Query psy10035
Match_columns 102
No_of_seqs 124 out of 1037
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 16:12:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vbb_A Seryl-tRNA synthetase, 99.8 5.3E-20 1.8E-24 152.5 9.1 74 1-74 1-74 (522)
2 3qne_A Seryl-tRNA synthetase, 99.8 5.6E-19 1.9E-23 145.2 8.3 85 2-86 1-89 (485)
3 3lss_A Seryl-tRNA synthetase; 99.6 3.7E-16 1.3E-20 128.5 9.5 66 1-70 6-73 (484)
4 2dq3_A Seryl-tRNA synthetase; 99.6 2.2E-16 7.5E-21 127.3 7.3 71 2-76 1-72 (425)
5 2dq0_A Seryl-tRNA synthetase; 99.6 3.1E-16 1.1E-20 127.6 8.1 81 2-86 1-87 (455)
6 1wle_A Seryl-tRNA synthetase; 99.6 4.9E-15 1.7E-19 122.1 7.4 67 1-71 39-107 (501)
7 1ses_A Seryl-tRNA synthetase; 99.5 2.6E-15 8.8E-20 121.0 2.5 60 2-66 1-60 (421)
8 2wt7_B Transcription factor MA 91.9 0.64 2.2E-05 30.3 6.4 51 19-69 29-83 (90)
9 3err_A Fusion protein of micro 80.2 7.1 0.00024 32.1 7.9 48 2-54 1-48 (536)
10 2wuj_A Septum site-determining 70.4 4.7 0.00016 23.5 3.2 50 1-58 1-51 (57)
11 2es4_D Lipase chaperone; prote 59.2 42 0.0014 25.9 7.6 49 12-61 246-294 (332)
12 3hnw_A Uncharacterized protein 51.1 38 0.0013 23.0 5.5 34 34-67 96-129 (138)
13 3gpv_A Transcriptional regulat 46.5 62 0.0021 21.5 7.4 29 39-67 100-128 (148)
14 3a5t_A Transcription factor MA 45.8 0.68 2.3E-05 31.0 -4.0 28 34-61 31-58 (107)
15 1nlw_A MAD protein, MAX dimeri 44.9 52 0.0018 20.2 5.2 33 33-65 46-78 (80)
16 2yy0_A C-MYC-binding protein; 44.5 38 0.0013 19.4 4.0 28 36-63 21-48 (53)
17 2zvf_A Alanyl-tRNA synthetase; 38.6 85 0.0029 20.9 6.0 31 30-60 28-58 (171)
18 3viq_B Mating-type switching p 38.2 41 0.0014 21.4 3.8 27 45-71 5-31 (85)
19 3hh0_A Transcriptional regulat 38.2 87 0.003 20.8 6.4 52 37-90 83-134 (146)
20 3ilw_A DNA gyrase subunit A; D 37.2 37 0.0012 27.8 4.2 59 5-66 375-434 (470)
21 2inr_A DNA topoisomerase 4 sub 35.5 33 0.0011 28.3 3.7 21 5-27 413-433 (514)
22 2w83_C C-JUN-amino-terminal ki 34.7 21 0.00071 22.5 1.9 35 32-66 21-55 (77)
23 1h1j_S THO1 protein; SAP domai 34.0 56 0.0019 18.6 3.6 25 17-41 11-40 (51)
24 1nkp_B MAX protein, MYC proto- 32.9 81 0.0028 18.9 5.0 34 33-66 46-79 (83)
25 2xcs_B DNA gyrase subunit B, D 32.7 40 0.0014 28.9 3.9 33 5-39 596-629 (692)
26 3dfg_A Xcrecx, regulatory prot 31.4 47 0.0016 22.5 3.5 25 16-40 34-58 (162)
27 2zqm_A Prefoldin beta subunit 30.6 70 0.0024 19.9 4.0 12 15-26 67-78 (117)
28 1r8e_A Multidrug-efflux transp 30.4 1.4E+02 0.0049 20.9 7.2 31 39-69 84-114 (278)
29 1nkp_A C-MYC, MYC proto-oncoge 29.3 1E+02 0.0035 19.0 5.9 36 33-68 51-86 (88)
30 3ku8_A GYRA14, DNA gyrase subu 29.3 36 0.0012 23.8 2.6 62 5-69 53-149 (156)
31 1avy_A Fibritin, gpwac M; bact 28.8 74 0.0025 19.7 3.7 64 35-98 9-73 (74)
32 2fzt_A Hypothetical protein TM 26.3 1.2E+02 0.0042 18.9 8.3 47 15-61 19-71 (79)
33 1jnm_A Proto-oncogene C-JUN; B 26.0 99 0.0034 17.7 4.8 35 33-67 21-55 (62)
34 1slq_A VP4; beta sandwich, gre 26.0 41 0.0014 25.5 2.5 23 43-65 244-266 (278)
35 3gp4_A Transcriptional regulat 26.0 1.4E+02 0.005 19.6 8.2 27 40-66 87-113 (142)
36 3q0x_A Centriole protein; cent 25.1 96 0.0033 22.9 4.4 48 15-64 161-208 (228)
37 3o3m_B Beta subunit 2-hydroxya 24.5 1.9E+02 0.0066 22.0 6.2 49 5-57 133-184 (385)
38 2yny_A General control protein 23.8 1.6E+02 0.0055 19.3 5.9 37 33-69 68-104 (106)
39 3c1d_A Protein ORAA, regulator 23.8 79 0.0027 21.2 3.5 23 16-38 82-104 (159)
40 2kz3_A Putative uncharacterize 23.8 36 0.0012 21.2 1.6 57 14-72 11-69 (83)
41 3kdq_A Uncharacterized conserv 23.1 65 0.0022 22.3 3.0 45 40-89 10-55 (154)
42 2nov_A DNA topoisomerase 4 sub 22.6 30 0.001 28.5 1.3 21 5-27 389-409 (496)
43 4h22_A Leucine-rich repeat fli 22.1 1.7E+02 0.0059 19.1 5.3 30 38-67 20-49 (103)
44 1lwu_C Fibrinogen gamma chain; 21.8 2.5E+02 0.0087 21.5 6.4 29 40-68 25-53 (323)
45 3w03_C DNA repair protein XRCC 21.5 2E+02 0.0068 20.5 5.4 45 15-64 138-182 (184)
46 1ci6_A Transcription factor AT 21.5 1.3E+02 0.0044 17.4 5.9 34 34-67 23-56 (63)
47 2zet_C Melanophilin; complex, 20.8 66 0.0023 22.1 2.6 9 2-10 11-19 (153)
48 3lay_A Zinc resistance-associa 20.3 1.7E+02 0.0059 20.4 4.8 54 34-88 71-126 (175)
49 2oqq_A Transcription factor HY 20.0 1.3E+02 0.0043 16.7 4.7 29 36-64 5-33 (42)
No 1
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.81 E-value=5.3e-20 Score=152.46 Aligned_cols=74 Identities=64% Similarity=1.083 Sum_probs=68.5
Q ss_pred CcCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCC
Q psy10035 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPV 74 (102)
Q Consensus 1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~ 74 (102)
|||||++||+++|||||.|+++|++||++.+.||+|++||++||++++++|+|++++|.+||+||+++++|+++
T Consensus 1 mmld~~~~r~~~g~n~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~ 74 (522)
T 3vbb_A 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPV 74 (522)
T ss_dssp -CCCGGGSCGGGTCCHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CCcCHHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999988766999999999999999999999999999999999998887653
No 2
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.77 E-value=5.6e-19 Score=145.25 Aligned_cols=85 Identities=41% Similarity=0.628 Sum_probs=76.0
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC----C
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----S 77 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e----~ 77 (102)
||||++||+++|||||.|++++++||++.+.||+|++||++||++++++++|++++|.+||+||+++++|+++++ +
T Consensus 1 Mldi~~ir~~~~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~ 80 (485)
T 3qne_A 1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEK 80 (485)
T ss_dssp CCCGGGGCGGGTCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCChHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 999999999999999999999999999876699999999999999999999999999999999999998877654 4
Q ss_pred CCchhHHhh
Q psy10035 78 STLPGETLN 86 (102)
Q Consensus 78 ~~l~~~~~~ 86 (102)
++|..+|++
T Consensus 81 ~~l~~~i~~ 89 (485)
T 3qne_A 81 EKLSNEKKE 89 (485)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445544443
No 3
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.65 E-value=3.7e-16 Score=128.46 Aligned_cols=66 Identities=42% Similarity=0.787 Sum_probs=62.5
Q ss_pred CcCchHHHhccCCCCH--HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy10035 1 MVLDLDLFRTEKGGDP--EKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKA 70 (102)
Q Consensus 1 mMLDik~IR~~k~gn~--e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~ 70 (102)
|||||++||+ |+ +.|++++++||.+.+.||+|++||++||++++++++|++++|.+||+||++++.
T Consensus 6 mmldi~~~r~----~~~~~~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~ 73 (484)
T 3lss_A 6 MVLDIQLFRD----ETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKA 73 (484)
T ss_dssp CCCCGGGGGS----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHc----CCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999 95 999999999998876699999999999999999999999999999999998884
No 4
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.64 E-value=2.2e-16 Score=127.26 Aligned_cols=71 Identities=30% Similarity=0.462 Sum_probs=66.7
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKN-VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD 76 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~~-~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e 76 (102)
||||++||+ |||.|++++++||++ .+.+++|+++|++||++++++++|++++|.+||+||+++++|+++++
T Consensus 1 mld~~~~r~----~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~ 72 (425)
T 2dq3_A 1 MIDINLIRE----KPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTE 72 (425)
T ss_dssp CCCHHHHHH----CHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTT
T ss_pred CCCHHHHHh----CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHH
Confidence 999999999 999999999999987 76689999999999999999999999999999999998888876655
No 5
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.64 E-value=3.1e-16 Score=127.55 Aligned_cols=81 Identities=27% Similarity=0.456 Sum_probs=70.6
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCC-C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC---
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFK-N-VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD--- 76 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~-~-~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e--- 76 (102)
||||++||+ |||.|++++++||+ + .+.+|+|+++|++||++++++++|++++|.+||+||+++++|+++++
T Consensus 1 mld~~~~r~----n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~ 76 (455)
T 2dq0_A 1 MLDIKLIRE----NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLA 76 (455)
T ss_dssp CCCHHHHHH----CHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHH
T ss_pred CCCHHHHHh----CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 999999999 99999999999998 7 66689999999999999999999999999999999998888876544
Q ss_pred -CCCchhHHhh
Q psy10035 77 -SSTLPGETLN 86 (102)
Q Consensus 77 -~~~l~~~~~~ 86 (102)
+++|..+|++
T Consensus 77 ~~~~~~~~~~~ 87 (455)
T 2dq0_A 77 KSREIVKRIGE 87 (455)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 4444444433
No 6
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.56 E-value=4.9e-15 Score=122.07 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=62.9
Q ss_pred CcCchHHHhccCCCCHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy10035 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKN--VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAK 71 (102)
Q Consensus 1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~--~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~ 71 (102)
|||||++||+ |||.|++++++||++ .+.||+|+++|++||++++++++|++++|.+||+||+++++|
T Consensus 39 pmlD~~~ir~----n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~ 107 (501)
T 1wle_A 39 PLLDMESLCA----YPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQ 107 (501)
T ss_dssp CCCCHHHHHH----SHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHh----CHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7999999999 999999999999986 455899999999999999999999999999999999987765
No 7
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.52 E-value=2.6e-15 Score=120.99 Aligned_cols=60 Identities=13% Similarity=0.343 Sum_probs=58.5
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
||||++||+ |||.|++++++||++.+ +++|+++|++||++++++++|++++|.+||+||+
T Consensus 1 mld~~~~r~----~~~~~~~~~~~r~~~~~-~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 1 MVDLKRLRQ----EPEVFHRAIREKGVALD-LEALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp CCCHHHHHH----CHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHh----CHHHHHHHHHHhCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 99999999999999877 8999999999999999999999999999999987
No 8
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=91.87 E-value=0.64 Score=30.27 Aligned_cols=51 Identities=10% Similarity=0.002 Sum_probs=44.4
Q ss_pred HHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 19 VRKNQKDRFKNV----ELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 19 v~~~L~kR~~~~----~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
.+..|++||+.- -.+++...|..+...+..+++.|+.+...+.+++..++.
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999743 238999999999999999999999999999999987765
No 9
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=80.20 E-value=7.1 Score=32.13 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=33.9
Q ss_pred cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10035 2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFN 54 (102)
Q Consensus 2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lr 54 (102)
|.|++.+|+ .|+.+...-+-.++..+ +...+++.++-.+...++...+
T Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~k 48 (536)
T 3err_A 1 MVDLKRLRQ----EPEVFHRAIREKGVALD-LEALLAVDEQLHKQQEVIADKQ 48 (536)
T ss_dssp --CHHHHHS----CHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHhhhc----ChHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999 99999998888888776 6777777666444444444333
No 10
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=70.35 E-value=4.7 Score=23.53 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=26.5
Q ss_pred CcCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q psy10035 1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIEN-DLKWRQFRHKADNFNKFKN 58 (102)
Q Consensus 1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~L-D~~rR~l~~~~e~Lra~rN 58 (102)
|.|....|++.. |.. ..||++.+-||.++.- ......+..+..+|+.+..
T Consensus 1 M~lTp~dI~~k~------F~~--~~rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 1 MPLTPNDIHNKT------FTK--SFRGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp --CCHHHHTTCC------CCE--ETTEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHhhCc------CCC--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777621 222 3578887768877653 3334444444444444443
No 11
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=59.17 E-value=42 Score=25.94 Aligned_cols=49 Identities=8% Similarity=0.180 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10035 12 KGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61 (102)
Q Consensus 12 k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lS 61 (102)
.|++++.++.. ....+.++.++.+..||.+|..-..+++.-..++..+.
T Consensus 246 ~g~s~~~~~~~-R~~~vG~EaA~RL~~Ldqqra~wq~r~~~Y~~eR~~I~ 294 (332)
T 2es4_D 246 AGATPDQMRAQ-IAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIA 294 (332)
T ss_dssp TTCCHHHHHHH-HHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888855 34667888889999999999999999999999988775
No 12
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.05 E-value=38 Score=22.96 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 34 d~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
.+++.+..+-.++..+++.++.+.|.+.++++.+
T Consensus 96 ~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 96 HELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666543
No 13
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=46.46 E-value=62 Score=21.54 Aligned_cols=29 Identities=7% Similarity=-0.098 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 39 NDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 39 LD~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
|..++..+..++++|+..+..+...|..+
T Consensus 100 l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 100 MKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666655543
No 14
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=45.83 E-value=0.68 Score=30.97 Aligned_cols=28 Identities=7% Similarity=0.138 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10035 34 DKVIENDLKWRQFRHKADNFNKFKNLCS 61 (102)
Q Consensus 34 d~ii~LD~~rR~l~~~~e~Lra~rN~lS 61 (102)
+++..+-..||.++-+.-.-+-....+.
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR~rk~~ 58 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCRVKRVT 58 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667777777777766555555444444
No 15
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=44.88 E-value=52 Score=20.16 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIG 65 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~ 65 (102)
++.|-.|..+...+..+.+.|+.+...+.+++.
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888888999999999988888877764
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.47 E-value=38 Score=19.41 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10035 36 VIENDLKWRQFRHKADNFNKFKNLCSKV 63 (102)
Q Consensus 36 ii~LD~~rR~l~~~~e~Lra~rN~lSK~ 63 (102)
+-.|-.+.-.++.+++.|.++...+..+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555444444443
No 17
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=38.61 E-value=85 Score=20.85 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy10035 30 VELVDKVIENDLKWRQFRHKADNFNKFKNLC 60 (102)
Q Consensus 30 ~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~l 60 (102)
.++.+.+-.|-++++++..++++++.+.-..
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999886554
No 18
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=38.21 E-value=41 Score=21.40 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy10035 45 QFRHKADNFNKFKNLCSKVIGEKMKAK 71 (102)
Q Consensus 45 ~l~~~~e~Lra~rN~lSK~I~~~kk~~ 71 (102)
++..++..|+.++.++.++|..+....
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777777776665543
No 19
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=38.17 E-value=87 Score=20.83 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCCchhHHhhhhHH
Q psy10035 37 IENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGETLNVCWS 90 (102)
Q Consensus 37 i~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e~~~l~~~~~~~~~~ 90 (102)
-.|..++..+..+++.++..+..+...+..+.. .+.-+...+-.-|....|.
T Consensus 83 ~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~--~~~~~~~~~~~Li~~~~~~ 134 (146)
T 3hh0_A 83 RQMHFQREVLLAEQERIAKVLSHMDEMTKKFQK--EERVNVALFSSFLQTFIWE 134 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccchHHHHHHHHHHHHc
Confidence 345666677777777777777777766654433 1111233344445555554
No 20
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=37.22 E-value=37 Score=27.79 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=30.7
Q ss_pred hHHHhccCCCCHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRF-KNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~-~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
|..||..+ +++..++.|..++ ++..-.+.|+++-- +|=...+.+.++.+..++.++|..
T Consensus 375 I~iIr~s~--~~~~a~~~L~~~f~lse~Qa~aIl~mrL-~rLt~le~~kl~~E~~~l~~~i~~ 434 (470)
T 3ilw_A 375 IALIRASE--TVDIARAGLIELLDIDEIQAQAILDMQL-RRLAALERQRIIDDLAKIEAEIAD 434 (470)
T ss_dssp HHHHHHCS--SHHHHHHHHHHHHTCCHHHHHHHHTCBG-GGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC--CHHHHHHHHHHhcCCCHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45677755 6788888888885 44333555554321 111223334444444444444433
No 21
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=35.45 E-value=33 Score=28.31 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=14.4
Q ss_pred hHHHhccCCCCHHHHHHHHHhhC
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRF 27 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~ 27 (102)
|+.||..+ +++.+++.|..++
T Consensus 413 I~iIr~s~--~~~~a~~~L~~~f 433 (514)
T 2inr_A 413 IELIRSSK--NKRDAKENLIEVY 433 (514)
T ss_dssp HHHHHHCC--SHHHHHHHHHTTS
T ss_pred HHHHHcCC--CHHHHHHHHHHhc
Confidence 44567644 6788888888764
No 22
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=34.70 E-value=21 Score=22.49 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 32 LVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 32 ~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
+++.=-+|+--+..++.++|+|-.++-.+.-++..
T Consensus 21 Ll~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s 55 (77)
T 2w83_C 21 LLETKNALNIVKNDLIAKVDELTCEKDVLQGELEA 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34445566667777777777777776666666543
No 23
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=33.97 E-value=56 Score=18.58 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCCCh-----HHHHHHHHHHH
Q psy10035 17 EKVRKNQKDRFKNV-----ELVDKVIENDL 41 (102)
Q Consensus 17 e~v~~~L~kR~~~~-----~~vd~ii~LD~ 41 (102)
..+++-|+.||.+. ++|+.+.+.+.
T Consensus 11 ~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 11 VQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp HHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 67899999999753 45666655544
No 24
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.94 E-value=81 Score=18.94 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
++.|-.|..+...+..+++.|+.+...+..++..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777776666666543
No 25
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=32.73 E-value=40 Score=28.90 Aligned_cols=33 Identities=9% Similarity=0.240 Sum_probs=20.5
Q ss_pred hHHHhccCCCCHHHHHHHHHhhC-CChHHHHHHHHH
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRF-KNVELVDKVIEN 39 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~-~~~~~vd~ii~L 39 (102)
|+.||..+ +++.+++.|..++ ++..-.+.|+++
T Consensus 596 I~iIr~s~--~~~~a~~~L~~~f~lse~Qa~aIL~m 629 (692)
T 2xcs_B 596 ISTIRESD--TDKVAMESLQQRFKLSEKQAQAILDM 629 (692)
T ss_dssp HHHHHTCS--SHHHHHHHHHHHHTCCHHHHHHHHTC
T ss_pred HHHHHhCC--CHHHHHHHHhhccCCCHHHHHHHHHh
Confidence 45667655 7888888888884 333224455444
No 26
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=31.35 E-value=47 Score=22.50 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHH
Q psy10035 16 PEKVRKNQKDRFKNVELVDKVIEND 40 (102)
Q Consensus 16 ~e~v~~~L~kR~~~~~~vd~ii~LD 40 (102)
..+++..|.++|++.+.|+.+|+--
T Consensus 34 ~~EL~~KL~~kg~~~e~Ie~vl~~l 58 (162)
T 3dfg_A 34 KKELNRKLQARGIEPEAAQAAVERL 58 (162)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4678999999999988788887644
No 27
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.55 E-value=70 Score=19.94 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=5.8
Q ss_pred CHHHHHHHHHhh
Q psy10035 15 DPEKVRKNQKDR 26 (102)
Q Consensus 15 n~e~v~~~L~kR 26 (102)
+.+.+...|..|
T Consensus 67 ~~~ea~~~L~~~ 78 (117)
T 2zqm_A 67 TKDKAVAELKEK 78 (117)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 444555555444
No 28
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=30.38 E-value=1.4e+02 Score=20.94 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 39 NDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 39 LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
|..++..+..++++|+..+..+...+.....
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 84 YTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777788888877777776654433
No 29
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.35 E-value=1e+02 Score=19.01 Aligned_cols=36 Identities=6% Similarity=0.033 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~k 68 (102)
++.|-.|..+...+....+.|+.+...+.+++..+.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888888888888889999999999988887654
No 30
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=29.31 E-value=36 Score=23.79 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=41.9
Q ss_pred hHHHhccCCCCHHHHHHHHHhh----------------------------------C-CChHHHHHHHHHHHHHHHHHHH
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDR----------------------------------F-KNVELVDKVIENDLKWRQFRHK 49 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR----------------------------------~-~~~~~vd~ii~LD~~rR~l~~~ 49 (102)
|..||..+ ||+..++.|..| + ++..-.+.|+++-= +|=+..+
T Consensus 53 I~iIR~S~--~~~eAk~~Lm~~~w~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~f~LSe~QA~AILdmRL-~rLT~LE 129 (156)
T 3ku8_A 53 IELIRHAP--TPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRL-QKLTGLE 129 (156)
T ss_dssp HHHHHHCS--SHHHHHHHHHHSCEECTTHHHHGGGSSTTTTSCTTCCTTSEEETTEEECCHHHHHHHHTCBG-GGGSHHH
T ss_pred HHHHHcCC--CHHHHHHHHHhccccchhHHHHHHHhhhhcccccccchhccccccCCCCCHHHHHHHHHhHH-HHhhhHH
Confidence 67788766 788889888853 1 23222455665532 3334557
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q psy10035 50 ADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 50 ~e~Lra~rN~lSK~I~~~kk 69 (102)
.+.+..+.+.+.++|..+..
T Consensus 130 ~~ki~~E~~eL~~~I~~l~~ 149 (156)
T 3ku8_A 130 HEKLLDEYKELLDQIAELLR 149 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999887765
No 31
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.81 E-value=74 Score=19.72 Aligned_cols=64 Identities=11% Similarity=0.021 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC-CCCchhHHhhhhHHHHhhhhcc
Q psy10035 35 KVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD-SSTLPGETLNVCWSVLKHALHP 98 (102)
Q Consensus 35 ~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e-~~~l~~~~~~~~~~~~~~~~~~ 98 (102)
.+-.++..--.+.++++.+....-.+..+|..+..+|--+.. ++-++=-.+.-.|..|..+|.|
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~AP~DG~~YVrkDgaWVlL~t~lnp 73 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVLLSTFLSP 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCEEEETTEEEEGGGGSSC
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHHhcCCCCCCCCCCceeEEecCeeEEeeccccC
Confidence 445566666677777888888888888888777655532221 4444445555667777777766
No 32
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=26.27 E-value=1.2e+02 Score=18.90 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=34.6
Q ss_pred CHHHHHHHHHhh-----CCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHH
Q psy10035 15 DPEKVRKNQKDR-----FKNVELVDKVIENDLKWRQFR-HKADNFNKFKNLCS 61 (102)
Q Consensus 15 n~e~v~~~L~kR-----~~~~~~vd~ii~LD~~rR~l~-~~~e~Lra~rN~lS 61 (102)
|++.+..-|.+| +.+.+.+..|++-|..|...+ ...++|..+.+.+-
T Consensus 19 dyE~L~~LL~kREkLlk~L~~e~l~~i~EkDk~R~~~Ik~~~~~L~q~a~~~r 71 (79)
T 2fzt_A 19 DYETLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIR 71 (79)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666 567777899999999987654 46777777766554
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.04 E-value=99 Score=17.71 Aligned_cols=35 Identities=6% Similarity=0.227 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
.+.+-+|..+...+..+-+.|+.+.+.+..++..+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777777777777777776554
No 34
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=26.03 E-value=41 Score=25.54 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q psy10035 43 WRQFRHKADNFNKFKNLCSKVIG 65 (102)
Q Consensus 43 rR~l~~~~e~Lra~rN~lSK~I~ 65 (102)
|..+..++.+||.+-|.+|.+|+
T Consensus 244 RqDLerql~~LR~eFN~Lsq~iA 266 (278)
T 1slq_A 244 RQDLERQLGELREEFNALSQEIA 266 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999985
No 35
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.96 E-value=1.4e+02 Score=19.60 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035 40 DLKWRQFRHKADNFNKFKNLCSKVIGE 66 (102)
Q Consensus 40 D~~rR~l~~~~e~Lra~rN~lSK~I~~ 66 (102)
..++..+..++++|+..+..+...|..
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~ 113 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDN 113 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555543
No 36
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.11 E-value=96 Score=22.89 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=24.3
Q ss_pred CHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy10035 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVI 64 (102)
Q Consensus 15 n~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I 64 (102)
+-+.++..+..|.-... .++..|...-.+++.+.+.+++..-++-++.
T Consensus 161 sde~Ik~yLa~R~~~lK--~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVK--GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp CHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888852111 3444444444444444444444444433333
No 37
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=24.54 E-value=1.9e+02 Score=22.01 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=38.5
Q ss_pred hHHHhccCCCCHHHHHHHHHhh-C--CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDR-F--KNVELVDKVIENDLKWRQFRHKADNFNKFK 57 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR-~--~~~~~vd~ii~LD~~rR~l~~~~e~Lra~r 57 (102)
+.++++ ....+.+.|.+. | ++.+.+.+.+++..+-|++..++.+|++..
T Consensus 133 ~~y~~~----el~~l~~~LE~~tG~~i~~e~L~eai~~~N~~r~~~~~~~~l~~~~ 184 (385)
T 3o3m_B 133 VKYLIS----EYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKH 184 (385)
T ss_dssp HHHHHH----HHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 566666 666777777654 4 566678999999999999999999998765
No 38
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=23.78 E-value=1.6e+02 Score=19.35 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035 33 VDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK 69 (102)
Q Consensus 33 vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk 69 (102)
=+.|-.+|..-..+..++..+..+.+.+..+|+..++
T Consensus 68 GdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~ 104 (106)
T 2yny_A 68 GSALSALNTSMKQIEDKIEEILSKIYHIENEIARIKK 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3778899999999999999999999999999988775
No 39
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.77 E-value=79 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhCCChHHHHHHHH
Q psy10035 16 PEKVRKNQKDRFKNVELVDKVIE 38 (102)
Q Consensus 16 ~e~v~~~L~kR~~~~~~vd~ii~ 38 (102)
|-.|+..|..+|++.++|++.++
T Consensus 82 ~~~I~~eL~~KGI~~~~i~~al~ 104 (159)
T 3c1d_A 82 PARIRQELNQKGISREATEKAMR 104 (159)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 78899999999999888887765
No 40
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=23.76 E-value=36 Score=21.22 Aligned_cols=57 Identities=9% Similarity=0.032 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhhCCChHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHhcCC
Q psy10035 14 GDPEKVRKNQKDRFKNVELVDKVIENDLKW--RQFRHKADNFNKFKNLCSKVIGEKMKAKE 72 (102)
Q Consensus 14 gn~e~v~~~L~kR~~~~~~vd~ii~LD~~r--R~l~~~~e~Lra~rN~lSK~I~~~kk~~~ 72 (102)
|-++.+.+.|++||+.. +..|+..|... +.+--..+.+.+-++.+++.++.....|.
T Consensus 11 ~Lse~~~~~L~~~~I~T--v~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~~~~ 69 (83)
T 2kz3_A 11 GLTEEMIQLLRSHRIKT--VVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGA 69 (83)
T ss_dssp TCCHHHHHHHHHTTCCC--HHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred CCCHHHHHHHHHCCCCC--HHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcCcHH
Confidence 46788999999999753 56777776433 23333577788888888888765444443
No 41
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=23.08 E-value=65 Score=22.28 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC-CCCchhHHhhhhH
Q psy10035 40 DLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD-SSTLPGETLNVCW 89 (102)
Q Consensus 40 D~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e-~~~l~~~~~~~~~ 89 (102)
=..|..+..++++|+.+++... ....|+.+.+ ..+|-.|+.+++-
T Consensus 10 L~lRadl~kri~qL~~ri~~n~-----~vQEGe~P~edp~~Ll~El~~~~~ 55 (154)
T 3kdq_A 10 LAQRVEAQRRYSELNQLLLDVA-----KVQEGDQPAENPHEILTELEELTT 55 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-----EEETTCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-----eecCCCCCCCCHHHHHHHHHHHHH
Confidence 3567888889999998888775 3456776666 6777777776643
No 42
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=22.61 E-value=30 Score=28.47 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=11.8
Q ss_pred hHHHhccCCCCHHHHHHHHHhhC
Q psy10035 5 LDLFRTEKGGDPEKVRKNQKDRF 27 (102)
Q Consensus 5 ik~IR~~k~gn~e~v~~~L~kR~ 27 (102)
|+.||+.+ +++.+++.|..++
T Consensus 389 I~iIr~s~--~~~~a~~~L~~~f 409 (496)
T 2nov_A 389 IALIRASE--NKADAKENLKVSY 409 (496)
T ss_dssp HHHHTTSS--SHHHHHSSCCC-C
T ss_pred HHHHHhCC--CHHHHHHHHHHhc
Confidence 34456544 5677776666653
No 43
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.12 E-value=1.7e+02 Score=19.11 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 38 ENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 38 ~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
.||.++-.+.++++-|+-........+.++
T Consensus 20 QLDNEKsal~YqVdlLKD~LEe~eE~~aql 49 (103)
T 4h22_A 20 QLDNEKTNFMYQVDTLKDMLLELEEQLAES 49 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444444433
No 44
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.83 E-value=2.5e+02 Score=21.50 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10035 40 DLKWRQFRHKADNFNKFKNLCSKVIGEKM 68 (102)
Q Consensus 40 D~~rR~l~~~~e~Lra~rN~lSK~I~~~k 68 (102)
..+.+.+...++.++.++.++..+|..+.
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555444
No 45
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.52 E-value=2e+02 Score=20.50 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=35.7
Q ss_pred CHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy10035 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVI 64 (102)
Q Consensus 15 n~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I 64 (102)
||..+..-+-.. .++.+.+|..+-..++.+-|.|+.+.|++-+++
T Consensus 138 ~p~e~i~elid~-----~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 138 NPAEVIRELICY-----CLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp CHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566555544332 378999999999999999999999999988775
No 46
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.52 E-value=1.3e+02 Score=17.43 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEK 67 (102)
Q Consensus 34 d~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~ 67 (102)
+..-.|..+-..+..+-++|+.+.+.+..++..+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555544
No 47
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.78 E-value=66 Score=22.11 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=6.8
Q ss_pred cCchHHHhc
Q psy10035 2 VLDLDLFRT 10 (102)
Q Consensus 2 MLDik~IR~ 10 (102)
|+|+.+|.+
T Consensus 11 ~~dLs~Lte 19 (153)
T 2zet_C 11 RLDLSTLTD 19 (153)
T ss_dssp CCCCTTSCH
T ss_pred CCCcccCCH
Confidence 578888876
No 48
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.31 E-value=1.7e+02 Score=20.44 Aligned_cols=54 Identities=4% Similarity=-0.005 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC--CCCchhHHhhhh
Q psy10035 34 DKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD--SSTLPGETLNVC 88 (102)
Q Consensus 34 d~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e--~~~l~~~~~~~~ 88 (102)
++--++++-+.+...+...++.++...-.++..+..+ +++++ +++|..|+.++-
T Consensus 71 EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a-~~~DeakI~aL~~Ei~~Lr 126 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA-SSPDTAKINAVAKEMESLG 126 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHH
Confidence 4555555556666666666666666555566554443 33333 667776666543
No 49
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.03 E-value=1.3e+02 Score=16.74 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy10035 36 VIENDLKWRQFRHKADNFNKFKNLCSKVI 64 (102)
Q Consensus 36 ii~LD~~rR~l~~~~e~Lra~rN~lSK~I 64 (102)
+.+|..+.+++..+..+|..+.+.++.+-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45677788888888888888888877654
Done!