RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10038
(51 letters)
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 78.0 bits (193), Expect = 1e-19
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 1 MEMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51
+E++TP L+G+ILPG+ R S+L+++ W +++V ER ITM +++ E R
Sbjct: 254 LELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGR 304
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 77.7 bits (192), Expect = 2e-19
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51
E+ TP LDG+ILPG+TR IL+L+HQW ++KV+ER +TM D+ R
Sbjct: 275 ELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNR 324
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 68.0 bits (167), Expect = 5e-16
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSREKR 51
++TP L G +LPGITR S+L+L+ + V ERKI + + + +
Sbjct: 261 RLVTPELSGSLLPGITRDSLLQLATDAG-FAVEERKIDVDEWQKKAGAGE 309
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 47.5 bits (114), Expect = 9e-09
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
T + +IL GITR ++ +++ + V E T +
Sbjct: 192 YTHPANNMILKGITRDVVIACANE-INMPVKEIPFTTHEA 230
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 47.6 bits (114), Expect = 9e-09
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKIT 39
++ITP+LD IL GITR ++++L+ + V ER +
Sbjct: 189 KLITPSLDSGILDGITRENVIKLAKS-LEIPVEERVVW 225
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 47.5 bits (114), Expect = 1e-08
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
TP ++ ILPGITR ++ Q + V E +T I
Sbjct: 189 YTPRVEDGILPGITRARLISHCQQ-HKMSVQEISLTKKRI 227
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 46.5 bits (111), Expect = 2e-08
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
TP+ G ILPG T+ ++ + + ++ E+ +++ D+
Sbjct: 233 RTPSPGGDILPGTTQAALFAHATE-KGWRCKEKDLSIDDL 271
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 44.1 bits (105), Expect = 1e-07
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
+ P L + G+ R +LE + + R ++M ++
Sbjct: 209 VAPDLRRCGVAGVMRAELLERAEG-IGVPLAIRDVSMAEL 247
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 44.0 bits (105), Expect = 2e-07
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
TP LD + GI R + L Q + Y++ E + ++ +
Sbjct: 188 YTPRLDQAGVNGIMRQFCIRLLAQ-SSYQLVEVQASLEES 226
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 43.4 bits (103), Expect = 3e-07
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
++ TP L L GITR +++ L+ + +V E++IT ++
Sbjct: 229 KLYTPDLAS-CLDGITRDTVITLAKE-AGIEVIEKRITRDEV 268
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 43.3 bits (103), Expect = 3e-07
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
+ TP LPGITR +I++L+ + +V E+ ++ +
Sbjct: 207 VLFTPPFTSSALPGITRDAIIKLAKE-LGIEVREQVLSRESL 247
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 43.0 bits (102), Expect = 4e-07
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
+ L GITR S++ ++ Y+V + T +
Sbjct: 206 VIYALEHSV-NLEGITRDSVIRIAKD-LGYEVQVVRATRDQL 245
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 39.2 bits (92), Expect = 1e-05
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQ 45
TP LD +LPG+ R +L+ + E + D+
Sbjct: 167 ATPRLDCGLLPGVLRAELLDE------GRAEEAIYSYDDLKS 202
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 37.1 bits (87), Expect = 5e-05
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 4 ITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
+G L GITR + E + +V +
Sbjct: 174 YLL--EG-GLEGITREKVAEAARGLG-LRVERGLFRPEGL 209
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 28.9 bits (65), Expect = 0.035
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 2 EMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDIVQ 45
+ ITP +L G R +LE K+ R+I D+ Q
Sbjct: 146 QWITPDKP--LLEGTQRAKLLE------QKKIIAREIFFEDLAQ 181
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 24.3 bits (52), Expect = 1.9
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 4 ITPTLDGLILPGITRMSILELSHQW-NDYK 32
+ + P I +S LELS K
Sbjct: 133 VDSDDKAKVPPLIRIVSGLELSDTKQKGKK 162
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 23.7 bits (52), Expect = 2.7
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Query: 13 LPGI-TRMSILELSHQWNDYKVTERKITMPDIVQL 46
+ G ++++ L+ +RK+ + IVQL
Sbjct: 338 IAGCQNTLAVM-LTE-----GYHKRKMPLTQIVQL 366
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 23.7 bits (50), Expect = 3.3
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 26 HQWNDYKVTERKITMPDIVQLSREK 50
H D++ E + DI+ + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDA 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.393
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 766,202
Number of extensions: 29702
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 18
Length of query: 51
Length of database: 6,701,793
Length adjustment: 23
Effective length of query: 28
Effective length of database: 6,059,610
Effective search space: 169669080
Effective search space used: 169669080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)