RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10036
         (366 letters)



>d1e2ta_ d.3.1.5 (A:) Arylamine N-acetyltransferase {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 274

 Score = 29.6 bits (66), Expect = 0.59
 Identities = 12/64 (18%), Positives = 19/64 (29%)

Query: 279 LITIKDEDWTTEYCEQEEYDPEADEEGNNGGIFSDPESEWMTNSSTSSSSPLSSHRSLTL 338
           L     E W + YC       ++D    N      P+S +  +       P     +LT 
Sbjct: 161 LQFRHHEHWQSMYCFDLGVQQQSDHVMGNFWSAHWPQSHFRHHLLMCRHLPDGGKLTLTN 220

Query: 339 TDLR 342
               
Sbjct: 221 FHFT 224


>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium
           loti [TaxId: 381]}
          Length = 270

 Score = 27.6 bits (61), Expect = 2.6
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 283 KDEDWTTEYCEQEEYDPEADEEGNNGGIFSDPESEWMTNS 322
              DW + Y    +   E D    N  + + P S ++++ 
Sbjct: 164 IGGDWRSLYRFDLQPQYEVDYSVTNYFLSTSPTSHFLSSV 203


>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1),
           C-terminal domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 79

 Score = 24.8 bits (54), Expect = 4.9
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 330 LSSHRSLTLTDLRPESDQTGCQHNSRSQA 358
           LS  + +  TD+      T  ++ ++ +A
Sbjct: 14  LSEEKEVIFTDVLKSQANTEPENITKREA 42


>d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041
          {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 75

 Score = 25.0 bits (55), Expect = 5.0
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 14 PVLISLRQALLASAFVPFF 32
           VL+S   ALL  A +   
Sbjct: 10 AVLLSAVGALLDGADIGHL 28


>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B
           (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 24.2 bits (53), Expect = 5.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 94  LSSQNFFRIMRILFPPDPEILSQMCQQ 120
           L +Q  F+ MR +   +P +L  + QQ
Sbjct: 5   LRNQPQFQQMRQIIQQNPSLLPALLQQ 31


>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 84

 Score = 24.4 bits (53), Expect = 7.4
 Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 5/33 (15%)

Query: 107 FPPDPEILSQMCQQGFD-----DALRFLSKNNL 134
              + EI++Q+   GF       A    S   +
Sbjct: 26  PVANEEIVAQLVSMGFSQLHCQKAAINTSNAGV 58


>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675
           {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 186

 Score = 25.5 bits (56), Expect = 8.9
 Identities = 4/32 (12%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 142 AVQSKLIVVQKEN-YQHPDEDEFDPECKECIR 172
            V+  ++ V     ++   + E + E ++ + 
Sbjct: 51  MVEGNIVSVTHHAGFREKGQLELEDEARDALL 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0702    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,402,207
Number of extensions: 65931
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 8
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)