Query psy10036
Match_columns 366
No_of_seqs 214 out of 409
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 16:12:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4akf_A VIPD; transferase; 2.90 98.6 2.6E-08 8.9E-13 103.6 5.4 47 9-57 248-300 (577)
2 3tu3_B EXOU; type III secretio 97.9 1.8E-06 6.3E-11 91.1 1.3 43 12-56 321-377 (711)
3 1oxw_A Patatin; alpha/beta cla 97.8 5.6E-06 1.9E-10 81.3 1.9 38 18-57 166-213 (373)
4 2ve8_A FTSK, DNA translocase F 25.9 43 0.0015 26.0 2.7 28 110-137 26-56 (73)
5 4f88_1 Plyca; lysin, bacteriop 11.9 9.5 0.00032 38.2 -4.9 61 165-225 98-159 (465)
6 1e9k_A CAMP specific phosphodi 11.2 91 0.0031 21.2 1.2 11 343-353 2-12 (38)
7 3p1i_A Ephrin type-B receptor 9.7 1.1E+02 0.0036 28.1 1.5 27 243-269 75-115 (200)
8 3etp_A Ephrin type-B receptor 9.2 1.1E+02 0.0039 27.6 1.4 27 243-269 55-95 (187)
9 3rw6_A Nuclear RNA export fact 7.7 2.1E+02 0.0071 26.4 2.6 24 14-41 35-58 (267)
10 2bba_A Ephrin type-B receptor 7.6 1.4E+02 0.0047 27.0 1.3 26 244-269 57-96 (185)
No 1
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila}
Probab=98.60 E-value=2.6e-08 Score=103.55 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=40.3
Q ss_pred ceeecCChh-----hHHHHHhhhcccccccCCCCc-eeCCeEEeeCcccCCCccC
Q psy10036 9 ALVVKPVLI-----SLRQALLASAFVPFFSGFIPP-KFHGVRYMDGGVSDNLPVL 57 (366)
Q Consensus 9 ~is~yFSkg-----ELIqALLAScfIP~yfG~iPp-~frG~~YVDGGlsNNLPv~ 57 (366)
|-.+||+.+ ++.+|+.|||++|+|| .|+ .++|..|+|||+++|.|+.
T Consensus 248 Gk~v~F~~~~~~d~~l~dAVRASsAlP~~F--~PV~~IdG~~yvDGGV~~N~PV~ 300 (577)
T 4akf_A 248 HELERYSEDTTPQQSIAQVVQWSGAHPVLF--VPGRNAKGEYIADGGILDNMPEI 300 (577)
T ss_dssp TEEEEEETTTCTTSBHHHHHHHHTCCTTTB--CCEECTTCCEEECTTSSSCCCCC
T ss_pred CCEEEeCCCCCCCCCHHHHHHHHhCccccc--cCEEeECCEEEECCCcccCCchH
Confidence 445677766 6999999999999999 466 4999999999999999984
No 2
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B*
Probab=97.94 E-value=1.8e-06 Score=91.12 Aligned_cols=43 Identities=28% Similarity=0.222 Sum_probs=20.5
Q ss_pred ecCChh-----hHHHHHhhhcccccccCCCCceeCCe---------EEeeCcccCCCcc
Q psy10036 12 VKPVLI-----SLRQALLASAFVPFFSGFIPPKFHGV---------RYMDGGVSDNLPV 56 (366)
Q Consensus 12 ~yFSkg-----ELIqALLAScfIP~yfG~iPp~frG~---------~YVDGGlsNNLPv 56 (366)
+||+++ ++.+|+.|||++|+|| .|+.|+|+ .|+|||+++|.|+
T Consensus 321 vyFs~~~tPd~~I~dAVRASsSlP~vF--~PV~I~G~~f~~~~e~~~YVDGGIsdNiPI 377 (711)
T 3tu3_B 321 VVFNASHTPDLEVAQAAHISGSFPGVF--QKVSLSDQPYQAGVEWTEFQDGGVMINVPV 377 (711)
T ss_dssp EEESTTTCTTSBHHHHHHHHHHCC------------------------------CCCCG
T ss_pred EEeCCCCCCCchHHHHHHHHhcccccC--CCEEECCccccccccCceEeecCcCCCcCH
Confidence 477764 3789999999999999 68999998 8999999999998
No 3
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=97.79 E-value=5.6e-06 Score=81.30 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=33.7
Q ss_pred hHHHHHhhhcccccccCCCCceeC-----Ce----EEeeCcccC-CCccC
Q psy10036 18 SLRQALLASAFVPFFSGFIPPKFH-----GV----RYMDGGVSD-NLPVL 57 (366)
Q Consensus 18 ELIqALLAScfIP~yfG~iPp~fr-----G~----~YVDGGlsN-NLPv~ 57 (366)
.|.+|+.|||++|+|| .|++++ |+ .|||||+.+ |.|+.
T Consensus 166 ~l~~av~ASsA~P~~F--~p~~i~~~d~~G~~~~~~~vDGGv~~~NnP~~ 213 (373)
T 1oxw_A 166 KMYDISYSTAAAPTYF--PPHYFVTNTSNGDEYEFNLVDGAVATVADPAL 213 (373)
T ss_dssp BHHHHHHHHHCCTTTS--CCEEEEEECTTSCEEEEEEEEGGGGTCSSCHH
T ss_pred hHHHHHHHHccCCcCc--CcEEeeccCCCCcccceeeecCcccccCChHH
Confidence 7999999999999999 577785 64 899999999 99973
No 4
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=25.88 E-value=43 Score=26.05 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=24.3
Q ss_pred CHHHHHHHHHhHHHHHHHH---HHHCCCccc
Q psy10036 110 DPEILSQMCQQGFDDALRF---LSKNNLINC 137 (366)
Q Consensus 110 d~k~L~eif~~GY~DAlrf---Le~ngl~~~ 137 (366)
+...++.-|++||.-|-|. |+++|++..
T Consensus 26 S~S~lQR~lrIGYnRAArlid~lE~~GiVgp 56 (73)
T 2ve8_A 26 SISAVQRKLKIGYNRAARMIEAMEMAGVVTP 56 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSBCC
T ss_pred cHHHHHHHHccChHHHHHHHHHHHHCCcCCc
Confidence 6788999999999999877 667998875
No 5
>4f88_1 Plyca; lysin, bacteriophage, antimicrobial protein, viral protein; 3.30A {Streptococcus phage C1}
Probab=11.89 E-value=9.5 Score=38.18 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=39.6
Q ss_pred CcchhhhhhhhhhhhcC-CCHHHHHHHHHHHHhcCCchHHHhhcCChhHHHHHhhcchhhhH
Q psy10036 165 PECKECIRHREEALVAN-LPPTVKAIFQDAIDSANKGFVNWVFKHRTMRLVSIVSLPYLITV 225 (366)
Q Consensus 165 ~e~~~~~~~~~~~i~~~-Lpp~l~~~l~~A~~~~~~g~~~~~~~~lp~r~~s~l~lP~tLP~ 225 (366)
-||.|+...--..+.|. +||.|.+.-+--..+++.|.+.+|..+||.|----+|+|.|.--
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (465)
T 4f88_1 98 LECLEHDLQYIHGVWETYFPPALSAPECYPATEDNAGALDRFYQSLPGRTWGDVMIPSTMAG 159 (465)
T ss_dssp HHHHHHHHHHHHTTSSSBCCCCSCCTTSCCCCCC--CHHHHHHHHSCSSBHHHHHHHHCHHH
T ss_pred HHHHhhhhHhhhhhhhhcCCcccCCccccCccccccchHHHHHhhCCCCcccceeccccccC
Confidence 45655544433444443 67777655443334568899999999999998888888887643
No 6
>1e9k_A CAMP specific phosphodiesterase PDE4D5; hydrolase; NMR {Homo sapiens} SCOP: j.87.1.1
Probab=11.18 E-value=91 Score=21.21 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=9.8
Q ss_pred CCCCCccCccc
Q psy10036 343 PESDQTGCQHN 353 (366)
Q Consensus 343 ~~~~~~~~~~~ 353 (366)
||+|.|.|.|.
T Consensus 2 pevdnphc~~~ 12 (38)
T 1e9k_A 2 PEVDNPHCPNP 12 (38)
T ss_dssp CCSSCSSSSTH
T ss_pred CCCCCCCCCCc
Confidence 89999999874
No 7
>3p1i_A Ephrin type-B receptor 3; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; 2.10A {Homo sapiens}
Probab=9.74 E-value=1.1e+02 Score=28.12 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=20.1
Q ss_pred ccccccceeeee-------------eeecccCCCCC-CCCc
Q psy10036 243 GTNMKAMNVTEI-------------FDVTEKGDLPP-PSSA 269 (366)
Q Consensus 243 ~~d~~wmq~~ei-------------~~~~~~~s~p~-p~~~ 269 (366)
+.+-+|++|.=| |.+|||.++|- +.++
T Consensus 75 ~~qnNWLRT~~I~R~~A~RvyVEl~FTvRDC~s~p~~~~sC 115 (200)
T 3p1i_A 75 SSQNNWLRTGFIWRRDVQRVYVELKFTVRDCNSIPNIPGSC 115 (200)
T ss_dssp SSCCEEEECCCEECTTCSSEEEEEEEEEBCGGGSTTCCTTC
T ss_pred CCCCceeecCcEECCCccEEEEEEEEeeccccccCCCCCcc
Confidence 556788877444 99999999996 4444
No 8
>3etp_A Ephrin type-B receptor 2; EPH receptor, tyrosine kinase, alternative splicing, ATP- binding, glycoprotein, kinase, membrane, nucleotide- binding; 2.00A {Mus musculus} SCOP: b.18.1.4 PDB: 1nuk_A 1kgy_A 1shw_B*
Probab=9.19 E-value=1.1e+02 Score=27.62 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=19.7
Q ss_pred ccccccceeeee-------------eeecccCCCCC-CCCc
Q psy10036 243 GTNMKAMNVTEI-------------FDVTEKGDLPP-PSSA 269 (366)
Q Consensus 243 ~~d~~wmq~~ei-------------~~~~~~~s~p~-p~~~ 269 (366)
+.+-+|++|.=| |.+|||.++|- +.++
T Consensus 55 ~~qnNWLrT~~I~r~~A~Rv~VEl~FtvRdC~s~p~~~~sC 95 (187)
T 3etp_A 55 SSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSC 95 (187)
T ss_dssp SSCCEEEECCCEECTTCSSEEEEEEEEECCGGGSTTCCTTC
T ss_pred CCCCcceecccEEcCCCcEEEEEEEEeeccccccCCCCCcc
Confidence 456688877444 99999999986 4443
No 9
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=7.72 E-value=2.1e+02 Score=26.42 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=19.0
Q ss_pred CChhhHHHHHhhhcccccccCCCCceeC
Q psy10036 14 PVLISLRQALLASAFVPFFSGFIPPKFH 41 (366)
Q Consensus 14 FSkgELIqALLAScfIP~yfG~iPp~fr 41 (366)
.+++.|++.|..-|.+|++ |+.|+
T Consensus 35 y~k~~ll~~i~~~~~~~f~----p~~~~ 58 (267)
T 3rw6_A 35 YDKAWLLSMIQSKCSVPFT----PIEFH 58 (267)
T ss_dssp SCHHHHHHHHHHTCSSCCC----CEEEE
T ss_pred cCHHHHHHHHHHhCCCCcE----eEEEE
Confidence 5689999999988877754 77765
No 10
>2bba_A Ephrin type-B receptor 4; EPHB4, tumorigenesis, angiogenesis, peptide mimetics, signal protein, structural genomics, PSI-2; 1.65A {Homo sapiens} SCOP: b.18.1.4 PDB: 2hle_A
Probab=7.57 E-value=1.4e+02 Score=26.96 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=18.7
Q ss_pred cccccceeeee-------------eeecccCCCCC-CCCc
Q psy10036 244 TNMKAMNVTEI-------------FDVTEKGDLPP-PSSA 269 (366)
Q Consensus 244 ~d~~wmq~~ei-------------~~~~~~~s~p~-p~~~ 269 (366)
.+-+|++|.=| |.+|||.++|- +.++
T Consensus 57 ~qnNWLrT~~I~r~~A~Ri~VEl~Ft~RdC~s~p~~~~sC 96 (185)
T 2bba_A 57 GQAHWLRTGWVPRRGAVHVYATLRFTMLECLSLPRAGRSC 96 (185)
T ss_dssp TCEEEEECCCEECTTCSSEEEEEEEEEBCGGGSTTCCTTC
T ss_pred CCCCeeccCcEEcCCceEEEEEEEEEeeccccCCCCCCcC
Confidence 45678877433 99999999986 4443
Done!