RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10035
(102 letters)
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 41.8 bits (98), Expect = 6e-07
Identities = 9/69 (13%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 3 LDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
+DL R +PE + +++ ++L + ++ D + ++ + + +N +K
Sbjct: 2 VDLKRLRQ----EPEVFHRAIREKGVALDL-EALLALDREVQELKKRLQEVQTERNQVAK 56
Query: 63 VIGEKMKAK 71
+ + +
Sbjct: 57 RVPKAPPEE 65
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 138
Score = 27.1 bits (60), Expect = 0.32
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 42 KWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP 73
+ +H +N + F K + + +K P
Sbjct: 106 RVTNMKHAIENIDTFYKEAEKKLIQVLKGDSP 137
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
synthase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 410
Score = 25.9 bits (57), Expect = 0.83
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 15 DPEKVRKNQKDRFKNVELVDK--VIENDLKWRQFRHKADNFNKFK--NLCSKVI 64
P+ + NQ +R N +D+ + KW + + FK N KVI
Sbjct: 179 YPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVI 232
>d2aq2b1 b.40.2.2 (B:2-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 118
Score = 25.6 bits (56), Expect = 0.84
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 28 KNVELVDKVIENDLKWRQFRHKADNFNKFK-NLCSKVIGEKMKAKE 72
V+ VDK + +DL + K N++K K L ++ + +K K +
Sbjct: 35 TKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEV 80
>d1esfa1 b.40.2.2 (A:1-120) Staphylococcal enterotoxin A, SEA
{Staphylococcus aureus [TaxId: 1280]}
Length = 120
Score = 25.6 bits (56), Expect = 1.0
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 28 KNVELVDKVIENDLKWRQFRHKADNFNKFKN-LCSKVIGEKMKAK 71
+N E D+ +++ + ++ F +N SK I +K K K
Sbjct: 39 ENKESHDQFLQHTILFKGFFTDHSWYNDLLVDFDSKDIVDKYKGK 83
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 25.2 bits (54), Expect = 1.4
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 15 DPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADN-FNKFKNLCSKVIGEK 67
E++ Q R + + D VI+N+ + L S+ + ++
Sbjct: 152 HVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQE 205
>d1bxta1 b.40.2.2 (A:1-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 119
Score = 24.8 bits (54), Expect = 1.4
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 28 KNVELVDKVIENDLKWRQFRHKADNFNKFK-NLCSKVIGEKMKAK 71
NV +++++DL + K N++ K SK + K K K
Sbjct: 36 TNVRSTGQLLQHDLIFPIKDLKLKNYDSVKTEFNSKDLATKYKNK 80
>d3seba1 b.40.2.2 (A:1-121) Staphylococcal enterotoxin B, SEB
{Staphylococcus aureus [TaxId: 1280]}
Length = 121
Score = 24.5 bits (53), Expect = 1.9
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 28 KNVELVDKVIENDLKWRQFRHKADNFNKFK-NLCSKVIGEKMKAKE 72
NV+ +D+ + DL + K N++ + +K + +K K K
Sbjct: 36 INVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKYKDKY 81
>d1xyza_ c.1.8.3 (A:) Xylanase {Clostridium thermocellum, XynZ
[TaxId: 1515]}
Length = 320
Score = 24.5 bits (52), Expect = 3.2
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 36 VIENDLKWRQFRHKADNFN 54
V EN++K+ + + + F+
Sbjct: 42 VCENEMKFDALQPRQNVFD 60
>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas
fimi [TaxId: 1708]}
Length = 312
Score = 24.0 bits (51), Expect = 4.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 36 VIENDLKWRQFRHKADNFN 54
V EN +KW ++F+
Sbjct: 41 VAENAMKWDATEPSQNSFS 59
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 192
Score = 23.8 bits (51), Expect = 4.2
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 6 DLFRTEKGGDPEKVRKN-QKDRFKNVE------LVDKVIEND 40
+ G EKV + ++D + + + +D+++ N+
Sbjct: 151 KILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANN 192
>d1nq6a_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces
halstedii [TaxId: 1944]}
Length = 302
Score = 24.0 bits (51), Expect = 4.5
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 36 VIENDLKWRQFRHKADNFN 54
EN++KW ++F+
Sbjct: 41 TPENEMKWDAVESSRNSFS 59
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella
nidulans (Aspergillus nidulans) [TaxId: 162425]}
Length = 301
Score = 23.5 bits (50), Expect = 5.7
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 36 VIENDLKWRQFRHKADNFN 54
EN +KW NF
Sbjct: 41 TPENSMKWDALEPSQGNFG 59
>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus
aurantiacus [TaxId: 5087]}
Length = 303
Score = 23.5 bits (50), Expect = 5.8
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 36 VIENDLKWRQFRHKADNFN 54
EN +KW NFN
Sbjct: 44 TPENSMKWDATEPSQGNFN 62
>d1vbua1 c.1.8.3 (A:517-840) Xylanase {Thermotoga maritima [TaxId:
2336]}
Length = 324
Score = 23.7 bits (50), Expect = 5.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 36 VIENDLKWRQFRHKADNFN 54
EN +KW + D +N
Sbjct: 43 TPENQMKWDTIHPERDRYN 61
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus
[TaxId: 155077]}
Length = 364
Score = 23.7 bits (50), Expect = 6.0
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 36 VIENDLKWRQFRHKADNFN 54
N +K + NFN
Sbjct: 51 TAGNIMKMSYMQPTEGNFN 69
>d1v0la_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces
lividans [TaxId: 1916]}
Length = 302
Score = 23.6 bits (50), Expect = 6.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 36 VIENDLKWRQFRHKADNFN 54
EN++K + FN
Sbjct: 41 TAENEMKIDATEPQRGQFN 59
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6
[TaxId: 1422]}
Length = 330
Score = 23.6 bits (50), Expect = 6.4
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 36 VIENDLKWRQFRHKADNFN 54
EN +K+ + + F
Sbjct: 41 TAENHMKFEHLQPEEGKFT 59
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]}
Length = 350
Score = 23.6 bits (50), Expect = 6.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 36 VIENDLKWRQFRHKADNFN 54
EN +KW R +N
Sbjct: 40 TPENCMKWGVLRDAQGQWN 58
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6
[TaxId: 1422]}
Length = 371
Score = 23.6 bits (50), Expect = 6.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 36 VIENDLKWRQFRHKADNFN 54
V EN +K + + FN
Sbjct: 48 VAENVMKPISIQPEEGKFN 66
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 23.4 bits (49), Expect = 7.6
Identities = 4/37 (10%), Positives = 8/37 (21%)
Query: 17 EKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNF 53
+ Q + + V+EN
Sbjct: 149 LARERAQMPEEEKRKRATWVLENTGSLEDLERALKAV 185
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 22.4 bits (48), Expect = 8.5
Identities = 4/32 (12%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 26 RFKNVELVDKVIENDLKWRQFRHKADNFNKFK 57
R +++ + ++ +++R+ + DN ++
Sbjct: 45 RSFDLQKSEAMLRKHVEFRK-QKDIDNIISWQ 75
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II
{Escherichia coli [TaxId: 562]}
Length = 348
Score = 23.3 bits (48), Expect = 9.3
Identities = 3/44 (6%), Positives = 8/44 (18%)
Query: 19 VRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
+ + V++ I L +
Sbjct: 37 APAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKR 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.405
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 375,473
Number of extensions: 15374
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 27
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)