Query psy10039
Match_columns 450
No_of_seqs 170 out of 222
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 16:17:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2175|consensus 100.0 2.2E-62 4.7E-67 505.2 20.6 295 3-311 163-457 (458)
2 KOG2175|consensus 97.0 0.0029 6.3E-08 67.3 8.9 277 22-314 5-304 (458)
3 PF10508 Proteasom_PSMB: Prote 96.8 0.12 2.5E-06 56.2 20.0 200 51-292 75-278 (503)
4 KOG0166|consensus 95.5 1.1 2.3E-05 49.0 18.5 241 3-292 196-436 (514)
5 PF01602 Adaptin_N: Adaptin N 95.2 0.21 4.6E-06 53.1 12.3 233 56-327 117-372 (526)
6 KOG2160|consensus 95.1 2.3 5E-05 44.2 18.7 193 9-246 89-282 (342)
7 PTZ00429 beta-adaptin; Provisi 94.8 8.9 0.00019 44.0 24.0 159 40-246 120-285 (746)
8 PF10508 Proteasom_PSMB: Prote 93.7 4.5 9.8E-05 44.0 18.2 221 43-312 109-348 (503)
9 cd00020 ARM Armadillo/beta-cat 92.9 2.9 6.4E-05 34.4 12.2 109 5-138 11-119 (120)
10 PF12460 MMS19_C: RNAPII trans 90.9 24 0.00052 37.3 20.0 213 17-256 162-404 (415)
11 PF12348 CLASP_N: CLASP N term 90.1 12 0.00026 35.5 14.6 193 4-244 6-204 (228)
12 PF01602 Adaptin_N: Adaptin N 89.9 14 0.0003 39.3 16.5 225 6-291 119-349 (526)
13 KOG1062|consensus 87.1 27 0.00059 40.2 16.6 123 52-206 141-266 (866)
14 PF03224 V-ATPase_H_N: V-ATPas 85.9 37 0.0008 34.3 15.9 209 15-263 69-286 (312)
15 PF08569 Mo25: Mo25-like; Int 85.2 51 0.0011 34.3 16.8 176 43-242 66-279 (335)
16 KOG0166|consensus 82.4 85 0.0018 34.7 18.1 202 46-286 145-346 (514)
17 cd00020 ARM Armadillo/beta-cat 80.8 6.3 0.00014 32.4 6.7 74 213-289 3-76 (120)
18 PF11707 Npa1: Ribosome 60S bi 80.0 68 0.0015 32.9 15.3 152 68-245 129-302 (330)
19 PF02985 HEAT: HEAT repeat; I 79.7 2.8 6.1E-05 27.9 3.4 30 54-83 1-30 (31)
20 PF12783 Sec7_N: Guanine nucle 79.5 40 0.00087 30.8 12.2 82 45-139 65-146 (168)
21 PLN03200 cellulose synthase-in 77.9 2.2E+02 0.0048 36.8 24.0 255 4-303 16-284 (2102)
22 PF14664 RICTOR_N: Rapamycin-i 76.5 93 0.002 32.8 15.2 123 13-174 78-200 (371)
23 PF13251 DUF4042: Domain of un 75.6 76 0.0016 30.2 13.9 70 20-96 3-79 (182)
24 PF04826 Arm_2: Armadillo-like 73.1 94 0.002 31.0 13.6 69 218-290 135-203 (254)
25 PF04499 SAPS: SIT4 phosphatas 72.9 36 0.00079 37.1 11.4 140 4-145 65-235 (475)
26 PF08767 CRM1_C: CRM1 C termin 70.6 1.3E+02 0.0029 30.8 15.8 108 13-138 130-243 (319)
27 PF10257 RAI16-like: Retinoic 69.2 10 0.00023 39.4 6.1 78 211-291 3-84 (353)
28 KOG1293|consensus 69.2 45 0.00097 37.7 11.1 120 185-313 434-553 (678)
29 smart00638 LPD_N Lipoprotein N 68.9 65 0.0014 35.3 12.5 113 20-136 440-559 (574)
30 PF12717 Cnd1: non-SMC mitotic 68.5 92 0.002 28.8 11.8 31 57-87 29-59 (178)
31 PRK09687 putative lyase; Provi 67.2 1.4E+02 0.0031 29.9 16.3 81 39-139 37-120 (280)
32 KOG1248|consensus 67.2 2.9E+02 0.0064 33.5 21.5 58 17-83 627-684 (1176)
33 PF13646 HEAT_2: HEAT repeats; 64.8 32 0.0007 27.1 7.0 55 55-134 33-87 (88)
34 PF11841 DUF3361: Domain of un 64.3 1.3E+02 0.0028 28.3 12.9 124 20-164 9-150 (160)
35 KOG2734|consensus 62.0 2.5E+02 0.0054 30.8 16.1 226 19-273 141-374 (536)
36 KOG4224|consensus 61.3 64 0.0014 34.5 9.9 145 47-274 202-347 (550)
37 KOG0946|consensus 60.5 1.6E+02 0.0035 34.4 13.4 214 20-256 183-409 (970)
38 KOG2582|consensus 60.1 83 0.0018 33.5 10.5 98 210-329 226-325 (422)
39 smart00185 ARM Armadillo/beta- 56.2 15 0.00033 24.8 3.1 36 210-245 5-40 (41)
40 KOG2171|consensus 53.9 1.7E+02 0.0036 35.2 12.6 70 19-91 115-200 (1075)
41 PF00514 Arm: Armadillo/beta-c 53.0 25 0.00054 24.5 3.8 36 210-245 5-40 (41)
42 KOG0168|consensus 52.2 4.7E+02 0.01 31.0 15.7 220 51-291 209-451 (1051)
43 KOG1061|consensus 52.0 87 0.0019 36.0 9.7 156 50-214 157-323 (734)
44 KOG1061|consensus 51.4 1.5E+02 0.0033 34.1 11.4 177 60-262 128-323 (734)
45 PF04078 Rcd1: Cell differenti 50.9 90 0.002 31.6 8.7 82 188-270 61-149 (262)
46 PF05804 KAP: Kinesin-associat 50.4 72 0.0016 36.6 8.9 89 210-305 324-423 (708)
47 PF12922 Cnd1_N: non-SMC mitot 49.3 44 0.00094 30.9 6.0 70 127-208 98-167 (171)
48 PF04388 Hamartin: Hamartin pr 49.1 1.9E+02 0.0042 33.0 12.0 52 194-246 88-140 (668)
49 PF08167 RIX1: rRNA processing 48.8 1E+02 0.0022 28.4 8.3 124 56-212 28-152 (165)
50 smart00185 ARM Armadillo/beta- 48.1 45 0.00097 22.3 4.5 35 47-81 6-40 (41)
51 PRK10167 hypothetical protein; 44.5 87 0.0019 29.6 7.1 106 215-327 25-144 (169)
52 PF11698 V-ATPase_H_C: V-ATPas 44.0 87 0.0019 28.0 6.7 60 187-247 57-116 (119)
53 KOG1293|consensus 42.4 1.3E+02 0.0029 34.1 9.1 76 59-140 445-534 (678)
54 PF13646 HEAT_2: HEAT repeats; 40.9 66 0.0014 25.2 5.1 51 61-137 8-58 (88)
55 PF00514 Arm: Armadillo/beta-c 39.9 52 0.0011 22.8 3.8 34 47-80 6-39 (41)
56 PLN03200 cellulose synthase-in 39.9 1E+03 0.022 31.3 26.8 212 52-302 608-840 (2102)
57 PF06371 Drf_GBD: Diaphanous G 39.5 23 0.00049 32.5 2.4 32 50-81 155-186 (187)
58 PF12719 Cnd3: Nuclear condens 38.0 4.3E+02 0.0093 26.5 14.8 106 14-140 38-144 (298)
59 PF06025 DUF913: Domain of Unk 37.5 58 0.0013 34.4 5.3 65 22-91 79-147 (379)
60 PF01347 Vitellogenin_N: Lipop 35.8 65 0.0014 35.4 5.7 78 20-97 484-568 (618)
61 PF08167 RIX1: rRNA processing 35.4 2.1E+02 0.0045 26.4 8.1 91 214-307 22-126 (165)
62 PF12717 Cnd1: non-SMC mitotic 35.2 1.1E+02 0.0024 28.3 6.3 108 66-202 1-111 (178)
63 PF10363 DUF2435: Protein of u 35.1 2.3E+02 0.005 23.8 7.7 81 3-95 5-85 (92)
64 KOG1992|consensus 35.1 3.7E+02 0.0081 31.7 11.3 118 188-313 261-400 (960)
65 PF14500 MMS19_N: Dos2-interac 34.9 4.8E+02 0.01 26.1 14.2 150 58-249 4-156 (262)
66 COG5240 SEC21 Vesicle coat com 34.8 3E+02 0.0066 31.3 10.2 177 56-251 306-541 (898)
67 PF06367 Drf_FH3: Diaphanous F 34.6 3.8E+02 0.0082 24.9 12.7 79 4-85 24-103 (197)
68 PF03224 V-ATPase_H_N: V-ATPas 33.5 2.9E+02 0.0063 27.9 9.5 104 188-293 71-181 (312)
69 PF07560 DUF1539: Domain of Un 33.3 51 0.0011 29.8 3.5 33 3-35 69-101 (126)
70 PF12765 Cohesin_HEAT: HEAT re 32.7 23 0.00051 25.5 1.1 25 53-77 18-42 (42)
71 PF04499 SAPS: SIT4 phosphatas 32.7 2.3E+02 0.0051 30.9 9.1 86 210-296 55-153 (475)
72 cd03561 VHS VHS domain family; 32.4 1.8E+02 0.0039 25.7 7.0 75 188-272 18-92 (133)
73 KOG2129|consensus 31.4 32 0.0007 36.9 2.2 23 368-390 319-341 (552)
74 smart00288 VHS Domain present 29.9 1.8E+02 0.0038 25.9 6.5 73 189-271 19-91 (133)
75 cd03572 ENTH_epsin_related ENT 29.3 1.1E+02 0.0023 27.5 4.9 52 217-271 38-89 (122)
76 PF14911 MMS22L_C: S-phase gen 28.8 3.1E+02 0.0067 29.2 8.9 32 54-85 258-290 (373)
77 PF04826 Arm_2: Armadillo-like 28.2 6.1E+02 0.013 25.3 13.6 155 45-244 45-203 (254)
78 KOG2274|consensus 28.2 4.2E+02 0.0091 31.5 10.3 127 4-142 574-721 (1005)
79 PLN03076 ARF guanine nucleotid 28.0 6.1E+02 0.013 32.6 12.5 93 238-330 652-756 (1780)
80 PF13001 Ecm29: Proteasome sta 27.5 1.3E+02 0.0027 33.0 6.1 113 6-139 324-443 (501)
81 PF08045 CDC14: Cell division 27.4 6.6E+02 0.014 25.4 13.7 135 16-172 104-252 (257)
82 PRK13800 putative oxidoreducta 27.3 4.1E+02 0.0088 31.2 10.5 111 2-141 622-745 (897)
83 PF06371 Drf_GBD: Diaphanous G 25.9 1.6E+02 0.0034 26.8 5.6 54 232-290 131-185 (187)
84 PF12333 Ipi1_N: Rix1 complex 25.8 1.2E+02 0.0027 25.8 4.5 39 56-94 14-53 (102)
85 cd03567 VHS_GGA VHS domain fam 25.3 4.1E+02 0.009 24.1 8.1 110 189-323 20-132 (139)
86 PF10441 Urb2: Urb2/Npa2 famil 25.2 1.3E+02 0.0028 29.0 5.2 43 185-227 49-92 (223)
87 KOG1062|consensus 25.2 1.7E+02 0.0037 34.1 6.6 68 56-143 316-383 (866)
88 PF12460 MMS19_C: RNAPII trans 24.7 1.7E+02 0.0037 30.9 6.3 61 27-92 344-404 (415)
89 COG5111 RPC34 DNA-directed RNA 24.5 70 0.0015 32.0 3.0 53 257-314 183-250 (301)
90 PF05536 Neurochondrin: Neuroc 24.2 1E+03 0.022 26.5 16.1 202 4-249 8-216 (543)
91 PF13513 HEAT_EZ: HEAT-like re 24.2 1.2E+02 0.0025 22.1 3.6 53 68-136 2-54 (55)
92 PF04838 Baculo_LEF5: Baculovi 23.4 76 0.0016 29.6 2.9 41 286-326 8-50 (159)
93 PF12755 Vac14_Fab1_bd: Vacuol 22.8 4.7E+02 0.01 22.1 7.8 54 55-122 29-82 (97)
94 PF13251 DUF4042: Domain of un 21.6 1.3E+02 0.0028 28.7 4.2 164 68-248 1-176 (182)
95 KOG1991|consensus 20.8 1.5E+03 0.033 27.3 18.6 187 14-246 428-624 (1010)
96 PRK09687 putative lyase; Provi 20.2 8.8E+02 0.019 24.3 13.2 77 2-80 24-118 (280)
No 1
>KOG2175|consensus
Probab=100.00 E-value=2.2e-62 Score=505.16 Aligned_cols=295 Identities=53% Similarity=0.859 Sum_probs=283.4
Q ss_pred HHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 3 EKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 3 ~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
..|||+++++++++.++|+++|.|+||||+++|+||++.|.+||++|++.|||++++++++++|.++|.++|||+..++|
T Consensus 163 l~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve 242 (458)
T KOG2175|consen 163 LIELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVE 242 (458)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhh
Q psy10039 83 FSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKY 162 (450)
Q Consensus 83 ~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~ 162 (450)
++|+|+|++.++++. ...++.+++++++++|++|.||++|..+|++.++++||||++|.+.+ .++.+|+++||++
T Consensus 243 ~~~~~i~~~~~~~~~---~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~--~~~se~l~~~~~~ 317 (458)
T KOG2175|consen 243 MSPSMIRSFTLGEAL---DPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLA--SEKSEFLNFFYKH 317 (458)
T ss_pred cCHHHHHHHHHHhhc---CchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCcc--chhHHHhhhhhcc
Confidence 999999999999986 33367889999999999999999999999999999999999999744 6899999999999
Q ss_pred hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHH
Q psy10039 163 SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMR 242 (450)
Q Consensus 163 ~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R 242 (450)
|++.+.+|...+++++ +.++.+..++|++|||+.||+|+||+|+++++++++|+.|++++|++|+++|+||.|
T Consensus 318 c~~~~~~p~~~~~~s~-------~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~~ 390 (458)
T KOG2175|consen 318 CMHSLSAPLVGNTSSN-------QSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYLR 390 (458)
T ss_pred ccccCCCcchhhcccc-------cccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhhh
Confidence 9999999999887654 567889999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHHhhChHHHHHHHHHHhHhhcc
Q psy10039 243 KIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIKLEDIKVLCSHVVETYGDELE 311 (450)
Q Consensus 243 ~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir~eNik~Li~hlve~y~~~l~ 311 (450)
.++.++|+||+||++|+ |+|+++.|.+||.||||+|||+|+||||||.||+|+|++|+|++||+.++
T Consensus 391 ~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~ 457 (458)
T KOG2175|consen 391 KIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA 457 (458)
T ss_pred ccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence 99999999999999999 99999999999999999999999999999999999999999999999875
No 2
>KOG2175|consensus
Probab=96.97 E-value=0.0029 Score=67.27 Aligned_cols=277 Identities=11% Similarity=0.074 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhh-cc
Q psy10039 22 DLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAAC-IS 100 (450)
Q Consensus 22 d~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~-~s 100 (450)
...++.++-|.+++..+-+.-.++|....+....+-+..+.+.-..-++....+||..|++ |+..++-.-..+... -+
T Consensus 5 ~~~~r~~~~~~ie~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~-d~~im~v~g~lEydp~~~ 83 (458)
T KOG2175|consen 5 TDQRREKLVLALENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFD-DECIMDVIGCLEYDPAVP 83 (458)
T ss_pred cHHHHHHHHHHHhcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhc-cccccccccccccCccCC
Confidence 4567888999999999999999999999999888888888888888899999999999999 888876543333221 11
Q ss_pred cCCCcccHHHH--HHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCC------c--------hhHHHHHHHHHhh--
Q psy10039 101 REEQDPMLVNV--IIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSIN------K--------TEKCEFLNYFYKY-- 162 (450)
Q Consensus 101 ~~e~~~~Ll~~--Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~------~--------~e~~~fl~~FY~~-- 162 (450)
+...+...+.. ..+..+--.|| ++..++-++.|+.+=-+.....++ . ..+..+++++++.
T Consensus 84 ~~k~HR~~l~~~~~f~e~ipi~dp--~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~ 161 (458)
T KOG2175|consen 84 QSKKHREFLSLLAKFKEVIPISDP--ELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEK 161 (458)
T ss_pred ChhhhHHHHHhhccceeeeecCCH--HHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCch
Confidence 11123333222 45556677788 779999888877543222222110 0 1345677888865
Q ss_pred hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHH----HhhccCCcchhHHHH
Q psy10039 163 SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVL----VLMKSCHTFLVLSSL 238 (450)
Q Consensus 163 ~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl----~Ll~~~~K~L~L~Al 238 (450)
.+.-||+-+..... +.+....+.|+|+..|.+.+.|.+..+-.+...-+-.+|+ ..++..++-++.+|.
T Consensus 162 ~l~eLf~~l~~~~t-------~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~ 234 (458)
T KOG2175|consen 162 FLIELFARLRSEST-------DDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAAT 234 (458)
T ss_pred HHHHHHHHhcCCch-------HHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHH
Confidence 24445554433211 1256678999999999999999988876533222222233 335566778999999
Q ss_pred HHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHHhhChHHHHHHHHHHhHhhccCcc
Q psy10039 239 RFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIKLEDIKVLCSHVVETYGDELESIH 314 (450)
Q Consensus 239 Rf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir~eNik~Li~hlve~y~~~l~~i~ 314 (450)
+-+.+++-.+= -++++...+-..+.- .+..--|+++|+.++.+|+-+.+..+.+..+.--.+.+.+....
T Consensus 235 di~~~~ve~~~-----~~i~~~~~~~~~~~~-~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~ 304 (458)
T KOG2175|consen 235 DILARLVEMSP-----SMIRSFTLGEALDPD-DEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLA 304 (458)
T ss_pred HHHHHHHhcCH-----HHHHHHHHHhhcCch-hhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCcc
Confidence 99888887432 233333322222222 34556799999999999999999988888888888888888775
No 3
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.83 E-value=0.12 Score=56.21 Aligned_cols=200 Identities=19% Similarity=0.226 Sum_probs=138.2
Q ss_pred hCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHH
Q psy10039 51 SLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQL 130 (450)
Q Consensus 51 ~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql 130 (450)
..++.+.+..+|.|+++.||..++-.|..++.|+...++-. . +..++..++..| .+.| .++....
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~-----~-------~~~l~~~i~~~L-~~~d--~~Va~~A 139 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL-----V-------DNELLPLIIQCL-RDPD--LSVAKAA 139 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh-----c-------CccHHHHHHHHH-cCCc--HHHHHHH
Confidence 45566788888999999999988888888887775543221 1 344566666554 4444 5889999
Q ss_pred HHHHHHhcCCCCCCccCCchhHHHHHHHHHhh-hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchh
Q psy10039 131 MSILKILIDPDNMLSSINKTEKCEFLNYFYKY-SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHI 209 (450)
Q Consensus 131 ~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~-~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~ri 209 (450)
..+|+.|...+. -++..|+. ....| ..++..+ +..+--.++|+++-...+++..
T Consensus 140 ~~~L~~l~~~~~------------~~~~l~~~~~~~~L-~~l~~~~-----------~~~vR~Rv~el~v~i~~~S~~~- 194 (503)
T PF10508_consen 140 IKALKKLASHPE------------GLEQLFDSNLLSKL-KSLMSQS-----------SDIVRCRVYELLVEIASHSPEA- 194 (503)
T ss_pred HHHHHHHhCCch------------hHHHHhCcchHHHH-HHHHhcc-----------CHHHHHHHHHHHHHHHhcCHHH-
Confidence 999999986421 11112221 11111 1122110 2233345777777766665544
Q ss_pred hhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcC--C-CCcchhhHHHHH
Q psy10039 210 KNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNK--G-RYNLLDSAVLEL 286 (450)
Q Consensus 210 K~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~--~-R~NLlnSA~LEl 286 (450)
-.++.+.+++.+++..+...+-.+++.|+-.+..+..-+.. ..||.+.+++.-+.+.+.... + -..++=.+.+.|
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g--~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG--LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH--HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 45788899999999999999999999999999999883333 799999999999999986542 3 456777788899
Q ss_pred HHHHHh
Q psy10039 287 FEYIKL 292 (450)
Q Consensus 287 fe~Ir~ 292 (450)
|..+-.
T Consensus 273 ~g~la~ 278 (503)
T PF10508_consen 273 FGNLAR 278 (503)
T ss_pred HHHHHh
Confidence 998876
No 4
>KOG0166|consensus
Probab=95.50 E-value=1.1 Score=49.04 Aligned_cols=241 Identities=16% Similarity=0.176 Sum_probs=152.8
Q ss_pred HHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 3 EKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 3 ~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
++.|-..+..+.. ..-.|.+.--|-.+|.= |+=+|+ .. .=..+|++|...+.+.|..|.+-|+=.|.++.|
T Consensus 196 l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrg-k~P~P~--~~-----~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 196 LDPLLRLLNKSDK-LSMLRNATWTLSNLCRG-KNPSPP--FD-----VVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred hHHHHHHhccccc-hHHHHHHHHHHHHHHcC-CCCCCc--HH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 4445555554443 34455666666666642 332222 11 113578999999999999999888888999999
Q ss_pred hChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhh
Q psy10039 83 FSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKY 162 (450)
Q Consensus 83 ~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~ 162 (450)
+.+..++-.+.-.. .-.|+++|-.... +++ .=|||++= |+.++ +..+....++ .
T Consensus 267 g~ne~iq~vi~~gv------------v~~LV~lL~~~~~-----~v~-~PaLRaiG---NIvtG-~d~QTq~vi~----~ 320 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGV------------VPRLVDLLGHSSP-----KVV-TPALRAIG---NIVTG-SDEQTQVVIN----S 320 (514)
T ss_pred CChHHHHHHHHccc------------hHHHHHHHcCCCc-----ccc-cHHHhhcc---ceeec-cHHHHHHHHh----c
Confidence 98888776544322 3345665555332 222 44666654 33332 1122222222 1
Q ss_pred hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHH
Q psy10039 163 SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMR 242 (450)
Q Consensus 163 ~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R 242 (450)
.+-.-+.+|+.....+.+ -.-.|=.+|-.+..-+-+++ .|+.-|++..++.+|...+.-++--|.--+-
T Consensus 321 ~~L~~l~~ll~~s~~~~i----------kkEAcW~iSNItAG~~~qiq-aVida~l~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESI----------KKEACWTISNITAGNQEQIQ-AVIDANLIPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred ChHHHHHHHhccCcchhH----------HHHHHHHHHHhhcCCHHHHH-HHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence 111222333333222221 11244455554554444554 7889999999999999999669999999999
Q ss_pred HHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHHh
Q psy10039 243 KIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIKL 292 (450)
Q Consensus 243 ~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir~ 292 (450)
++.+-.+.--.+||++.++..|+.++| ...+.. +=+.||+=++.|.+
T Consensus 390 N~ts~g~~~qi~yLv~~giI~plcdlL-~~~D~~--ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPDVK--IILVALDGLENILK 436 (514)
T ss_pred hhcccCCHHHHHHHHHcCCchhhhhcc-cCCChH--HHHHHHHHHHHHHH
Confidence 999999999999999999999999999 333333 37899999998875
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.21 E-value=0.21 Score=53.07 Aligned_cols=233 Identities=14% Similarity=0.171 Sum_probs=121.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q psy10039 56 PALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILK 135 (450)
Q Consensus 56 ~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk 135 (450)
+.|.-.+.++++.||..|+--+..+...+|..++.. ++..+.+ ++.|.|| |+.....-++.
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~----------------~~~~l~~-lL~d~~~--~V~~~a~~~l~ 177 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE----------------LIPKLKQ-LLSDKDP--SVVSAALSLLS 177 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG----------------HHHHHHH-HTTHSSH--HHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH----------------HHHHHhh-hccCCcc--hhHHHHHHHHH
Confidence 344445556666666666666666666666655432 3444444 4488887 88888888888
Q ss_pred Hh-cCCCCCCccCCchhHHHHHHHHHhhhHHH-------hccccccCCCCCcccccccch---HHHHHHHHHHHH-----
Q psy10039 136 IL-IDPDNMLSSINKTEKCEFLNYFYKYSIHL-------LMDPLLDNTKKDEVQVDSYHN---AQLLGVILELLS----- 199 (450)
Q Consensus 136 ~L-LDp~~m~~~~~~~e~~~fl~~FY~~~~~~-------L~~PL~~~~~~~~~~~~~~~~---~~ll~~l~eLL~----- 199 (450)
.+ -.|+ .-..++..+|...... +..-++..-.. ........ ..++..+..+|.
T Consensus 178 ~i~~~~~---------~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~--~~~~~~~~~~~~~~i~~l~~~l~s~~~~ 246 (526)
T PF01602_consen 178 EIKCNDD---------SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRR--YAPMEPEDADKNRIIEPLLNLLQSSSPS 246 (526)
T ss_dssp HHHCTHH---------HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTT--STSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCcc---------hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHh--cccCChhhhhHHHHHHHHHHHhhccccH
Confidence 88 2111 0014566666554332 22112111000 00000111 123333332221
Q ss_pred --H-HHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCC
Q psy10039 200 --F-CVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRY 276 (450)
Q Consensus 200 --F-cv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~ 276 (450)
| |++-=.+.....-+-..++..+..++.+++.-++..|++.+..++... ...++.+-+.+|.=..+.+
T Consensus 247 V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---------~~~v~~~~~~~~~l~~~~d 317 (526)
T PF01602_consen 247 VVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---------PPAVFNQSLILFFLLYDDD 317 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---------HHHHGTHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---------chhhhhhhhhhheecCCCC
Confidence 1 111111111111245566777778888888779999999999988865 2223344444444334555
Q ss_pred cchhhHHHHHHHHHH-hhChHHHHHHHHHHhHhh-c--cCccchhhHHHHHHHHH
Q psy10039 277 NLLDSAVLELFEYIK-LEDIKVLCSHVVETYGDE-L--ESIHYVQTFRSLRLKYN 327 (450)
Q Consensus 277 NLlnSA~LElfe~Ir-~eNik~Li~hlve~y~~~-l--~~i~yv~tf~~L~~rye 327 (450)
.=+-...|+++-.+- .+|++.++..|.+--.+. = -....+.+...+..+|.
T Consensus 318 ~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 318 PSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred hhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 667777778776665 479999888888443221 0 01234556666666663
No 6
>KOG2160|consensus
Probab=95.10 E-value=2.3 Score=44.24 Aligned_cols=193 Identities=19% Similarity=0.179 Sum_probs=127.0
Q ss_pred hhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHH
Q psy10039 9 LLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFI 88 (450)
Q Consensus 9 ~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lv 88 (450)
.+.+++.+.+.|.++..=|.++|-==.| =..|+++|.+.++---+.+.+..+|..|+.+|.+++..+|-..
T Consensus 89 ~~~~~s~~le~ke~ald~Le~lve~iDn---------Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q 159 (342)
T KOG2160|consen 89 ILNSSSVDLEDKEDALDNLEELVEDIDN---------ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQ 159 (342)
T ss_pred ccCcccCCHHHHHHHHHHHHHHHHhhhh---------HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 4456677777888887777777753332 2467887777777779999999999999999999999999875
Q ss_pred HHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhc
Q psy10039 89 RDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLM 168 (450)
Q Consensus 89 R~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~ 168 (450)
-.++-. + .+..|+..+-.+.+ .+.+.++.-|+-.|+-- +++-.+.|+.. +....|.
T Consensus 160 e~v~E~----------~--~L~~Ll~~ls~~~~--~~~r~kaL~AissLIRn-------~~~g~~~fl~~---~G~~~L~ 215 (342)
T KOG2160|consen 160 EQVIEL----------G--ALSKLLKILSSDDP--NTVRTKALFAISSLIRN-------NKPGQDEFLKL---NGYQVLR 215 (342)
T ss_pred HHHHHc----------c--cHHHHHHHHccCCC--chHHHHHHHHHHHHHhc-------CcHHHHHHHhc---CCHHHHH
Confidence 443221 2 45566666665443 69999999999999964 22333445432 1112221
Q ss_pred cccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHH-hhccCCcchhHHHHHHHHHHhc
Q psy10039 169 DPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLV-LMKSCHTFLVLSSLRFMRKIIA 246 (450)
Q Consensus 169 ~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~-Ll~~~~K~L~L~AlRf~R~iI~ 246 (450)
|++.. ..+...+....+.|++..++.|.+.-. +++.-...+++. +..+-+-...-+|++..=+.+.
T Consensus 216 -~vl~~---------~~~~~~lkrK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 216 -DVLQS---------NNTSVKLKRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred -HHHHc---------CCcchHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 12221 123455777888999999998877644 666666666664 4444444588888877554443
No 7
>PTZ00429 beta-adaptin; Provisional
Probab=94.77 E-value=8.9 Score=44.03 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHhCCCHHH-------HHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHH
Q psy10039 40 QAKENFYKTLSSLGILPA-------LEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVI 112 (450)
Q Consensus 40 ~~r~~ff~~Lv~~GL~~v-------i~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~L 112 (450)
.-|.--.|+|..-++-.+ |.-++.+.++.||.+|+=-+..+..++|.++.. .-++..|
T Consensus 120 ~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~---------------~~~~~~L 184 (746)
T PTZ00429 120 VVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ---------------QDFKKDL 184 (746)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc---------------cchHHHH
Confidence 445555666666555444 444677889999998888888888888876521 1234556
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHH
Q psy10039 113 IEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLG 192 (450)
Q Consensus 113 i~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~ 192 (450)
.+ |+.|+|| ++....+-+|..+-... +..-+...-.+ .+|..-|.+ .+.+...
T Consensus 185 ~~-LL~D~dp--~Vv~nAl~aL~eI~~~~--------~~~l~l~~~~~----~~Ll~~L~e------------~~EW~Qi 237 (746)
T PTZ00429 185 VE-LLNDNNP--VVASNAAAIVCEVNDYG--------SEKIESSNEWV----NRLVYHLPE------------CNEWGQL 237 (746)
T ss_pred HH-HhcCCCc--cHHHHHHHHHHHHHHhC--------chhhHHHHHHH----HHHHHHhhc------------CChHHHH
Confidence 66 6789998 77877777777664321 11111122222 222222211 2356666
Q ss_pred HHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhc
Q psy10039 193 VILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIA 246 (450)
Q Consensus 193 ~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~ 246 (450)
.|+++|+-...... . -..+++.++...+.+..--++++|+|++=.+..
T Consensus 238 ~IL~lL~~y~P~~~---~---e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 238 YILELLAAQRPSDK---E---SAETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHHhcCCCCc---H---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 88888865432211 1 124788888888888887899999998776643
No 8
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.66 E-value=4.5 Score=44.00 Aligned_cols=221 Identities=17% Similarity=0.247 Sum_probs=133.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCc
Q psy10039 43 ENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDP 122 (450)
Q Consensus 43 ~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~ 122 (450)
......+++.|++..|-.+++++|..+-..|+.+|..|..+.+.+ +.++. ..++..|...|-+..+
T Consensus 109 ~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~--~~l~~-----------~~~~~~L~~l~~~~~~- 174 (503)
T PF10508_consen 109 EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL--EQLFD-----------SNLLSKLKSLMSQSSD- 174 (503)
T ss_pred HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH--HHHhC-----------cchHHHHHHHHhccCH-
Confidence 456777889999999999999999999999999999999987644 12222 1225556666655333
Q ss_pred chhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHH--HHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHH
Q psy10039 123 ELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNY--FYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSF 200 (450)
Q Consensus 123 ~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~--FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~F 200 (450)
-++.++.+++-.+..-. ++--++... +++..+..| . ..+..+-.+.+|+|+=
T Consensus 175 --~vR~Rv~el~v~i~~~S--------~~~~~~~~~sgll~~ll~eL-------~---------~dDiLvqlnalell~~ 228 (503)
T PF10508_consen 175 --IVRCRVYELLVEIASHS--------PEAAEAVVNSGLLDLLLKEL-------D---------SDDILVQLNALELLSE 228 (503)
T ss_pred --HHHHHHHHHHHHHHhcC--------HHHHHHHHhccHHHHHHHHh-------c---------CccHHHHHHHHHHHHH
Confidence 45889999888776431 111112211 222222211 1 1223455678898877
Q ss_pred HHhhccchhhhhhhhhhHHHHHHHhhccC------CcchhHHHHHHHHHHhcC-ChhHHHHHHHhhCchHHHHHHhhhcC
Q psy10039 201 CVEHHSYHIKNFVLNKDLLRKVLVLMKSC------HTFLVLSSLRFMRKIIAM-KDDFYNRYIIKGHLFQPVIDTFNRNK 273 (450)
Q Consensus 201 cv~~H~~riK~fil~~~ll~rVl~Ll~~~------~K~L~L~AlRf~R~iI~l-~Defy~ryiik~nLf~PIl~~f~~n~ 273 (450)
..+ +.+...|+.+.+++.++..++... ..++..+.++|+-++-.. ...+...| .-++..+.+..
T Consensus 229 La~--~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-------p~~~~~l~~~~ 299 (503)
T PF10508_consen 229 LAE--TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-------PAFLERLFSML 299 (503)
T ss_pred HHc--ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-------HHHHHHHHHHh
Confidence 655 223356999999999999887522 335778889999998764 33333333 33333333321
Q ss_pred -CCCcchhhHHHHHHHHHHh--hChHHH-------HHHHHHHhHhhccC
Q psy10039 274 -GRYNLLDSAVLELFEYIKL--EDIKVL-------CSHVVETYGDELES 312 (450)
Q Consensus 274 -~R~NLlnSA~LElfe~Ir~--eNik~L-------i~hlve~y~~~l~~ 312 (450)
..|=-.--+.+|=+-.|-. ++-..| +.++++.|+.....
T Consensus 300 ~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~ 348 (503)
T PF10508_consen 300 ESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS 348 (503)
T ss_pred CCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC
Confidence 2222222344666666643 332223 35677777776654
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.88 E-value=2.9 Score=34.42 Aligned_cols=109 Identities=21% Similarity=0.162 Sum_probs=76.4
Q ss_pred HHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhC
Q psy10039 5 DLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFS 84 (450)
Q Consensus 5 eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~d 84 (450)
.|...+++++ ..-|..++.-|..+|.-+ ......+++.|.++.+-..|+++++.+|..+.-.|..|..+.
T Consensus 11 ~l~~~l~~~~--~~~~~~a~~~l~~l~~~~--------~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 11 ALVSLLSSSD--ENVQREAAWALSNLSAGN--------NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHHhcCC--------HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3455555554 567888888877766552 333445567899999999999999999999999999999887
Q ss_pred hhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc
Q psy10039 85 PSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILI 138 (450)
Q Consensus 85 p~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LL 138 (450)
+.. +..+.+ .-++..|++.|-.+ +. .++.+...+|..|.
T Consensus 81 ~~~-~~~~~~-----------~g~l~~l~~~l~~~-~~--~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDN-KLIVLE-----------AGGVPKLVNLLDSS-NE--DIQKNATGALSNLA 119 (120)
T ss_pred HHH-HHHHHH-----------CCChHHHHHHHhcC-CH--HHHHHHHHHHHHhh
Confidence 643 232222 12467777766543 43 66888888887663
No 10
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.90 E-value=24 Score=37.29 Aligned_cols=213 Identities=19% Similarity=0.269 Sum_probs=134.0
Q ss_pred hHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh--ChhHHHHHHHH
Q psy10039 17 ELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF--SPSFIRDYTLQ 94 (450)
Q Consensus 17 ~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~--dp~lvR~~~~~ 94 (450)
...++-.+.|-.-+|++-|+...++=..+.+ ..++++.+.++..+|..+.-++..+++- +...+.+++-.
T Consensus 162 ~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~--------~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~ 233 (415)
T PF12460_consen 162 EQQSRLVILFSAILCSLRKDVSLPDLEELLQ--------SLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDS 233 (415)
T ss_pred cccccHHHHHHHHHHcCCcccCccCHHHHHH--------HHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHH
Confidence 4577888899999999999998663333333 3677889999999999999999999996 44444444332
Q ss_pred hhhhc-c------------------------cCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-CCCCccCC
Q psy10039 95 QAACI-S------------------------REEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDP-DNMLSSIN 148 (450)
Q Consensus 95 q~~~~-s------------------------~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp-~~m~~~~~ 148 (450)
-.... + .......+++.|++.| .+ + .+..++++++.+|+.+ +......+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL-~~--~--~~g~~aA~~f~il~~d~~~~l~~~~ 308 (415)
T PF12460_consen 234 LLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL-SS--P--ELGQQAAKAFGILLSDSDDVLNKEN 308 (415)
T ss_pred HHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh-CC--h--hhHHHHHHHHhhHhcCcHHhcCccc
Confidence 21100 0 0112334455555533 22 3 3366788888888877 44443222
Q ss_pred -chhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhh-hhhHHHHHHHhh
Q psy10039 149 -KTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVL-NKDLLRKVLVLM 226 (450)
Q Consensus 149 -~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil-~~~ll~rVl~Ll 226 (450)
-.-|--|=+-||...+|+|.+..-..... .-.+.+--|+..++|=|.-+ +.- -..++.=+++-+
T Consensus 309 ~a~vklLykQR~F~~~~p~L~~~~~~~~~~------------~k~~yL~ALs~ll~~vP~~v--l~~~l~~LlPLLlqsL 374 (415)
T PF12460_consen 309 HANVKLLYKQRFFTQVLPKLLEGFKEADDE------------IKSNYLTALSHLLKNVPKSV--LLPELPTLLPLLLQSL 374 (415)
T ss_pred cchhhhHHhHHHHHHHHHHHHHHHhhcChh------------hHHHHHHHHHHHHhhCCHHH--HHHHHHHHHHHHHHHh
Confidence 12455677888888899887766554322 11122334555555444222 111 134556666777
Q ss_pred ccCCcchhHHHHHHHHHHhcCChhHHHHHH
Q psy10039 227 KSCHTFLVLSSLRFMRKIIAMKDDFYNRYI 256 (450)
Q Consensus 227 ~~~~K~L~L~AlRf~R~iI~l~Defy~ryi 256 (450)
...+.-++.+++..+..++.-+.+....|+
T Consensus 375 ~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 375 SLPDADVLLSSLETLKMILEEAPELISEHL 404 (415)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 888888999999999999987777666654
No 11
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.07 E-value=12 Score=35.51 Aligned_cols=193 Identities=15% Similarity=0.163 Sum_probs=108.9
Q ss_pred HHHHHhh--cCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHH
Q psy10039 4 KDLLHLL--MEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFII 81 (450)
Q Consensus 4 ~eLF~~l--~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~ii 81 (450)
+++.+.| +.++.+=++|.+++.-|+.++.-. .-......++..|- .++..|.-.+.+....+-..|+..+..+.
T Consensus 6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~ 81 (228)
T PF12348_consen 6 EEILAALEKKESESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLA 81 (228)
T ss_dssp GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3445555 667778899999999999999876 11223444444444 77788888888888889999999999988
Q ss_pred hhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHh
Q psy10039 82 EFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYK 161 (450)
Q Consensus 82 e~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~ 161 (450)
.+-..-+..++ ..++..|++.+-. +.. -++....++|..+...-++.
T Consensus 82 ~~l~~~~~~~~-------------~~~l~~Ll~~~~~-~~~--~i~~~a~~~L~~i~~~~~~~----------------- 128 (228)
T PF12348_consen 82 RQLGSHFEPYA-------------DILLPPLLKKLGD-SKK--FIREAANNALDAIIESCSYS----------------- 128 (228)
T ss_dssp HHHGGGGHHHH-------------HHHHHHHHHGGG----H--HHHHHHHHHHHHHHTTS-H------------------
T ss_pred HHHhHhHHHHH-------------HHHHHHHHHHHcc-ccH--HHHHHHHHHHHHHHHHCCcH-----------------
Confidence 77555444441 2345555554433 222 45677777888877642211
Q ss_pred hhHHHh-ccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhcc---chhhhhhhhhhHHHHHHHhhccCCcchhHHH
Q psy10039 162 YSIHLL-MDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHS---YHIKNFVLNKDLLRKVLVLMKSCHTFLVLSS 237 (450)
Q Consensus 162 ~~~~~L-~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~---~riK~fil~~~ll~rVl~Ll~~~~K~L~L~A 237 (450)
+.+ +..+...... ..+.+-...+++|.-+++.++ -.+.....-..+..-+.+++.-...-+|-+|
T Consensus 129 ---~~~~~~~l~~~~~~--------Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~A 197 (228)
T PF12348_consen 129 ---PKILLEILSQGLKS--------KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAA 197 (228)
T ss_dssp ----HHHHHHHHHHTT---------S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHH
T ss_pred ---HHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHH
Confidence 111 1111111111 123455567888888988888 3333333336677888889999999999999
Q ss_pred HHHHHHH
Q psy10039 238 LRFMRKI 244 (450)
Q Consensus 238 lRf~R~i 244 (450)
-++|..+
T Consensus 198 r~~~~~l 204 (228)
T PF12348_consen 198 RECLWAL 204 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888775
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=89.94 E-value=14 Score=39.31 Aligned_cols=225 Identities=18% Similarity=0.261 Sum_probs=109.3
Q ss_pred HHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhCh
Q psy10039 6 LLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSP 85 (450)
Q Consensus 6 LF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp 85 (450)
+-..+.++++ -=||.++.-+..++....++ +..++++.+...|.+.|+.++.+|+-.+..| .++|
T Consensus 119 v~~ll~~~~~--~VRk~A~~~l~~i~~~~p~~------------~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~ 183 (526)
T PF01602_consen 119 VIKLLSDPSP--YVRKKAALALLKIYRKDPDL------------VEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCND 183 (526)
T ss_dssp HHHHHHSSSH--HHHHHHHHHHHHHHHHCHCC------------HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH
T ss_pred HHHHhcCCch--HHHHHHHHHHHHHhccCHHH------------HHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCc
Confidence 3444454443 55777777777777664332 3223578899999999999999999888888 5555
Q ss_pred hHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhH--HHHHHHHHh--
Q psy10039 86 SFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEK--CEFLNYFYK-- 161 (450)
Q Consensus 86 ~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~--~~fl~~FY~-- 161 (450)
...-..+ ..++..|.+. +.+.+| =++..++.+|+.+...+ .... ..+++....
T Consensus 184 ~~~~~~~-------------~~~~~~L~~~-l~~~~~--~~q~~il~~l~~~~~~~-------~~~~~~~~~i~~l~~~l 240 (526)
T PF01602_consen 184 DSYKSLI-------------PKLIRILCQL-LSDPDP--WLQIKILRLLRRYAPME-------PEDADKNRIIEPLLNLL 240 (526)
T ss_dssp HHHTTHH-------------HHHHHHHHHH-HTCCSH--HHHHHHHHHHTTSTSSS-------HHHHHHHHHHHHHHHHH
T ss_pred chhhhhH-------------HHHHHHhhhc-ccccch--HHHHHHHHHHHhcccCC-------hhhhhHHHHHHHHHHHh
Confidence 4411110 1122222222 255565 23666666666544221 1111 122222211
Q ss_pred --hhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHH
Q psy10039 162 --YSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLR 239 (450)
Q Consensus 162 --~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlR 239 (450)
.....++.-.-... .. .....++..++..|.-++.+...-+|+.++ ..+..+.......+.-..++
T Consensus 241 ~s~~~~V~~e~~~~i~---~l----~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L-----~~L~~l~~~~~~~v~~~~~~ 308 (526)
T PF01602_consen 241 QSSSPSVVYEAIRLII---KL----SPSPELLQKAINPLIKLLSSSDPNVRYIAL-----DSLSQLAQSNPPAVFNQSLI 308 (526)
T ss_dssp HHHHHHHHHHHHHHHH---HH----SSSHHHHHHHHHHHHHHHTSSSHHHHHHHH-----HHHHHHCCHCHHHHGTHHHH
T ss_pred hccccHHHHHHHHHHH---Hh----hcchHHHHhhHHHHHHHhhcccchhehhHH-----HHHHHhhcccchhhhhhhhh
Confidence 11111111110000 00 011225566666666666655555676554 33444444443333333333
Q ss_pred HHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHH
Q psy10039 240 FMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIK 291 (450)
Q Consensus 240 f~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir 291 (450)
++ ++...|+.+.|... ++++..-.+..|.-. -+-||.+|++
T Consensus 309 ~~--~l~~~~d~~Ir~~~--------l~lL~~l~~~~n~~~-Il~eL~~~l~ 349 (526)
T PF01602_consen 309 LF--FLLYDDDPSIRKKA--------LDLLYKLANESNVKE-ILDELLKYLS 349 (526)
T ss_dssp HH--HHHCSSSHHHHHHH--------HHHHHHH--HHHHHH-HHHHHHHHHH
T ss_pred hh--eecCCCChhHHHHH--------HHHHhhcccccchhh-HHHHHHHHHH
Confidence 32 44445555554432 455555555555433 6778888884
No 13
>KOG1062|consensus
Probab=87.14 E-value=27 Score=40.23 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHH
Q psy10039 52 LGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLM 131 (450)
Q Consensus 52 ~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~ 131 (450)
+.|.+-++-.|++.++.||..|+=-.+-+|--.|+++-.|+..-. -+++|+++ |+-.--.
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~------------------~lL~ek~h--GVL~~~l 200 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFR------------------KLLCEKHH--GVLIAGL 200 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHH------------------HHHhhcCC--ceeeeHH
Confidence 456667777777788888877777777777777777766655433 34666776 5533222
Q ss_pred HHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCccccccc---chHHHHHHHHHHHHHHHhhcc
Q psy10039 132 SILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSY---HNAQLLGVILELLSFCVEHHS 206 (450)
Q Consensus 132 eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~---~~~~ll~~l~eLL~Fcv~~H~ 206 (450)
..+-.++-- ..+=++ .|+.+++-|+.-|...+...-...-++ .++.|...|+-||.-.-+.+.
T Consensus 201 ~l~~e~c~~-----------~~~~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 201 HLITELCKI-----------SPDALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred HHHHHHHhc-----------CHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 222222210 011223 344577888877766554432222122 345565556655555544443
No 14
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.94 E-value=37 Score=34.33 Aligned_cols=209 Identities=17% Similarity=0.197 Sum_probs=113.5
Q ss_pred cchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCC---CHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHH
Q psy10039 15 TNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLG---ILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDY 91 (450)
Q Consensus 15 ~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~G---L~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~ 91 (450)
..++-.+-.+-+|-++|.-.+ .+..+|..+.... .+..+=-.+.++|..+...|.=+|..++-+++..-...
T Consensus 69 ~~~d~v~yvL~li~dll~~~~-----~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~ 143 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDP-----SRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL 143 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SS-----SSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH
T ss_pred CcHHHHHHHHHHHHHHHhcCH-----HHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch
Confidence 445556666666777776644 5778888877522 56666668889999999999999999999988765543
Q ss_pred HHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHH-hhhHHHhccc
Q psy10039 92 TLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFY-KYSIHLLMDP 170 (450)
Q Consensus 92 ~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY-~~~~~~L~~P 170 (450)
. ++. =..+++.|.+++-. .+ -++..-.+.+|..||-. .+|=..|. .+.++.|+.
T Consensus 144 ~-~~~--------l~~ll~~L~~~l~~-~~--~~~~~~av~~L~~LL~~------------~~~R~~f~~~~~v~~l~~- 198 (312)
T PF03224_consen 144 V-KEA--------LPKLLQWLSSQLSS-SD--SELQYIAVQCLQNLLRS------------KEYRQVFWKSNGVSPLFD- 198 (312)
T ss_dssp H-HHH--------HHHHHHHHH-TT-H-HH--H---HHHHHHHHHHHTS------------HHHHHHHHTHHHHHHHHH-
T ss_pred H-HHH--------HHHHHHHHHHhhcC-CC--cchHHHHHHHHHHHhCc------------chhHHHHHhcCcHHHHHH-
Confidence 2 111 13456666653322 12 24455567788888843 22333444 334555544
Q ss_pred cccCCCCCcccccccchHHHHHH---HHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhc--cCCcchhHHHHHHHHHHh
Q psy10039 171 LLDNTKKDEVQVDSYHNAQLLGV---ILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMK--SCHTFLVLSSLRFMRKII 245 (450)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~ll~~---l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~--~~~K~L~L~AlRf~R~iI 245 (450)
++...... .+....++.-+ .+=+|||.- .+-..+..++++..++.+++ .|+|.+|+ ++-.+|+|+
T Consensus 199 iL~~~~~~----~~~~~~Ql~Y~~ll~lWlLSF~~-----~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv-~la~l~Nl~ 268 (312)
T PF03224_consen 199 ILRKQATN----SNSSGIQLQYQALLCLWLLSFEP-----EIAEELNKKYLIPLLADILKDSIKEKVVRV-SLAILRNLL 268 (312)
T ss_dssp HHH-------------HHHHHHHHHHHHHHHTTSH-----HHHHHHHTTSHHHHHHHHHHH--SHHHHHH-HHHHHHHTT
T ss_pred HHHhhccc----CCCCchhHHHHHHHHHHHHhcCH-----HHHHHHhccchHHHHHHHHHhcccchHHHH-HHHHHHHHH
Confidence 33211100 11223333222 222334421 12223455557777777765 67887776 577889999
Q ss_pred cCChhHHHHHHHhhCchH
Q psy10039 246 AMKDDFYNRYIIKGHLFQ 263 (450)
Q Consensus 246 ~l~Defy~ryiik~nLf~ 263 (450)
.-..+.+..-|+.+++..
T Consensus 269 ~~~~~~~~~~mv~~~~l~ 286 (312)
T PF03224_consen 269 SKAPKSNIELMVLCGLLK 286 (312)
T ss_dssp SSSSTTHHHHHHHH-HHH
T ss_pred hccHHHHHHHHHHccHHH
Confidence 988877777777777654
No 15
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=85.22 E-value=51 Score=34.32 Aligned_cols=176 Identities=16% Similarity=0.311 Sum_probs=101.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhH----HHHHHHHhhhhcccCCCcccHHHHHHHHhhc
Q psy10039 43 ENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSF----IRDYTLQQAACISREEQDPMLVNVIIEQMVS 118 (450)
Q Consensus 43 ~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~l----vR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~ 118 (450)
.+++..+.++|++..+-..|..=+-..|.-++.|+..++-+.+.. ...|+.++. +-++.+|+++-=
T Consensus 66 ~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~---------peil~~L~~gy~- 135 (335)
T PF08569_consen 66 AQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHR---------PEILDILLRGYE- 135 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT-----------THHHHHHHHGGG-
T ss_pred HHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCC---------HHHHHHHHHHhc-
Confidence 688999999999999999999999999999999999999985433 466776652 122333333221
Q ss_pred CCCcchhHHHHHH--------HHHHHhcCCCCCCc------------------------cCCchhHHHHHHHHHhhhHHH
Q psy10039 119 DTDPELGRAVQLM--------SILKILIDPDNMLS------------------------SINKTEKCEFLNYFYKYSIHL 166 (450)
Q Consensus 119 d~d~~LG~~~Ql~--------eaLk~LLDp~~m~~------------------------~~~~~e~~~fl~~FY~~~~~~ 166 (450)
+|++++.+-.+ .+.|.+|.++..-. +.++.--.+||..-|+....
T Consensus 136 --~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~- 212 (335)
T PF08569_consen 136 --NPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQ- 212 (335)
T ss_dssp --STTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHH-
T ss_pred --CccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-
Confidence 22222211100 12333443321110 11333346888888887766
Q ss_pred hccccccCCCCCcccccccc-hHHHHHHHHHHHHHHHhhccch-hhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHH
Q psy10039 167 LMDPLLDNTKKDEVQVDSYH-NAQLLGVILELLSFCVEHHSYH-IKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMR 242 (450)
Q Consensus 167 L~~PL~~~~~~~~~~~~~~~-~~~ll~~l~eLL~Fcv~~H~~r-iK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R 242 (450)
.+.-|+... +|. ..+-+-.|-||| ...|-+. +..||=+.+-+.-+..||+++.|.++.-|.-.||
T Consensus 213 ~~~~Ll~s~--------NYvtkrqslkLL~ell---ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFK 279 (335)
T PF08569_consen 213 KYNKLLESS--------NYVTKRQSLKLLGELL---LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFK 279 (335)
T ss_dssp HHHHHCT-S--------SHHHHHHHHHHHHHHH---HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHccCC--------CeEeehhhHHHHHHHH---HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 333444431 243 233333333433 3334344 3668999999999999999999999999976554
No 16
>KOG0166|consensus
Probab=82.44 E-value=85 Score=34.71 Aligned_cols=202 Identities=18% Similarity=0.195 Sum_probs=126.1
Q ss_pred HHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchh
Q psy10039 46 YKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELG 125 (450)
Q Consensus 46 f~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG 125 (450)
.+..++.|-++++-..+.+++..++.-|+=.|-.|.- |....|.|+++..- =.+|+ .++ ...++ +.
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIag-ds~~~Rd~vl~~g~-------l~pLl----~~l-~~~~~-~~ 210 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAG-DSPDCRDYVLSCGA-------LDPLL----RLL-NKSDK-LS 210 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcccc-CChHHHHHHHhhcc-------hHHHH----HHh-ccccc-hH
Confidence 4455778888888888888888887766666655554 44556888877643 12222 222 22333 45
Q ss_pred HHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhc
Q psy10039 126 RAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHH 205 (450)
Q Consensus 126 ~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H 205 (450)
..-+++=+|.-|.--.+..+ .-..- ..+.+.|+.=|. ..++.++...|=.|++.+-+-
T Consensus 211 ~lRn~tW~LsNlcrgk~P~P--~~~~v--------~~iLp~L~~ll~------------~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 211 MLRNATWTLSNLCRGKNPSP--PFDVV--------APILPALLRLLH------------STDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHHHHHHHHHHHcCCCCCC--cHHHH--------HHHHHHHHHHHh------------cCCHHHHHHHHHHHHHHhcCC
Confidence 66777777777765433111 00000 112233322221 234566677777778777665
Q ss_pred cchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHH
Q psy10039 206 SYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLE 285 (450)
Q Consensus 206 ~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LE 285 (450)
.=.|. .++.-+++.|+..||....--++..|||-+=+ |...++.-..-+|..+++ |++..+..+.+..+.--.||-=
T Consensus 269 ne~iq-~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN-IvtG~d~QTq~vi~~~~L-~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 269 NEKIQ-MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN-IVTGSDEQTQVVINSGAL-PVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred hHHHH-HHHHccchHHHHHHHcCCCcccccHHHhhccc-eeeccHHHHHHHHhcChH-HHHHHHhccCcchhHHHHHHHH
Confidence 55555 68899999999999888877788999999999 455777777888888877 4555555555666555555543
Q ss_pred H
Q psy10039 286 L 286 (450)
Q Consensus 286 l 286 (450)
+
T Consensus 346 i 346 (514)
T KOG0166|consen 346 I 346 (514)
T ss_pred H
Confidence 3
No 17
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=80.78 E-value=6.3 Score=32.41 Aligned_cols=74 Identities=9% Similarity=0.124 Sum_probs=55.3
Q ss_pred hhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHH
Q psy10039 213 VLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEY 289 (450)
Q Consensus 213 il~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~ 289 (450)
+.+.+++..+..++...+..++..|++++.++... ++-+...+++.+.+.++++++... ...+...|+-=|-.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l 76 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNL 76 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 34677888999999988888999999999997665 455666788899999999988752 344555444444433
No 18
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=79.97 E-value=68 Score=32.92 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHH-hcCCCCCCcc
Q psy10039 68 ATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKI-LIDPDNMLSS 146 (450)
Q Consensus 68 ~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~-LLDp~~m~~~ 146 (450)
.+|...++.+++++.+-+..+|.-++.+. .++..+.+.|-.|.. .+-.++.+.|+. +|..+...
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~----------~~~~~l~k~l~~D~~---~~v~~iL~~l~~~Vl~~~~v~-- 193 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQK----------KLMSALFKGLRKDPP---ETVILILETLKDKVLKDSSVS-- 193 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcC----------chHHHHHhcccCCCH---HHHHHHHHHHHHHhccCCCCC--
Confidence 99999999999999997777777777763 238888899888643 668888888873 44332321
Q ss_pred CCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhcc--------------------
Q psy10039 147 INKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHS-------------------- 206 (450)
Q Consensus 147 ~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~-------------------- 206 (450)
+..| ..+|=+.++.+|.+ |....... ....-+.+.-+++-.+|. -..|.
T Consensus 194 --r~~K---~~~fn~~~L~~l~~-Ly~~~~~~----~~~~~~~~vh~fL~~lcT-~p~~Gv~f~d~~~~~~~~~~~~~~~ 262 (330)
T PF11707_consen 194 --RSTK---CKLFNEWTLSQLAS-LYSRDGED----EKSSVADLVHEFLLALCT-DPKHGVCFPDNGWYPRESDSGVPVT 262 (330)
T ss_pred --hhhh---hhhcCHHHHHHHHH-HhcccCCc----ccchHHHHHHHHHHHHhc-CCCcccccCCCCcCcCccccccccc
Confidence 2233 33344556666655 44433220 001112222222222221 12221
Q ss_pred chhhhhhhhhhHHHHHHHhhccCCcchh-HHHHHHHHHHh
Q psy10039 207 YHIKNFVLNKDLLRKVLVLMKSCHTFLV-LSSLRFMRKII 245 (450)
Q Consensus 207 ~riK~fil~~~ll~rVl~Ll~~~~K~L~-L~AlRf~R~iI 245 (450)
...+.+=..|.++-++++.+++.+-..+ =.+++.+++|=
T Consensus 263 ~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~Lvl~Il~~~P 302 (330)
T PF11707_consen 263 INNKSFKINNKLLLNLLKKLKPWEDDRQQELVLKILKACP 302 (330)
T ss_pred ccCCCCCcccHHHHHHHHHCCCCccHHHHHHHHHHHHHCh
Confidence 1225566778889999998887765422 23677777764
No 19
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=79.74 E-value=2.8 Score=27.90 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=25.8
Q ss_pred CHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 54 ILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 54 L~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
|++.+--.++++++.||.+|+.-|..|.+|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467888899999999999999999998875
No 20
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=79.53 E-value=40 Score=30.79 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=47.0
Q ss_pred HHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcch
Q psy10039 45 FYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPEL 124 (450)
Q Consensus 45 ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~L 124 (450)
-|..+++..+.+.+--.+.++++.+-..+.-|+..++.+ .|.++..|- ..++..++..++....+..
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~----~~~~Lk~el---------e~~l~~i~~~il~~~~~~~ 131 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR----FRSHLKLEL---------EVFLSHIILRILESDNSSL 131 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHH---------HHHHHHHHHHHHccCCCcH
Confidence 344555555666555556566666767777777777743 566655554 3556666664444333212
Q ss_pred hHHHHHHHHHHHhcC
Q psy10039 125 GRAVQLMSILKILID 139 (450)
Q Consensus 125 G~~~Ql~eaLk~LLD 139 (450)
--|.-+.|+++.+.-
T Consensus 132 ~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 132 WQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHh
Confidence 234556677777764
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=77.88 E-value=2.2e+02 Score=36.78 Aligned_cols=255 Identities=10% Similarity=0.075 Sum_probs=153.1
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHH--hCCCHHHHHHHHhCCChhhHHHHHHHHHHHH
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLS--SLGILPALEVVLSAEDIATKNAAIDILNFII 81 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv--~~GL~~vi~~~L~~~d~~ir~~atdIL~~ii 81 (450)
..|-..|++...+.+-|++++.-|.+ ++|. ....|.++ ..|.++.+-..|++++..+|..++-+|..+-
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~---Lak~------~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS 86 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLE---LAKT------REEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLC 86 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHH---HHhc------ChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45667777776666667777544444 4443 12334444 4899999999999999999999998888887
Q ss_pred hhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHH-HHHHHH
Q psy10039 82 EFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCE-FLNYFY 160 (450)
Q Consensus 82 e~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~-fl~~FY 160 (450)
.|+ -.|.-+..... +..|++.| .+.++ ..|...+.+|..|--...... .+.. +. .
T Consensus 87 ~~e--~nk~~Iv~~Ga-----------IppLV~LL-~sGs~--eaKe~AA~AL~sLS~~~~~D~-----~~~~I~v---~ 142 (2102)
T PLN03200 87 KEE--DLRVKVLLGGC-----------IPPLLSLL-KSGSA--EAQKAAAEAIYAVSSGGLSDH-----VGSKIFS---T 142 (2102)
T ss_pred cCH--HHHHHHHHcCC-----------hHHHHHHH-HCCCH--HHHHHHHHHHHHHHcCcchhh-----hhhhhhh---h
Confidence 663 34444554322 33355544 44454 568888888888863210000 0000 00 1
Q ss_pred hhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHH
Q psy10039 161 KYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRF 240 (450)
Q Consensus 161 ~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf 240 (450)
..+++.|+.-|-+.. .++..+-.+.+=.|.-...++..+.+ .++..+.+..++.++.+.+.-++.-|...
T Consensus 143 ~GaVp~Lv~lL~~gs---------k~d~~L~~~Av~AL~nLs~~~en~~~-~IIeaGaVp~LV~LLsS~d~~lQ~eAa~a 212 (2102)
T PLN03200 143 EGVVPSLWDQLQPGN---------KQDKVVEGLLTGALRNLCGSTDGFWS-ATLEAGGVDILVKLLSSGNSDAQANAASL 212 (2102)
T ss_pred cCChHHHHHHHhCCc---------hhhHHHHHHHHHHHHHHhcCccchHH-HHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 334555554443321 12333444455555554556665545 57889999999999998887788888886
Q ss_pred HHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHH----------HHHHHHHHhh-ChHHHHHHHH
Q psy10039 241 MRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAV----------LELFEYIKLE-DIKVLCSHVV 303 (450)
Q Consensus 241 ~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~----------LElfe~Ir~e-Nik~Li~hlv 303 (450)
+-.+..-..+ ...-+++.|...+++.++.+..+ ..+=-.|+ -|.=+.|... .+..|+..++
T Consensus 213 La~Lass~ee-~~~aVIeaGaVP~LV~LL~sg~~-~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~ 284 (2102)
T PLN03200 213 LARLMMAFES-SISKVLDAGAVKQLLKLLGQGNE-VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATV 284 (2102)
T ss_pred HHHHHcCChH-HHHHHHHCCCHHHHHHHHccCCC-hHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 6544333233 68889999999999997754222 12222222 2344444443 3666777665
No 22
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=76.54 E-value=93 Score=32.81 Aligned_cols=123 Identities=16% Similarity=0.354 Sum_probs=84.1
Q ss_pred CCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHH
Q psy10039 13 ENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYT 92 (450)
Q Consensus 13 ~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~ 92 (450)
+...+..|-.+++|++.|+.+-+..+. +..|+...|--+..+++...|.++.++|+-+.=.||.++-.-
T Consensus 78 ~~~~~~ER~QALkliR~~l~~~~~~~~----------~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~- 146 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFLEIKKGPKE----------IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAEC- 146 (371)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCccc----------CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHc-
Confidence 344577899999999999999554321 355666666666666888999999999999999999997331
Q ss_pred HHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccc
Q psy10039 93 LQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLL 172 (450)
Q Consensus 93 ~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~ 172 (450)
.+ +..|++.++. .. ..+...+..++--|||.+. .-.|+..-|+ +..|++|+.
T Consensus 147 ----------gG----~~~L~~~l~d-~~--~~~~~~l~~~lL~lLd~p~---------tR~yl~~~~d--L~~l~apft 198 (371)
T PF14664_consen 147 ----------GG----IRVLLRALID-GS--FSISESLLDTLLYLLDSPR---------TRKYLRPGFD--LESLLAPFT 198 (371)
T ss_pred ----------CC----HHHHHHHHHh-cc--HhHHHHHHHHHHHHhCCcc---------hhhhhcCCcc--HHHHHHhhh
Confidence 11 3444554444 22 2357778888888998643 1223333332 678888887
Q ss_pred cC
Q psy10039 173 DN 174 (450)
Q Consensus 173 ~~ 174 (450)
+.
T Consensus 199 d~ 200 (371)
T PF14664_consen 199 DF 200 (371)
T ss_pred hh
Confidence 76
No 23
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=75.60 E-value=76 Score=30.24 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhC-------CCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHH
Q psy10039 20 RRDLALFLREYCQFSQNLQPQAKENFYKTLSSL-------GILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYT 92 (450)
Q Consensus 20 rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~-------GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~ 92 (450)
|..++..|+.+|. +..+..=...+..|.=. .=-..+.-++.++++++|.+|+-.|.+|++.. +.|+
T Consensus 3 R~~Al~~L~al~k---~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs----k~~L 75 (182)
T PF13251_consen 3 RQAALQCLQALAK---STDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS----KPFL 75 (182)
T ss_pred hHHHHHHHHHHHH---hcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc----HHHH
Confidence 5556666665554 33332223334444322 23456777888999999999999999999995 5555
Q ss_pred HHhh
Q psy10039 93 LQQA 96 (450)
Q Consensus 93 ~~q~ 96 (450)
...+
T Consensus 76 ~~Ae 79 (182)
T PF13251_consen 76 AQAE 79 (182)
T ss_pred HHHH
Confidence 5443
No 24
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=73.08 E-value=94 Score=31.03 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=57.7
Q ss_pred HHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHH
Q psy10039 218 LLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYI 290 (450)
Q Consensus 218 ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~I 290 (450)
.+..++.|+.+...-.+.-|+|.+=++=. +.-..++|+.......++.+|..+.++.||++ +|-+|+-|
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~--~l~~~~ni 203 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLSE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLR--VLTFFENI 203 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhcc--CHHHHHHHHhccchhHHHHHHccCCccHHHHH--HHHHHHHH
Confidence 35567888888888899999998766544 55668999999999999999999999999985 78888877
No 25
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=72.86 E-value=36 Score=37.07 Aligned_cols=140 Identities=18% Similarity=0.235 Sum_probs=88.5
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCch-----hHHHHHHHHHhCCCHH-HHHHHHhCCChhhHHHHHHHH
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQ-----AKENFYKTLSSLGILP-ALEVVLSAEDIATKNAAIDIL 77 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~-----~r~~ff~~Lv~~GL~~-vi~~~L~~~d~~ir~~atdIL 77 (450)
..|.+.|. |+.+.+....+-.||++++.+|.+-+.. .-..|-+.|++.-.+. .+.++|.......-+.|+-|+
T Consensus 65 ~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~Il 143 (475)
T PF04499_consen 65 PRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSIL 143 (475)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 45666676 7778889999999999999999875432 2378899999876655 778889644477888999999
Q ss_pred HHHHhhChhHHHHHHHHhhhhcccCCCcccH----H-------HHHHHHhhcC-------------CCcchhH-HHHHHH
Q psy10039 78 NFIIEFSPSFIRDYTLQQAACISREEQDPML----V-------NVIIEQMVSD-------------TDPELGR-AVQLMS 132 (450)
Q Consensus 78 ~~iie~dp~lvR~~~~~q~~~~s~~e~~~~L----l-------~~Li~~ll~d-------------~d~~LG~-~~Ql~e 132 (450)
+.+|....+---.............+.+..- + .-+.++|... ..| ||- +-+++|
T Consensus 144 ieLIRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~G~l~~P-LG~~RlkI~E 222 (475)
T PF04499_consen 144 IELIRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTFGVLIPP-LGFERLKICE 222 (475)
T ss_pred HHHHHhcccccchhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCCCCCCCC-cchHHHHHHH
Confidence 9999654322111000000000011112211 1 1123333333 223 676 888999
Q ss_pred HHHHhcCCCCCCc
Q psy10039 133 ILKILIDPDNMLS 145 (450)
Q Consensus 133 aLk~LLDp~~m~~ 145 (450)
.+-.||.-.||.-
T Consensus 223 LiAeLLhcsNm~L 235 (475)
T PF04499_consen 223 LIAELLHCSNMSL 235 (475)
T ss_pred HHHHHHhCCCccc
Confidence 9999999998853
No 26
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=70.56 E-value=1.3e+02 Score=30.81 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=66.8
Q ss_pred CCcchHhhHHHHHHHHHHHHhh--hcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh----Chh
Q psy10039 13 ENTNELRRRDLALFLREYCQFS--QNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF----SPS 86 (450)
Q Consensus 13 ~~~~~~~rrd~v~FL~q~c~la--K~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~----dp~ 86 (450)
-+.-++-|.....||+.++.-. .-++.+ ..-|+. +++.|.||++|++..|-..|.++|..+++. ++.
T Consensus 130 ~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 130 FEEYPEHRVNFFKLLRAINEHCFPALLQLP--PEQFKL-----VIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHTHHHHHS---HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred hhhChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3445688888888888887753 211211 122333 357899999999999999999999999885 344
Q ss_pred HHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc
Q psy10039 87 FIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILI 138 (450)
Q Consensus 87 lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LL 138 (450)
...++. ++-- ..++.-+... ++|++.--|.+.|. .+|+.|+
T Consensus 203 ~~~~F~-~~y~--------~~il~~if~v-ltD~~Hk~gf~~q~-~iL~~Lf 243 (319)
T PF08767_consen 203 FANQFY-QQYY--------LDILQDIFSV-LTDSDHKSGFKLQS-QILSNLF 243 (319)
T ss_dssp HHHHHH-HHHH--------HHHHHHHHHH-HHSTT-GGGHHHHH-HHHHHHH
T ss_pred HHHHHH-HHHH--------HHHHHHHHHH-HHCcccHHHHHHHH-HHHHHHH
Confidence 444432 2221 2233333333 57776655666665 6667666
No 27
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=69.22 E-value=10 Score=39.44 Aligned_cols=78 Identities=12% Similarity=0.246 Sum_probs=61.9
Q ss_pred hhhhhhhHHHHHHHhhccCCcc-hhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHH-hhhcCCC--CcchhhHHHHH
Q psy10039 211 NFVLNKDLLRKVLVLMKSCHTF-LVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDT-FNRNKGR--YNLLDSAVLEL 286 (450)
Q Consensus 211 ~fil~~~ll~rVl~Ll~~~~K~-L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~-f~~n~~R--~NLlnSA~LEl 286 (450)
.|+++++|+.++..+-...... .+..++||+.++|+.-++= .+...++..||+.+ +..-+.. ..-......+|
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p---lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP---LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc---cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 4899999999999997775554 9999999999999987765 56677999999999 7665554 56666667777
Q ss_pred HHHHH
Q psy10039 287 FEYIK 291 (450)
Q Consensus 287 fe~Ir 291 (450)
+.-|-
T Consensus 80 L~~lc 84 (353)
T PF10257_consen 80 LNTLC 84 (353)
T ss_pred HHHHH
Confidence 66663
No 28
>KOG1293|consensus
Probab=69.20 E-value=45 Score=37.69 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=80.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHH
Q psy10039 185 YHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQP 264 (450)
Q Consensus 185 ~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~P 264 (450)
..+...++-||-|+ ++--++ |.+++++|.+.++..++..+.--++-.+++++|..+-.-|+-..-..-+ .++.-
T Consensus 434 ~i~~~~lgai~NlV---mefs~~--kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~-ki~a~ 507 (678)
T KOG1293|consen 434 MIMGITLGAICNLV---MEFSNL--KSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLA-KIPAN 507 (678)
T ss_pred hHHHHHHHHHHHHH---hhcccH--HHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHH-HhhHH
Confidence 44556677776653 222234 6679999999999999999998899999999999998877755433322 34444
Q ss_pred HHHHhhhcCCCCcchhhHHHHHHHHHHhhChHHHHHHHHHHhHhhccCc
Q psy10039 265 VIDTFNRNKGRYNLLDSAVLELFEYIKLEDIKVLCSHVVETYGDELESI 313 (450)
Q Consensus 265 Il~~f~~n~~R~NLlnSA~LElfe~Ir~eNik~Li~hlve~y~~~l~~i 313 (450)
.+..|..+.+ =-+---|+-|+.-. ..|-+..+.||+++|++.+.++
T Consensus 508 ~i~~l~nd~d--~~Vqeq~fqllRNl-~c~~~~svdfll~~~~~~ld~i 553 (678)
T KOG1293|consen 508 LILDLINDPD--WAVQEQCFQLLRNL-TCNSRKSVDFLLEKFKDVLDKI 553 (678)
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHHh-hcCcHHHHHHHHHhhhHHHHHH
Confidence 4444444432 22333343333322 3577788999999999988766
No 29
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=68.91 E-value=65 Score=35.29 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHhCCCHHHHHHHH---h-CC--ChhhHHHHHHHHHHHHhhChhHHHHHH
Q psy10039 20 RRDLALFLREYCQFSQNLQ-PQAKENFYKTLSSLGILPALEVVL---S-AE--DIATKNAAIDILNFIIEFSPSFIRDYT 92 (450)
Q Consensus 20 rrd~v~FL~q~c~laK~LQ-~~~r~~ff~~Lv~~GL~~vi~~~L---~-~~--d~~ir~~atdIL~~iie~dp~lvR~~~ 92 (450)
..+.+.+|++.+.-+++=+ ...+..+.++|.+-|.-.++.... . .. ...+|.+|+--|-.+.+++|..+|..+
T Consensus 440 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 440 LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 3567777777777665322 334566779999999988766543 2 22 356999999999999999999999988
Q ss_pred HHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q psy10039 93 LQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKI 136 (450)
Q Consensus 93 ~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~ 136 (450)
++-.. +...+.- +-+..=.++-..+|..++-.++++.+..
T Consensus 520 ~~i~~---n~~e~~E-vRiaA~~~lm~t~P~~~~l~~ia~~l~~ 559 (574)
T smart00638 520 LPIYL---NRAEPPE-VRMAAVLVLMETKPSVALLQRIAELLNK 559 (574)
T ss_pred HHHHc---CCCCChH-HHHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 87654 2111111 2222222333345656666666666554
No 30
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=68.49 E-value=92 Score=28.84 Aligned_cols=31 Identities=23% Similarity=0.148 Sum_probs=14.0
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHHHhhChhH
Q psy10039 57 ALEVVLSAEDIATKNAAIDILNFIIEFSPSF 87 (450)
Q Consensus 57 vi~~~L~~~d~~ir~~atdIL~~iie~dp~l 87 (450)
-+.-.|+++++.||..|.=+|..++..|.--
T Consensus 29 ~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik 59 (178)
T PF12717_consen 29 NLYKCLRDEDPLVRKTALLVLSHLILEDMIK 59 (178)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHcCcee
Confidence 3444444444444444444444444443333
No 31
>PRK09687 putative lyase; Provisional
Probab=67.22 E-value=1.4e+02 Score=29.95 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHhCC---CHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHH
Q psy10039 39 PQAKENFYKTLSSLG---ILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQ 115 (450)
Q Consensus 39 ~~~r~~ff~~Lv~~G---L~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ 115 (450)
...|...-+.|...| ++..+.-.++++|+.+|..|+.+|..|-+.+.. + ..-+..|...
T Consensus 37 ~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-------~-----------~~a~~~L~~l 98 (280)
T PRK09687 37 SLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-------Q-----------DNVFNILNNL 98 (280)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-------h-----------HHHHHHHHHH
Confidence 445666666666655 666777778889999999999998886443221 0 1124556666
Q ss_pred hhcCCCcchhHHHHHHHHHHHhcC
Q psy10039 116 MVSDTDPELGRAVQLMSILKILID 139 (450)
Q Consensus 116 ll~d~d~~LG~~~Ql~eaLk~LLD 139 (450)
++.|.|+ .++.+.+.+|--+-.
T Consensus 99 ~~~D~d~--~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 99 ALEDKSA--CVRASAINATGHRCK 120 (280)
T ss_pred HhcCCCH--HHHHHHHHHHhcccc
Confidence 6788887 668888888877643
No 32
>KOG1248|consensus
Probab=67.20 E-value=2.9e+02 Score=33.50 Aligned_cols=58 Identities=5% Similarity=-0.004 Sum_probs=46.1
Q ss_pred hHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 17 ELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 17 ~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
.-+......+|-.+|.+|+.+.--+=.++| .+..+..++.+..++.-+-+||..++..
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~~vs~l~---------~v~~~~e~~~~~~vQkK~yrlL~~l~~~ 684 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTESQVSKLF---------TVDPEFENSSSTKVQKKAYRLLEELSSS 684 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccchhHHHHH---------HhhHHhhccccHHHHHHHHHHHHHHhcC
Confidence 345677888999999999987644444444 7888888888999999999999888877
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=64.84 E-value=32 Score=27.08 Aligned_cols=55 Identities=29% Similarity=0.313 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHH
Q psy10039 55 LPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSIL 134 (450)
Q Consensus 55 ~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaL 134 (450)
++.+.-+++++|+.||..++.-|..|= +...+..|++.|..+.+. .++....++|
T Consensus 33 ~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------------------~~~~~~~L~~~l~~~~~~--~vr~~a~~aL 87 (88)
T PF13646_consen 33 IPALIELLKDEDPMVRRAAARALGRIG-----------------------DPEAIPALIKLLQDDDDE--VVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCH-----------------------HHHTHHHHHHHHTC-SSH--HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC-----------------------CHHHHHHHHHHHcCCCcH--HHHHHHHhhc
Confidence 667777788888889888887776550 122355566666665553 6677666665
No 34
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=64.28 E-value=1.3e+02 Score=28.30 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHhhhcCCchh------HHHHHHHHHhCCCH-----------HHHHHHHhCC-ChhhHHHHHHHHHHHH
Q psy10039 20 RRDLALFLREYCQFSQNLQPQA------KENFYKTLSSLGIL-----------PALEVVLSAE-DIATKNAAIDILNFII 81 (450)
Q Consensus 20 rrd~v~FL~q~c~laK~LQ~~~------r~~ff~~Lv~~GL~-----------~vi~~~L~~~-d~~ir~~atdIL~~ii 81 (450)
+++|+..|=+.+.=++.+|+-. =.+-|..|.+||+. +++.|+=+.. |..|-..+..||-.++
T Consensus 9 ~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~V 88 (160)
T PF11841_consen 9 SRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIV 88 (160)
T ss_pred hccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHH
Confidence 4455555555555444433311 13347778888873 4666666666 8999999999999999
Q ss_pred hhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHh
Q psy10039 82 EFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYK 161 (450)
Q Consensus 82 e~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~ 161 (450)
..+|.+= +.+.++ .+ +..|+.+|.. +++ .++.-.+-.|-+|+=- ++..++.++.+.+..
T Consensus 89 l~S~~ly-~~V~~e----------vt-~~~Li~hLq~-~~~--~iq~naiaLinAL~~k------A~~~~r~~i~~~l~~ 147 (160)
T PF11841_consen 89 LNSPKLY-QLVEQE----------VT-LESLIRHLQV-SNQ--EIQTNAIALINALFLK------ADDSKRKEIAETLSQ 147 (160)
T ss_pred hCCHHHH-HHHhcc----------CC-HHHHHHHHHc-CCH--HHHHHHHHHHHHHHhc------CChHHHHHHHHHHHH
Confidence 9887752 222222 23 6667777766 566 3466677777777732 234567788888887
Q ss_pred hhH
Q psy10039 162 YSI 164 (450)
Q Consensus 162 ~~~ 164 (450)
+-+
T Consensus 148 k~~ 150 (160)
T PF11841_consen 148 KQI 150 (160)
T ss_pred HHH
Confidence 654
No 35
>KOG2734|consensus
Probab=61.96 E-value=2.5e+02 Score=30.84 Aligned_cols=226 Identities=13% Similarity=0.154 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHHHHhhhcCCc-hhHHHHHHHHHhCCCHHHHHHHHhCCChhhHH------HHHHHHHHHHhhChhHHHHH
Q psy10039 19 RRRDLALFLREYCQFSQNLQP-QAKENFYKTLSSLGILPALEVVLSAEDIATKN------AAIDILNFIIEFSPSFIRDY 91 (450)
Q Consensus 19 ~rrd~v~FL~q~c~laK~LQ~-~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~------~atdIL~~iie~dp~lvR~~ 91 (450)
--..+|.+|||+--.---=.. ..-..|+-+||+.+++..+--.+..=|.+++- ...-++..+++.+|+.....
T Consensus 141 I~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~ 220 (536)
T KOG2734|consen 141 IAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEI 220 (536)
T ss_pred hHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHH
Confidence 346788888888765221111 22348999999999999988888776666552 23334555666666654332
Q ss_pred HHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhcccc
Q psy10039 92 TLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPL 171 (450)
Q Consensus 92 ~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL 171 (450)
- + ..|+.+|.+. ++...|.=+-+.-.+|+|-+||...+-.. .-+.-. ..++.|..-|
T Consensus 221 -----~-----e--~~ll~WLL~r-l~~k~~f~aNk~YasEiLaillq~s~e~~--------~~~~~l--~GiD~lL~~l 277 (536)
T KOG2734|consen 221 -----V-----E--QGLLSWLLKR-LKGKAAFDANKQYASEILAILLQNSDENR--------KLLGPL--DGIDVLLRQL 277 (536)
T ss_pred -----H-----H--hhHHHHHHHH-HhcccCcchhHHHHHHHHHHHhccCchhh--------hhhcCc--ccHHHHHhhc
Confidence 1 1 2567777666 34443333668889999999997643100 000000 0122222211
Q ss_pred ccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCCh-h
Q psy10039 172 LDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKD-D 250 (450)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~D-e 250 (450)
-.- ....|. +....++..++-+-||-|+++-..|.| |+...++--.++.+=. .|..+=+|+|++--+..-.| .
T Consensus 278 a~y-k~~dP~--~~~E~EmmeNLFdcLCs~lm~~~nr~~-Fl~~EGlqLm~Lmlr~--Kk~sr~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 278 AVY-KRHDPA--TVDEEEMMENLFDCLCSLLMAPANRER-FLKGEGLQLMNLMLRE--KKVSRGSALKVLDHAMFGPEGT 351 (536)
T ss_pred chh-hccCCC--CcCHHHHHHHHHHHHHHHhcChhhhhh-hhccccHHHHHHHHHH--HHHhhhhHHHHHHHHHhCCCch
Confidence 110 011111 223556778888888888888777755 8888887666655433 77899999999988877544 1
Q ss_pred HHHHHHHhhCchHHHHHHhhhcC
Q psy10039 251 FYNRYIIKGHLFQPVIDTFNRNK 273 (450)
Q Consensus 251 fy~ryiik~nLf~PIl~~f~~n~ 273 (450)
=+..-++...=++.||.+|....
T Consensus 352 ~~C~kfVe~lGLrtiF~~FMk~p 374 (536)
T KOG2734|consen 352 PNCNKFVEILGLRTIFPLFMKTP 374 (536)
T ss_pred HHHHHHHHHHhHHHHHHHHhhCc
Confidence 44555677777888998888544
No 36
>KOG4224|consensus
Probab=61.32 E-value=64 Score=34.48 Aligned_cols=145 Identities=21% Similarity=0.307 Sum_probs=95.0
Q ss_pred HHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhH
Q psy10039 47 KTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGR 126 (450)
Q Consensus 47 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~ 126 (450)
+.||..|=++|+--+++..|..+|--+|--+..|- .|- .-|. ++-|. ++.|+.-|+++|=.. ++ -+
T Consensus 202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa-Vd~-~~Rk-~Laqa--------ep~lv~~Lv~Lmd~~-s~--kv 267 (550)
T KOG4224|consen 202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA-VDR-RARK-ILAQA--------EPKLVPALVDLMDDG-SD--KV 267 (550)
T ss_pred hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh-hhH-HHHH-HHHhc--------ccchHHHHHHHHhCC-Ch--HH
Confidence 56899999999999999999999877765554332 111 1122 22333 477899999877554 44 77
Q ss_pred HHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhcc
Q psy10039 127 AVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHS 206 (450)
Q Consensus 127 ~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~ 206 (450)
|+|..-|||.|---. .|+..
T Consensus 268 kcqA~lALrnlasdt------------------------------------------~Yq~e------------------ 287 (550)
T KOG4224|consen 268 KCQAGLALRNLASDT------------------------------------------EYQRE------------------ 287 (550)
T ss_pred HHHHHHHHhhhcccc------------------------------------------hhhhH------------------
Confidence 999999999875210 01110
Q ss_pred chhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHH-hcCChhHHHHHHHhhCchHHHHHHhhhcCC
Q psy10039 207 YHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKI-IAMKDDFYNRYIIKGHLFQPVIDTFNRNKG 274 (450)
Q Consensus 207 ~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~i-I~l~Defy~ryiik~nLf~PIl~~f~~n~~ 274 (450)
|.+.+-+.-.+.|+++..-.|+++.|-|+|++ |.--++ -.|+..+.++|.+.++....+
T Consensus 288 ------iv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe---~lI~dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 288 ------IVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE---VLIADAGFLRPLVRLLRAGDN 347 (550)
T ss_pred ------HHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc---cceecccchhHHHHHHhcCCc
Confidence 22233344445556666677889999999986 332222 357888999999998875433
No 37
>KOG0946|consensus
Probab=60.55 E-value=1.6e+02 Score=34.40 Aligned_cols=214 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhc
Q psy10039 20 RRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACI 99 (450)
Q Consensus 20 rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~ 99 (450)
|.|+|+||.++..=.-++| |.--|.+-..+ ||.+|+--=..+..-|..-+.=.|..++-++.+ .+-++++...+
T Consensus 183 RNe~iLlL~eL~k~n~~IQ---KlVAFENaFer-LfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S--NQ~~FrE~~~i 256 (970)
T KOG0946|consen 183 RNEAILLLSELVKDNSSIQ---KLVAFENAFER-LFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS--NQNFFREGSYI 256 (970)
T ss_pred chhHHHHHHHHHccCchHH---HHHHHHHHHHH-HHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc--hhhHHhccccH
Q ss_pred ccCCCcccHHHHHHHHhhcCCCcchhHHHH-------HHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccc
Q psy10039 100 SREEQDPMLVNVIIEQMVSDTDPELGRAVQ-------LMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLL 172 (450)
Q Consensus 100 s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Q-------l~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~ 172 (450)
+.|..+|..-...|. ...|-..| +.+++|+|..|.|-.+.++..++--+=..--......|++|-+
T Consensus 257 ------~rL~klL~~f~~~d~-Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v 329 (970)
T KOG0946|consen 257 ------PRLLKLLSVFEFGDG-EVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGV 329 (970)
T ss_pred ------HHHHhhcCcccccCc-ccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC
Q ss_pred cCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhh-----HHHHHHHhhccCCcc-hhHHHHHHHHHHhc
Q psy10039 173 DNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKD-----LLRKVLVLMKSCHTF-LVLSSLRFMRKIIA 246 (450)
Q Consensus 173 ~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~-----ll~rVl~Ll~~~~K~-L~L~AlRf~R~iI~ 246 (450)
.. -.-.....-+-+.+--|-+.--+..+--+-+.. |+--...+..+++.| +|.|.++|||+.+.
T Consensus 330 p~----------dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~ 399 (970)
T KOG0946|consen 330 PA----------DILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY 399 (970)
T ss_pred cH----------hHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh
Q ss_pred CChhHHHHHH
Q psy10039 247 MKDDFYNRYI 256 (450)
Q Consensus 247 l~Defy~ryi 256 (450)
-||+-=-+.+
T Consensus 400 dN~~gq~~~l 409 (970)
T KOG0946|consen 400 DNDDGQRKFL 409 (970)
T ss_pred cchhhHHHHH
No 38
>KOG2582|consensus
Probab=60.15 E-value=83 Score=33.49 Aligned_cols=98 Identities=22% Similarity=0.288 Sum_probs=63.6
Q ss_pred hhhhhhhhHHH-HHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHH
Q psy10039 210 KNFVLNKDLLR-KVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFE 288 (450)
Q Consensus 210 K~fil~~~ll~-rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe 288 (450)
|.|+|=.=|+. ||.+|-++..+ .|+||+|....-=-||-+-|.-..+- =|-+-|.+=-+
T Consensus 226 kkylLvsLI~~GK~~ql~k~ts~----~~~r~~K~ms~pY~ef~~~Y~~~~~~----------------eLr~lVk~~~~ 285 (422)
T KOG2582|consen 226 KKYLLVSLILTGKVFQLPKNTSQ----NAGRFFKPMSNPYHEFLNVYLKDSST----------------ELRTLVKKHSE 285 (422)
T ss_pred HHHHHHHhhhcCceeeccccchh----hhHHhcccCCchHHHHHHHHhcCCcH----------------HHHHHHHHHHH
Confidence 66766444333 34455544444 78999999987777777777644433 14444444455
Q ss_pred HHHhhChHHHHHHHHHHhHh-hccCccchhhHHHHHHHHHhh
Q psy10039 289 YIKLEDIKVLCSHVVETYGD-ELESIHYVQTFRSLRLKYNQA 329 (450)
Q Consensus 289 ~Ir~eNik~Li~hlve~y~~-~l~~i~yv~tf~~L~~ryeq~ 329 (450)
-.++.|-..|++++++.|+. .+++++ +||-.|++.|=..
T Consensus 286 rF~kDnnt~l~k~av~sl~k~nI~rlt--ktF~sLsL~dIA~ 325 (422)
T KOG2582|consen 286 RFTKDNNTGLAKQAVSSLYKKNIQRLT--KTFLSLSLSDIAS 325 (422)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHH
Confidence 55677888999999998865 445543 7888888877443
No 39
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=56.19 E-value=15 Score=24.76 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=31.1
Q ss_pred hhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHh
Q psy10039 210 KNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKII 245 (450)
Q Consensus 210 K~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI 245 (450)
|..+...+.+..+..|+.+.+.-++-.|+..+|++.
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 557788889999999999888889999999999874
No 40
>KOG2171|consensus
Probab=53.90 E-value=1.7e+02 Score=35.23 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHhhhcCCchhHHHHHHHHH---------hC----CCHHHHHHHHhCCChhhHHHHHHHHHHHHhhC-
Q psy10039 19 RRRDLALFLREYCQFSQNLQPQAKENFYKTLS---------SL----GILPALEVVLSAEDIATKNAAIDILNFIIEFS- 84 (450)
Q Consensus 19 ~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv---------~~----GL~~vi~~~L~~~d~~ir~~atdIL~~iie~d- 84 (450)
+|=|++.||.||. ++-+++-|..-|.-|. .. .|..++.-+|.++...||++|+=-+.+++.+.
T Consensus 115 ~WPell~~L~q~~---~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 115 KWPELLQFLFQST---KSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE 191 (1075)
T ss_pred chHHHHHHHHHHh---cCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc
Confidence 8999999999975 3555667776665552 23 45667778888887779999999999888764
Q ss_pred --hhHHHHH
Q psy10039 85 --PSFIRDY 91 (450)
Q Consensus 85 --p~lvR~~ 91 (450)
+..++.|
T Consensus 192 ~~~~~~~~~ 200 (1075)
T KOG2171|consen 192 NNKSEVDKF 200 (1075)
T ss_pred cchHHHHHH
Confidence 5555544
No 41
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=52.97 E-value=25 Score=24.49 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=32.0
Q ss_pred hhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHh
Q psy10039 210 KNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKII 245 (450)
Q Consensus 210 K~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI 245 (450)
|..|++.+.+..+..||++.+.-++-.|+..++++-
T Consensus 5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 556889999999999999999999999999998863
No 42
>KOG0168|consensus
Probab=52.23 E-value=4.7e+02 Score=31.05 Aligned_cols=220 Identities=15% Similarity=0.184 Sum_probs=115.7
Q ss_pred hCCCHHHHHHHHhCC-ChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHH
Q psy10039 51 SLGILPALEVVLSAE-DIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQ 129 (450)
Q Consensus 51 ~~GL~~vi~~~L~~~-d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Q 129 (450)
=.-+.+||--.|+|+ +..|-..|+=-|.++.|-=|..+--. +.+.. +-+|.+-|++=.= +-++.|
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v-V~~~a-----------IPvl~~kL~~Iey--iDvAEQ 274 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV-VDEHA-----------IPVLLEKLLTIEY--IDVAEQ 274 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee-ecccc-----------hHHHHHhhhhhhh--hHHHHH
Confidence 344567888888888 67888888888999998877654222 21111 2333333433222 467999
Q ss_pred HHHHHHHhcCCC--CCCccCCchhHHHHHHHHHhhhHHH---hccc-cccCCCCCcc----------cccccchHHHHHH
Q psy10039 130 LMSILKILIDPD--NMLSSINKTEKCEFLNYFYKYSIHL---LMDP-LLDNTKKDEV----------QVDSYHNAQLLGV 193 (450)
Q Consensus 130 l~eaLk~LLDp~--~m~~~~~~~e~~~fl~~FY~~~~~~---L~~P-L~~~~~~~~~----------~~~~~~~~~ll~~ 193 (450)
..+||+.|=--. .++......---.||+||=-+.-.+ ..+. +....+++.. ....|++......
T Consensus 275 ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies 354 (1051)
T KOG0168|consen 275 SLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIES 354 (1051)
T ss_pred HHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHH
Confidence 999999885432 2222111112235777776554111 1111 1122221110 0013444444444
Q ss_pred HHHHHHHHH--hhccchhhhhhhhhhHHHHHHHhhccCCcc----hhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHH
Q psy10039 194 ILELLSFCV--EHHSYHIKNFVLNKDLLRKVLVLMKSCHTF----LVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVID 267 (450)
Q Consensus 194 l~eLL~Fcv--~~H~~riK~fil~~~ll~rVl~Ll~~~~K~----L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~ 267 (450)
.|==+|..+ -+|.--.=.=+-+++|+.++.+|+.-.... +..+.||.++.|-+ +=-.--|-+.|.|+=.-.-.
T Consensus 355 ~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS-~~pl~~~tl~k~~I~~~L~~ 433 (1051)
T KOG0168|consen 355 VCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSS-GSPLLFRTLLKLDIADTLKR 433 (1051)
T ss_pred HHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHcc-CChHHHHHHHHhhHHHHHHH
Confidence 443333322 334333223477899999999988766554 33566777776654 22334455556665555555
Q ss_pred HhhhcCCCCcchhhHHHHHHHHHH
Q psy10039 268 TFNRNKGRYNLLDSAVLELFEYIK 291 (450)
Q Consensus 268 ~f~~n~~R~NLlnSA~LElfe~Ir 291 (450)
+|.-.+. ||+-++-|-|-
T Consensus 434 il~g~s~------s~nas~~~~l~ 451 (1051)
T KOG0168|consen 434 ILQGYSK------SANASLHELLS 451 (1051)
T ss_pred HHhccCc------Ccccccccccc
Confidence 5544433 55555555543
No 43
>KOG1061|consensus
Probab=52.05 E-value=87 Score=35.98 Aligned_cols=156 Identities=18% Similarity=0.157 Sum_probs=83.8
Q ss_pred HhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChh-----HHHHHHHHhhhhcccCC--CcccHHHHHHHHhhcCCCc
Q psy10039 50 SSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPS-----FIRDYTLQQAACISREE--QDPMLVNVIIEQMVSDTDP 122 (450)
Q Consensus 50 v~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~-----lvR~~~~~q~~~~s~~e--~~~~Ll~~Li~~ll~d~d~ 122 (450)
.+.|+.+.+.+.+.++++.|...|+=-|..|.+.+|+ +...++.+......... .....++.+.+-.-.|..+
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e 236 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE 236 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh
Confidence 5789999999999999999999999999999999874 23333333322111111 1233344444433333211
Q ss_pred chhHHHHHHHHHHHhcCCCCCCc--cCCc--hhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHH
Q psy10039 123 ELGRAVQLMSILKILIDPDNMLS--SINK--TEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELL 198 (450)
Q Consensus 123 ~LG~~~Ql~eaLk~LLDp~~m~~--~~~~--~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL 198 (450)
.-++.+-+.-.|---|... ++-+ -....++..+++..+.++-.||+...+..+ . ..-..|.||+.++
T Consensus 237 ----a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e----~qyvaLrNi~lil 307 (734)
T KOG1061|consen 237 ----AEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-E----IQYVALRNINLIL 307 (734)
T ss_pred ----HHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-h----hhHHHHhhHHHHH
Confidence 2233333222222111000 0000 122345555777788888889888765443 1 2234566776666
Q ss_pred HHHHhhccchhhhhhh
Q psy10039 199 SFCVEHHSYHIKNFVL 214 (450)
Q Consensus 199 ~Fcv~~H~~riK~fil 214 (450)
--+=.+-...+|.|+.
T Consensus 308 ~~~p~~~~~~~~~Ff~ 323 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFC 323 (734)
T ss_pred HhChHHHHhHhHeeee
Confidence 4443333344444443
No 44
>KOG1061|consensus
Probab=51.41 E-value=1.5e+02 Score=34.14 Aligned_cols=177 Identities=18% Similarity=0.215 Sum_probs=94.8
Q ss_pred HHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcC
Q psy10039 60 VVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILID 139 (450)
Q Consensus 60 ~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLD 139 (450)
-+++++++.+|.+++.....+=+.||.+++ +..|++.|-+++ .|.+| ++-.-..-+|..+.+
T Consensus 128 ~~l~d~~~yvRktaa~~vakl~~~~~~~~~---------------~~gl~~~L~~ll-~D~~p--~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 128 KCLKDDDPYVRKTAAVCVAKLFDIDPDLVE---------------DSGLVDALKDLL-SDSNP--MVVANALAALSEIHE 189 (734)
T ss_pred HhccCCChhHHHHHHHHHHHhhcCChhhcc---------------ccchhHHHHHHh-cCCCc--hHHHHHHHHHHHHHH
Confidence 345666777777777666666666665532 456677776544 58888 666667777777776
Q ss_pred CCCCCccCCchhHHHHHHHHH---hhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccch-----hhh
Q psy10039 140 PDNMLSSINKTEKCEFLNYFY---KYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYH-----IKN 211 (450)
Q Consensus 140 p~~m~~~~~~~e~~~fl~~FY---~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~r-----iK~ 211 (450)
.++-..... ..-.+++.+- ..|-.|-=.++++.-....+. + ..=...+|+.++=..+|-.-. .|-
T Consensus 190 ~~~~~~~~~--l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~-d----~~ea~~i~~r~~p~Lqh~n~avvlsavKv 262 (734)
T KOG1061|consen 190 SHPSVNLLE--LNPQLINKLLEALNECTEWGQIFILDCLAEYVPK-D----SREAEDICERLTPRLQHANSAVVLSAVKV 262 (734)
T ss_pred hCCCCCccc--ccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCC-C----chhHHHHHHHhhhhhccCCcceEeehHHH
Confidence 543111000 1111222222 123333323333322211111 1 111225777766544443211 121
Q ss_pred hh--------hhhhHHHHHH-Hh--hccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCch
Q psy10039 212 FV--------LNKDLLRKVL-VL--MKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLF 262 (450)
Q Consensus 212 fi--------l~~~ll~rVl-~L--l~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf 262 (450)
+. ....+..|+. .| +.+...-+...|+|=++=++...++ +.+.=++.=.+
T Consensus 263 ~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~ 323 (734)
T KOG1061|consen 263 ILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE-ILKVEIKVFFC 323 (734)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH-HHHhHhHeeee
Confidence 11 2245566655 22 4567777889999999999998888 77877777543
No 45
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=50.93 E-value=90 Score=31.58 Aligned_cols=82 Identities=13% Similarity=0.274 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHH--HHhhccchhhhhhhhhhHHHHHHHhhccCCc-----chhHHHHHHHHHHhcCChhHHHHHHHhhC
Q psy10039 188 AQLLGVILELLSF--CVEHHSYHIKNFVLNKDLLRKVLVLMKSCHT-----FLVLSSLRFMRKIIAMKDDFYNRYIIKGH 260 (450)
Q Consensus 188 ~~ll~~l~eLL~F--cv~~H~~riK~fil~~~ll~rVl~Ll~~~~K-----~L~L~AlRf~R~iI~l~Defy~ryiik~n 260 (450)
+..-..+|-.|.- ||-.|+-- |..+++-++.--.--.++...| +|||+++-.+.++|..+|.-...|+....
T Consensus 61 ~~~snRVcnaLaLlQ~vAshpet-r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tE 139 (262)
T PF04078_consen 61 ARQSNRVCNALALLQCVASHPET-RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTE 139 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTT-HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHcChHH-HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhc
Confidence 3445567777755 88889864 4456677777655544443322 69999999999999999999999999999
Q ss_pred chHHHHHHhh
Q psy10039 261 LFQPVIDTFN 270 (450)
Q Consensus 261 Lf~PIl~~f~ 270 (450)
++-.-+.++.
T Consensus 140 iiplcLr~me 149 (262)
T PF04078_consen 140 IIPLCLRIME 149 (262)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9988888774
No 46
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=50.36 E-value=72 Score=36.64 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=69.5
Q ss_pred hhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHH
Q psy10039 210 KNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEY 289 (450)
Q Consensus 210 K~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~ 289 (450)
|.-+...+++.++++|+.+++.-++-.|+|.+-++=. |.-....|++.|++.+++.++.....+ ..|+-++..
T Consensus 324 K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf--d~~~R~~mV~~GlIPkLv~LL~d~~~~-----~val~iLy~ 396 (708)
T PF05804_consen 324 KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF--DPELRSQMVSLGLIPKLVELLKDPNFR-----EVALKILYN 396 (708)
T ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc--CHHHHHHHHHCCCcHHHHHHhCCCchH-----HHHHHHHHH
Confidence 7788999999999999999999899999999998755 555688999999999999988643222 347777777
Q ss_pred HHh-----------hChHHHHHHHHHH
Q psy10039 290 IKL-----------EDIKVLCSHVVET 305 (450)
Q Consensus 290 Ir~-----------eNik~Li~hlve~ 305 (450)
|.. +-+..|+..+.++
T Consensus 397 LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 397 LSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred hccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 753 3455566665554
No 47
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=49.34 E-value=44 Score=30.95 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhcc
Q psy10039 127 AVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHS 206 (450)
Q Consensus 127 ~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~ 206 (450)
+..++++|-.+|+.+----=...+++++|++.|-+-|...| +++.. .-...+-..++++||.||.+|.
T Consensus 98 ~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~ll-----E~~~~-------~K~~~ik~~if~il~~~vk~h~ 165 (171)
T PF12922_consen 98 RERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLL-----ENPEI-------VKNKSIKDAIFRILGTAVKKHN 165 (171)
T ss_pred HHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHH-----cChHh-------hccHHHHHHHHHHHHHHHHHcc
Confidence 44455666666654210000012589999998888776544 22111 1234577789999999999997
Q ss_pred ch
Q psy10039 207 YH 208 (450)
Q Consensus 207 ~r 208 (450)
+-
T Consensus 166 h~ 167 (171)
T PF12922_consen 166 HA 167 (171)
T ss_pred cc
Confidence 63
No 48
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=49.12 E-value=1.9e+02 Score=32.96 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhc-cCCcchhHHHHHHHHHHhc
Q psy10039 194 ILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMK-SCHTFLVLSSLRFMRKIIA 246 (450)
Q Consensus 194 l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~-~~~K~L~L~AlRf~R~iI~ 246 (450)
.+=|||++|+.|+.+. +-|++..|...+++.|. -.....+-+||-++=.+|-
T Consensus 88 ~L~Ll~~~v~~qp~~l-~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 88 ALTLLGHFVRSQPPWL-YKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred HHHHHHHHHhcCCchH-HHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 5567899999999986 56899999999998654 5566688899998887765
No 49
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=48.82 E-value=1e+02 Score=28.44 Aligned_cols=124 Identities=14% Similarity=0.183 Sum_probs=77.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHhhC-hhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHH
Q psy10039 56 PALEVVLSAEDIATKNAAIDILNFIIEFS-PSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSIL 134 (450)
Q Consensus 56 ~vi~~~L~~~d~~ir~~atdIL~~iie~d-p~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaL 134 (450)
.-|.--|++.++.-|-.|+-++..+++++ +..+-++. ...+..|+..|-. .+| ..++.-...+|
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-------------~~W~~~Ll~~L~~-~~~-~~~~~~ai~~L 92 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHG-------------SQWLRALLSILEK-PDP-PSVLEAAIITL 92 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHH-------------HHHHHHHHHHHcC-CCC-HHHHHHHHHHH
Confidence 34666788899999999999999999997 66653332 2335555554444 343 35566677777
Q ss_pred HHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhh
Q psy10039 135 KILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNF 212 (450)
Q Consensus 135 k~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~f 212 (450)
..|++- +.+ +.++-.=+=...++.++.+++..... .......++.|.=|+.+||--+|.|
T Consensus 93 ~~l~~~--~~~------~p~l~Rei~tp~l~~~i~~ll~l~~~----------~~~~~~~l~~L~~ll~~~ptt~rp~ 152 (165)
T PF08167_consen 93 TRLFDL--IRG------KPTLTREIATPNLPKFIQSLLQLLQD----------SSCPETALDALATLLPHHPTTFRPF 152 (165)
T ss_pred HHHHHH--hcC------CCchHHHHhhccHHHHHHHHHHHHhc----------cccHHHHHHHHHHHHHHCCccccch
Confidence 777752 111 11111111122366667777665332 2344578899999999998777765
No 50
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=48.12 E-value=45 Score=22.31 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=29.3
Q ss_pred HHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHH
Q psy10039 47 KTLSSLGILPALEVVLSAEDIATKNAAIDILNFII 81 (450)
Q Consensus 47 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~ii 81 (450)
..+++.|.++.+--.|++++..++..++..|..|.
T Consensus 6 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 6 QAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 45678899999999999889999999988887653
No 51
>PRK10167 hypothetical protein; Provisional
Probab=44.47 E-value=87 Score=29.58 Aligned_cols=106 Identities=18% Similarity=0.278 Sum_probs=65.2
Q ss_pred hhhHHHHHHHhhccCCcchhHH----HHHHHHHHhcC------ChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHH
Q psy10039 215 NKDLLRKVLVLMKSCHTFLVLS----SLRFMRKIIAM------KDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVL 284 (450)
Q Consensus 215 ~~~ll~rVl~Ll~~~~K~L~L~----AlRf~R~iI~l------~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~L 284 (450)
..+.-.+-+.-..+++|+|.++ +-|-++.+|+- -|+++.+|. .-++.++..-..|.+..| ++.
T Consensus 25 ~~~~t~~~Lv~Fhsr~KyllMaHsq~~yr~LG~lva~~~~~~~~~~~~~~Y~------~~lm~al~~~~t~~~~~N-vL~ 97 (169)
T PRK10167 25 EHGLTRGALLDYHSRYKLVFLAHSQPEYRKLGPFVADIHQWQSLDDFYNQYR------QRVIVLLSHPANVRDHTN-VLM 97 (169)
T ss_pred HcCCCHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHhcCCcCCCHHHHHHHHH------HHHHHHHcCCCCcchhHH-HHH
Confidence 3344344444567788887776 78888888873 355677765 346788888888888877 677
Q ss_pred HHHHHHHhh---ChHHHHHHHHHHhHhhccCcc-chhhHHHHHHHHH
Q psy10039 285 ELFEYIKLE---DIKVLCSHVVETYGDELESIH-YVQTFRSLRLKYN 327 (450)
Q Consensus 285 Elfe~Ir~e---Nik~Li~hlve~y~~~l~~i~-yv~tf~~L~~rye 327 (450)
-++-|.++. .=|.-..-+++.|+.-.-.+. =+...+.+..+|.
T Consensus 98 Hi~GYFKk~Ls~~EKq~l~~lI~~Yr~g~vpl~vpltlL~h~~~~y~ 144 (169)
T PRK10167 98 HVQGYFRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYP 144 (169)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCC
Confidence 888888753 234455556666665443332 2233444444554
No 52
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=43.99 E-value=87 Score=27.99 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcC
Q psy10039 187 NAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAM 247 (450)
Q Consensus 187 ~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l 247 (450)
++..+.-.|-=|..+|++||. .|..+-.-+.=.+|..||...+.=++=-||.++-.++.-
T Consensus 57 d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 555666777778889999976 587887888888999999999999999999999888763
No 53
>KOG1293|consensus
Probab=42.37 E-value=1.3e+02 Score=34.11 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=41.8
Q ss_pred HHHHhCCC---hhhHHHHHHHHHHHHhh-ChhH-------HHHHHHHhhhhcccCCC---cccHHHHHHHHhhcCCCcch
Q psy10039 59 EVVLSAED---IATKNAAIDILNFIIEF-SPSF-------IRDYTLQQAACISREEQ---DPMLVNVIIEQMVSDTDPEL 124 (450)
Q Consensus 59 ~~~L~~~d---~~ir~~atdIL~~iie~-dp~l-------vR~~~~~q~~~~s~~e~---~~~Ll~~Li~~ll~d~d~~L 124 (450)
+.++.-.+ +=+|..|+|+|.+.+-- |++. +|..++.-- +.+. ..-.-.-.|.-++.|+| +
T Consensus 445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d----e~~k~~~~~ki~a~~i~~l~nd~d--~ 518 (678)
T KOG1293|consen 445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD----EEEKFQLLAKIPANLILDLINDPD--W 518 (678)
T ss_pred HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch----HHHHHHHHHHhhHHHHHHHHhCCC--H
Confidence 34444443 33778888887777654 4433 222222110 0011 11112233445566655 6
Q ss_pred hHHHHHHHHHHHhcCC
Q psy10039 125 GRAVQLMSILKILIDP 140 (450)
Q Consensus 125 G~~~Ql~eaLk~LLDp 140 (450)
|++.|.++.||-|++-
T Consensus 519 ~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 519 AVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999999974
No 54
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=40.93 E-value=66 Score=25.23 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=33.2
Q ss_pred HHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q psy10039 61 VLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKIL 137 (450)
Q Consensus 61 ~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~L 137 (450)
..+++++.+|..++..|..+ .+...+..|++.+ .|.+| .++.+...+|..+
T Consensus 8 l~~~~~~~vr~~a~~~L~~~-----------------------~~~~~~~~L~~~l-~d~~~--~vr~~a~~aL~~i 58 (88)
T PF13646_consen 8 LQNDPDPQVRAEAARALGEL-----------------------GDPEAIPALIELL-KDEDP--MVRRAAARALGRI 58 (88)
T ss_dssp HHTSSSHHHHHHHHHHHHCC-----------------------THHHHHHHHHHHH-TSSSH--HHHHHHHHHHHCC
T ss_pred HhcCCCHHHHHHHHHHHHHc-----------------------CCHhHHHHHHHHH-cCCCH--HHHHHHHHHHHHh
Confidence 33666777777776666511 1234466777766 77776 7788888888754
No 55
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=39.93 E-value=52 Score=22.79 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=28.5
Q ss_pred HHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHH
Q psy10039 47 KTLSSLGILPALEVVLSAEDIATKNAAIDILNFI 80 (450)
Q Consensus 47 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~i 80 (450)
+.+++.|.++.+--.|+++|..++..|+=.|..|
T Consensus 6 ~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 6 QAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999998887766554
No 56
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=39.89 E-value=1e+03 Score=31.30 Aligned_cols=212 Identities=14% Similarity=0.124 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHH
Q psy10039 52 LGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLM 131 (450)
Q Consensus 52 ~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~ 131 (450)
.|-++.|...|++++..++..|+.+|..+...++......+.... +.-|+.+|-. .+. .++.+..
T Consensus 608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga------------IpPLV~LLss-~~~--~v~keAA 672 (2102)
T PLN03200 608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI------------INPCIKLLTN-NTE--AVATQSA 672 (2102)
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC------------HHHHHHHHhc-CCh--HHHHHHH
Confidence 456677777777777777777777777777766665544333222 3334444433 333 6788888
Q ss_pred HHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhh
Q psy10039 132 SILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKN 211 (450)
Q Consensus 132 eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~ 211 (450)
-+|-.|...- +..++..+.+ ..+++-|...|... +..+-...++-|.-+..+..-+ .
T Consensus 673 ~AL~nL~~~~------~~~q~~~~v~---~GaV~pL~~LL~~~------------d~~v~e~Al~ALanLl~~~e~~--~ 729 (2102)
T PLN03200 673 RALAALSRSI------KENRKVSYAA---EDAIKPLIKLAKSS------------SIEVAEQAVCALANLLSDPEVA--A 729 (2102)
T ss_pred HHHHHHHhCC------CHHHHHHHHH---cCCHHHHHHHHhCC------------ChHHHHHHHHHHHHHHcCchHH--H
Confidence 8888888531 1112222221 34566666665332 2234556777777777766543 3
Q ss_pred hhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCC--hhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHH
Q psy10039 212 FVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMK--DDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEY 289 (450)
Q Consensus 212 fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~--Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~ 289 (450)
=+.+.+.+.....+|++...-.+=.|.+-+-.+..-. |+-+-.|+..-+...|.++++.. .+-+|-.+|-.||-+.+
T Consensus 730 ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~-~~~~~~~~~~al~~l~~ 808 (2102)
T PLN03200 730 EALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS-TDLDSSATSEALEALAL 808 (2102)
T ss_pred HHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc-CCcchhhHHHHHHHHHH
Confidence 3567788999999999988778888888777665443 34566899999999999997765 45567777778888888
Q ss_pred HHh-------------------hChHHHHHHH
Q psy10039 290 IKL-------------------EDIKVLCSHV 302 (450)
Q Consensus 290 Ir~-------------------eNik~Li~hl 302 (450)
+-+ +++.+|+.+|
T Consensus 809 l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l 840 (2102)
T PLN03200 809 LARTKGGANFSHPPWAVLAEVPSSLEPLVRCL 840 (2102)
T ss_pred HHhhcccCCCCCCchhhHHhccCchHHHHHHH
Confidence 865 4677887777
No 57
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=39.47 E-value=23 Score=32.47 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=25.8
Q ss_pred HhCCCHHHHHHHHhCCChhhHHHHHHHHHHHH
Q psy10039 50 SSLGILPALEVVLSAEDIATKNAAIDILNFII 81 (450)
Q Consensus 50 v~~GL~~vi~~~L~~~d~~ir~~atdIL~~ii 81 (450)
-..+.+..|.-+|..++..+|..++|||..+.
T Consensus 155 ~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 155 SHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 35778888888999999999999999998874
No 58
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=38.04 E-value=4.3e+02 Score=26.48 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=73.1
Q ss_pred CcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh-hChhHHHHHH
Q psy10039 14 NTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE-FSPSFIRDYT 92 (450)
Q Consensus 14 ~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie-~dp~lvR~~~ 92 (450)
+.+..-|+.|+.-|=-||-+.|.+-.+. |.++-.+++.++..+|..|.-++.-++- |.+..+....
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~~~a~~~-------------l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDKELAKEH-------------LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhChHHHHHH-------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 3455789999999999999988553221 2333344455788999999888887665 6776665442
Q ss_pred HHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC
Q psy10039 93 LQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDP 140 (450)
Q Consensus 93 ~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp 140 (450)
... ...+...++.++.+.|-.+ +| .++..++|.+--||=.
T Consensus 105 ~~~-----~~~~~~~l~~~l~~~l~~~-~~--~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 105 DND-----ESVDSKSLLKILTKFLDSE-NP--ELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccC-----ccchHhHHHHHHHHHHhcC-CH--HHHHHHHHHHHHHHhc
Confidence 211 1234578889998888777 66 5699999988777643
No 59
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=37.47 E-value=58 Score=34.43 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHh-CCCHHHHHHHHhCC---ChhhHHHHHHHHHHHHhhChhHHHHH
Q psy10039 22 DLALFLREYCQFSQNLQPQAKENFYKTLSS-LGILPALEVVLSAE---DIATKNAAIDILNFIIEFSPSFIRDY 91 (450)
Q Consensus 22 d~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~-~GL~~vi~~~L~~~---d~~ir~~atdIL~~iie~dp~lvR~~ 91 (450)
-+.+||+..+.. ...=....|+|++ .-|+..+..+|++. .+.+-..|++|+..+|.++|..+-..
T Consensus 79 ~lLk~l~~~~~~-----~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l 147 (379)
T PF06025_consen 79 SLLKFLSHAMQH-----SGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSIL 147 (379)
T ss_pred HHHHHHHHHhcc-----CCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHH
Confidence 344444444441 4445566788999 88999999999998 47899999999999999999887543
No 60
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=35.84 E-value=65 Score=35.45 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHhCCCHHHHHHHHh---CC---ChhhHHHHHHHHHHHHhhChhHHHHHH
Q psy10039 20 RRDLALFLREYCQFSQNLQ-PQAKENFYKTLSSLGILPALEVVLS---AE---DIATKNAAIDILNFIIEFSPSFIRDYT 92 (450)
Q Consensus 20 rrd~v~FL~q~c~laK~LQ-~~~r~~ff~~Lv~~GL~~vi~~~L~---~~---d~~ir~~atdIL~~iie~dp~lvR~~~ 92 (450)
..+.+.+|++.|.-|..=+ ...+..+.++|-+-|+-.++...+. .. ...+|.+|+.-|-.+.++.|..+|+.+
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l 563 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL 563 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 3455667777777554432 2567788899999996666666544 33 567999999999999999999999998
Q ss_pred HHhhh
Q psy10039 93 LQQAA 97 (450)
Q Consensus 93 ~~q~~ 97 (450)
++=-.
T Consensus 564 ~~I~~ 568 (618)
T PF01347_consen 564 LPIFM 568 (618)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87654
No 61
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=35.43 E-value=2.1e+02 Score=26.40 Aligned_cols=91 Identities=10% Similarity=0.207 Sum_probs=60.0
Q ss_pred hhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCC-hhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHH---HHHHHH
Q psy10039 214 LNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMK-DDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAV---LELFEY 289 (450)
Q Consensus 214 l~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~-Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~---LElfe~ 289 (450)
.-+.+..||..|++++.-.=+.+++..++..+.-. -+-+.++= ...+.-++.++....+ -..+.+|| -.+|++
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~--~~W~~~Ll~~L~~~~~-~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHG--SQWLRALLSILEKPDP-PSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999875 34443332 3455556666665333 34444444 456666
Q ss_pred HHh----------hChHHHHHHHHHHhH
Q psy10039 290 IKL----------EDIKVLCSHVVETYG 307 (450)
Q Consensus 290 Ir~----------eNik~Li~hlve~y~ 307 (450)
++. .++..++..+..--.
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~ 126 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQ 126 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHh
Confidence 653 266677777765444
No 62
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=35.22 E-value=1.1e+02 Score=28.30 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=63.3
Q ss_pred ChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCC--cccHHHHHHHHhhcCCCcchhHHHHH-HHHHHHhcCCCC
Q psy10039 66 DIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQ--DPMLVNVIIEQMVSDTDPELGRAVQL-MSILKILIDPDN 142 (450)
Q Consensus 66 d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~--~~~Ll~~Li~~ll~d~d~~LG~~~Ql-~eaLk~LLDp~~ 142 (450)
|+.+|..++-.+.-+.---|++|-.++-.-..+...... ...=+..|..++..|- +-.+.|+ .+.++.|.|++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~---ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM---IKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc---eeehhhhhHHHHHHHcCCCH
Confidence 567888888888877777777776665544432211100 1122445555555543 3568888 899999999854
Q ss_pred CCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHH
Q psy10039 143 MLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCV 202 (450)
Q Consensus 143 m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv 202 (450)
. -..+-..|+.+...+. ....++.+++|+++..-
T Consensus 78 ~--------Ir~~A~~~~~e~~~~~------------------~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 78 E--------IRSLARSFFSELLKKR------------------NPNIIYNNFPELISSLN 111 (178)
T ss_pred H--------HHHHHHHHHHHHHHhc------------------cchHHHHHHHHHHHHHh
Confidence 2 2345555555554331 12235777888887654
No 63
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=35.14 E-value=2.3e+02 Score=23.84 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=59.9
Q ss_pred HHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 3 EKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 3 ~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
.++....+.||.. .-|-.|+..|++++.=.. +...--.+++.++.-.|+++|+-|=..|+-.|..+.+
T Consensus 5 ~~~al~~L~dp~~--PvRa~gL~~L~~Li~~~~----------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLP--PVRAHGLVLLRKLIESKS----------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCc--chHHHHHHHHHHHHHcCC----------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3566667777664 478889998888875422 2222235678888889999999999999999999999
Q ss_pred hChhHHHHHHHHh
Q psy10039 83 FSPSFIRDYTLQQ 95 (450)
Q Consensus 83 ~dp~lvR~~~~~q 95 (450)
.+|.-|=..+.++
T Consensus 73 ~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 73 RHPDEVLPILLDE 85 (92)
T ss_pred HChHHHHHHHHHH
Confidence 9999554444444
No 64
>KOG1992|consensus
Probab=35.08 E-value=3.7e+02 Score=31.66 Aligned_cols=118 Identities=17% Similarity=0.304 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhh---ccCCc--chhHHHHHHHHHHhcCChhHHHHHHHhhCch
Q psy10039 188 AQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLM---KSCHT--FLVLSSLRFMRKIIAMKDDFYNRYIIKGHLF 262 (450)
Q Consensus 188 ~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll---~~~~K--~L~L~AlRf~R~iI~l~Defy~ryiik~nLf 262 (450)
..+-..|||+.+..++.-.=-+..|+ ++.+.-+-.|+ ..-.| .|+-.|+.|+-++...+ .|-.++...+++
T Consensus 261 ~~lka~ICEi~~LY~~kYeEef~~fl--~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~--~y~~~F~~~~vl 336 (960)
T KOG1992|consen 261 DKLKAQICEIFNLYATKYEEEFQPFL--PDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRP--HYAELFEGENVL 336 (960)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhh--hhHhhhcchHHH
Confidence 34556799999998876544444443 33343333343 33344 49999999999988754 566666666666
Q ss_pred HHHHHHhhhcCCCCcc-hhhHHHHH-----HHHHHhh-----------ChHHHHHHHHHHhHhhccCc
Q psy10039 263 QPVIDTFNRNKGRYNL-LDSAVLEL-----FEYIKLE-----------DIKVLCSHVVETYGDELESI 313 (450)
Q Consensus 263 ~PIl~~f~~n~~R~NL-lnSA~LEl-----fe~Ir~e-----------Nik~Li~hlve~y~~~l~~i 313 (450)
.-|.+..+- -|+ +--.--|+ .||||+. -.-.|+++|.++|..+.-.+
T Consensus 337 ~~i~e~Vvl----pN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v 400 (960)
T KOG1992|consen 337 AQICEKVVL----PNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGV 400 (960)
T ss_pred HHHHHhhcc----cccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHH
Confidence 666554321 111 11122344 4689872 23479999999996665554
No 65
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=34.88 E-value=4.8e+02 Score=26.11 Aligned_cols=150 Identities=17% Similarity=0.272 Sum_probs=91.5
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHHhhCh-hHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q psy10039 58 LEVVLSAEDIATKNAAIDILNFIIEFSP-SFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKI 136 (450)
Q Consensus 58 i~~~L~~~d~~ir~~atdIL~~iie~dp-~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~ 136 (450)
+...|.++|..+|..|+..|..+++.=| ..+.. +| -..|+...++.| .|. +.-.-...+|..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~---~e---------v~~L~~F~~~rl-~D~----~~~~~~l~gl~~ 66 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSR---QE---------VQVLLDFFCSRL-DDH----ACVQPALKGLLA 66 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccH---HH---------HHHHHHHHHHHh-ccH----hhHHHHHHHHHH
Confidence 4567889999999999999999999755 33322 11 356777777766 332 223334788888
Q ss_pred hcCCCCCCccCCchhHHHHHHHHHhhh-HHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhh
Q psy10039 137 LIDPDNMLSSINKTEKCEFLNYFYKYS-IHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLN 215 (450)
Q Consensus 137 LLDp~~m~~~~~~~e~~~fl~~FY~~~-~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~ 215 (450)
|+.-.+.. +..-..+++.+++++ ++. +....-..+.+||-+.+++|.--+ -=+.
T Consensus 67 L~~~~~~~----~~~~~~i~~~l~~~~~~q~-------------------~~q~~R~~~~~ll~~l~~~~~~~l--~~~~ 121 (262)
T PF14500_consen 67 LVKMKNFS----PESAVKILRSLFQNVDVQS-------------------LPQSTRYAVYQLLDSLLENHREAL--QSMG 121 (262)
T ss_pred HHhCcCCC----hhhHHHHHHHHHHhCChhh-------------------hhHHHHHHHHHHHHHHHHHhHHHH--Hhch
Confidence 88432211 122344555555543 110 112223356778888888875333 3356
Q ss_pred hhHHHHHHHhhc-cCCcchhHHHHHHHHHHhcCCh
Q psy10039 216 KDLLRKVLVLMK-SCHTFLVLSSLRFMRKIIAMKD 249 (450)
Q Consensus 216 ~~ll~rVl~Ll~-~~~K~L~L~AlRf~R~iI~l~D 249 (450)
.+.+..+++++. -|+-=--+.+.+.+|.++..=|
T Consensus 122 ~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 122 DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 778888888765 3344466777888887776555
No 66
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=34.77 E-value=3e+02 Score=31.31 Aligned_cols=177 Identities=20% Similarity=0.284 Sum_probs=95.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhh--------hcc-----------cCCCcccHHHHHHHHh
Q psy10039 56 PALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAA--------CIS-----------REEQDPMLVNVIIEQM 116 (450)
Q Consensus 56 ~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~--------~~s-----------~~e~~~~Ll~~Li~~l 116 (450)
.++..-|++.....|-.|.-||..+----|..|.. +..+.+ .++ ..|.-..|++++..-+
T Consensus 306 s~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v-cN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfv 384 (898)
T COG5240 306 SSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV-CNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFV 384 (898)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee-cChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 46666777788888888888888887777766532 112211 011 1122334555555444
Q ss_pred hcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHH-----------HhhhHHHhccccccCCCCCccccccc
Q psy10039 117 VSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYF-----------YKYSIHLLMDPLLDNTKKDEVQVDSY 185 (450)
Q Consensus 117 l~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~F-----------Y~~~~~~L~~PL~~~~~~~~~~~~~~ 185 (450)
.|-+. |-|.-+.+|+|.|--- . +.++.-+|+|. |+++|---+.-.+...+ -
T Consensus 385 -hD~SD--~FKiI~ida~rsLsl~--F-----p~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p--------~ 446 (898)
T COG5240 385 -HDMSD--GFKIIAIDALRSLSLL--F-----PSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDP--------D 446 (898)
T ss_pred -Hhhcc--CceEEeHHHHHHHHhh--C-----cHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCc--------h
Confidence 44443 7799999999998531 1 12444455443 22221111111111110 1
Q ss_pred chHHHHHHHHHHHHHHHhhc------------------cc----hh-hhhhhhhhHHHHHH--Hh----hccCCcchhHH
Q psy10039 186 HNAQLLGVILELLSFCVEHH------------------SY----HI-KNFVLNKDLLRKVL--VL----MKSCHTFLVLS 236 (450)
Q Consensus 186 ~~~~ll~~l~eLL~Fcv~~H------------------~~----ri-K~fil~~~ll~rVl--~L----l~~~~K~L~L~ 236 (450)
...-.+..||+.+-=|--|. |- || -.-||+|++++..+ .| ++..++++.=+
T Consensus 447 skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s 526 (898)
T COG5240 447 SKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQS 526 (898)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHH
Confidence 22334555555544332111 10 11 12378888888644 35 56778888888
Q ss_pred HHHHHHHHhcCChhH
Q psy10039 237 SLRFMRKIIAMKDDF 251 (450)
Q Consensus 237 AlRf~R~iI~l~Def 251 (450)
..-.++.|+.-+|+-
T Consensus 527 v~~~lkRclnD~Dde 541 (898)
T COG5240 527 VENALKRCLNDQDDE 541 (898)
T ss_pred HHHHHHHHhhcccHH
Confidence 888889998888763
No 67
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=34.57 E-value=3.8e+02 Score=24.86 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=55.5
Q ss_pred HHHHHhhcC-CCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 4 KDLLHLLME-ENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 4 ~eLF~~l~~-~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
+-|++.|++ +....+-+.-.+.|+--+|.-+.. ...|..+-..|...||..+++-.-..++..+.. -+++.....+
T Consensus 24 ~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d--~~~R~~lr~e~~~~GL~~il~~l~~~~~~~L~~-Qi~~f~~~~~ 100 (197)
T PF06367_consen 24 QSLVGALESVDSSDIEYKTACLQFINSLINSPED--LNFRVHLRNEFERLGLLDILEKLRNLEDDDLQE-QIDIFEENEE 100 (197)
T ss_dssp HHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SS--HHHHHHHHHHHHHTTHHHHHHHHTTS--HHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCcHHHHHHHHhcchHHHHH-HHHHHHHHHH
Confidence 346667776 667888899999999999999875 578999999999999999999977775655543 3444444443
Q ss_pred hCh
Q psy10039 83 FSP 85 (450)
Q Consensus 83 ~dp 85 (450)
-|.
T Consensus 101 ~D~ 103 (197)
T PF06367_consen 101 EDE 103 (197)
T ss_dssp HHH
T ss_pred hhH
Confidence 333
No 68
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=33.50 E-value=2.9e+02 Score=27.86 Aligned_cols=104 Identities=12% Similarity=0.164 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhh-----hHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCch
Q psy10039 188 AQLLGVILELLSFCVEHHSYHIKNFVLNK-----DLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLF 262 (450)
Q Consensus 188 ~~ll~~l~eLL~Fcv~~H~~riK~fil~~-----~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf 262 (450)
.....+++=++.=++..++.+.+.|.--. ....-.++++.+.+.+.++.|.+++=.+++-.+..-...- ...+
T Consensus 71 ~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~--~~~l 148 (312)
T PF03224_consen 71 DDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV--KEAL 148 (312)
T ss_dssp HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH--HHHH
Confidence 34555566666556778887777665422 2556677789999999999999999999998776655533 5666
Q ss_pred HHHHHHhhhcC--CCCcchhhHHHHHHHHHHhh
Q psy10039 263 QPVIDTFNRNK--GRYNLLDSAVLELFEYIKLE 293 (450)
Q Consensus 263 ~PIl~~f~~n~--~R~NLlnSA~LElfe~Ir~e 293 (450)
.++++.+.... +..|+...|+.-|-+..|..
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~ 181 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK 181 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc
Confidence 77887776533 23345555555555555544
No 69
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=33.33 E-value=51 Score=29.77 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhh
Q psy10039 3 EKDLLHLLMEENTNELRRRDLALFLREYCQFSQ 35 (450)
Q Consensus 3 ~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK 35 (450)
|..|-..|+||+.+.+||++++.++--+|..++
T Consensus 69 m~~l~~aL~dp~Is~erK~~~l~yIaSya~~c~ 101 (126)
T PF07560_consen 69 MHQLIKALQDPTISKERKREALNYIASYADACP 101 (126)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHhccCc
Confidence 678889999999999999999999887776544
No 70
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=32.71 E-value=23 Score=25.51 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.7
Q ss_pred CCHHHHHHHHhCCChhhHHHHHHHH
Q psy10039 53 GILPALEVVLSAEDIATKNAAIDIL 77 (450)
Q Consensus 53 GL~~vi~~~L~~~d~~ir~~atdIL 77 (450)
.+..+|...|.++++.||.+|.|+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5667888999999999999999874
No 71
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=32.69 E-value=2.3e+02 Score=30.94 Aligned_cols=86 Identities=15% Similarity=0.310 Sum_probs=63.8
Q ss_pred hhhhhhhhHHHHHHHhhccCCcc-hhHHHHHHHHHHhcCC-----h-------hHHHHHHHhhCchHHHHHHhhhcCCCC
Q psy10039 210 KNFVLNKDLLRKVLVLMKSCHTF-LVLSSLRFMRKIIAMK-----D-------DFYNRYIIKGHLFQPVIDTFNRNKGRY 276 (450)
Q Consensus 210 K~fil~~~ll~rVl~Ll~~~~K~-L~L~AlRf~R~iI~l~-----D-------efy~ryiik~nLf~PIl~~f~~n~~R~ 276 (450)
-.++-+.+++.|++.+|.+.+.. ..-+|--|++.+|..- + .=..|.|++....+-+++....... .
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~-~ 133 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG-G 133 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC-c
Confidence 44666799999999999866665 7778888999987752 1 4567889999999999988886444 5
Q ss_pred cchhhHHHHHHHHHHhhChH
Q psy10039 277 NLLDSAVLELFEYIKLEDIK 296 (450)
Q Consensus 277 NLlnSA~LElfe~Ir~eNik 296 (450)
+-++.++-=+++.||+.|..
T Consensus 134 s~lvn~v~IlieLIRknnsd 153 (475)
T PF04499_consen 134 SSLVNGVSILIELIRKNNSD 153 (475)
T ss_pred chHHHHHHHHHHHHHhcccc
Confidence 55555554499999987643
No 72
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=32.43 E-value=1.8e+02 Score=25.73 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHH
Q psy10039 188 AQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVID 267 (450)
Q Consensus 188 ~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~ 267 (450)
-.+-..|||++. +. -.-.+..++-+.+-++.++...++-||..+-+|+.---.-|+..+.....+.-++.
T Consensus 18 ~~~il~icd~I~----~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 18 WALNLELCDLIN----LK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred HHHHHHHHHHHh----CC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 345556888753 22 13334556666677788889999999999999999887878888888776666777
Q ss_pred Hhhhc
Q psy10039 268 TFNRN 272 (450)
Q Consensus 268 ~f~~n 272 (450)
++...
T Consensus 88 l~~~~ 92 (133)
T cd03561 88 IAKNS 92 (133)
T ss_pred HhCCC
Confidence 66543
No 73
>KOG2129|consensus
Probab=31.39 E-value=32 Score=36.91 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=17.0
Q ss_pred CCCCChhhhhhccCCCccccccC
Q psy10039 368 PRQMDEDEEIWFNEEDSFEDASA 390 (450)
Q Consensus 368 ~r~ld~eEE~yFn~ddde~~~~~ 390 (450)
...++.+||.|||+--|.++..+
T Consensus 319 esslemdeery~Ne~~~~g~s~~ 341 (552)
T KOG2129|consen 319 ESSLEMDEERYLNEFVDFGDSVE 341 (552)
T ss_pred hHHHHHHHHHHHhhhhccCCcee
Confidence 34677889999999888665433
No 74
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=29.91 E-value=1.8e+02 Score=25.91 Aligned_cols=73 Identities=11% Similarity=0.164 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHH
Q psy10039 189 QLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDT 268 (450)
Q Consensus 189 ~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~ 268 (450)
.+-..|||++. +.+ .-.+..++-+.+-++++....++-||..+-+||.=--.-|+..+....+...+..+
T Consensus 19 ~~~l~icD~i~----~~~------~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l 88 (133)
T smart00288 19 ELILEICDLIN----STP------DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKL 88 (133)
T ss_pred HHHHHHHHHHh----CCC------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHH
Confidence 34456777752 221 22344555666667788889999999999999997678888999999888877766
Q ss_pred hhh
Q psy10039 269 FNR 271 (450)
Q Consensus 269 f~~ 271 (450)
+..
T Consensus 89 ~~~ 91 (133)
T smart00288 89 IKP 91 (133)
T ss_pred HcC
Confidence 554
No 75
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=29.35 E-value=1.1e+02 Score=27.45 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=42.4
Q ss_pred hHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhh
Q psy10039 217 DLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 217 ~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~ 271 (450)
.++..+..=|+.+..|+++=|||+++.|+.-..+-|.+.+.+|- +++..+.+
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~---~~Ik~~~~ 89 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS---AQIRECAN 89 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH---HHHHHHHH
Confidence 55666666667788899999999999999999999999999984 56666554
No 76
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=28.82 E-value=3.1e+02 Score=29.21 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=25.6
Q ss_pred CHHHHHHHHhCC-ChhhHHHHHHHHHHHHhhCh
Q psy10039 54 ILPALEVVLSAE-DIATKNAAIDILNFIIEFSP 85 (450)
Q Consensus 54 L~~vi~~~L~~~-d~~ir~~atdIL~~iie~dp 85 (450)
+-++++-++..+ .+.+|..++|++-.|++.--
T Consensus 258 lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 258 LPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred hHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 456677777666 88999999999999998743
No 77
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=28.24 E-value=6.1e+02 Score=25.28 Aligned_cols=155 Identities=21% Similarity=0.290 Sum_probs=91.3
Q ss_pred HHHHHH-hCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhH--HHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCC
Q psy10039 45 FYKTLS-SLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSF--IRDYTLQQAACISREEQDPMLVNVIIEQMVSDTD 121 (450)
Q Consensus 45 ff~~Lv-~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~l--vR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d 121 (450)
+-+.++ +.|.+++|.-.|..+++.+|..|...|..+-....+. |+. .+.-+++..++..
T Consensus 45 ~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~-----------------~i~~Vc~~~~s~~- 106 (254)
T PF04826_consen 45 FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM-----------------YIPQVCEETVSSP- 106 (254)
T ss_pred hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH-----------------HHHHHHHHHhcCC-
Confidence 445555 5799999999999999999988877766443332222 222 2444556555542
Q ss_pred cchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHH
Q psy10039 122 PELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFC 201 (450)
Q Consensus 122 ~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fc 201 (450)
+....|+ .+||.|.. |..+ +++=..+. .+++.|+ +|+...+. .+-.+.+.+|.-.
T Consensus 107 --lns~~Q~-agLrlL~n---Ltv~------~~~~~~l~-~~i~~ll-~LL~~G~~-----------~~k~~vLk~L~nL 161 (254)
T PF04826_consen 107 --LNSEVQL-AGLRLLTN---LTVT------NDYHHMLA-NYIPDLL-SLLSSGSE-----------KTKVQVLKVLVNL 161 (254)
T ss_pred --CCCHHHH-HHHHHHHc---cCCC------cchhhhHH-hhHHHHH-HHHHcCCh-----------HHHHHHHHHHHHh
Confidence 2336664 47888874 3221 11212222 3567776 44443211 1222344444433
Q ss_pred HhhccchhhhhhhhhhHHHHHHHhhccC-CcchhHHHHHHHHHH
Q psy10039 202 VEHHSYHIKNFVLNKDLLRKVLVLMKSC-HTFLVLSSLRFMRKI 244 (450)
Q Consensus 202 v~~H~~riK~fil~~~ll~rVl~Ll~~~-~K~L~L~AlRf~R~i 244 (450)
... +-- -..+++...+...+.|+.+. .+-+.+-||.||-++
T Consensus 162 S~n-p~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 162 SEN-PDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred ccC-HHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHH
Confidence 222 111 33678888999999999887 566888889998876
No 78
>KOG2274|consensus
Probab=28.23 E-value=4.2e+02 Score=31.52 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCC----hhhHHHHHHHHHH
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAED----IATKNAAIDILNF 79 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d----~~ir~~atdIL~~ 79 (450)
...++.|..-+.+..---.+--.++++|+.+-+.-|. ...+.-+|++ .|+.++ ...-..|+|+|.+
T Consensus 574 P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~~iPslis---------il~~~~~~~~~~l~~~aidvLtt 643 (1005)
T KOG2274|consen 574 PLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QERLIPSLIS---------VLQLNADKAPAGLCAIAIDVLTT 643 (1005)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHH---------HHcCcccccCchhhHHHHHHHHH
Q ss_pred HHhhChhHHHHHHHHhh-----hhcccCCCcccH------HHHHHHH----hhcCCCcchhHHH--HHHHHHHHhcCCCC
Q psy10039 80 IIEFSPSFIRDYTLQQA-----ACISREEQDPML------VNVIIEQ----MVSDTDPELGRAV--QLMSILKILIDPDN 142 (450)
Q Consensus 80 iie~dp~lvR~~~~~q~-----~~~s~~e~~~~L------l~~Li~~----ll~d~d~~LG~~~--Ql~eaLk~LLDp~~ 142 (450)
++..-|+=+-+-++.+. +|--.++|+.+| +.-+|.- +.+-.+. ++.+ -+++++-.||||++
T Consensus 644 vvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e--~g~~~~yImqV~sqLLdp~~ 721 (1005)
T KOG2274|consen 644 VLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDE--PGHNLWYIMQVLSQLLDPET 721 (1005)
T ss_pred HHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccC--CCccHHHHHHHHHHHcCCcc
No 79
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=28.02 E-value=6.1e+02 Score=32.59 Aligned_cols=93 Identities=12% Similarity=0.244 Sum_probs=50.5
Q ss_pred HHHHHHHhcCChhHHHHHHHhhCch-HHHHHHhhhcCCCCc-chhhHHHHHHHHHHhhChHHHHHHHHHHhHhhc-----
Q psy10039 238 LRFMRKIIAMKDDFYNRYIIKGHLF-QPVIDTFNRNKGRYN-LLDSAVLELFEYIKLEDIKVLCSHVVETYGDEL----- 310 (450)
Q Consensus 238 lRf~R~iI~l~Defy~ryiik~nLf-~PIl~~f~~n~~R~N-LlnSA~LElfe~Ir~eNik~Li~hlve~y~~~l----- 310 (450)
.+|||..=+++=.-.-.||-+++=| .-|+..|.+..+=.| =+..|.-.|++..|-=+=-.-|..|+|.|.+.+
T Consensus 652 A~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np 731 (1780)
T PLN03076 652 AAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNP 731 (1780)
T ss_pred HHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCC
Confidence 4577776666666666777666654 246666665543322 356666667776664333344555555554432
Q ss_pred ---cC--ccchhhHHHHHHHHHhhc
Q psy10039 311 ---ES--IHYVQTFRSLRLKYNQAQ 330 (450)
Q Consensus 311 ---~~--i~yv~tf~~L~~ryeq~~ 330 (450)
.. --|+-.|.-+-+.=+++.
T Consensus 732 ~~f~~~D~~yvLaysiIMLnTDlHn 756 (1780)
T PLN03076 732 KAFSSADTAYVLAYSVIMLNTDAHN 756 (1780)
T ss_pred CcCCCHHHHHHHHHHHHHHhHHhcC
Confidence 11 124445555555555554
No 80
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=27.45 E-value=1.3e+02 Score=32.96 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=83.9
Q ss_pred HHHhhcCCCcchHhhHHHHHHH---HHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHH----HHhCCChhhHHHHHHHHH
Q psy10039 6 LLHLLMEENTNELRRRDLALFL---REYCQFSQNLQPQAKENFYKTLSSLGILPALEV----VLSAEDIATKNAAIDILN 78 (450)
Q Consensus 6 LF~~l~~~~~~~~~rrd~v~FL---~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~----~L~~~d~~ir~~atdIL~ 78 (450)
.|.-+.++++...-|.-++.|+ +..+. +. ++......+..+-.|+.+.++. .-..++...|..+-+.|-
T Consensus 324 ~~~~l~~~~~~~klk~~~l~F~~~~~~~~~---~~-~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 324 VFDGLYSDNTNSKLKSLALQFIRGSSWIFK---HI-SPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HhccccCCccccccchhcchhhhcchHHhh---hc-CHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 3445556666667788889999 44443 33 2456778888888899998841 234568889999999999
Q ss_pred HHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcC
Q psy10039 79 FIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILID 139 (450)
Q Consensus 79 ~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLD 139 (450)
.|.-.+|.++.+ +..|+..|.+-| .+.++ .++.-+-|||-.|+-
T Consensus 400 ~L~~~~p~l~~~--------------d~~li~~LF~sL-~~~~~--evr~sIqeALssl~~ 443 (501)
T PF13001_consen 400 LLAKRAPSLFSK--------------DLSLIEFLFDSL-EDESP--EVRVSIQEALSSLAP 443 (501)
T ss_pred HHHccCcccccc--------------cHHHHHHHHHHh-hCcch--HHHHHHHHHHHHHHH
Confidence 999999998632 466778888888 55566 669999999998884
No 81
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=27.37 E-value=6.6e+02 Score=25.37 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=90.9
Q ss_pred chHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHh-CCChhhHHHHHHHHHHHHhhChhHHHHHHHH
Q psy10039 16 NELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLS-AEDIATKNAAIDILNFIIEFSPSFIRDYTLQ 94 (450)
Q Consensus 16 ~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~-~~d~~ir~~atdIL~~iie~dp~lvR~~~~~ 94 (450)
.+...-.++..||=||-+ -|++|.-|= +++-..++=..|. ...+.+.+++.|.|+.++--+|.-.|.| +
T Consensus 104 ~~~li~~aL~vLQGl~LL----Hp~Sr~lF~----r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~F--E 173 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLL----HPPSRKLFH----REQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDF--E 173 (257)
T ss_pred hhHHHHHHHHHHHHHHHc----CchHHHHHh----hhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHH--H
Confidence 334466678899999976 567666543 4444556656663 3578999999999999999999999987 4
Q ss_pred hhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccC-------------CchhHHHHHHHHHh
Q psy10039 95 QAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSI-------------NKTEKCEFLNYFYK 161 (450)
Q Consensus 95 q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~-------------~~~e~~~fl~~FY~ 161 (450)
+.+ + +.+++.+ +.++...=-++..+.|-|--.|=||.....+ ...||.++|.-++.
T Consensus 174 ~~~-------G---l~~v~~l-lk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~~~~~~~~~~~~~t~~eKq~ll~~~~~ 242 (257)
T PF08045_consen 174 ELN-------G---LSTVCSL-LKSKSTDRELRLKCIEFLYFYLMPETPSIPPGSSSSGSEGRATKTTEEKQELLGRYLS 242 (257)
T ss_pred HhC-------C---HHHHHHH-HccccccHHHhHHHHHHHHHHHcccCCCCCcccccccCCCcCcccHHHHHHHHHHhcc
Confidence 332 2 3344443 3444333356889999999999987543311 12478889988887
Q ss_pred hhHHHhccccc
Q psy10039 162 YSIHLLMDPLL 172 (450)
Q Consensus 162 ~~~~~L~~PL~ 172 (450)
+ ++-|+.-|.
T Consensus 243 ~-vd~Lv~dL~ 252 (257)
T PF08045_consen 243 N-VDDLVEDLN 252 (257)
T ss_pred c-HHHHHHHHH
Confidence 7 466655443
No 82
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=27.33 E-value=4.1e+02 Score=31.25 Aligned_cols=111 Identities=21% Similarity=0.214 Sum_probs=0.0
Q ss_pred hHHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHH
Q psy10039 2 AEKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFII 81 (450)
Q Consensus 2 ~~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~ii 81 (450)
+..+|.+.|+ +.+..-|+-++.-|-++. ..+.++.|.-+|+++|..+|..|.+-|..+.
T Consensus 622 ~~~~L~~~L~--D~d~~VR~~Av~~L~~~~-------------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 622 SVAELAPYLA--DPDPGVRRTAVAVLTETT-------------------PPGFGPALVAALGDGAAAVRRAAAEGLRELV 680 (897)
T ss_pred hHHHHHHHhc--CCCHHHHHHHHHHHhhhc-------------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q ss_pred hhChh-------------HHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCC
Q psy10039 82 EFSPS-------------FIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPD 141 (450)
Q Consensus 82 e~dp~-------------lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~ 141 (450)
+..+. .||...++.-. .....-...|++ ++.|.|| .++...+.+|..+=+++
T Consensus 681 ~~~~~~~~L~~~L~~~d~~VR~~A~~aL~-----~~~~~~~~~l~~-~L~D~d~--~VR~~Av~aL~~~~~~~ 745 (897)
T PRK13800 681 EVLPPAPALRDHLGSPDPVVRAAALDVLR-----ALRAGDAALFAA-ALGDPDH--RVRIEAVRALVSVDDVE 745 (897)
T ss_pred hccCchHHHHHHhcCCCHHHHHHHHHHHH-----hhccCCHHHHHH-HhcCCCH--HHHHHHHHHHhcccCcH
No 83
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=25.92 E-value=1.6e+02 Score=26.84 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=33.1
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHHHh-hCchHHHHHHhhhcCCCCcchhhHHHHHHHHH
Q psy10039 232 FLVLSSLRFMRKIIAMKDDFYNRYIIK-GHLFQPVIDTFNRNKGRYNLLDSAVLELFEYI 290 (450)
Q Consensus 232 ~L~L~AlRf~R~iI~l~Defy~ryiik-~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~I 290 (450)
-+...+|||+|+++.-.. -..++++ .+.+..|...+.. .+--+--.++|++-+|
T Consensus 131 ~~~~~~l~Clkal~n~~~--G~~~v~~~~~~v~~i~~~L~s---~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 131 DIEHECLRCLKALMNTKY--GLEAVLSHPDSVNLIALSLDS---PNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHHHTSSHH--HHHHHHCSSSHHHHHHHT--T---TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHH--HHHHHHcCcHHHHHHHHHHCC---CCHHHHHHHHHHHHHH
Confidence 477889999999987553 3455555 5566666555542 2223555667777655
No 84
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=25.77 E-value=1.2e+02 Score=25.82 Aligned_cols=39 Identities=8% Similarity=0.184 Sum_probs=33.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHhhChhH-HHHHHHH
Q psy10039 56 PALEVVLSAEDIATKNAAIDILNFIIEFSPSF-IRDYTLQ 94 (450)
Q Consensus 56 ~vi~~~L~~~d~~ir~~atdIL~~iie~dp~l-vR~~~~~ 94 (450)
--|.-||.|=.+.||.-++.+|-.++||-|.. ++++..+
T Consensus 14 ~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~k 53 (102)
T PF12333_consen 14 LYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVK 53 (102)
T ss_pred HHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHH
Confidence 35667899999999999999999999999999 6665544
No 85
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=25.30 E-value=4.1e+02 Score=24.06 Aligned_cols=110 Identities=12% Similarity=0.117 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHH
Q psy10039 189 QLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDT 268 (450)
Q Consensus 189 ~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~ 268 (450)
.+...|||++. ..+-. -++.++-+.+-+.++....+|-||-.+-+|+.===.-|+..+.+...+.-++.+
T Consensus 20 ~~ileicD~In----~~~~~------~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl 89 (139)
T cd03567 20 EAIQAFCEQIN----KEPEG------PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKL 89 (139)
T ss_pred HHHHHHHHHHH----cCCcc------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHH
Confidence 45567888863 22221 335566677778888888999999999999986667788999999999888887
Q ss_pred hhhc--CCCCcchhhHHHHHHHHHHhhChHHHHHHHHHHhHhhccCcc-chhhHHHHH
Q psy10039 269 FNRN--KGRYNLLDSAVLELFEYIKLEDIKVLCSHVVETYGDELESIH-YVQTFRSLR 323 (450)
Q Consensus 269 f~~n--~~R~NLlnSA~LElfe~Ir~eNik~Li~hlve~y~~~l~~i~-yv~tf~~L~ 323 (450)
+... |++. ...+|.-+..+++...+.|.... |..++..|+
T Consensus 90 ~~~k~~~~~~---------------~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~Lk 132 (139)
T cd03567 90 VSPKYLGSRT---------------SEKVKTKIIELLYSWTLELPHEPKIKEAYDMLK 132 (139)
T ss_pred hccccCCCCC---------------CHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 7432 1121 24556666677777777776543 334444443
No 86
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=25.25 E-value=1.3e+02 Score=29.00 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhh-hhhhhhHHHHHHHhhc
Q psy10039 185 YHNAQLLGVILELLSFCVEHHSYHIKN-FVLNKDLLRKVLVLMK 227 (450)
Q Consensus 185 ~~~~~ll~~l~eLL~Fcv~~H~~riK~-fil~~~ll~rVl~Ll~ 227 (450)
.....+|..+|++|+..+++|+.++.. +=+=.+++...+..+.
T Consensus 49 ~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL~~l~ 92 (223)
T PF10441_consen 49 DSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRLLRCLF 92 (223)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHHHHHHH
Confidence 355789999999999999999988843 3233455555555444
No 87
>KOG1062|consensus
Probab=25.17 E-value=1.7e+02 Score=34.06 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=49.1
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q psy10039 56 PALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILK 135 (450)
Q Consensus 56 ~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk 135 (450)
++|.--|...|..+|=.|.+.|...|..||+.|..| ..+.+.- +.|+|+ .++.-.+|.+-
T Consensus 316 niLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-------------r~tIleC-----L~DpD~--SIkrralELs~ 375 (866)
T KOG1062|consen 316 NILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-------------RSTILEC-----LKDPDV--SIKRRALELSY 375 (866)
T ss_pred HHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-------------HHHHHHH-----hcCCcH--HHHHHHHHHHH
Confidence 345556777888888888888999999999988554 1222222 466665 66888999999
Q ss_pred HhcCCCCC
Q psy10039 136 ILIDPDNM 143 (450)
Q Consensus 136 ~LLDp~~m 143 (450)
.|.+..|.
T Consensus 376 ~lvn~~Nv 383 (866)
T KOG1062|consen 376 ALVNESNV 383 (866)
T ss_pred HHhccccH
Confidence 98887663
No 88
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=24.69 E-value=1.7e+02 Score=30.90 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=44.6
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHH
Q psy10039 27 LREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYT 92 (450)
Q Consensus 27 L~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~ 92 (450)
|.-++.+-++.. +.-+-..|-+ |++++=-+|..+|..+|..+.++|..+++.+|..+-+|+
T Consensus 344 L~ALs~ll~~vP---~~vl~~~l~~--LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 344 LTALSHLLKNVP---KSVLLPELPT--LLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL 404 (415)
T ss_pred HHHHHHHHhhCC---HHHHHHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 444444555443 2233333333 789999999999999999999999999999999987653
No 89
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=24.46 E-value=70 Score=31.96 Aligned_cols=53 Identities=19% Similarity=0.502 Sum_probs=33.5
Q ss_pred HhhCchHHHHHHhhhcC-----CCCcchhhHHHHHHHHHHhh----------ChHHHHHHHHHHhHhhccCcc
Q psy10039 257 IKGHLFQPVIDTFNRNK-----GRYNLLDSAVLELFEYIKLE----------DIKVLCSHVVETYGDELESIH 314 (450)
Q Consensus 257 ik~nLf~PIl~~f~~n~-----~R~NLlnSA~LElfe~Ir~e----------Nik~Li~hlve~y~~~l~~i~ 314 (450)
++.|+|.| +-|.... +.||= +++.++..+|||.- |+.+|+.-|| |-.+++++.
T Consensus 183 ~~~n~fp~--kn~~~gpnv~~~P~y~~-ypT~~~I~n~vr~~ni~~v~L~l~n~~sL~dvLv--yDgKvEK~~ 250 (301)
T COG5111 183 LEKNLFPR--KNFEEGPNVFYAPKYED-YPTLEDIMNYVRNVNILSVPLRLDNLESLADVLV--YDGKVEKLH 250 (301)
T ss_pred HHhccCCc--cchhcCCccccCCccCC-CccHHHHHHHHHhceeeeccccHHHHHHHhHhee--ecCeeeeec
Confidence 45666666 3232222 44442 68999999999975 5566776665 666666664
No 90
>PF05536 Neurochondrin: Neurochondrin
Probab=24.21 E-value=1e+03 Score=26.47 Aligned_cols=202 Identities=14% Similarity=0.208 Sum_probs=119.1
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhC-------CChhhHHHHHHH
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSA-------EDIATKNAAIDI 76 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~-------~d~~ir~~atdI 76 (450)
++-...|+... ++.|-=|..++.-+|. +.......|...|.++ | ++-+.--|+. +....+.+|+-|
T Consensus 8 ~~c~~lL~~~~--D~~rfagL~lvtk~~~-~~~~~~~~~~~v~~ai---g-~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 8 EKCLSLLKSAD--DTERFAGLLLVTKLLD-ADDEDSQTRRRVFEAI---G-FKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHhccCC--cHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhc---C-hhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 34455666665 7889999999998888 5554445555566443 3 4555666665 345678999999
Q ss_pred HHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHH
Q psy10039 77 LNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFL 156 (450)
Q Consensus 77 L~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl 156 (450)
|.++.- ||.+.++.-+-. -+-+|++.+....+ .++-.-..++|..+.-.+ . -+..|+
T Consensus 81 L~~f~~-~~~~a~~~~~~~------------~IP~Lle~l~~~s~--~~~v~dalqcL~~Ias~~------~--G~~aLl 137 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMVS------------RIPLLLEILSSSSD--LETVDDALQCLLAIASSP------E--GAKALL 137 (543)
T ss_pred HHHHcC-ChhhhcCHHHHH------------HHHHHHHHHHcCCc--hhHHHHHHHHHHHHHcCc------H--hHHHHH
Confidence 999888 888876653322 14445565656544 255666667776666221 1 112222
Q ss_pred HHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHH
Q psy10039 157 NYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLS 236 (450)
Q Consensus 157 ~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~ 236 (450)
+ ...++.|+.-+... ... -....+++-.++-...++... ++.-.-..++.+++......++-.+..
T Consensus 138 ~---~g~v~~L~ei~~~~---------~~~-~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfe 203 (543)
T PF05536_consen 138 E---SGAVPALCEIIPNQ---------SFQ-MEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFE 203 (543)
T ss_pred h---cCCHHHHHHHHHhC---------cch-HHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 2 34556665544331 011 122223333333334433322 444444577788888888888888888
Q ss_pred HHHHHHHHhcCCh
Q psy10039 237 SLRFMRKIIAMKD 249 (450)
Q Consensus 237 AlRf~R~iI~l~D 249 (450)
++.|+-.++...+
T Consensus 204 ll~~L~~~L~~~~ 216 (543)
T PF05536_consen 204 LLEFLSAFLPRSP 216 (543)
T ss_pred HHHHHHHhcCcCC
Confidence 8888888877764
No 91
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=24.16 E-value=1.2e+02 Score=22.14 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q psy10039 68 ATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKI 136 (450)
Q Consensus 68 ~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~ 136 (450)
.+|..|+-.|-.+.++-+..++.+. ..++..|+..| .|.++ .++.....+|-.
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~-------------~~~~~~L~~~L-~d~~~--~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYL-------------PELLPALIPLL-QDDDD--SVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHH-------------HHHHHHHHHHT-TSSSH--HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHH-------------HHHHHHHHHHH-cCCCH--HHHHHHHHHHhc
Confidence 5788888888888888888877752 23455666555 66665 778888777753
No 92
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=23.39 E-value=76 Score=29.59 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=30.3
Q ss_pred HHHHHHhhChHHHHHHHHHHhHhhcc--CccchhhHHHHHHHH
Q psy10039 286 LFEYIKLEDIKVLCSHVVETYGDELE--SIHYVQTFRSLRLKY 326 (450)
Q Consensus 286 lfe~Ir~eNik~Li~hlve~y~~~l~--~i~yv~tf~~L~~ry 326 (450)
|.+|=+..+.+.||.||+++|..-.+ ....+.|..-+..-|
T Consensus 8 F~~FR~~~~y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLY 50 (159)
T PF04838_consen 8 FKEFRRNKDYKELIDFLITNYPKNVKNKTFNFANTGHLFHSLY 50 (159)
T ss_pred HHHHHHhcCHHHHHHHHHhhcccccccCeeecCCCchhhhhhh
Confidence 34566678999999999999999887 456676655444334
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=22.80 E-value=4.7e+02 Score=22.12 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCc
Q psy10039 55 LPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDP 122 (450)
Q Consensus 55 ~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~ 122 (450)
++.+=-.+.++|..||-.|+|-|..|..+-...+=.|. .-+++.|++ ++.|+|+
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-------------~~IF~~L~k-l~~D~d~ 82 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-------------NEIFDALCK-LSADPDE 82 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH-HHcCCch
Confidence 44555788999999999999999999887544332221 224566665 5677776
No 94
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=21.65 E-value=1.3e+02 Score=28.70 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHHhh-ChhHHHHHHHHhhhhc--ccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCC-
Q psy10039 68 ATKNAAIDILNFIIEF-SPSFIRDYTLQQAACI--SREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNM- 143 (450)
Q Consensus 68 ~ir~~atdIL~~iie~-dp~lvR~~~~~q~~~~--s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m- 143 (450)
++|..|.-.|.+++.+ ++-.+-+|.-.=--.. .......+|+. .++.|++| .++.-...+|..|||-...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt----~il~Dp~~--kvR~aA~~~l~~lL~gsk~~ 74 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLT----CILKDPSP--KVRAAAASALAALLEGSKPF 74 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhH----HHHcCCch--hHHHHHHHHHHHHHHccHHH
Confidence 5899999999999999 9988877754321100 01222445444 45677766 8899999999999985210
Q ss_pred CccCC--chhHHHHHHHHHhh--hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHH
Q psy10039 144 LSSIN--KTEKCEFLNYFYKY--SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLL 219 (450)
Q Consensus 144 ~~~~~--~~e~~~fl~~FY~~--~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll 219 (450)
..-+. +...-.|..+.-.= .+..|-.-|+..-. .-....++.+++.-|+-.|+.-||+- +..+++
T Consensus 75 L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~-------~E~~~~~l~q~lK~la~Lv~~tPY~r----L~~~ll 143 (182)
T PF13251_consen 75 LAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQ-------AEKSPPVLTQLLKCLAVLVQATPYHR----LPPGLL 143 (182)
T ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHh-------cccccHHHHHHHHHHHHHHccCChhh----cCHhHH
Confidence 00000 00011232221110 01111111111000 11234578899999999999999863 234555
Q ss_pred HH----HHHhhccCCcchhHHHHHHHHHHhcCC
Q psy10039 220 RK----VLVLMKSCHTFLVLSSLRFMRKIIAMK 248 (450)
Q Consensus 220 ~r----Vl~Ll~~~~K~L~L~AlRf~R~iI~l~ 248 (450)
.+ |..++..++.-++++|+=++-.+++..
T Consensus 144 ~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 144 TEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 44 556778888889999999999888764
No 95
>KOG1991|consensus
Probab=20.82 E-value=1.5e+03 Score=27.29 Aligned_cols=187 Identities=16% Similarity=0.123 Sum_probs=101.8
Q ss_pred CcchHhhHHHHHH-HHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh---hChhHHH
Q psy10039 14 NTNELRRRDLALF-LREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE---FSPSFIR 89 (450)
Q Consensus 14 ~~~~~~rrd~v~F-L~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie---~dp~lvR 89 (450)
.....|++||.++ +--+| .-|- |.+-|++-..+=|.+-+-..|+++---+|+-|++++..+-+ .||+.++
T Consensus 428 ~~~~~rqkdGAL~~vgsl~---~~L~---K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~ 501 (1010)
T KOG1991|consen 428 PNKNPRQKDGALRMVGSLA---SILL---KKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS 501 (1010)
T ss_pred CccChhhhhhHHHHHHHHH---HHHc---cCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH
Confidence 3355677777654 33344 2221 23334444444333444456688888899999999999874 3676665
Q ss_pred HHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhcc
Q psy10039 90 DYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMD 169 (450)
Q Consensus 90 ~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~ 169 (450)
+. +....+.|.+| .+|.++++.+-||+.++-... +.++++.-+=...|..|++
T Consensus 502 ~a-----------------le~t~~~l~~d--~~lPV~VeAalALq~fI~~~~--------~~~e~~~~hvp~~mq~lL~ 554 (1010)
T KOG1991|consen 502 EA-----------------LELTHNCLLND--NELPVRVEAALALQSFISNQE--------QADEKVSAHVPPIMQELLK 554 (1010)
T ss_pred HH-----------------HHHHHHHhccC--CcCchhhHHHHHHHHHHhcch--------hhhhhHhhhhhHHHHHHHH
Confidence 53 34455677774 458999999999999996421 2334555444444555443
Q ss_pred ccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccC------CcchhHHHHHHHHH
Q psy10039 170 PLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSC------HTFLVLSSLRFMRK 243 (450)
Q Consensus 170 PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~------~K~L~L~AlRf~R~ 243 (450)
=.-.- .. ..|=.-+=+++|-+-++=+-.- .=|-++|....++++... .--=.++|+-|+||
T Consensus 555 L~ne~----En-------d~Lt~vme~iV~~fseElsPfA--~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 555 LSNEV----EN-------DDLTNVMEKIVCKFSEELSPFA--VELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred HHHhc----ch-------hHHHHHHHHHHHHHHHhhchhH--HHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 22111 10 1111112233344443322111 134566677666665521 11134778778887
Q ss_pred Hhc
Q psy10039 244 IIA 246 (450)
Q Consensus 244 iI~ 246 (450)
|..
T Consensus 622 i~T 624 (1010)
T KOG1991|consen 622 IST 624 (1010)
T ss_pred HHH
Confidence 643
No 96
>PRK09687 putative lyase; Provisional
Probab=20.24 E-value=8.8e+02 Score=24.30 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=51.7
Q ss_pred hHHHHHHhhcCCCcchHhhHHHHHHHHHH---------HHhhhcCCchhHHHHHHHHHhCC--------CHHHHHH-HHh
Q psy10039 2 AEKDLLHLLMEENTNELRRRDLALFLREY---------CQFSQNLQPQAKENFYKTLSSLG--------ILPALEV-VLS 63 (450)
Q Consensus 2 ~~~eLF~~l~~~~~~~~~rrd~v~FL~q~---------c~laK~LQ~~~r~~ff~~Lv~~G--------L~~vi~~-~L~ 63 (450)
++++|+..|.+++. .-|..++.-|+++ ..+.++=.+..|..-=..|...| .++.+.- +++
T Consensus 24 ~~~~L~~~L~d~d~--~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~ 101 (280)
T PRK09687 24 NDDELFRLLDDHNS--LKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE 101 (280)
T ss_pred cHHHHHHHHhCCCH--HHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc
Confidence 45677788866553 3455566655542 23334445667777777788777 5777764 478
Q ss_pred CCChhhHHHHHHHHHHH
Q psy10039 64 AEDIATKNAAIDILNFI 80 (450)
Q Consensus 64 ~~d~~ir~~atdIL~~i 80 (450)
++|..||..++..|-.+
T Consensus 102 D~d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 102 DKSACVRASAINATGHR 118 (280)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 88999999888888776
Done!