RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10038
         (51 letters)



>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 190

 Score = 26.7 bits (59), Expect = 0.097
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 7  TLDGL-ILPGITRMSILELSHQWNDYKVTERKITMPDIVQLSRE 49
          T+DG        R  +  LS+   +  V   +  +   V+L   
Sbjct: 28 TVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYI 71


>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
           [TaxId: 562]}
          Length = 269

 Score = 22.3 bits (46), Expect = 3.7
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 1   MEMITPTLDGLILPGITRMSILELSHQWNDYKVTERKITMPDI 43
             + TP LD   + GI R   + L  Q + Y++ E + ++ + 
Sbjct: 185 NVVYTPRLDQAGVNGIMRQFCIRLLAQSS-YQLVEVQASLEES 226


>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus
          subtilis [TaxId: 1423]}
          Length = 118

 Score = 21.3 bits (45), Expect = 8.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 28 WNDYKVTERKITM 40
           N+  V ERKITM
Sbjct: 47 INELAVLERKITM 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 186,322
Number of extensions: 5627
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 3
Length of query: 51
Length of database: 2,407,596
Length adjustment: 22
Effective length of query: 29
Effective length of database: 2,105,536
Effective search space: 61060544
Effective search space used: 61060544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)