIEEALELI 111 (174)
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHhcc
Confidence 38889999999999988889888843
No 99
>KOG0995|consensus
Probab=20.84 E-value=6e+02 Score=22.55 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=21.8
Q ss_pred CHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10035 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIG 65 (102)
Q Consensus 15 n~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~ 65 (102)
+-+.++..+.+-|++ +.+|-.+..+|.++...++.++.++-.+++++.
T Consensus 316 ~~d~Lk~~Ie~Q~iS---~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 316 ENDELKKQIELQGIS---GEDVERMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443 233444444444444444444444444444443
No 100
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.56 E-value=3e+02 Score=19.02 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 39 NDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 39 LD~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
|..++..+...+..|+++.+..++.+..+
T Consensus 35 L~kqkd~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 35 LAKQKDQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666555443
No 101
>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]
Probab=20.54 E-value=2.6e+02 Score=18.31 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhc
Q psy10035 46 FRHKADNFNKFKNLCSKVIGEKMKA 70 (102)
Q Consensus 46 l~~~~e~Lra~rN~lSK~I~~~kk~ 70 (102)
+..++=.|-++|..++++||..|..
T Consensus 20 iD~~ll~Ll~eR~~l~~~Va~~K~~ 44 (101)
T COG1605 20 IDRELLDLLAERLELAKEVGEAKAA 44 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666778888899999988764
No 102
>PRK07857 hypothetical protein; Provisional
Probab=20.42 E-value=2.9e+02 Score=18.85 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKA 70 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~ 70 (102)
...+-++-.+-.++-.++=.|-++|=.++.+||++|+.
T Consensus 27 ~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~ 64 (106)
T PRK07857 27 DAEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMA 64 (106)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555666667778888888899888874
No 103
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.38 E-value=2.5e+02 Score=18.01 Aligned_cols=32 Identities=6% Similarity=0.019 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10035 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIG 65 (102)
Q Consensus 34 d~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~ 65 (102)
.++-+|..+.+.+..++..++.+++.+..+++
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888888877764
No 104
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.32 E-value=3.2e+02 Score=19.16 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=20.9
Q ss_pred CHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10035 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKN 58 (102)
Q Consensus 15 n~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN 58 (102)
..+.+..-|..|--..+ -+|-.|..+-+.+..++++|++.++
T Consensus 67 ~k~~~~~eL~er~E~Le--~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 67 SKEEAVDELEERKETLE--LRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555531111 2455555555566666666655544
No 105
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.10 E-value=2.7e+02 Score=18.34 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=29.6
Q ss_pred hHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
+...|. +.+.|..+|..+..++ +.|+.+..+...+....-..-++...+.+
T Consensus 14 l~~cr~----~le~ve~rL~~~eLs~----------e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 14 LAQCRR----RLEAVESRLRRRELSP----------EARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHH----HHHHHHHHHcccCCCh----------HHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 344566 6777888777776554 34555555555555555555555544444
Done!