BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10038
(51 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 35/42 (83%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
E+ TP LDG+ILPG+TR IL+L+HQW ++KV+ER +TM D+
Sbjct: 275 ELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDL 316
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 35/42 (83%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
E+ TP LDG+ILPG+TR IL+L+HQW ++KV+ER +TM D+
Sbjct: 255 ELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDL 296
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 1 MEMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51
+E++TP L+G+ILPG+ R S+L+++ W +++V ER ITM +++ E R
Sbjct: 254 LELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGR 304
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 1 MEMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51
+E++TP L+G+ILPG+ R S+L+++ W +++V ER ITM +++ E R
Sbjct: 254 LELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGR 304
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 1 MEMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51
+E++TP L+G+ILPG+ R S+L+++ W +++V ER ITM +++ E R
Sbjct: 254 LELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGR 304
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 1 MEMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51
+E++TP L+G+ILPG+ R S+L+++ W +++V ER ITM +++ E R
Sbjct: 254 LELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGR 304
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 1 MEMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51
+E++TP L+G+ILPG+ R S+L+++ W +++V ER ITM +++ E R
Sbjct: 254 LELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGR 304
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 1 MEMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51
+E++TP L+G+ILPG+ R S+L+++ W +++V ER ITM +++ E R
Sbjct: 254 LELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGR 304
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 3 MITPTLDGLILPGITRMSILELSHQWNDYKVTERKI 38
++TP L G +LPGITR S+L+L+ + V ERKI
Sbjct: 263 LVTPELSGSLLPGITRDSLLQLATD-AGFAVEERKI 297
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 3 MITPTLDGLILPGITRMSILELSHQWNDYKVTERKI 38
++TP L G +LPGITR S+L+L+ + V ERKI
Sbjct: 262 LVTPELSGSLLPGITRDSLLQLATD-AGFAVEERKI 296
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 MITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPD 42
++TP L G +LPGITR S+L+L+ + V ER+I + +
Sbjct: 258 LVTPELSGSLLPGITRDSLLQLAID-AGFAVEERRIDIDE 296
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 28.9 bits (63), Expect = 0.71, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 2 EMITPTLDGLILPGITRMSILELS 25
++ITP+LD IL GITR ++++L+
Sbjct: 189 KLITPSLDSGILDGITRENVIKLA 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,351,546
Number of Sequences: 62578
Number of extensions: 32542
Number of successful extensions: 104
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 13
length of query: 51
length of database: 14,973,337
effective HSP length: 23
effective length of query: 28
effective length of database: 13,534,043
effective search space: 378953204
effective search space used: 378953204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)