Query psy10038
Match_columns 51
No_of_seqs 112 out of 1152
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 16:16:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dtg_A Branched-chain amino ac 99.6 1.4E-15 4.9E-20 93.7 5.3 48 2-50 261-308 (372)
2 2xpf_A 4-amino-4-deoxychorisma 99.5 8E-15 2.7E-19 87.7 5.3 47 2-49 207-253 (292)
3 2coi_A Branched chain aminotra 99.5 8.5E-15 2.9E-19 90.7 5.6 49 2-51 275-324 (386)
4 1i2k_A 4-amino-4-deoxychorisma 99.5 8.1E-15 2.8E-19 86.5 5.2 47 2-49 186-232 (269)
5 2a1h_A Branched chain aminotra 99.5 1.6E-14 5.3E-19 88.8 5.8 49 2-51 255-304 (365)
6 3dth_A Branched-chain amino ac 99.5 2.1E-14 7.2E-19 88.8 5.3 48 2-50 261-308 (372)
7 3csw_A BCAT, putative branched 99.5 1.3E-14 4.4E-19 86.6 4.1 46 2-48 189-234 (285)
8 3lul_A 4-amino-4-deoxychorisma 99.5 1.2E-14 4E-19 86.3 3.7 46 2-48 187-232 (272)
9 3daa_A D-amino acid aminotrans 99.5 1.7E-14 5.8E-19 85.9 4.1 46 2-48 190-235 (277)
10 1iye_A Branched-chain amino ac 99.5 1.2E-14 4E-19 87.1 2.7 47 2-49 207-253 (309)
11 3sno_A Hypothetical aminotrans 99.5 4.9E-14 1.7E-18 85.4 4.6 46 2-48 231-276 (315)
12 2eiy_A ILVE, branched-chain am 99.5 8.3E-14 2.8E-18 83.5 5.3 45 2-48 206-250 (308)
13 3u0g_A Putative branched-chain 99.4 1.9E-13 6.6E-18 83.1 4.7 46 2-49 229-274 (328)
14 3uzo_A Branched-chain-amino-ac 99.4 1.6E-13 5.5E-18 84.4 3.0 46 2-49 253-299 (358)
15 4dqn_A Putative branched-chain 99.4 1.3E-13 4.5E-18 84.4 2.6 46 2-49 238-284 (345)
16 3qqm_A MLR3007 protein; struct 99.2 9.2E-12 3.1E-16 72.1 2.6 41 2-48 165-205 (221)
17 3ceb_A D-aminoacid aminotransf 99.1 1.8E-11 6.2E-16 69.3 2.5 40 2-49 146-185 (194)
18 2zgi_A Putative 4-amino-4-deox 99.1 6.1E-11 2.1E-15 69.3 3.6 40 2-45 172-211 (246)
19 3tql_A Arginine-binding protei 89.6 1.2 3.9E-05 23.6 5.1 41 10-51 21-61 (227)
20 4eq9_A ABC transporter substra 88.1 1.3 4.5E-05 23.8 4.7 41 10-51 26-67 (246)
21 3h7m_A Sensor protein; histidi 86.7 1.1 3.7E-05 23.9 3.8 42 9-51 29-70 (234)
22 4f3p_A Glutamine-binding perip 85.0 1 3.5E-05 24.6 3.2 41 10-51 42-82 (249)
23 2y7i_A STM4351; arginine-bindi 84.9 1.9 6.5E-05 22.9 4.2 40 10-50 25-64 (229)
24 1u6t_A SH3 domain-binding glut 83.6 2.3 7.8E-05 22.5 4.0 38 1-41 2-41 (121)
25 4gvo_A LMO2349 protein; struct 83.6 2.3 7.7E-05 23.3 4.2 46 6-51 20-69 (243)
26 4dz1_A DALS D-alanine transpor 83.5 3.5 0.00012 22.7 5.0 41 10-51 48-88 (259)
27 3kzg_A Arginine 3RD transport 83.4 2.7 9.3E-05 22.6 4.5 42 9-51 22-63 (237)
28 3del_B Arginine binding protei 82.7 2.3 7.9E-05 22.9 4.0 42 9-51 29-70 (242)
29 2q88_A EHUB, putative ABC tran 82.4 2.9 0.0001 22.7 4.4 40 10-50 31-71 (257)
30 3k4u_A Binding component of AB 81.7 2.1 7.3E-05 23.1 3.6 41 10-51 24-64 (245)
31 3kbr_A Cyclohexadienyl dehydra 80.2 2.9 0.0001 22.4 3.8 41 10-51 34-74 (239)
32 3i6v_A Periplasmic His/Glu/Gln 80.0 2.6 8.7E-05 22.9 3.5 41 10-51 24-64 (232)
33 4h5g_A Amino acid ABC superfam 79.8 1.6 5.4E-05 24.0 2.7 39 11-50 35-73 (243)
34 3hv1_A Polar amino acid ABC up 79.0 4 0.00014 22.4 4.2 41 10-51 40-80 (268)
35 3mpk_A Virulence sensor protei 78.9 6.3 0.00022 21.8 5.3 42 9-51 50-92 (267)
36 1ii5_A SLR1257 protein; membra 77.2 5.1 0.00017 21.1 4.2 41 10-51 24-65 (233)
37 1lst_A Lysine, arginine, ornit 77.1 4 0.00014 21.8 3.7 41 10-51 23-63 (239)
38 2pvu_A ARTJ; basic amino acid 77.0 4.3 0.00015 22.4 4.0 41 10-51 60-100 (272)
39 2iee_A ORF2, probable ABC tran 76.1 3.8 0.00013 22.7 3.6 39 11-50 44-82 (271)
40 3lab_A Putative KDPG (2-keto-3 75.1 2.6 8.9E-05 24.4 2.7 30 20-50 97-132 (217)
41 2pyy_A Ionotropic glutamate re 71.9 8.8 0.0003 20.1 4.5 40 10-50 20-60 (228)
42 3qax_A Probable ABC transporte 71.5 6.3 0.00022 21.3 3.7 41 10-51 50-90 (268)
43 4e38_A Keto-hydroxyglutarate-a 71.3 4.8 0.00016 23.4 3.3 31 19-50 117-147 (232)
44 1wdn_A GLNBP, glutamine bindin 67.6 5.7 0.0002 20.8 2.9 40 11-51 22-61 (226)
45 4i62_A Amino acid ABC transpor 66.8 12 0.00041 20.1 4.2 40 11-51 62-101 (269)
46 2h8b_A Insulin-like 3; insulin 66.7 0.028 9.5E-07 22.5 -4.8 18 8-25 7-24 (26)
47 1mqi_A Glutamate receptor 2; G 65.7 5.2 0.00018 21.9 2.5 39 11-50 30-81 (263)
48 2yln_A Putative ABC transporte 65.4 9.5 0.00033 21.3 3.7 41 10-51 76-116 (283)
49 2l09_A ASR4154 protein; proto- 61.8 12 0.0004 17.7 3.1 33 11-48 18-50 (62)
50 2kyr_A Fructose-like phosphotr 55.7 12 0.00039 19.6 2.6 36 11-47 17-62 (111)
51 3iez_A RAS GTPase-activating-l 53.8 9.9 0.00034 19.9 2.2 21 30-50 70-90 (114)
52 3bzy_B ESCU; auto cleavage pro 50.6 12 0.00043 18.4 2.2 29 15-44 26-54 (83)
53 3zua_A CLD, alpha-hemolysin tr 48.9 15 0.00053 18.8 2.5 31 14-45 44-74 (142)
54 2ct6_A SH3 domain-binding glut 48.0 25 0.00086 17.4 3.5 21 20-41 29-49 (111)
55 2kru_A Light-independent proto 45.5 21 0.00072 16.9 2.4 31 13-48 21-51 (63)
56 1g4d_A Repressor protein C; pr 45.3 1.2 4.2E-05 21.4 -2.0 24 12-36 12-37 (69)
57 2r48_A Phosphotransferase syst 44.5 23 0.0008 18.2 2.7 36 11-47 14-59 (106)
58 3tsm_A IGPS, indole-3-glycerol 43.6 42 0.0014 19.8 4.0 38 12-50 152-189 (272)
59 2r4q_A Phosphotransferase syst 43.0 23 0.0008 18.2 2.6 37 10-47 13-59 (106)
60 3isu_A RAS GTPase-activating-l 42.6 6.9 0.00024 20.8 0.5 21 30-50 73-93 (121)
61 2vt1_B Surface presentation of 41.6 14 0.00047 18.7 1.5 29 15-44 26-54 (93)
62 2v3u_A Glutamate receptor delt 39.6 26 0.00091 18.8 2.6 27 11-38 27-53 (265)
63 2kng_A Protein LSR2; DNA-bindi 39.0 10 0.00034 17.6 0.7 29 17-46 14-42 (55)
64 1t1v_A SH3BGRL3, SH3 domain-bi 38.3 34 0.0011 16.1 3.8 22 19-41 22-43 (93)
65 1pii_A N-(5'phosphoribosyl)ant 38.0 64 0.0022 20.5 4.4 39 11-50 139-177 (452)
66 3g3k_A Glutamate receptor, ion 37.9 27 0.00091 18.9 2.5 27 11-38 30-56 (259)
67 3c01_E Surface presentation of 37.8 18 0.00062 18.4 1.6 29 15-44 26-54 (98)
68 3t7y_A YOP proteins translocat 37.2 17 0.00059 18.4 1.5 29 15-44 41-69 (97)
69 2m1z_A LMO0427 protein; homolo 33.3 20 0.00069 18.4 1.4 36 11-47 14-59 (106)
70 3v7e_A Ribosome-associated pro 33.1 44 0.0015 15.9 3.2 30 16-47 40-69 (82)
71 1wbh_A KHG/KDPG aldolase; lyas 32.7 68 0.0023 17.9 3.7 31 19-50 99-129 (214)
72 2yjp_A Putative ABC transporte 31.1 46 0.0016 18.5 2.8 41 10-50 74-116 (291)
73 2l8n_A Transcriptional repress 31.1 27 0.00091 16.1 1.5 22 12-34 35-56 (67)
74 1xt8_A Putative amino-acid tra 30.7 71 0.0024 17.6 3.8 41 10-50 63-105 (292)
75 1vhc_A Putative KHG/KDPG aldol 30.4 57 0.002 18.5 3.1 31 19-50 100-130 (224)
76 4a29_A Engineered retro-aldol 30.2 89 0.003 18.5 4.0 38 12-50 136-173 (258)
77 3lvu_A ABC transporter, peripl 30.1 73 0.0025 17.5 4.1 31 19-50 146-176 (258)
78 2qho_B E3 ubiquitin-protein li 30.1 9.2 0.00032 17.5 -0.2 22 11-33 18-39 (53)
79 1i4n_A Indole-3-glycerol phosp 29.6 86 0.003 18.2 4.4 36 13-49 134-169 (251)
80 3q58_A N-acetylmannosamine-6-p 29.3 81 0.0028 17.8 3.9 32 18-50 118-149 (229)
81 4gud_A Imidazole glycerol phos 29.2 62 0.0021 17.4 3.0 27 19-47 16-42 (211)
82 1mxs_A KDPG aldolase; 2-keto-3 29.1 69 0.0023 18.1 3.3 31 19-50 109-139 (225)
83 2vha_A Periplasmic binding tra 28.8 76 0.0026 17.3 4.0 40 10-50 36-82 (287)
84 1x0h_A P195, RAS GTPase-activa 28.7 23 0.00078 18.3 1.1 21 30-50 58-78 (112)
85 3pam_A Transmembrane protein; 27.9 81 0.0028 17.4 4.7 31 19-50 145-175 (259)
86 3bzs_A ESCU; auto cleavage pro 27.8 34 0.0012 18.4 1.7 29 15-44 80-108 (137)
87 3u5e_c L32, RP73, YL38, 60S ri 27.7 63 0.0022 16.0 2.9 32 15-47 50-81 (105)
88 1e2b_A Enzyme IIB-cellobiose; 27.5 44 0.0015 16.7 2.1 35 10-45 12-46 (106)
89 2pjp_A Selenocysteine-specific 27.5 24 0.00083 17.8 1.1 20 15-35 91-113 (121)
90 3igs_A N-acetylmannosamine-6-p 27.2 90 0.0031 17.6 3.9 32 18-50 118-149 (232)
91 3qja_A IGPS, indole-3-glycerol 26.9 99 0.0034 18.0 4.8 36 14-50 147-182 (272)
92 1yae_A Glutamate receptor, ion 26.7 25 0.00086 19.9 1.1 27 10-37 38-64 (312)
93 2jli_A YSCU, YOP proteins tran 26.6 36 0.0012 18.0 1.7 29 15-44 70-98 (123)
94 4asn_A TUBR; transcription, tu 26.5 9.3 0.00032 19.4 -0.6 30 20-50 18-47 (101)
95 3b1s_B Flagellar biosynthetic 32.4 14 0.00047 18.4 0.0 29 15-44 26-54 (87)
96 1pb7_A N-methyl-D-aspartate re 26.2 20 0.00067 20.3 0.6 26 12-38 62-87 (292)
97 2jlj_A YSCU, YOP proteins tran 26.2 36 0.0012 18.4 1.7 29 15-44 79-107 (144)
98 3l6g_A Betaine ABC transporter 25.8 97 0.0033 17.5 4.4 28 23-51 23-50 (256)
99 3by5_A Cobalamin biosynthesis 25.7 79 0.0027 17.2 3.0 25 20-47 55-79 (155)
100 2yh9_A Small protein A, BAME p 25.6 24 0.00082 17.0 0.8 24 3-26 4-27 (88)
101 1uxc_A FRUR (1-57), fructose r 25.6 38 0.0013 15.5 1.5 22 12-34 29-50 (65)
102 2yw3_A 4-hydroxy-2-oxoglutarat 25.3 93 0.0032 17.2 3.6 30 20-50 95-124 (207)
103 2w6k_A COBE; biosynthetic prot 25.3 67 0.0023 17.1 2.6 25 20-47 59-83 (145)
104 3fau_A NEDD4-binding protein 2 25.0 63 0.0022 15.1 2.6 21 14-35 49-71 (82)
105 2pby_A Glutaminase; secsg, rik 24.0 47 0.0016 20.2 2.0 30 1-32 276-306 (308)
106 1g55_A DNA cytosine methyltran 24.0 73 0.0025 18.9 2.9 31 12-43 123-153 (343)
107 3j21_Z 50S ribosomal protein L 23.9 51 0.0018 16.1 1.9 31 15-46 43-73 (99)
108 2v25_A Major cell-binding fact 23.7 79 0.0027 16.6 2.8 41 10-50 58-100 (259)
109 2lqo_A Putative glutaredoxin R 23.7 52 0.0018 15.9 1.9 21 20-41 19-39 (92)
110 1wa3_A 2-keto-3-deoxy-6-phosph 23.6 94 0.0032 16.6 3.1 30 20-50 95-124 (205)
111 2zkr_i 60S ribosomal protein L 23.5 38 0.0013 18.8 1.4 39 8-50 120-158 (165)
112 1r57_A Conserved hypothetical 22.8 70 0.0024 14.8 3.0 31 4-35 43-73 (102)
113 1mki_A Probable glutaminase YB 22.7 52 0.0018 20.3 2.0 30 1-32 298-328 (330)
114 3brd_D Protein LIN-12; protein 22.6 24 0.00081 14.1 0.3 8 3-10 16-23 (29)
115 1g2y_A Hepatocyte nuclear fact 21.9 20 0.0007 14.7 0.1 11 15-25 20-30 (32)
116 3ado_A Lambda-crystallin; L-gu 21.9 1.4E+02 0.0047 17.9 4.2 33 14-47 14-46 (319)
117 2gfq_A UPF0204 protein PH0006; 21.8 72 0.0025 19.3 2.5 25 10-35 271-295 (298)
118 1yqe_A Hypothetical UPF0204 pr 21.0 78 0.0027 18.9 2.5 26 9-35 246-271 (282)
119 2b4l_A Glycine betaine-binding 21.0 1.3E+02 0.0044 17.3 3.5 28 23-51 186-213 (268)
120 3ktb_A Arsenical resistance op 20.8 99 0.0034 15.9 4.4 37 1-38 7-51 (106)
121 1oyi_A Double-stranded RNA-bin 20.4 76 0.0026 15.5 2.1 14 16-30 17-30 (82)
122 3b0z_B Flagellar biosynthetic 25.4 22 0.00075 18.6 0.0 29 15-44 26-54 (114)
No 1
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=99.59 E-value=1.4e-15 Score=93.69 Aligned_cols=48 Identities=38% Similarity=0.623 Sum_probs=45.0
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
+++|||++.++|+||||++|+++|+++ |++|+|+.|+++||.+|.+.|
T Consensus 261 ~liTPpl~~~iL~GITR~sVi~LA~~~-Gi~V~Er~it~~El~~A~~~~ 308 (372)
T 3dtg_A 261 RLVTPELSGSLLPGITRDSLLQLATDA-GFAVEERKIDVDEWQKKAGAG 308 (372)
T ss_dssp EEEECCCCSSSCCCHHHHHHHHHHHHH-TCEEEECCCBHHHHHHHHHHT
T ss_pred eEEeCCccccccccHHHHHHHHHHHHC-CceEEEEeCCHHHHHHHhhcC
Confidence 589999999999999999999999999 899999999999999996554
No 2
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=99.54 E-value=8e-15 Score=87.72 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=44.7
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+|||++.++|+||||+.+++++++. |++|+|++++++||.+|||.
T Consensus 207 ~l~TPpl~~~iL~GitR~~vl~~a~~~-G~~v~E~~i~~~eL~~adev 253 (292)
T 2xpf_A 207 TLVAPDLRRCGVAGVMRAELLERAEGI-GVPLAIRDVSMAELATADEV 253 (292)
T ss_dssp EEEEECCSSSSBCCHHHHHHHHHHHHT-TCCEEEECBCHHHHHTCSEE
T ss_pred EEEeCCCCCccCCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHhCCEE
Confidence 589999999999999999999999999 89999999999999999873
No 3
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=99.54 E-value=8.5e-15 Score=90.71 Aligned_cols=49 Identities=51% Similarity=0.854 Sum_probs=45.9
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhh-CCCCeEEEEecCHHHHhchhhhCC
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQ-WNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~-~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
+|+|||++.++|+||||++|+++|++ . |++|+|+.|+++||.+|+++|+
T Consensus 275 ~l~TP~l~~~iL~GITR~~vl~la~~~~-G~~V~Er~i~~~eL~~A~~~g~ 324 (386)
T 2coi_A 275 ELATPPLDGIILPGVTRRCILDLAHQWG-EFKVSERYLTMDDLTTALEGNR 324 (386)
T ss_dssp EEEECCCSSSSCCCHHHHHHHHHHHHHC-SSEEEECCCBHHHHHHHHTTTC
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHhcc-CCcEEEEECCHHHHHHHHhcCC
Confidence 69999999999999999999999999 7 8999999999999999977764
No 4
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=99.54 E-value=8.1e-15 Score=86.49 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=44.7
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+|||++.++|+||||+.++++|++. |++|+|+.++++||.+|||.
T Consensus 186 ~l~TP~~~~~iL~GitR~~ll~~a~~~-g~~v~e~~i~~~eL~~adev 232 (269)
T 1i2k_A 186 VVYTPRLDQAGVNGIMRQFCIRLLAQS-SYQLVEVQASLEESLQADEM 232 (269)
T ss_dssp EEEEECCSSSSBCCHHHHHHHHHHHHS-SSEEEEECCBHHHHHTCSEE
T ss_pred EEECCCCccCccCCHHHHHHHHHHHHc-CCeEEEEECCHHHHhhCCEE
Confidence 589999999999999999999999999 89999999999999999873
No 5
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=99.52 E-value=1.6e-14 Score=88.80 Aligned_cols=49 Identities=41% Similarity=0.815 Sum_probs=45.0
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhh-CCCCeEEEEecCHHHHhchhhhCC
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQ-WNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~-~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
+|+|||++.++|+||||++|+++|++ . |++|+|+.++++||.+|+++|+
T Consensus 255 ~l~TP~l~~~iL~GITR~~vl~la~~~~-G~~v~Er~i~~~eL~~A~~~g~ 304 (365)
T 2a1h_A 255 ELVTPPLNGVILPGVVRQSLLDMAQTWG-EFRVVERTITMKQLLRALEEGR 304 (365)
T ss_dssp EEEECCCSSSSCCCHHHHHHHHHHHHHT-SSEEEECCCBHHHHHHHHHTTC
T ss_pred EEEeCCCCCCccccHHHHHHHHHHHhcC-CCceEEEeCCHHHHHHHHhcCC
Confidence 49999999999999999999999998 6 7999999999999999966653
No 6
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=99.51 E-value=2.1e-14 Score=88.80 Aligned_cols=48 Identities=38% Similarity=0.623 Sum_probs=45.0
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
+|+|||++.++|+||||++|+++|+++ |++|+|++|+++||.+|.++|
T Consensus 261 ~l~TP~l~~~iL~GITR~~vl~la~~~-G~~v~Er~i~~~eL~~a~~~g 308 (372)
T 3dth_A 261 RLVTPELSGSLLPGITRDSLLQLATDA-GFAVEERKIDVDEWQKKAGAG 308 (372)
T ss_dssp EEEECCCCSSSCCCHHHHHHHHHHHHH-TCEEEECCCBHHHHHHHHHHT
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHhhhhcC
Confidence 699999999999999999999999999 899999999999999995554
No 7
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=99.50 E-value=1.3e-14 Score=86.61 Aligned_cols=46 Identities=33% Similarity=0.545 Sum_probs=44.2
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+|+|||++.++|+||||+.+++++++. |++|+|++++++||.+|||
T Consensus 189 ~l~TP~l~~~iL~GitR~~ll~~a~~~-g~~v~E~~i~~~dL~~ade 234 (285)
T 3csw_A 189 KLITPSLDSGILDGITRENVIKLAKSL-EIPVEERVVWVWELFEADE 234 (285)
T ss_dssp EEEEECGGGTCCCCHHHHHHHHHHHHT-TCCEEEECCBHHHHHTCSE
T ss_pred EEEeCCCCCCccCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHhhCCE
Confidence 589999999999999999999999999 8999999999999999987
No 8
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=99.50 E-value=1.2e-14 Score=86.31 Aligned_cols=46 Identities=30% Similarity=0.428 Sum_probs=44.3
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+|+|||++.++|+||||+.++++|++. |++|+|++++++||.+|||
T Consensus 187 ~l~TP~l~~~iL~GitR~~ll~la~~~-g~~v~e~~i~~~el~~ade 232 (272)
T 3lul_A 187 ILYTPRVEDGILPGITRARLISHCQQH-KMSVQEISLTKKRIEDADA 232 (272)
T ss_dssp EEEECCGGGTCCCCHHHHHHHHHHHHT-TCCEEECCCBHHHHHTCSE
T ss_pred EEECCCCccCcCcCHHHHHHHHHHHHc-CCeEEEEECCHHHHhhCCE
Confidence 589999999999999999999999999 8999999999999999987
No 9
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=99.49 E-value=1.7e-14 Score=85.86 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=44.3
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+|+|||++.++|+||||+.+++++++. |++|+|++++++||.+|||
T Consensus 190 ~l~TP~~~~~iL~GitR~~vl~~~~~~-g~~v~e~~i~~~el~~ade 235 (277)
T 3daa_A 190 ILYTHPANNMILKGITRDVVIACANEI-NMPVKEIPFTTHEALKMDE 235 (277)
T ss_dssp EEEECCSSTTSCCCHHHHHHHHHHHHT-TCCEECCCCBHHHHHTCSE
T ss_pred EEECCCCcCCCCccHHHHHHHHHHHHc-CCeEEEEeCCHHHHHhcCe
Confidence 589999999999999999999999999 8999999999999999987
No 10
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=99.48 E-value=1.2e-14 Score=87.13 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=44.6
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+++.++|+||||+.++++|++. |++|+|+.++++||.+|||.
T Consensus 207 ~l~TP~l~~~iL~GitR~~ll~~a~~~-g~~v~E~~i~~~eL~~adev 253 (309)
T 1iye_A 207 VLFTPPFTSSALPGITRDAIIKLAKEL-GIEVREQVLSRESLYLADEV 253 (309)
T ss_dssp EEEECCGGGTCCCCHHHHHHHHHHHHT-TCCEEECCCBTTHHHHCSEE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHhhCcEE
Confidence 589999999999999999999999999 89999999999999999873
No 11
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=99.46 E-value=4.9e-14 Score=85.39 Aligned_cols=46 Identities=22% Similarity=0.485 Sum_probs=38.4
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+|+|||++.++|+||||+.+++++++. |++|+|+.++++||.+|||
T Consensus 231 ~l~TPp~~~~iL~GitR~~ll~~a~~~-g~~v~e~~i~~~eL~~ade 276 (315)
T 3sno_A 231 KIRTPSPGGDILPGTTQAALFAHATEK-GWRCKEKDLSIDDLFGADS 276 (315)
T ss_dssp EEEEECCC------HHHHHHHHHHHHT-TCEEEEECCBHHHHHHSSE
T ss_pred EEEcCCCCCCcChhHHHHHHHHHHHHc-CCEEEEEECCHHHHHhCCe
Confidence 589999999999999999999999999 8999999999999999987
No 12
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=99.46 E-value=8.3e-14 Score=83.49 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=43.2
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+|+||+++. +|+||||+.++++|++. |++|+|+.++++||.+|||
T Consensus 206 ~l~TP~~~~-iL~GitR~~ll~~a~~~-g~~v~E~~i~~~dL~~ade 250 (308)
T 2eiy_A 206 VIYALEHSV-NLEGITRDSVIRIAKDL-GYEVQVVRATRDQLYMADE 250 (308)
T ss_dssp EEEEECCTT-SCCCHHHHHHHHHHHHT-TCCEEEECCCHHHHHTCSE
T ss_pred EEEeCCcCC-CCchHHHHHHHHHHHHC-CCeEEEEeCCHHHHhhCCE
Confidence 589999998 99999999999999999 8999999999999999987
No 13
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=99.41 E-value=1.9e-13 Score=83.13 Aligned_cols=46 Identities=28% Similarity=0.483 Sum_probs=43.5
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+|||++. +|+||||+.++++|++. |++|+|+.++++||.+|||.
T Consensus 229 ~l~TP~~~~-iL~GitR~~vl~~a~~~-g~~v~e~~i~~~eL~~adev 274 (328)
T 3u0g_A 229 KLYTPDLAS-CLDGITRDTVITLAKEA-GIEVIEKRITRDEVYTADEA 274 (328)
T ss_dssp EEEECCSSS-SCCCHHHHHHHHHHHHT-TCCEEECCCCHHHHHTCSEE
T ss_pred EEEeCCccc-cchHHHHHHHHHHHHHc-CCeEEEEeCCHHHHhhCCEE
Confidence 589999988 99999999999999999 89999999999999999873
No 14
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=99.38 E-value=1.6e-13 Score=84.42 Aligned_cols=46 Identities=30% Similarity=0.509 Sum_probs=43.3
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhh-CCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQ-WNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~-~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+ +.++|+||||++++++|++ + |++|+|++++++||.+|||.
T Consensus 253 ~l~TP~-~~~iL~GItR~~vl~la~~~~-g~~v~e~~i~~~eL~~adEv 299 (358)
T 3uzo_A 253 KFVTPQ-SPSILPSITKYSLLWLAEHRL-GLEVEEGDIRIDELGKFSEA 299 (358)
T ss_dssp EEEEEC-CTTSCCCHHHHHHHHHHHHTT-CCEEEEECCBTTCGGGEEEE
T ss_pred EEEECC-cCCcccCHHHHHHHHHHHhhc-CCeEEEEECCHHHHHhhcce
Confidence 489999 8899999999999999999 8 89999999999999999874
No 15
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=99.38 E-value=1.3e-13 Score=84.38 Aligned_cols=46 Identities=28% Similarity=0.509 Sum_probs=43.4
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhh-CCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQ-WNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~-~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||+ +.++|+||||++++++|++ . |++|+|++++++||.+|||.
T Consensus 238 ~l~TP~-~~~iL~GitR~~vl~la~~~~-g~~v~e~~i~~~el~~adev 284 (345)
T 4dqn_A 238 EFITPL-SPSILPSVTKYSLLYLAEHRF-GMKAIEGDVCVDELDKFVEA 284 (345)
T ss_dssp EEEECC-CTTSCCCHHHHHHHHHHHHTT-CCEEEECCCBTTCGGGEEEE
T ss_pred EEEeCC-CCCccHHHHHHHHHHHHHhcc-CCeEEEEeCCHHHHHhhhHH
Confidence 589999 9999999999999999999 8 89999999999999999873
No 16
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=99.18 E-value=9.2e-12 Score=72.14 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=37.7
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+|+|||++.++|+||||+.+++++ +|+|+.++++||.+|||
T Consensus 165 ~l~TP~~~~~~L~GitR~~ll~~~------~v~e~~i~~~~L~~ade 205 (221)
T 3qqm_A 165 VLATPRLDCGLLPGVLRAELLDEG------RAEEAIYSYDDLKSAKA 205 (221)
T ss_dssp CEEEECGGGTCCCCHHHHHHHHTT------SEEEECCCHHHHTTCSE
T ss_pred EEECCCCccCcchHHHHHHHHhhC------cEEEEeCCHHHHHhCCE
Confidence 489999999999999999999844 69999999999999986
No 17
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=99.13 E-value=1.8e-11 Score=69.35 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=36.3
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
+|+||| .++|+||||+.+++ +++|+|++++++||.+|||.
T Consensus 146 ~l~TP~--~~~L~GitR~~ll~------~~~v~e~~i~~~eL~~adev 185 (194)
T 3ceb_A 146 QWITPD--KPLLEGTQRAKLLE------QKKIIAREIFFEDLAQYEEI 185 (194)
T ss_dssp EEEEES--SCSSCCHHHHHHHH------TTSSEEECCBGGGGGGCSCE
T ss_pred EEECCC--CCCcChHHHHHHHc------CCCEEEecCCHHHHhhccEE
Confidence 589999 68999999999997 47899999999999999873
No 18
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=99.10 E-value=6.1e-11 Score=69.30 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=37.5
Q ss_pred EEEecCCCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhc
Q psy10038 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQ 45 (51)
Q Consensus 2 ~~~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ 45 (51)
+|+|| .++|+||||+.+++++++. |++|+|++++++||.+
T Consensus 172 ~l~TP---~~iL~GitR~~ll~~a~~~-g~~v~E~~i~~~dL~~ 211 (246)
T 2zgi_A 172 TLYLL---EGGLEGITREKVAEAARGL-GLRVERGLFRPEGLRG 211 (246)
T ss_dssp EEEEE---CSSCCCHHHHHHHHHHHHT-TCEEEEECCCGGGCCS
T ss_pred EEECC---CCccCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHh
Confidence 58999 7899999999999999999 8999999999999876
No 19
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=89.61 E-value=1.2 Score=23.61 Aligned_cols=41 Identities=7% Similarity=-0.005 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-..|+.-+.+-.++++. |++++....+..++..+=++|+
T Consensus 21 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 61 (227)
T 3tql_A 21 SGQVEGFGADIVKAVCKQM-QAVCTISNQPWDSLIPSLKLGK 61 (227)
T ss_dssp -CCEESHHHHHHHHHHHHT-TCEEEEEECCHHHHHHHHHHTS
T ss_pred CCCcccchHHHHHHHHHHh-CCeEEEEeCCHHHHHHHHhCCC
Confidence 5667899999999999999 8999999999998887766663
No 20
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=88.12 E-value=1.3 Score=23.82 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=35.3
Q ss_pred CCCcccHHHHHHHHHhhhCCC-CeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWND-YKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g-~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-+.|+.-+.+-.++++. | ++++...++..++..+=++|+
T Consensus 26 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~~l~~g~ 67 (246)
T 4eq9_A 26 NGELTGYEIEVVRAIFKDS-DKYDVKFEKTEWSGVFAGLDADR 67 (246)
T ss_dssp TTEEESHHHHHHHHHHTTC-SSEEEEEEECCHHHHHHHHHTTS
T ss_pred CCCCcccHHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhCCC
Confidence 5668899999999999999 9 999999999999887766663
No 21
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=86.65 E-value=1.1 Score=23.89 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=35.3
Q ss_pred CCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 9 DGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 9 ~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
..+-..|+.-+.+-.++++. |++++....+..++..+=++|+
T Consensus 29 ~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 70 (234)
T 3h7m_A 29 QNGKPAGYNVELTRAIAEVM-GMTVEFRLGAWSEMFSALKSGR 70 (234)
T ss_dssp TTSCEESHHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHTTS
T ss_pred CCCCEeeeEHHHHHHHHHHc-CCceEEEeCCHHHHHHHHhCCC
Confidence 45678999999999999999 8999999988888877766653
No 22
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=85.04 E-value=1 Score=24.59 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-+.|+.-+.+-.++++. |++++...++..++..+-++|+
T Consensus 42 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 82 (249)
T 4f3p_A 42 GDKYVGFDLDLWAEIAKGA-GWTYKIQPMDFAGLIPALQTQN 82 (249)
T ss_dssp TTEEESHHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHTTS
T ss_pred CCeEEEEhHHHHHHHHHHc-CCceEEEecCHHHHHHHHHCCC
Confidence 5678899999999999999 8999999998888777666653
No 23
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=84.86 E-value=1.9 Score=22.88 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=33.4
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+-+.|+.-+.+-.++++. |++++....+..++..+=++|
T Consensus 25 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g 64 (229)
T 2y7i_A 25 DNKIVGFDIDVANAVCKEM-QAECSFTNQSFDSLIPSLRFK 64 (229)
T ss_dssp TSCEESHHHHHHHHHHHHT-TCEEEEEECCGGGHHHHHHTT
T ss_pred CCCCcceeHHHHHHHHHHh-CCeEEEEEcCHHHHHHHHhCC
Confidence 4668899999999999999 899999988887777666555
No 24
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=83.60 E-value=2.3 Score=22.47 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=25.3
Q ss_pred CEEEecCCCCCCcccHH--HHHHHHHhhhCCCCeEEEEecCHH
Q psy10038 1 MEMITPTLDGLILPGIT--RMSILELSHQWNDYKVTERKITMP 41 (51)
Q Consensus 1 ~~~~TP~l~~~~L~Git--R~~ll~~~~~~~g~~v~e~~i~~~ 41 (51)
+++||-+.... .-|. -..+..++.+. |++++|..|+.+
T Consensus 2 V~vYtt~~c~~--c~~kk~c~~aK~lL~~k-gV~feEidI~~d 41 (121)
T 1u6t_A 2 IRVYIASSSGS--TAIKKKQQDVLGFLEAN-KIGFEEKDIAAN 41 (121)
T ss_dssp EEEEECTTCSC--HHHHHHHHHHHHHHHHT-TCCEEEEECTTC
T ss_pred EEEEecCCCCC--ccchHHHHHHHHHHHHC-CCceEEEECCCC
Confidence 36788654322 1111 15777899999 899999999854
No 25
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=83.59 E-value=2.3 Score=23.34 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=35.8
Q ss_pred cCC----CCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 6 PTL----DGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 6 P~l----~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
||. .+|-+.|+.-+.+-++++++.|++++....+.+.+..+=++|+
T Consensus 20 pP~~~~d~~G~~~G~~vdl~~~ia~~l~g~~~~~~~~~~~~~~~~l~~g~ 69 (243)
T 4gvo_A 20 PNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGK 69 (243)
T ss_dssp TTTEEECTTSCEESHHHHHHHHHHHTCTTEEEEEEECCGGGHHHHHHTTS
T ss_pred CCeEEECCCCcEEEhHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCC
Confidence 665 3567889999998888888537999999998888776666653
No 26
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=83.48 E-value=3.5 Score=22.70 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=35.0
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-+.|+.-+.+-.++++. |++++....+.+++..+=++|+
T Consensus 48 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 88 (259)
T 4dz1_A 48 DGKLQGIDLELFSSYCQSR-HCKLNITEYAWDGMLGAVASGQ 88 (259)
T ss_dssp TCCEESHHHHHHHHHHHHH-TCEEEEEECCHHHHHHHHHHTS
T ss_pred CCCEEEeHHHHHHHHHHHh-CCeEEEEEcCHHHHHHHHhCCC
Confidence 5678899999999999999 8999999999998887766663
No 27
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=83.41 E-value=2.7 Score=22.59 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=35.1
Q ss_pred CCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 9 DGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 9 ~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
..+-+.|+.-+.+-.++++. |++++...++..++..+=++|+
T Consensus 22 ~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 63 (237)
T 3kzg_A 22 NNSSLYGFDIDLMQEICRRL-HATCTFEAYIFDDLFPALKNRE 63 (237)
T ss_dssp TTSCCBSHHHHHHHHHHHHT-TCEEEEEEECGGGHHHHHHTTS
T ss_pred CCCCEeeehHHHHHHHHHHh-CCceEEEEcCHHHHHHHHhCCC
Confidence 45678899999999999999 8999999998888877666653
No 28
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=82.65 E-value=2.3 Score=22.85 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=34.8
Q ss_pred CCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 9 DGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 9 ~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
..+-+.|+.-+.+-.++++. |++++...++..++..+=++|+
T Consensus 29 ~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 70 (242)
T 3del_B 29 KRGEVVGFDIDLAREISNKL-GKTLDVREFSFDALILNLKQHR 70 (242)
T ss_dssp TTSCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTTS
T ss_pred CCCCEEEeeHHHHHHHHHHc-CCceEEEEcCHHHHHHHHhCCC
Confidence 34667899999999999999 8999999998888877666653
No 29
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=82.38 E-value=2.9 Score=22.70 Aligned_cols=40 Identities=8% Similarity=-0.045 Sum_probs=33.0
Q ss_pred CCCcccHHHHHHHHHhhhCCCCe-EEEEecCHHHHhchhhhC
Q psy10038 10 GLILPGITRMSILELSHQWNDYK-VTERKITMPDIVQLSREK 50 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~-v~e~~i~~~~l~~ade~~ 50 (51)
.+-+.|+.-+.+-+++++. |++ ++....+...+..+=++|
T Consensus 31 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~~l~~g 71 (257)
T 2q88_A 31 DGKVSGAAPDVAREIFKRL-GVADVVASISEYGAMIPGLQAG 71 (257)
T ss_dssp TCCEESHHHHHHHHHHHHT-TCCEEEEEECCGGGHHHHHHTT
T ss_pred CCCcccccHHHHHHHHHHc-CCCeeeEEeCCHHHHHHHHHCC
Confidence 4668899999999999999 898 998888877777665555
No 30
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=81.71 E-value=2.1 Score=23.14 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-+.|+.-+.+-.++++. |++++...++...+..+=++|+
T Consensus 24 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 64 (245)
T 3k4u_A 24 KGNVIGFDVDLAREMAKAM-GVKLKLVPTSWDGLIPGLVTEK 64 (245)
T ss_dssp TTEEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTTS
T ss_pred CCCCccchHHHHHHHHHHh-CCeEEEEEccHHHHHHHHhCCC
Confidence 4668899999999999999 8999999998888877666553
No 31
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=80.20 E-value=2.9 Score=22.39 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=34.8
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-+.|+.-+.+-.++++. |++++...++..++..+=++|+
T Consensus 34 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 74 (239)
T 3kbr_A 34 EGGYAGFDVDMAQRLAESL-GAKLVVVPTSWPNLMRDFADDR 74 (239)
T ss_dssp TSCEESHHHHHHHHHHHHT-TCEEEEEECCTTTHHHHHHTTC
T ss_pred CCCEEeehHHHHHHHHHHH-CCceEEEEeCHHHHHHHHHCCC
Confidence 5678899999999999999 8999999998888777666653
No 32
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=79.98 E-value=2.6 Score=22.85 Aligned_cols=41 Identities=15% Similarity=-0.058 Sum_probs=34.8
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-+.|+.-+.+-.++++. |++++....+...+..+=++|+
T Consensus 24 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 64 (232)
T 3i6v_A 24 AGEVDGFERELGDELCKRA-GLTCEWVKNDWDSIIPNLVSGN 64 (232)
T ss_dssp TSCEESHHHHHHHHHHHHH-TCCEEEEECCGGGHHHHHHTTS
T ss_pred CCCEeeehHHHHHHHHHHc-CCceEEEECCHHHHHHHHHCCC
Confidence 5678999999999999999 8999999998888877666553
No 33
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=79.82 E-value=1.6 Score=24.00 Aligned_cols=39 Identities=5% Similarity=0.038 Sum_probs=32.7
Q ss_pred CCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 11 LILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 11 ~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
|-+.|+.-+.+-.++++. |++++...++.+.+..+-++|
T Consensus 35 g~~~G~~vdl~~~ia~~l-g~~~~~~~~~~~~~~~~l~~g 73 (243)
T 4h5g_A 35 NQVVGADIDMAQAIADEL-GVKLEILSMSFDNVLTSLQTG 73 (243)
T ss_dssp EEEESHHHHHHHHHHHHH-TSEEEEEECCGGGHHHHHHTT
T ss_pred CcEEEeHHHHHHHHHHHh-CCceEEecccHHHHHHHHHcC
Confidence 457899999999999999 899999999888777665554
No 34
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=79.02 E-value=4 Score=22.42 Aligned_cols=41 Identities=7% Similarity=-0.140 Sum_probs=34.9
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-+.|+.-+.+-.++++. |++++...++..++..+=++|+
T Consensus 40 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 80 (268)
T 3hv1_A 40 DGSYIGFDIDLANAVFKLY-GIDVEWQAIDWDMKETELKNGT 80 (268)
T ss_dssp TSCEECHHHHHHHHHHHTT-TCEEEEEECCGGGHHHHHHHTS
T ss_pred CCCEEEehHHHHHHHHHHh-CCcEEEEECCHHHHHHHHHCCC
Confidence 6678899999999999999 8999999998888877666653
No 35
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=78.86 E-value=6.3 Score=21.76 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=34.6
Q ss_pred CCCCcccHHHHHHHHHhhhCCCCeEEEEec-CHHHHhchhhhCC
Q psy10038 9 DGLILPGITRMSILELSHQWNDYKVTERKI-TMPDIVQLSREKR 51 (51)
Q Consensus 9 ~~~~L~GitR~~ll~~~~~~~g~~v~e~~i-~~~~l~~ade~~~ 51 (51)
..+-+.|+.-+.+-.++++. |++++...+ +..++..+=++|+
T Consensus 50 ~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~~l~~G~ 92 (267)
T 3mpk_A 50 TDEQFGGISAAVLQLLQLRT-GLDFEIIGVDTVEELIAKLRSGE 92 (267)
T ss_dssp TTCCCBSHHHHHHHHHHHHH-CCEEEEEEESSHHHHHHHHHHTS
T ss_pred CCCcEeeeHHHHHHHHHHHH-CCeEEEEecCCHHHHHHHHHCCC
Confidence 35778999999999999999 899999976 5788877766664
No 36
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=77.24 E-value=5.1 Score=21.14 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEec-CHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKI-TMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i-~~~~l~~ade~~~ 51 (51)
.+-+.|+.-+.+-.++++. |++++.... +..++..+=++|+
T Consensus 24 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~~l~~g~ 65 (233)
T 1ii5_A 24 NAAFTGISLDVWRAVAESQ-KWNSEYVRQNSISAGITAVAEGE 65 (233)
T ss_dssp --CEESHHHHHHHHHHHHH-TCCEEEEECSCHHHHHHHHHTTS
T ss_pred CCCEEEEeHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHCCC
Confidence 4567899999998999998 899999999 8888887766663
No 37
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=77.08 E-value=4 Score=21.78 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=33.9
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-+.|+.-+.+-.++++. |++++....+.+++..+=++|+
T Consensus 23 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 63 (239)
T 1lst_A 23 KGEFIGFDIDLGNEMCKRM-QVKCTWVASDFDALIPSLKAKK 63 (239)
T ss_dssp TCCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTTS
T ss_pred CCCEeeEHHHHHHHHHHHH-CCeEEEEeCCHHHHHHHHhCCC
Confidence 4568899999999999999 8999999988888777666553
No 38
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=76.99 E-value=4.3 Score=22.41 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-..|+..+.+-.++++. |++++....+..++..+=++|+
T Consensus 60 ~g~~~G~~~dl~~~i~~~~-g~~v~~~~~~~~~~~~~l~~G~ 100 (272)
T 2pvu_A 60 KGKIVGFDVDLLDAVMKAA-GLDYELKNIGWDPLFASLQSKE 100 (272)
T ss_dssp TTEEESHHHHHHHHHHHHH-TCCEEEEECCHHHHHHHHHHTS
T ss_pred CCeEEEEHHHHHHHHHHHh-CCceEEEECCHHHHHHHHhCCC
Confidence 4567799999998999998 8999999999888877766653
No 39
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=76.09 E-value=3.8 Score=22.73 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=33.0
Q ss_pred CCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 11 LILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 11 ~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
+-+.|+.-+.+-.++++. |++++...++..++..+=++|
T Consensus 44 g~~~G~~~dl~~~i~~~~-g~~v~~~~~~~~~~~~~l~~G 82 (271)
T 2iee_A 44 DKLTGYEVEVVREAAKRL-GLKVEFKEMGIDGMLTAVNSG 82 (271)
T ss_dssp CEEECHHHHHHHHHHHHT-TCEEEEEECCSTTHHHHHHHT
T ss_pred CCceeeHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHHCC
Confidence 567899999999999999 899999998887777666555
No 40
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=75.07 E-value=2.6 Score=24.40 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=25.7
Q ss_pred HHHHHhhhCCCC------eEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDY------KVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~------~v~e~~i~~~~l~~ade~~ 50 (51)
.+++.+++. |+ ++.-...+++|+.+|.+.|
T Consensus 97 evi~~~~~~-~v~~~~~~~~~PG~~TptE~~~A~~~G 132 (217)
T 3lab_A 97 ELIEKAKQV-KLDGQWQGVFLPGVATASEVMIAAQAG 132 (217)
T ss_dssp HHHHHHHHH-HHHCSCCCEEEEEECSHHHHHHHHHTT
T ss_pred HHHHHHHHc-CCCccCCCeEeCCCCCHHHHHHHHHcC
Confidence 566777777 78 9999999999999998887
No 41
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=71.89 E-value=8.8 Score=20.05 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=30.6
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEec-CHHHHhchhhhC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKI-TMPDIVQLSREK 50 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i-~~~~l~~ade~~ 50 (51)
.+-..|+.-+.+-.++++. |++++.... +..++..+=++|
T Consensus 20 ~g~~~G~~~dl~~~~~~~~-g~~~~~~~~~~~~~~~~~l~~g 60 (228)
T 2pyy_A 20 KGELSGFSIDLWRSIATQI-GIESKLIEYSSVPELISAIKDN 60 (228)
T ss_dssp ---CBSHHHHHHHHHHHHH-TCCEEEEECSSHHHHHHHHHTT
T ss_pred CCceEEEeHHHHHHHHHHh-CCcEEEEEcCCHHHHHHHHHCC
Confidence 4567899999999999999 899999999 677776655555
No 42
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=71.45 E-value=6.3 Score=21.31 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-+.|+..+.+-.++++. |++++....+..++..+=++|+
T Consensus 50 ~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~ 90 (268)
T 3qax_A 50 QGEVVGFDIDLAKAISEKL-GKQLEVREFAFDALILNLKKHR 90 (268)
T ss_dssp TSCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHHTS
T ss_pred CCCEEEEEHHHHHHHHHHh-CCeEEEEecCHHHHHHHHhCCC
Confidence 4667899999999999999 8999999988888776666553
No 43
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=71.34 E-value=4.8 Score=23.38 Aligned_cols=31 Identities=0% Similarity=-0.098 Sum_probs=26.5
Q ss_pred HHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 19 MSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
..+++.+++. |+++.-...++.|+.+|.+.|
T Consensus 117 ~~vi~~~~~~-gi~~ipGv~TptEi~~A~~~G 147 (232)
T 4e38_A 117 PNTVRACQEI-GIDIVPGVNNPSTVEAALEMG 147 (232)
T ss_dssp HHHHHHHHHH-TCEEECEECSHHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCCEEcCCCCHHHHHHHHHcC
Confidence 3567778888 899988999999999998877
No 44
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=67.64 E-value=5.7 Score=20.78 Aligned_cols=40 Identities=8% Similarity=0.104 Sum_probs=32.7
Q ss_pred CCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 11 LILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 11 ~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
+-+.|+.-+.+-.++++. |++++....+..++..+=++|+
T Consensus 22 g~~~G~~~dl~~~~~~~~-g~~~~~~~~~~~~~~~~l~~g~ 61 (226)
T 1wdn_A 22 DLYVGFDVDLWAAIAKEL-KLDYELKPMDFSGIIPALQTKN 61 (226)
T ss_dssp TEEESHHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHTTS
T ss_pred CcEEEeeHHHHHHHHHHh-CCEEEEEECCHHHHHHHHhCCC
Confidence 557799999999999998 8999998888888776665553
No 45
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=66.79 E-value=12 Score=20.14 Aligned_cols=40 Identities=3% Similarity=0.056 Sum_probs=33.4
Q ss_pred CCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 11 LILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 11 ~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
+-+.|+.-+.+-.++++. |++++....+..++.++=++|+
T Consensus 62 g~~~G~~~dl~~~~~~~~-g~~~~~~~~~~~~~~~~l~~g~ 101 (269)
T 4i62_A 62 NQIVGSDIELAKAIATEL-GVELELSPMSFDNVLASVQSGK 101 (269)
T ss_dssp EEEESHHHHHHHHHHHHH-TCEEEEEECCHHHHHHHHHTTS
T ss_pred CcEeeecHHHHHHHHHHH-CCceEEEEcCHHHHHHHHhCCC
Confidence 456799999888899998 8999999999988887766663
No 46
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=66.67 E-value=0.028 Score=22.50 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=13.7
Q ss_pred CCCCCcccHHHHHHHHHh
Q psy10038 8 LDGLILPGITRMSILELS 25 (51)
Q Consensus 8 l~~~~L~GitR~~ll~~~ 25 (51)
...++|.|.||+-++.++
T Consensus 7 a~~CClsGCt~QDLL~lC 24 (26)
T 2h8b_A 7 ARYCCLSGCTQQDLLTLC 24 (26)
T ss_dssp HHHHHHTCBCHHHHHTTC
T ss_pred hHHHHhcCCcHHHHHhhC
Confidence 345689999999888654
No 47
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=65.74 E-value=5.2 Score=21.87 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=31.4
Q ss_pred CCcccHHHHHHHHHhhhCCCCeEEEEec-------------CHHHHhchhhhC
Q psy10038 11 LILPGITRMSILELSHQWNDYKVTERKI-------------TMPDIVQLSREK 50 (51)
Q Consensus 11 ~~L~GitR~~ll~~~~~~~g~~v~e~~i-------------~~~~l~~ade~~ 50 (51)
+-+.|+.-+.+-.++++. |++++...+ +.+.+..+=++|
T Consensus 30 g~~~G~~~dl~~~ia~~l-g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g 81 (263)
T 1mqi_A 30 ERYEGYCVDLAAEIAKHC-GFKYKLTIVGDGKYGARDADTKIWNGMVGELVYG 81 (263)
T ss_dssp GGEESHHHHHHHHHHHHH-TCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTT
T ss_pred CceeeeHHHHHHHHHHHc-CceEEEEEccccccCccCCCCCCcHHHHHHHHcC
Confidence 567899999999999999 899998888 666666555554
No 48
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=65.36 E-value=9.5 Score=21.35 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=32.9
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.+-..|+..+.+-.++++. |++++...++..++..+=++|+
T Consensus 76 ~g~~~G~~~dl~~~i~~~~-G~~v~~~~~~~~~~~~~l~~G~ 116 (283)
T 2yln_A 76 DGKLTGYDVEVTRAVAEKL-GVKVEFKETQWDSMMAGLKAGR 116 (283)
T ss_dssp TSCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHHTS
T ss_pred CCCEeeehHHHHHHHHHHc-CCceEEEECCHHHHHHHHHCCC
Confidence 4567899998888888888 8999999988877777666553
No 49
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=61.81 E-value=12 Score=17.73 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=25.4
Q ss_pred CCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 11 LILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 11 ~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+.+.|-.|+.+-++|.+. |++. |+++.+.+|.+
T Consensus 18 ~FVR~kvrr~tE~~Are~-G~~~----IT~ev~~~AK~ 50 (62)
T 2l09_A 18 FFARSQAKARIEQLARQA-EQDI----VTPELVEQARL 50 (62)
T ss_dssp GGGHHHHHHHHHHHHHHT-TCSE----ECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCe----EcHHHHHHHHH
Confidence 456778888888999998 6654 78888887765
No 50
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=55.74 E-value=12 Score=19.56 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=24.5
Q ss_pred CCcccHHHH-HHHHHhhhCCCCeEEE---------EecCHHHHhchh
Q psy10038 11 LILPGITRM-SILELSHQWNDYKVTE---------RKITMPDIVQLS 47 (51)
Q Consensus 11 ~~L~GitR~-~ll~~~~~~~g~~v~e---------~~i~~~~l~~ad 47 (51)
|+-...|-. .|.+.++++ |+++.. ..++.+++.+||
T Consensus 17 GiAHTyMAAeaL~~aA~~~-G~~ikVEtqGs~G~~n~Lt~~~I~~Ad 62 (111)
T 2kyr_A 17 GLAHTFMAAQALEEAAVEA-GYEVKIETQGADGIQNRLTAQDIAEAT 62 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHT-SSEEEEEEEETTEEESCCCHHHHHHCS
T ss_pred cHHHHHHHHHHHHHHHHHC-CCeEEEEecCCCCcCCCCCHHHHHhCC
Confidence 344444433 555678888 898865 478888998886
No 51
>3iez_A RAS GTPase-activating-like protein iqgap2; structural genomics consortium, SGC, alternative splicing, calmodulin-binding, phosphoprotein; 1.50A {Homo sapiens} PDB: 4eza_A
Probab=53.84 E-value=9.9 Score=19.94 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=18.6
Q ss_pred CCeEEEEecCHHHHhchhhhC
Q psy10038 30 DYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 30 g~~v~e~~i~~~~l~~ade~~ 50 (51)
|+++....++++||.+++-+|
T Consensus 70 gi~~~~~~l~ldDLLq~Qye~ 90 (114)
T 3iez_A 70 GVEMEKVQLNIQDLLQMQYEG 90 (114)
T ss_dssp TEEEEEEEEEHHHHHHHHHTT
T ss_pred CcceeEEEeeHHHHHHHHHCC
Confidence 688889999999999998776
No 52
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=50.55 E-value=12 Score=18.36 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=23.7
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHh
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIV 44 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~ 44 (51)
|-+-..|++.+++. |++|.+-+--...|.
T Consensus 26 ~~~A~~I~~~A~e~-~VPi~e~~~LAr~L~ 54 (83)
T 3bzy_B 26 DAKALQIIKLAELY-DIPVIEDIPLARSLD 54 (83)
T ss_dssp THHHHHHHHHHHHT-TCCEEECHHHHHHHH
T ss_pred cHHHHHHHHHHHHc-CCCEEeCHHHHHHHH
Confidence 67788999999999 899999776655555
No 53
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=48.93 E-value=15 Score=18.80 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHhhhCCCCeEEEEecCHHHHhc
Q psy10038 14 PGITRMSILELSHQWNDYKVTERKITMPDIVQ 45 (51)
Q Consensus 14 ~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ 45 (51)
.|++-..+.+.+++. |+.......+.++|.+
T Consensus 44 ~g~s~~~l~~aa~~~-Gl~a~~~~~~~~~L~~ 74 (142)
T 3zua_A 44 TGLGLTSWLLAAKSL-ELKVKQVKKTIDRLNF 74 (142)
T ss_dssp SCCCHHHHHHHHHTT-TEEEEEEECCHHHHTT
T ss_pred CCcCHHHHHHHHHHC-CCeeEEeecCHHHHhc
Confidence 467777888999999 8999999999988864
No 54
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.98 E-value=25 Score=17.39 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=17.8
Q ss_pred HHHHHhhhCCCCeEEEEecCHH
Q psy10038 20 SILELSHQWNDYKVTERKITMP 41 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~ 41 (51)
.+.+++.+. |+++++..|..+
T Consensus 29 ~ak~~L~~~-gi~y~~vdI~~~ 49 (111)
T 2ct6_A 29 DVVRFLEAN-KIEFEEVDITMS 49 (111)
T ss_dssp HHHHHHHHT-TCCEEEEETTTC
T ss_pred HHHHHHHHc-CCCEEEEECCCC
Confidence 678888888 899999999754
No 55
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=45.53 E-value=21 Score=16.85 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhh
Q psy10038 13 LPGITRMSILELSHQWNDYKVTERKITMPDIVQLSR 48 (51)
Q Consensus 13 L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade 48 (51)
+.|-.|+.+-++|++. |++. |+++.+.+|.+
T Consensus 21 VR~kvrr~tE~~Are~-G~~~----IT~ev~~~AK~ 51 (63)
T 2kru_A 21 VRKKVRKNTDNYAREI-GEPV----VTADVFRKAKE 51 (63)
T ss_dssp HHHHHHHHHHHHHHHH-TCSE----ECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCe----EcHHHHHHHHH
Confidence 4455666677888888 6654 78888877765
No 56
>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1qpm_A
Probab=45.33 E-value=1.2 Score=21.40 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=16.7
Q ss_pred Cccc--HHHHHHHHHhhhCCCCeEEEE
Q psy10038 12 ILPG--ITRMSILELSHQWNDYKVTER 36 (51)
Q Consensus 12 ~L~G--itR~~ll~~~~~~~g~~v~e~ 36 (51)
.|+| .+++.|...++.. |+....+
T Consensus 12 ~l~glP~s~~gi~~~A~re-~W~~R~r 37 (69)
T 1g4d_A 12 AADGMPGSVAGVHYRANVQ-GWTKRKK 37 (69)
T ss_dssp TSTTSCSSHHHHHHHHHHH-TCCEEEC
T ss_pred cCCCCCCCHHHHHHHHHHC-CCCeeec
Confidence 4555 6677888888887 7876553
No 57
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=44.46 E-value=23 Score=18.19 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=24.9
Q ss_pred CCcccHHHH-HHHHHhhhCCCCeEEE---------EecCHHHHhchh
Q psy10038 11 LILPGITRM-SILELSHQWNDYKVTE---------RKITMPDIVQLS 47 (51)
Q Consensus 11 ~~L~GitR~-~ll~~~~~~~g~~v~e---------~~i~~~~l~~ad 47 (51)
|+-...|-. .|-+.++++ |+++.. ..++.+++.+||
T Consensus 14 GiAhTymAaeaL~~aA~~~-G~~ikVEtqGs~G~~n~Lt~~~I~~Ad 59 (106)
T 2r48_A 14 GIAHTYMAAENLQKAADRL-GVSIKVETQGGIGVENKLTEEEIREAD 59 (106)
T ss_dssp CSHHHHHHHHHHHHHHHHH-TCEEEEEEEETTEEESCCCHHHHHHCS
T ss_pred cHHHHHHHHHHHHHHHHHC-CCeEEEEecCCCCccCCCCHHHHHhCC
Confidence 455555655 444567788 888765 468888988876
No 58
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=43.64 E-value=42 Score=19.81 Aligned_cols=38 Identities=0% Similarity=-0.113 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 12 ILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 12 ~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.|+.-.-+.+++.+++. |+.+-...-+.+|+..|.+.|
T Consensus 152 ~L~~~~l~~l~~~a~~l-Gl~~lvevh~~eEl~~A~~~g 189 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFAL-GMDALIEVHDEAEMERALKLS 189 (272)
T ss_dssp TSCHHHHHHHHHHHHHT-TCEEEEEECSHHHHHHHTTSC
T ss_pred ccCHHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHhcC
Confidence 56666677888899999 899888888999998877655
No 59
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=42.95 E-value=23 Score=18.18 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=24.4
Q ss_pred CCCcccHHHH-HHHHHhhhCCCCeEEE---------EecCHHHHhchh
Q psy10038 10 GLILPGITRM-SILELSHQWNDYKVTE---------RKITMPDIVQLS 47 (51)
Q Consensus 10 ~~~L~GitR~-~ll~~~~~~~g~~v~e---------~~i~~~~l~~ad 47 (51)
.|+-...|-. .|-+.++++ |+++.. ..++.+++.+||
T Consensus 13 tGiAhTymAaeaL~~aA~~~-G~~ikVEtqGs~G~~n~Lt~~~I~~Ad 59 (106)
T 2r4q_A 13 TGIAHTFMAADALKEKAKEL-GVEIKVETNGSSGIKHKLTAQEIEDAP 59 (106)
T ss_dssp CC--CHHHHHHHHHHHHHHH-TCCEEEEEEETTEEESCCCHHHHHHCS
T ss_pred CcHHHHHHHHHHHHHHHHHC-CCeEEEEecCCCCccCCCCHHHHHhCC
Confidence 3566666655 444567788 888755 468888988876
No 60
>3isu_A RAS GTPase-activating-like protein iqgap3; structural genomics, structural genomics consortium (SGC), RGC domain, calmodulin-binding; 1.88A {Homo sapiens}
Probab=42.64 E-value=6.9 Score=20.82 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.2
Q ss_pred CCeEEEEecCHHHHhchhhhC
Q psy10038 30 DYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 30 g~~v~e~~i~~~~l~~ade~~ 50 (51)
|+++....++++||.+++-+|
T Consensus 73 gi~~~~~~L~ldDLLq~Qye~ 93 (121)
T 3isu_A 73 GVDMERFQLHYQDLLQLQYEG 93 (121)
T ss_dssp TEECCCEEEEHHHHHHHHHTT
T ss_pred CceeeEEEeeHHHHHHHHHcC
Confidence 677888899999999998776
No 61
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=41.56 E-value=14 Score=18.70 Aligned_cols=29 Identities=0% Similarity=-0.007 Sum_probs=23.4
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHh
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIV 44 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~ 44 (51)
|-+-..|++.+++. |++|.+-+--...|+
T Consensus 26 ~~~A~~I~e~A~e~-gVPi~e~~~LAr~Ly 54 (93)
T 2vt1_B 26 NQCALAVRKYANEV-GIPTVRDVKLARKLY 54 (93)
T ss_dssp HHHHHHHHHHHHHT-TCCEEECHHHHHHHH
T ss_pred cHHHHHHHHHHHHc-CCCEEECHHHHHHHH
Confidence 66778999999999 899998766555555
No 62
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=39.63 E-value=26 Score=18.80 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=23.4
Q ss_pred CCcccHHHHHHHHHhhhCCCCeEEEEec
Q psy10038 11 LILPGITRMSILELSHQWNDYKVTERKI 38 (51)
Q Consensus 11 ~~L~GitR~~ll~~~~~~~g~~v~e~~i 38 (51)
+.+.|+.-+.+-.+++.. |++++...+
T Consensus 27 g~~~G~~~dl~~~i~~~l-g~~~~~~~~ 53 (265)
T 2v3u_A 27 KKYQGFSIDVLDALSNYL-GFNYEIYVA 53 (265)
T ss_dssp CEEESHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred ceEeEEEHHHHHHHHHHc-CCcEEEEEc
Confidence 567899999999999999 899988753
No 63
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=38.99 E-value=10 Score=17.61 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhCCCCeEEEEecCHHHHhch
Q psy10038 17 TRMSILELSHQWNDYKVTERKITMPDIVQL 46 (51)
Q Consensus 17 tR~~ll~~~~~~~g~~v~e~~i~~~~l~~a 46 (51)
.-..|-++++++ |++|..+=--+.++.+|
T Consensus 14 ~~~aIR~WAr~n-G~~VsdRGRIp~~V~eA 42 (55)
T 2kng_A 14 QSAAIREWARRN-GHNVSTRGRIPADVIDA 42 (55)
T ss_dssp HHHHHHHHHHHT-TCCCCSSSCCCHHHHHH
T ss_pred ChHHHHHHHHHc-CCcCCCCCCCCHHHHHH
Confidence 345788999998 89998865555555443
No 64
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=38.28 E-value=34 Score=16.09 Aligned_cols=22 Identities=5% Similarity=-0.050 Sum_probs=17.7
Q ss_pred HHHHHHhhhCCCCeEEEEecCHH
Q psy10038 19 MSILELSHQWNDYKVTERKITMP 41 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~ 41 (51)
+.+.+++.+. |+++++..|..+
T Consensus 22 ~~ak~~L~~~-~i~~~~~di~~~ 43 (93)
T 1t1v_A 22 SEVTRILDGK-RIQYQLVDISQD 43 (93)
T ss_dssp HHHHHHHHHT-TCCCEEEETTSC
T ss_pred HHHHHHHHHC-CCceEEEECCCC
Confidence 5677888888 899999988754
No 65
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=37.96 E-value=64 Score=20.48 Aligned_cols=39 Identities=8% Similarity=-0.010 Sum_probs=32.7
Q ss_pred CCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 11 LILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 11 ~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
..|+.-..+.+++.++++ |+.+-.+.=+.+|+..|-+.|
T Consensus 139 a~l~~~~l~~l~~~a~~l-gm~~LvEvh~~eE~~~A~~lg 177 (452)
T 1pii_A 139 SVLDDDQYRQLAAVAHSL-EMGVLTEVSNEEEQERAIALG 177 (452)
T ss_dssp TTCCHHHHHHHHHHHHHT-TCEEEEEECSHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHCC
Confidence 356666777888999999 899999999999999887765
No 66
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=37.94 E-value=27 Score=18.86 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=23.9
Q ss_pred CCcccHHHHHHHHHhhhCCCCeEEEEec
Q psy10038 11 LILPGITRMSILELSHQWNDYKVTERKI 38 (51)
Q Consensus 11 ~~L~GitR~~ll~~~~~~~g~~v~e~~i 38 (51)
+-+.|+.-+.+-.++++. |++++...+
T Consensus 30 g~~~G~~vdl~~~ia~~l-g~~~~~~~~ 56 (259)
T 3g3k_A 30 DRFEGYCIDLLRELSTHL-GFTYEIRLV 56 (259)
T ss_dssp GGEESHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred ceeeeEHHHHHHHHHHHc-CCeEEEEEC
Confidence 667899999999999999 899988865
No 67
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=37.76 E-value=18 Score=18.38 Aligned_cols=29 Identities=3% Similarity=-0.018 Sum_probs=23.4
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHh
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIV 44 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~ 44 (51)
|-+-..|++++++. |++|.+-+--...|+
T Consensus 26 ~~~A~~I~e~A~e~-gVPi~e~~~LAr~Ly 54 (98)
T 3c01_E 26 NQRALAVRAYAEKV-GVPVIVDIKLARSLF 54 (98)
T ss_dssp HHHHHHHHHHHHHH-TCCEEECHHHHHHHH
T ss_pred cHHHHHHHHHHHHc-CCCeecCHHHHHHHH
Confidence 66778999999999 899998766555555
No 68
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=37.19 E-value=17 Score=18.42 Aligned_cols=29 Identities=3% Similarity=0.135 Sum_probs=23.5
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHh
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIV 44 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~ 44 (51)
|-+-..|++.+++. |++|.+-+--...|+
T Consensus 41 ~~~A~~I~~~A~e~-gVPi~e~~~LAr~L~ 69 (97)
T 3t7y_A 41 NLRAKRIIAEAEKY-GVPIMRNVPLAHQLL 69 (97)
T ss_dssp HHHHHHHHHHHHHH-TCCEEECHHHHHHHH
T ss_pred cHHHHHHHHHHHHc-CCeEEECHHHHHHHH
Confidence 66778999999999 899998766555555
No 69
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=33.34 E-value=20 Score=18.41 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=24.2
Q ss_pred CCcccHH-HHHHHHHhhhCCCCeEEE---------EecCHHHHhchh
Q psy10038 11 LILPGIT-RMSILELSHQWNDYKVTE---------RKITMPDIVQLS 47 (51)
Q Consensus 11 ~~L~Git-R~~ll~~~~~~~g~~v~e---------~~i~~~~l~~ad 47 (51)
|+=...| .+.|.+.++++ |+++.. ..++.+++.+||
T Consensus 14 GiAhTymAAeaLekaA~~~-G~~ikVEtqgs~g~~n~Lt~~~I~~AD 59 (106)
T 2m1z_A 14 GVAHTYMAAQALKKGAKKM-GNLIKVETQGATGIENELTEKDVNIGE 59 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCEEEEEEEETTEESSCCCHHHHHHCS
T ss_pred cHHHHHHHHHHHHHHHHHC-CCEEEEEEecCccccCCCCHHHHhhCC
Confidence 4445555 45666788888 888764 356678887776
No 70
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=33.11 E-value=44 Score=15.89 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecCHHHHhchh
Q psy10038 16 ITRMSILELSHQWNDYKVTERKITMPDIVQLS 47 (51)
Q Consensus 16 itR~~ll~~~~~~~g~~v~e~~i~~~~l~~ad 47 (51)
-+...+..++... ++++..-. +..+|-.|-
T Consensus 40 ~~~~~i~~lc~~~-~Ip~~~v~-sk~eLG~a~ 69 (82)
T 3v7e_A 40 ILTSSVVSLAEDQ-GISVSMVE-SMKKLGKAC 69 (82)
T ss_dssp HHHHHHHHHHHHH-TCCEEEES-CHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCEEEEC-CHHHHHHHh
Confidence 4677888899998 89999877 888886653
No 71
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=32.72 E-value=68 Score=17.95 Aligned_cols=31 Identities=6% Similarity=-0.016 Sum_probs=25.3
Q ss_pred HHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 19 MSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
..+.+.++.. |.++.-...++.++.+|.+.|
T Consensus 99 ~~v~~~~~~~-g~~~i~G~~t~~e~~~A~~~G 129 (214)
T 1wbh_A 99 EPLLKAATEG-TIPLIPGISTVSELMLGMDYG 129 (214)
T ss_dssp HHHHHHHHHS-SSCEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHh-CCCEEEecCCHHHHHHHHHCC
Confidence 3567777888 788887889999999998876
No 72
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=31.07 E-value=46 Score=18.49 Aligned_cols=41 Identities=15% Similarity=0.008 Sum_probs=29.3
Q ss_pred CCCcccHHHHHHHHHhhhC--CCCeEEEEecCHHHHhchhhhC
Q psy10038 10 GLILPGITRMSILELSHQW--NDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~--~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+-+.|+..+.+-.++++. .|++++....+..++..+=++|
T Consensus 74 ~g~~~G~~~dl~~~i~~~~~~~g~~v~~~~~~~~~~~~~l~~G 116 (291)
T 2yjp_A 74 NGKNQGFDVEIAKDLAKDLLGSPDKVEFVLTEAANRVEYVRSG 116 (291)
T ss_dssp TSCEESHHHHHHHHHHHHHHSCGGGEEEEECCGGGHHHHHHTT
T ss_pred CCCEeehHHHHHHHHHHHhccCCceEEEEEccHHHHHHHHhCC
Confidence 4567798888776666654 1588988888877776665555
No 73
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=31.06 E-value=27 Score=16.13 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=16.9
Q ss_pred CcccHHHHHHHHHhhhCCCCeEE
Q psy10038 12 ILPGITRMSILELSHQWNDYKVT 34 (51)
Q Consensus 12 ~L~GitR~~ll~~~~~~~g~~v~ 34 (51)
.+.--||+.|++.++++ |+...
T Consensus 35 ~vs~~t~~rV~~~a~~l-gY~pn 56 (67)
T 2l8n_A 35 KVSQATRNRVEKAAREV-GYLPQ 56 (67)
T ss_dssp CSCHHHHHHHHHHHHHH-CCCC-
T ss_pred CCCHHHHHHHHHHHHHh-CCCcc
Confidence 45667899999999999 78543
No 74
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=30.65 E-value=71 Score=17.57 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=29.5
Q ss_pred CCCcccHHHHHHHHHhhhC--CCCeEEEEecCHHHHhchhhhC
Q psy10038 10 GLILPGITRMSILELSHQW--NDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~--~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+-..|+..+.+-.++++. .|++++....+..++..+=++|
T Consensus 63 ~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~~~~~~~~~l~~G 105 (292)
T 1xt8_A 63 KGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSN 105 (292)
T ss_dssp TSCEESHHHHHHHHHHHHHHSCTTCEEEEECCGGGHHHHHHTT
T ss_pred CCCEeeEhHHHHHHHHHHhccCCceEEEEEcCHHHHHHHHhCC
Confidence 4677899988777777765 1588988888877666655554
No 75
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=30.41 E-value=57 Score=18.46 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=24.2
Q ss_pred HHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 19 MSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
..+++.+++. |.++.-...++.++.+|.+.|
T Consensus 100 ~~v~~~ar~~-g~~~i~Gv~t~~e~~~A~~~G 130 (224)
T 1vhc_A 100 PKIVKLCQDL-NFPITPGVNNPMAIEIALEMG 130 (224)
T ss_dssp HHHHHHHHHT-TCCEECEECSHHHHHHHHHTT
T ss_pred HHHHHHHHHh-CCCEEeccCCHHHHHHHHHCC
Confidence 3556777777 788777788999999988876
No 76
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=30.16 E-value=89 Score=18.53 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=30.3
Q ss_pred CcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 12 ILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 12 ~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
+|.--.-+.+.+++.++ |+++-.+.-+.+|+..|-+.|
T Consensus 136 ~L~~~~l~~l~~~A~~l-Gl~~LvEVh~~~El~rAl~~~ 173 (258)
T 4a29_A 136 ILTERELESLLEYARSY-GMEPLILINDENDLDIALRIG 173 (258)
T ss_dssp GSCHHHHHHHHHHHHHT-TCCCEEEESSHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHH-hHHHHHhcchHHHHHHHhcCC
Confidence 34545567888999999 899988889999998876654
No 77
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=30.15 E-value=73 Score=17.54 Aligned_cols=31 Identities=6% Similarity=-0.090 Sum_probs=22.6
Q ss_pred HHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 19 MSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
+.|.+.+++. |++|+.+.+....+.+.-..|
T Consensus 146 ~~iq~~l~~i-Gi~v~i~~~~~~~~~~~~~~~ 176 (258)
T 3lvu_A 146 EIYTRALERL-GIAAQIEKVDNAQYTARVAEL 176 (258)
T ss_dssp HHHHHHHHTT-TCCCEEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCeeEEEecCHHHHHHHhccC
Confidence 3455677788 899999999988876554433
No 78
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=30.07 E-value=9.2 Score=17.46 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=16.9
Q ss_pred CCcccHHHHHHHHHhhhCCCCeE
Q psy10038 11 LILPGITRMSILELSHQWNDYKV 33 (51)
Q Consensus 11 ~~L~GitR~~ll~~~~~~~g~~v 33 (51)
.+|.|-+|+.|+.-++.- ++.|
T Consensus 18 ~VLqgksR~vIirELqrT-nLdV 39 (53)
T 2qho_B 18 VVLQGKSRSVIIRELQRT-NLDV 39 (53)
T ss_dssp HHSTTCCHHHHHHHHHHT-TTCH
T ss_pred HHhcCCcHHHHHHHHHHh-CccH
Confidence 368899999999877766 5655
No 79
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=29.61 E-value=86 Score=18.21 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhh
Q psy10038 13 LPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49 (51)
Q Consensus 13 L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~ 49 (51)
|+--+-+.+++.++++ |+.+-...-+.+|+..|.+.
T Consensus 134 l~~~~l~~l~~~a~~l-Gl~~lvEv~~~eE~~~A~~l 169 (251)
T 1i4n_A 134 LTAEQIKEIYEAAEEL-GMDSLVEVHSREDLEKVFSV 169 (251)
T ss_dssp SCHHHHHHHHHHHHTT-TCEEEEEECSHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHhc
Confidence 4434566788899999 89999999999999888765
No 80
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=29.29 E-value=81 Score=17.80 Aligned_cols=32 Identities=9% Similarity=-0.050 Sum_probs=24.5
Q ss_pred HHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 18 RMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 18 R~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
-..+++.+++. |+.+--..-++++...|.+.|
T Consensus 118 l~~~i~~~~~~-g~~v~~~v~t~eea~~a~~~G 149 (229)
T 3q58_A 118 IDSLLTRIRLH-GLLAMADCSTVNEGISCHQKG 149 (229)
T ss_dssp HHHHHHHHHHT-TCEEEEECSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHC-CCEEEEecCCHHHHHHHHhCC
Confidence 44566777777 788888888888888887766
No 81
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=29.16 E-value=62 Score=17.44 Aligned_cols=27 Identities=15% Similarity=0.098 Sum_probs=19.0
Q ss_pred HHHHHHhhhCCCCeEEEEecCHHHHhchh
Q psy10038 19 MSILELSHQWNDYKVTERKITMPDIVQLS 47 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~~l~~ad 47 (51)
+++...+++. |.++.... .+++|.++|
T Consensus 16 ~si~~al~~~-G~~~~v~~-~~~~l~~~D 42 (211)
T 4gud_A 16 SSVKFAIERL-GYAVTISR-DPQVVLAAD 42 (211)
T ss_dssp HHHHHHHHHT-TCCEEEEC-CHHHHHHCS
T ss_pred HHHHHHHHHC-CCEEEEEC-CHHHHhCCC
Confidence 4566677888 78887643 677887765
No 82
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=29.13 E-value=69 Score=18.13 Aligned_cols=31 Identities=16% Similarity=-0.015 Sum_probs=24.9
Q ss_pred HHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 19 MSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
..+.+.++.. |.++.-...++.++.+|.+.|
T Consensus 109 ~~v~~~~~~~-g~~~i~G~~t~~e~~~A~~~G 139 (225)
T 1mxs_A 109 EDILEAGVDS-EIPLLPGISTPSEIMMGYALG 139 (225)
T ss_dssp HHHHHHHHHC-SSCEECEECSHHHHHHHHTTT
T ss_pred HHHHHHHHHh-CCCEEEeeCCHHHHHHHHHCC
Confidence 3567777887 788877789999999888776
No 83
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=28.85 E-value=76 Score=17.31 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=28.5
Q ss_pred CCCcccHHHHHHHHHhhh----CCC---CeEEEEecCHHHHhchhhhC
Q psy10038 10 GLILPGITRMSILELSHQ----WND---YKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~----~~g---~~v~e~~i~~~~l~~ade~~ 50 (51)
.+-+.|+..+.+-.+++. . | ++++....+..++..+=++|
T Consensus 36 ~g~~~G~~~dl~~~ia~~l~~~~-G~~~~~v~~~~~~~~~~~~~l~~g 82 (287)
T 2vha_A 36 QQKVVGYSQDYSNAIVEAVKKKL-NKPDLQVKLIPITSQNRIPLLQNG 82 (287)
T ss_dssp SSCEESHHHHHHHHHHHHHHHHT-TCTTCEEEEEECCTTTHHHHHHTT
T ss_pred CCCcccccHHHHHHHHHHHHHhc-CCCCceEEEEECCHHHHHHHHHCC
Confidence 466789988887777653 5 5 88988888776666555554
No 84
>1x0h_A P195, RAS GTPase-activating-like protein iqgap1; cell adhesion, beta-sandwich, protein-protein interaction, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.332.1.1
Probab=28.67 E-value=23 Score=18.34 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.6
Q ss_pred CCeEEEEecCHHHHhchhhhC
Q psy10038 30 DYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 30 g~~v~e~~i~~~~l~~ade~~ 50 (51)
|++.....+.++||.+++.+|
T Consensus 58 g~~~~~~~l~ldDLLe~Q~~~ 78 (112)
T 1x0h_A 58 GVQMETFMLHYQDLLQLQYEG 78 (112)
T ss_dssp CCCSCCEEECHHHHHHHHHHC
T ss_pred CccceEEEEeHHHHHHHhhCC
Confidence 677788899999999988766
No 85
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=27.95 E-value=81 Score=17.36 Aligned_cols=31 Identities=3% Similarity=-0.100 Sum_probs=22.6
Q ss_pred HHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 19 MSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 19 ~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
+.|.+.+++. |++|+.+.+....+.+.-..|
T Consensus 145 ~~iq~~l~~i-GI~v~i~~~~~~~~~~~~~~~ 175 (259)
T 3pam_A 145 LAFQSNLSRL-GIHAEIRTVDDSQYQNRLGMF 175 (259)
T ss_dssp HHHHHHHHTT-TCEEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCEEEEEecCHHHHHHHHhcC
Confidence 3455677788 899999999988876544333
No 86
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=27.83 E-value=34 Score=18.38 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.0
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHh
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIV 44 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~ 44 (51)
|-.-..|+++|++. |++|.+-+--...|+
T Consensus 80 g~~A~~I~e~A~e~-gVPi~e~~~LAr~Ly 108 (137)
T 3bzs_A 80 DAKALQIIKLAELY-DIPVIEDIPLARSLY 108 (137)
T ss_dssp THHHHHHHHHHHHH-TCCEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCCEEeCHHHHHHHH
Confidence 67788999999999 899999776666665
No 87
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=27.67 E-value=63 Score=16.03 Aligned_cols=32 Identities=6% Similarity=-0.172 Sum_probs=24.8
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHhchh
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIVQLS 47 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ad 47 (51)
--++..+..++... ++++.....+..+|-.|-
T Consensus 50 ~~~~~~i~~~c~~~-~ip~~~~~~s~~eLG~A~ 81 (105)
T 3u5e_c 50 VLRKSELEYYAMLS-KTKVYYFQGGNNELGTAV 81 (105)
T ss_dssp HHHHHHHHHHHHHH-TCEEEECSSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHc-CCCEEEeCCCHHHHHHHh
Confidence 34677888888888 799987778888886653
No 88
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=27.53 E-value=44 Score=16.66 Aligned_cols=35 Identities=3% Similarity=-0.046 Sum_probs=26.1
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhc
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERKITMPDIVQ 45 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ 45 (51)
.|.=-+++-+.+-+.+++. |++++....+..++..
T Consensus 12 ~G~sTS~l~~k~~~~~~~~-gi~~~i~a~~~~~~~~ 46 (106)
T 1e2b_A 12 AGMSTSLLVSKMRAQAEKY-EVPVIIEAFPETLAGE 46 (106)
T ss_dssp SSTTTHHHHHHHHHHHHHS-CCSEEEEEECSSSTTH
T ss_pred CchhHHHHHHHHHHHHHHC-CCCeEEEEecHHHHHh
Confidence 3444567777888999999 8998888877766543
No 89
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=27.48 E-value=24 Score=17.83 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=15.0
Q ss_pred cHHHH---HHHHHhhhCCCCeEEE
Q psy10038 15 GITRM---SILELSHQWNDYKVTE 35 (51)
Q Consensus 15 GitR~---~ll~~~~~~~g~~v~e 35 (51)
|++|+ .+++.+... |++...
T Consensus 91 g~sRK~ai~lLE~~Dr~-g~TrR~ 113 (121)
T 2pjp_A 91 GVGRKLAIQILEYFDRI-GFTRRR 113 (121)
T ss_dssp TSCHHHHHHHHHHHHHH-TSEEEE
T ss_pred CCcHHHHHHHHHHHhhc-CCeEee
Confidence 78899 677777777 787654
No 90
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=27.22 E-value=90 Score=17.63 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=24.2
Q ss_pred HHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 18 RMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 18 R~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
-..+++.+++. |+.+--..-++++...|.+.|
T Consensus 118 l~~~i~~~~~~-g~~v~~~v~t~eea~~a~~~G 149 (232)
T 3igs_A 118 VEALLARIHHH-HLLTMADCSSVDDGLACQRLG 149 (232)
T ss_dssp HHHHHHHHHHT-TCEEEEECCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHC-CCEEEEeCCCHHHHHHHHhCC
Confidence 34566777777 788888888888888887766
No 91
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=26.93 E-value=99 Score=18.02 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 14 PGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 14 ~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
+.-.-..+++.+++. |+.+-...-+.+++..|.+.|
T Consensus 147 ~~~~l~~l~~~a~~l-Gl~~lvev~t~ee~~~A~~~G 182 (272)
T 3qja_A 147 EQSVLVSMLDRTESL-GMTALVEVHTEQEADRALKAG 182 (272)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHCC
Confidence 334455677888888 899888888999998887765
No 92
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=26.67 E-value=25 Score=19.88 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=22.9
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEEEe
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTERK 37 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e~~ 37 (51)
.+-+.|+.-+.+-.+++++ |++++...
T Consensus 38 ~g~~~G~~vdl~~~ia~~l-g~~~~~~~ 64 (312)
T 1yae_A 38 NDRFEGYCIDLLRELSTIL-GFTYEIRL 64 (312)
T ss_dssp GGGEESHHHHHHHHHHHHH-CCEEEEEE
T ss_pred CceEEEEEHHHHHHHHHHc-CCeEEEEe
Confidence 3567899999999999999 89988874
No 93
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=26.62 E-value=36 Score=17.97 Aligned_cols=29 Identities=3% Similarity=0.026 Sum_probs=23.8
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHh
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIV 44 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~ 44 (51)
|-+-..|+++|++. |++|.+-+--...|+
T Consensus 70 ~~~A~~I~~~A~e~-~VPi~e~~~LAr~Ly 98 (123)
T 2jli_A 70 DAQVQTVRKIAEEE-GVPILQRIPLARALY 98 (123)
T ss_dssp THHHHHHHHHHHHH-TCCEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCCEEeCHHHHHHHH
Confidence 67788999999999 899999776655565
No 94
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=26.52 E-value=9.3 Score=19.39 Aligned_cols=30 Identities=20% Similarity=0.079 Sum_probs=24.6
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
+++.++-++ |-++..+.|+..++.++-|.|
T Consensus 18 SIL~~L~~~-~A~~~~KAI~K~~I~D~iE~~ 47 (101)
T 4asn_A 18 SILGWLFQN-EANAVFKAIKKSSIADELEYS 47 (101)
T ss_dssp HHHHHHHHT-TCCSGGGCEEHHHHHTTSCCC
T ss_pred HHHHHHHhc-CccceeeeecHhhHHHHHHHh
Confidence 678888888 788999999999988776654
No 95
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=32.39 E-value=14 Score=18.40 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=21.9
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHh
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIV 44 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~ 44 (51)
|-+-..|++.+++. |+++.+-+--...|.
T Consensus 26 ~~~A~~I~e~A~e~-~VPi~e~~~LAr~Ly 54 (87)
T 3b1s_B 26 GTIAQKIVEIAENY-SIPVVRKPELARALY 54 (87)
Confidence 45667888999998 899988766555555
No 96
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=26.17 E-value=20 Score=20.31 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=22.5
Q ss_pred CcccHHHHHHHHHhhhCCCCeEEEEec
Q psy10038 12 ILPGITRMSILELSHQWNDYKVTERKI 38 (51)
Q Consensus 12 ~L~GitR~~ll~~~~~~~g~~v~e~~i 38 (51)
.+.|+.-+.+-++++.. |++++...+
T Consensus 62 ~~~G~~vDll~~ia~~l-g~~~~~~~~ 87 (292)
T 1pb7_A 62 CCYGFCIDLLIKLARTM-NFTYEVHLV 87 (292)
T ss_dssp EEESHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred CcceeHHHHHHHHHHHc-CceEEEEEe
Confidence 36899999999999999 899988775
No 97
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=26.16 E-value=36 Score=18.43 Aligned_cols=29 Identities=3% Similarity=0.026 Sum_probs=23.9
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHh
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIV 44 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~ 44 (51)
|-.-..|+++|++. |++|.+-+--...|+
T Consensus 79 g~~A~~I~e~A~e~-gVPi~e~~~LAr~Ly 107 (144)
T 2jlj_A 79 DAQVQTVRKIAEEE-GVPILQRIPLARALY 107 (144)
T ss_dssp THHHHHHHHHHHHH-TCCEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCCEEeCHHHHHHHH
Confidence 67788999999999 899999776666665
No 98
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=25.80 E-value=97 Score=17.52 Aligned_cols=28 Identities=7% Similarity=0.060 Sum_probs=21.0
Q ss_pred HHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 23 ELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 23 ~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
.++++. |++|+....+...+.+|=++|+
T Consensus 23 ~~Le~~-G~~Ve~~~~~~~~~~~al~~G~ 50 (256)
T 3l6g_A 23 QAMKEH-GFDVKTTALDNAVAWQTVANGQ 50 (256)
T ss_dssp HHHHHT-TEEEEEEECCHHHHHHHHHTTS
T ss_pred HHHHHC-CCceEEEECChHHHHHHHHCCC
Confidence 456667 8999998888777777766664
No 99
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=25.71 E-value=79 Score=17.17 Aligned_cols=25 Identities=4% Similarity=0.129 Sum_probs=18.5
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchh
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLS 47 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ad 47 (51)
-|+++++++ |+++.. ++.++|.+.+
T Consensus 55 gL~e~A~~l-gvPl~~--~~~eeL~~v~ 79 (155)
T 3by5_A 55 GLAEAAKGL-SLSLEI--VAQERLEAVA 79 (155)
T ss_dssp HHHHHHHHT-TCCEEE--CCHHHHHHHH
T ss_pred HHHHHHHHh-CCCeEE--ECHHHHhhcc
Confidence 567888888 777766 7888887543
No 100
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=25.62 E-value=24 Score=17.04 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=14.6
Q ss_pred EEecCCCCCCcccHHHHHHHHHhh
Q psy10038 3 MITPTLDGLILPGITRMSILELSH 26 (51)
Q Consensus 3 ~~TP~l~~~~L~GitR~~ll~~~~ 26 (51)
++|+..=.-+-+|.||+.|..++-
T Consensus 4 ~l~~~~~~~i~~GmTk~qV~~lLG 27 (88)
T 2yh9_A 4 YLTANDVSKIRVGMTQQQVAYALG 27 (88)
T ss_dssp ------CTTCCTTCBHHHHHHHHC
T ss_pred cCCHHHHHhccCCCCHHHHHHHcC
Confidence 345444455788999999998874
No 101
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=25.59 E-value=38 Score=15.49 Aligned_cols=22 Identities=9% Similarity=0.213 Sum_probs=16.9
Q ss_pred CcccHHHHHHHHHhhhCCCCeEE
Q psy10038 12 ILPGITRMSILELSHQWNDYKVT 34 (51)
Q Consensus 12 ~L~GitR~~ll~~~~~~~g~~v~ 34 (51)
.+.--||+.|.+.+++. |+...
T Consensus 29 ~vs~et~~rI~~aa~~l-gY~pn 50 (65)
T 1uxc_A 29 RVSDKTVEKVMAVVREH-NYHPN 50 (65)
T ss_dssp TCTTHHHHHHHHHHHHH-TCCCC
T ss_pred CCCHHHHHHHHHHHHHh-CCCcc
Confidence 35667889999999998 77543
No 102
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=25.31 E-value=93 Score=17.17 Aligned_cols=30 Identities=7% Similarity=0.003 Sum_probs=23.2
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+.+.++.. |.++.-..-++.++.+|.+.|
T Consensus 95 ~v~~~~~~~-g~~~i~G~~t~~e~~~A~~~G 124 (207)
T 2yw3_A 95 EVAALAQAR-GVPYLPGVLTPTEVERALALG 124 (207)
T ss_dssp HHHHHHHHH-TCCEEEEECSHHHHHHHHHTT
T ss_pred HHHHHHHHh-CCCEEecCCCHHHHHHHHHCC
Confidence 555666667 788777778899999888776
No 103
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=25.28 E-value=67 Score=17.10 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=17.8
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchh
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLS 47 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ad 47 (51)
-++++++++ |+++.. ++.++|.+.+
T Consensus 59 gL~~~A~~l-g~pl~~--~~~eeL~~v~ 83 (145)
T 2w6k_A 59 GLRQLATLL-ERPVHF--LAPAVLHDYE 83 (145)
T ss_dssp HHHHHHHHH-TSCEEE--ECHHHHHTTG
T ss_pred HHHHHHHHh-CCCcEE--eCHHHHhhcc
Confidence 467888888 777765 7777776543
No 104
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=25.00 E-value=63 Score=15.13 Aligned_cols=21 Identities=10% Similarity=0.392 Sum_probs=15.7
Q ss_pred ccH--HHHHHHHHhhhCCCCeEEE
Q psy10038 14 PGI--TRMSILELSHQWNDYKVTE 35 (51)
Q Consensus 14 ~Gi--tR~~ll~~~~~~~g~~v~e 35 (51)
+|+ .|..+.+++.+. ++.+.+
T Consensus 49 ~g~~~Lk~~V~~~L~~~-~~~~~e 71 (82)
T 3fau_A 49 GGVARIKPAVIKYLISH-SFRFSE 71 (82)
T ss_dssp ----CHHHHHHHHHHHT-TCCEEE
T ss_pred CCcchHHHHHHHHHHhC-CCceee
Confidence 466 899999999998 788765
No 105
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative, riken structural genomics/proteomics initiative, RSGI; 2.07A {Geobacillus kaustophilus}
Probab=24.02 E-value=47 Score=20.20 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=19.2
Q ss_pred CEEEecCCCCCCcccHHHHHHHHH-hhhCCCCe
Q psy10038 1 MEMITPTLDGLILPGITRMSILEL-SHQWNDYK 32 (51)
Q Consensus 1 ~~~~TP~l~~~~L~GitR~~ll~~-~~~~~g~~ 32 (51)
+.+|.|+++..+ +++.=..+++. .++. |+.
T Consensus 276 Iav~SP~LD~~G-NSv~G~~~le~ls~~~-~l~ 306 (308)
T 2pby_A 276 IGVFGPALDDKG-NSLTGVKLLERLSKTY-SLS 306 (308)
T ss_dssp EEEECCCBCTTS-SBHHHHHHHHHHHHHH-TCC
T ss_pred EEEECCCCCCCC-CcHHHHHHHHHHHHHh-CCC
Confidence 357999998876 66665666654 4444 443
No 106
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=23.97 E-value=73 Score=18.94 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=24.0
Q ss_pred CcccHHHHHHHHHhhhCCCCeEEEEecCHHHH
Q psy10038 12 ILPGITRMSILELSHQWNDYKVTERKITMPDI 43 (51)
Q Consensus 12 ~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l 43 (51)
.+.+-+.+.+++.+.+. |+.+...-+...+.
T Consensus 123 l~~~~~~~~i~~~l~~~-GY~v~~~vl~a~~~ 153 (343)
T 1g55_A 123 FEVSSTRDLLIQTIENC-GFQYQEFLLSPTSL 153 (343)
T ss_dssp GGGSHHHHHHHHHHHHT-TEEEEEEEECGGGG
T ss_pred ccCHHHHHHHHHHHHHC-CCeeEEEEEEHHHC
Confidence 45567888899999998 89998877766554
No 107
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.85 E-value=51 Score=16.11 Aligned_cols=31 Identities=19% Similarity=0.017 Sum_probs=22.1
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHhch
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIVQL 46 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~a 46 (51)
-=++..+..++... ++++..-..+..+|-.|
T Consensus 43 ~~~~~~i~~~c~~~-~ip~~~~~~s~~eLG~a 73 (99)
T 3j21_Z 43 KEIKDDIYYYAKLS-DIPVYEFEGTSVELGTL 73 (99)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEECCCSCGGGGT
T ss_pred HHHHHHHHHHHHHc-CCCEEEeCCCHHHHHHH
Confidence 44567788888888 89987765666666544
No 108
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=23.71 E-value=79 Score=16.62 Aligned_cols=41 Identities=12% Similarity=-0.016 Sum_probs=29.2
Q ss_pred CCCcccHHHHHHHHHhhhC--CCCeEEEEecCHHHHhchhhhC
Q psy10038 10 GLILPGITRMSILELSHQW--NDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~--~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+-..|+..+.+-.++++. .|++++....+..++..+=++|
T Consensus 58 ~g~~~G~~~~l~~~~~~~~~~pg~~v~~~~~~~~~~~~~l~~g 100 (259)
T 2v25_A 58 TGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNG 100 (259)
T ss_dssp TTEEESHHHHHHHHHHHHHHSCTTSEEEEECCTTTHHHHHHTT
T ss_pred CCeEEEeeHHHHHHHHHHhcCCCcceEEEEcCHHHHHHHHhCC
Confidence 5667888888777777765 2588888888777776655555
No 109
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=23.68 E-value=52 Score=15.91 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=15.9
Q ss_pred HHHHHhhhCCCCeEEEEecCHH
Q psy10038 20 SILELSHQWNDYKVTERKITMP 41 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~ 41 (51)
.+.+++.+. |+++++..|.-+
T Consensus 19 ~aK~~L~~~-gi~y~~idi~~d 39 (92)
T 2lqo_A 19 RLKTALTAN-RIAYDEVDIEHN 39 (92)
T ss_dssp HHHHHHHHT-TCCCEEEETTTC
T ss_pred HHHHHHHhc-CCceEEEEcCCC
Confidence 345677888 899999988643
No 110
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=23.59 E-value=94 Score=16.60 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=20.2
Q ss_pred HHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 20 SILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 20 ~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
.+++.+++. |+++.-...++.++..|-+.|
T Consensus 95 ~~~~~~~~~-g~~vi~g~~t~~e~~~a~~~G 124 (205)
T 1wa3_A 95 EISQFCKEK-GVFYMPGVMTPTELVKAMKLG 124 (205)
T ss_dssp HHHHHHHHH-TCEEECEECSHHHHHHHHHTT
T ss_pred HHHHHHHHc-CCcEECCcCCHHHHHHHHHcC
Confidence 466777777 677777666777776665544
No 111
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=23.47 E-value=38 Score=18.80 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=16.9
Q ss_pred CCCCCcccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchhhhC
Q psy10038 8 LDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREK 50 (51)
Q Consensus 8 l~~~~L~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ade~~ 50 (51)
+...-|.|++| .|+-.|++. |++|+. ..+.|+.+.-.+|
T Consensus 120 l~a~~l~~a~k-~I~GTArSm-Gi~V~g--~~P~ev~~~I~~G 158 (165)
T 2zkr_i 120 SLARELSGTIK-EILGTAQSV-GCNVDG--RHPHDIIDDINSG 158 (165)
T ss_dssp CCCSSHHHHHH-HHHHHHHHH-TEEEC----------------
T ss_pred hcCccHHHHHH-HHHHHHHhC-eeEEeC--CCHHHHHHHHhCC
Confidence 34445667776 456778888 788774 4666666554444
No 112
>1r57_A Conserved hypothetical protein; GCN5, N-acetyltransferase, structural genomics, PSI, protein structure initiative; NMR {Staphylococcus aureus} SCOP: d.108.1.1 PDB: 2h5m_A*
Probab=22.81 E-value=70 Score=14.85 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=23.4
Q ss_pred EecCCCCCCcccHHHHHHHHHhhhCCCCeEEE
Q psy10038 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTE 35 (51)
Q Consensus 4 ~TP~l~~~~L~GitR~~ll~~~~~~~g~~v~e 35 (51)
+.|.....++-.-+-+.+++.+.+. |+....
T Consensus 43 V~p~~rg~GiG~~Ll~~~~~~a~~~-g~~~i~ 73 (102)
T 1r57_A 43 VSDELGGQGVGKKLLKAVVEHAREN-NLKIIA 73 (102)
T ss_dssp ECCSSSTTCTHHHHHHHHHHHHHHH-TCEEEE
T ss_pred ECHHHCCCCHHHHHHHHHHHHHHHc-CCCEEE
Confidence 4566666678888888888888888 777654
No 113
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A
Probab=22.71 E-value=52 Score=20.32 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=19.4
Q ss_pred CEEEecCCCCCCcccHHHHHHHHH-hhhCCCCe
Q psy10038 1 MEMITPTLDGLILPGITRMSILEL-SHQWNDYK 32 (51)
Q Consensus 1 ~~~~TP~l~~~~L~GitR~~ll~~-~~~~~g~~ 32 (51)
+.+|.|+++..+ +++.=..+++. .++. |+.
T Consensus 298 Iav~SP~LD~~G-NSv~G~~~le~ls~~~-~l~ 328 (330)
T 1mki_A 298 IGIYGPAIDEYG-NSLTGGMLLKHMAQEW-ELS 328 (330)
T ss_dssp EEEECSCBCTTS-SBHHHHHHHHHHHHHH-TCC
T ss_pred EEEECCCCCCCC-CcHHHHHHHHHHHHHh-CcC
Confidence 357999998876 66666666654 4444 443
No 114
>3brd_D Protein LIN-12; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans}
Probab=22.55 E-value=24 Score=14.13 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=5.6
Q ss_pred EEecCCCC
Q psy10038 3 MITPTLDG 10 (51)
Q Consensus 3 ~~TP~l~~ 10 (51)
+||||...
T Consensus 16 vW~PPME~ 23 (29)
T 3brd_D 16 VWMPPMEN 23 (29)
T ss_pred ccCCCccC
Confidence 67888654
No 115
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=21.92 E-value=20 Score=14.73 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=6.7
Q ss_pred cHHHHHHHHHh
Q psy10038 15 GITRMSILELS 25 (51)
Q Consensus 15 GitR~~ll~~~ 25 (51)
|++++.+++.+
T Consensus 20 GlsKe~LiqaL 30 (32)
T 1g2y_A 20 GLSKEALIQAL 30 (32)
T ss_dssp TCCHHHHHHHH
T ss_pred CCcHHHHHHHh
Confidence 56666666554
No 116
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=21.89 E-value=1.4e+02 Score=17.89 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHhhhCCCCeEEEEecCHHHHhchh
Q psy10038 14 PGITRMSILELSHQWNDYKVTERKITMPDIVQLS 47 (51)
Q Consensus 14 ~GitR~~ll~~~~~~~g~~v~e~~i~~~~l~~ad 47 (51)
.|+|=..+-..+... |++|.-..+.++.+.++.
T Consensus 14 aG~MG~giA~~~a~~-G~~V~l~D~~~~~l~~~~ 46 (319)
T 3ado_A 14 SGLVGRSWAMLFASG-GFRVKLYDIEPRQITGAL 46 (319)
T ss_dssp CSHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHH
Confidence 378888887777777 899999999998876654
No 117
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=21.76 E-value=72 Score=19.26 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=20.9
Q ss_pred CCCcccHHHHHHHHHhhhCCCCeEEE
Q psy10038 10 GLILPGITRMSILELSHQWNDYKVTE 35 (51)
Q Consensus 10 ~~~L~GitR~~ll~~~~~~~g~~v~e 35 (51)
.-.++|=.|+.+.++++++ |++|.-
T Consensus 271 ~K~~k~~~R~~i~~~l~~l-gi~v~k 295 (298)
T 2gfq_A 271 WKGSRGETRQLAKSLAQEL-GLEFIK 295 (298)
T ss_dssp STTSCHHHHHHHHHHHHHH-TCEEEE
T ss_pred cCCCCHHHHHHHHHHHHHC-CCEEEe
Confidence 3357889999999999999 898764
No 118
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=21.02 E-value=78 Score=18.92 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=21.6
Q ss_pred CCCCcccHHHHHHHHHhhhCCCCeEEE
Q psy10038 9 DGLILPGITRMSILELSHQWNDYKVTE 35 (51)
Q Consensus 9 ~~~~L~GitR~~ll~~~~~~~g~~v~e 35 (51)
+.-.++|=.|+.+.++++++ |++|.-
T Consensus 246 D~K~~k~~~r~~i~~~l~~~-gi~v~k 271 (282)
T 1yqe_A 246 DEKSVNSAVKKIVNEAAEVA-GVEVLK 271 (282)
T ss_dssp CTTTCCHHHHHHHHHHHHHH-TCEEEE
T ss_pred ecCCCCHHHHHHHHHHHHHC-CCEEEe
Confidence 44468899999999999999 898754
No 119
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=20.99 E-value=1.3e+02 Score=17.26 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=20.6
Q ss_pred HHhhhCCCCeEEEEecCHHHHhchhhhCC
Q psy10038 23 ELSHQWNDYKVTERKITMPDIVQLSREKR 51 (51)
Q Consensus 23 ~~~~~~~g~~v~e~~i~~~~l~~ade~~~ 51 (51)
+++++. |++|+...+...-+.+|=.+|+
T Consensus 186 ~~Le~~-Gy~Ve~~~~~~~~~~~al~~G~ 213 (268)
T 2b4l_A 186 KVLEDL-GYEVTLTQVEAGPMWTAIATGS 213 (268)
T ss_dssp HHHHHH-TCEEEEEECCTTHHHHHHHHTS
T ss_pred HHHHHc-CCceEEEECChHHHHHHHHCCC
Confidence 456677 8999998888766677666653
No 120
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=20.84 E-value=99 Score=15.86 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=25.3
Q ss_pred CEEEecCCCCC-Cccc-------HHHHHHHHHhhhCCCCeEEEEec
Q psy10038 1 MEMITPTLDGL-ILPG-------ITRMSILELSHQWNDYKVTERKI 38 (51)
Q Consensus 1 ~~~~TP~l~~~-~L~G-------itR~~ll~~~~~~~g~~v~e~~i 38 (51)
|++|=|++.++ ++-| +.-...++.+++. |++|+.--+
T Consensus 7 i~ifepamCCstGvCG~~vd~eL~~~~~~~~~lk~~-Gi~V~RyNL 51 (106)
T 3ktb_A 7 IEIFDPAMCCPTGLCGTNINPELMRIAVVIESLKKQ-GIIVTRHNL 51 (106)
T ss_dssp EEEEECSCSSTTSCSSSCCCHHHHHHHHHHHHHHHT-TCCCEEEET
T ss_pred EEEechhhccCCCCcCCCCCHHHHHHHHHHHHHHHC-CCEEEEEcc
Confidence 35788887554 4444 4455677889988 888877555
No 121
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.45 E-value=76 Score=15.48 Aligned_cols=14 Identities=0% Similarity=-0.315 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhCCC
Q psy10038 16 ITRMSILELSHQWND 30 (51)
Q Consensus 16 itR~~ll~~~~~~~g 30 (51)
-+++.|++++++. |
T Consensus 17 ~~~~~IL~lL~~~-g 30 (82)
T 1oyi_A 17 EIVCEAIKTIGIE-G 30 (82)
T ss_dssp HHHHHHHHHHSSS-T
T ss_pred HHHHHHHHHHHHc-C
Confidence 3677788888876 5
No 122
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=25.39 E-value=22 Score=18.57 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=21.7
Q ss_pred cHHHHHHHHHhhhCCCCeEEEEecCHHHHh
Q psy10038 15 GITRMSILELSHQWNDYKVTERKITMPDIV 44 (51)
Q Consensus 15 GitR~~ll~~~~~~~g~~v~e~~i~~~~l~ 44 (51)
|-+-..|++++++. |++|.+-+--...|+
T Consensus 26 ~~~A~~I~e~A~e~-gVPi~e~~~LAr~Ly 54 (114)
T 3b0z_B 26 GLIALRIREIGAEH-RVPTLEAPPLARALY 54 (114)
Confidence 45567888999998 899988766555554
Done!