Query psy10039
Match_columns 450
No_of_seqs 170 out of 222
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 16:18:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 98.2 0.00035 1.2E-08 63.7 21.8 220 3-271 4-223 (252)
2 1xqr_A HSPBP1 protein; armadil 98.0 0.00097 3.3E-08 65.7 23.2 199 3-247 30-239 (296)
3 2jdq_A Importin alpha-1 subuni 97.8 0.0027 9.2E-08 63.1 22.1 220 5-271 68-287 (450)
4 4db8_A Armadillo-repeat protei 97.8 0.0037 1.3E-07 57.5 20.5 218 4-271 15-233 (252)
5 4b8j_A Importin subunit alpha- 97.7 0.012 4.1E-07 60.6 24.6 220 4-271 120-339 (528)
6 1wa5_B Importin alpha subunit; 97.6 0.0067 2.3E-07 62.7 21.9 235 4-290 218-455 (530)
7 2jdq_A Importin alpha-1 subuni 97.6 0.021 7.2E-07 56.6 24.5 221 2-270 21-244 (450)
8 3tpo_A Importin subunit alpha- 97.6 0.011 3.6E-07 61.8 22.8 199 52-291 250-448 (529)
9 4b8j_A Importin subunit alpha- 97.5 0.007 2.4E-07 62.3 20.9 236 4-290 205-441 (528)
10 3ul1_B Importin subunit alpha- 97.5 0.0099 3.4E-07 61.9 22.1 199 52-291 231-429 (510)
11 4hxt_A De novo protein OR329; 97.5 0.0097 3.3E-07 54.0 18.7 201 4-252 47-247 (252)
12 1wa5_B Importin alpha subunit; 97.4 0.031 1.1E-06 57.7 23.3 221 4-272 133-353 (530)
13 4db6_A Armadillo repeat protei 97.3 0.037 1.3E-06 49.3 19.7 184 48-271 7-191 (210)
14 4db6_A Armadillo repeat protei 97.2 0.047 1.6E-06 48.6 20.0 192 6-245 17-208 (210)
15 3tpo_A Importin subunit alpha- 97.2 0.029 9.8E-07 58.5 20.6 233 4-270 79-345 (529)
16 4db8_A Armadillo-repeat protei 97.1 0.048 1.6E-06 49.9 19.1 193 4-245 57-250 (252)
17 3ul1_B Importin subunit alpha- 96.7 0.057 2E-06 56.1 18.2 238 2-270 58-326 (510)
18 2z6h_A Catenin beta-1, beta-ca 96.2 0.66 2.3E-05 49.2 22.6 233 6-289 229-484 (644)
19 4gmo_A Putative uncharacterize 96.1 0.16 5.5E-06 55.1 17.5 187 46-260 28-227 (684)
20 1jdh_A Beta-catenin; beta-cate 96.1 1.4 4.8E-05 44.4 25.2 232 4-287 104-335 (529)
21 2z6h_A Catenin beta-1, beta-ca 96.0 1.5 5E-05 46.5 24.3 225 4-280 101-325 (644)
22 1jdh_A Beta-catenin; beta-cate 95.8 0.41 1.4E-05 48.4 18.0 185 49-272 13-197 (529)
23 2z6g_A B-catenin; FULL-length, 95.7 0.26 9E-06 54.2 17.3 229 5-275 196-456 (780)
24 1w63_A Adapter-related protein 95.6 0.47 1.6E-05 50.7 18.5 221 40-293 122-397 (618)
25 3grl_A General vesicular trans 95.6 0.55 1.9E-05 51.2 18.8 218 3-295 23-244 (651)
26 2z6g_A B-catenin; FULL-length, 95.4 1.3 4.4E-05 48.7 21.3 212 4-271 118-329 (780)
27 1ibr_B P95, importin beta-1 su 95.0 0.52 1.8E-05 46.4 15.3 209 6-247 177-396 (462)
28 3now_A UNC-45 protein, SD10334 94.9 0.29 9.9E-06 54.7 14.4 188 47-271 489-676 (810)
29 3nmw_A APC variant protein; AR 94.6 1.5 5E-05 43.9 17.7 217 17-271 98-316 (354)
30 1w63_A Adapter-related protein 94.4 2.1 7.3E-05 45.5 19.4 173 57-311 317-493 (618)
31 1xqr_A HSPBP1 protein; armadil 94.1 2.5 8.7E-05 41.1 17.8 183 68-291 55-237 (296)
32 3nmz_A APC variant protein; pr 94.0 3.1 0.0001 43.2 19.1 214 18-271 215-432 (458)
33 3b2a_A TON_1937, putative unch 93.9 0.47 1.6E-05 46.0 11.6 150 51-247 31-180 (265)
34 1ibr_B P95, importin beta-1 su 93.4 5.1 0.00017 39.2 18.6 58 189-247 232-289 (462)
35 1xm9_A Plakophilin 1; armadill 92.9 4.6 0.00016 41.1 18.0 207 1-245 2-219 (457)
36 2qk2_A LP04448P; mini spindles 92.6 6 0.0002 36.1 19.1 194 5-256 19-216 (242)
37 4fdd_A Transportin-1; heat rep 92.6 9.6 0.00033 41.4 21.1 182 53-269 215-409 (852)
38 1qgr_A Protein (importin beta 92.5 13 0.00044 39.8 24.0 230 6-270 177-418 (876)
39 4fdd_A Transportin-1; heat rep 92.1 2.3 7.8E-05 46.4 15.4 117 189-311 601-721 (852)
40 1upk_A MO25 protein; transfera 91.8 4.6 0.00016 40.7 15.7 177 39-243 64-280 (341)
41 3now_A UNC-45 protein, SD10334 91.3 6.6 0.00023 43.8 18.0 153 109-290 625-780 (810)
42 3opb_A SWI5-dependent HO expre 89.9 7 0.00024 43.5 16.4 227 47-290 451-727 (778)
43 2bpt_A Importin beta-1 subunit 89.3 25 0.00086 37.4 24.9 217 7-256 185-409 (861)
44 2bpt_A Importin beta-1 subunit 88.8 27 0.00093 37.2 25.3 242 5-290 415-666 (861)
45 2qk2_A LP04448P; mini spindles 88.6 6.6 0.00022 35.8 13.0 162 60-269 22-185 (242)
46 1u6g_C TIP120 protein, CAND1; 88.1 19 0.00065 40.8 19.0 228 4-286 9-238 (1230)
47 1qgr_A Protein (importin beta 88.0 31 0.0011 36.8 20.8 277 5-311 412-701 (876)
48 3nmz_A APC variant protein; pr 87.8 10 0.00035 39.3 15.1 206 48-290 184-407 (458)
49 2vgl_A Adaptor protein complex 86.6 36 0.0012 36.2 22.3 244 5-294 150-417 (621)
50 3nmw_A APC variant protein; AR 86.5 11 0.00039 37.4 14.2 232 13-290 42-291 (354)
51 2vgl_B AP-2 complex subunit be 84.4 17 0.00057 38.2 15.0 82 41-140 102-190 (591)
52 1u6g_C TIP120 protein, CAND1; 83.7 42 0.0014 38.0 18.8 201 54-304 87-299 (1230)
53 1xm9_A Plakophilin 1; armadill 82.1 43 0.0015 33.8 16.6 176 55-271 4-196 (457)
54 2vgl_B AP-2 complex subunit be 81.0 57 0.0019 34.1 18.1 69 4-88 16-84 (591)
55 3l6x_A Catenin delta-1; cateni 80.8 38 0.0013 36.2 16.2 158 109-291 310-476 (584)
56 3tt9_A Plakophilin-2; cell adh 80.8 31 0.001 32.4 13.8 138 1-172 8-145 (233)
57 3grl_A General vesicular trans 78.2 11 0.00039 41.0 11.0 210 51-292 120-343 (651)
58 3ltm_A Alpha-REP4; protein eng 78.1 34 0.0012 29.8 13.2 26 3-30 21-46 (211)
59 2vgl_A Adaptor protein complex 76.3 58 0.002 34.6 15.9 80 220-326 444-530 (621)
60 2qk1_A Protein STU2; STU2P, XM 74.0 11 0.00037 35.4 8.6 74 3-83 148-221 (249)
61 1b3u_A Protein (protein phosph 67.3 1.1E+02 0.0036 30.7 17.2 34 52-85 86-119 (588)
62 3l6x_A Catenin delta-1; cateni 62.8 61 0.0021 34.6 12.4 84 2-95 49-132 (584)
63 1oyz_A Hypothetical protein YI 60.2 85 0.0029 28.5 11.6 127 2-137 24-186 (280)
64 3ltj_A Alpharep-4; protein eng 59.6 85 0.0029 27.0 12.5 128 4-140 17-168 (201)
65 2of3_A ZYG-9; multifunctional 59.0 79 0.0027 30.4 11.4 172 16-244 59-234 (266)
66 2qk1_A Protein STU2; STU2P, XM 57.2 1.2E+02 0.0041 28.0 16.4 191 6-245 21-219 (249)
67 3dad_A FH1/FH2 domain-containi 56.8 1.6E+02 0.0056 29.4 14.4 173 77-321 142-332 (339)
68 4ffb_C Protein STU2; tubulin f 49.3 1.1E+02 0.0038 28.2 10.6 184 18-244 24-210 (278)
69 1w9c_A CRM1 protein, exportin 48.5 69 0.0024 31.8 9.2 66 11-83 130-197 (321)
70 1b3u_A Protein (protein phosph 47.1 2.3E+02 0.0078 28.2 19.9 70 52-139 202-271 (588)
71 3tt9_A Plakophilin-2; cell adh 47.1 71 0.0024 29.9 8.7 88 208-297 43-130 (233)
72 3tjz_B Coatomer subunit gamma; 46.5 28 0.00094 35.0 6.0 66 53-138 139-204 (355)
73 3ltj_A Alpharep-4; protein eng 43.5 1.5E+02 0.0053 25.2 10.7 52 29-80 18-72 (201)
74 2fv2_A RCD1 required for cell 43.5 89 0.003 30.3 8.8 79 190-269 69-154 (268)
75 3ltm_A Alpha-REP4; protein eng 43.2 1.6E+02 0.0055 25.3 15.3 45 36-80 30-77 (211)
76 1te4_A Conserved protein MTH18 43.1 91 0.0031 25.3 7.9 24 109-135 106-129 (131)
77 2x1g_F Cadmus; transport prote 39.6 4.1E+02 0.014 29.0 23.7 149 15-171 256-415 (971)
78 1oyz_A Hypothetical protein YI 34.1 2.6E+02 0.0089 25.2 20.5 46 35-80 33-81 (280)
79 4gmo_A Putative uncharacterize 32.4 1.3E+02 0.0045 32.1 9.0 64 208-271 66-130 (684)
80 3eg5_B Protein diaphanous homo 31.1 1.1E+02 0.0037 30.8 7.6 114 16-140 133-247 (383)
81 2jby_A M11L protein; apoptosis 31.0 58 0.002 28.3 4.7 76 6-82 22-105 (145)
82 1wa5_C Importin alpha RE-expor 30.5 5.7E+02 0.02 28.0 19.6 58 189-248 261-323 (960)
83 3a6p_A Exportin-5; exportin-5, 30.1 6.7E+02 0.023 28.7 16.5 36 211-248 241-278 (1204)
84 3m1i_C Exportin-1; heat repeat 27.8 3.5E+02 0.012 30.2 11.8 65 11-83 812-879 (1049)
85 2xpp_A IWS1, ECU08_0440; trans 24.9 1.7E+02 0.0059 25.6 6.8 51 24-80 38-94 (145)
86 3vld_A DNA mismatch repair pro 24.7 6.3E+02 0.021 26.5 15.8 91 105-220 151-245 (500)
87 3b2a_A TON_1937, putative unch 23.3 69 0.0024 31.0 4.2 82 215-303 73-156 (265)
88 3nfq_A Transcription factor IW 22.0 2.6E+02 0.0089 25.2 7.5 51 24-80 53-109 (170)
89 2hv8_D RAB11 family-interactin 21.0 84 0.0029 24.1 3.4 47 32-88 15-61 (64)
90 3zyq_A Hepatocyte growth facto 20.9 4.9E+02 0.017 23.9 10.7 127 160-325 9-139 (226)
91 4hat_C Exportin-1; heat repeat 20.7 9.4E+02 0.032 27.1 16.2 60 12-82 813-878 (1023)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.18 E-value=0.00035 Score=63.70 Aligned_cols=220 Identities=13% Similarity=0.110 Sum_probs=159.3
Q ss_pred HHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 3 EKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 3 ~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
.+.|...+++++ .+-|..++..|..++.-.. ..-+.+++.|.++.+--.|++++..+|..++.+|..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~--------~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPA--------SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCH--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCc--------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 467888888776 6778889888887765432 344567788999999999999999999999999999998
Q ss_pred hChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhh
Q psy10039 83 FSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKY 162 (450)
Q Consensus 83 ~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~ 162 (450)
+++...+. +.+.. .+..|++.|- +.++ .++.....+|..|.... ...+..+++ ..
T Consensus 74 ~~~~~~~~-~~~~~-----------~i~~l~~ll~-~~~~--~v~~~a~~~L~~l~~~~-------~~~~~~~~~---~~ 128 (252)
T 4hxt_A 74 GPDEAIKA-IVDAG-----------GVEVLVKLLT-STDS--EVQKEAARALANIASGP-------DEAIKAIVD---AG 128 (252)
T ss_dssp SCHHHHHH-HHHTT-----------HHHHHHHHTT-CSSH--HHHHHHHHHHHHHTTSC-------HHHHHHHHH---TT
T ss_pred CChHHHHH-HHHCC-----------CHHHHHHHHc-CCCH--HHHHHHHHHHHHHHcCC-------HHHHHHHHH---CC
Confidence 87765443 33322 2555666554 4555 77999999999998421 111222222 23
Q ss_pred hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHH
Q psy10039 163 SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMR 242 (450)
Q Consensus 163 ~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R 242 (450)
.++.|+.-|.+ .+..+....+..|+.+..+++-. +..+...+++..+..++.+.+.-++..|++++.
T Consensus 129 ~i~~L~~~l~~------------~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 195 (252)
T 4hxt_A 129 GVEVLVKLLTS------------TDSEVQKEAARALANIASGPDEA-IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 195 (252)
T ss_dssp HHHHHHHHTTC------------SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHcC------------CCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56666544432 11345566777777766655544 346778999999999999988889999999999
Q ss_pred HHhcCChhHHHHHHHhhCchHHHHHHhhh
Q psy10039 243 KIIAMKDDFYNRYIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 243 ~iI~l~Defy~ryiik~nLf~PIl~~f~~ 271 (450)
++.. .+.-..+.+++.+++.+++.++..
T Consensus 196 ~l~~-~~~~~~~~l~~~~~i~~L~~ll~~ 223 (252)
T 4hxt_A 196 NIAS-GPTSAIKAIVDAGGVEVLQKLLTS 223 (252)
T ss_dssp HHTT-SBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHc-CCHHHHHHHHHCCCHHHHHHHHCC
Confidence 9886 566678889999999999987753
No 2
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.04 E-value=0.00097 Score=65.74 Aligned_cols=199 Identities=15% Similarity=0.182 Sum_probs=140.4
Q ss_pred HHHHHHhhcCC----------CcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHH-HHhCCChhhHH
Q psy10039 3 EKDLLHLLMEE----------NTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEV-VLSAEDIATKN 71 (450)
Q Consensus 3 ~~eLF~~l~~~----------~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~-~L~~~d~~ir~ 71 (450)
||+....|+++ +.+.+.|..+..-|.++|. ++. .. +.|++.|.++.+=. .|+++++.+|.
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~---~~d--na----~~~~~~G~l~~Lv~~lL~s~~~~vr~ 100 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE---NMD--NA----ADFCQLSGMHLLVGRYLEAGAAGLRW 100 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT---SHH--HH----HHHHHTTHHHHHHHTTTTCSSHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh---Chh--hH----HHHHHcCCHHHHHHHHHcCCCHHHHH
Confidence 78899999987 3455677777666666654 332 12 24577888888877 89999999999
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchh
Q psy10039 72 AAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTE 151 (450)
Q Consensus 72 ~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e 151 (450)
.|+-+|..|...+|. .|..+++..- +..|+++|-.+.++ .++...+-||-.|..- +.+.
T Consensus 101 ~Aa~~Lg~ia~~n~~-~~~~vv~~g~-----------l~~Ll~LL~~~~~~--~v~~~A~~ALsnl~~~-------~~~~ 159 (296)
T 1xqr_A 101 RAAQLIGTCSQNVAA-IQEQVLGLGA-----------LRKLLRLLDRDACD--TVRVKALFAISCLVRE-------QEAG 159 (296)
T ss_dssp HHHHHHHHHHTTCHH-HHHHHHHTTH-----------HHHHHHHHHHCSCH--HHHHHHHHHHHHHHTT-------CHHH
T ss_pred HHHHHHHHHHhCCHH-HHHHHHHCCC-----------HHHHHHHHccCCCH--HHHHHHHHHHHHHHcC-------CcHH
Confidence 999999999998886 4555665432 44555555555454 7788899999888742 1122
Q ss_pred HHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCc
Q psy10039 152 KCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHT 231 (450)
Q Consensus 152 ~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K 231 (450)
...|.+ ...++.|..-|-+ .+..+....|-.|+....+++- .+.++.+.++++.+..||.+++.
T Consensus 160 ~~~~~~---~ggi~~L~~lL~~------------~d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i~~Lv~LL~~~d~ 223 (296)
T 1xqr_A 160 LLQFLR---LDGFSVLMRAMQQ------------QVQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMVQQLVALVRTEHS 223 (296)
T ss_dssp HHHHHH---TTHHHHHHHHHHS------------SCHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHHHHHHHHHTSCCS
T ss_pred HHHHHH---CCCHHHHHHHHcC------------CCHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCHHHHHHHHcCCCh
Confidence 334444 2456655554422 1234555667777776666443 45678899999999999999998
Q ss_pred chhHHHHHHHHHHhcC
Q psy10039 232 FLVLSSLRFMRKIIAM 247 (450)
Q Consensus 232 ~L~L~AlRf~R~iI~l 247 (450)
-++-.|++.+.+|+..
T Consensus 224 ~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 224 PFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999975
No 3
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.82 E-value=0.0027 Score=63.11 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=151.0
Q ss_pred HHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhC
Q psy10039 5 DLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFS 84 (450)
Q Consensus 5 eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~d 84 (450)
.|...++++. +.+-|..++..|..+|.-.. ..-+.+++.|+++.+--.|+++++.+|..|+..|..|...+
T Consensus 68 ~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~--------~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~ 138 (450)
T 2jdq_A 68 RFVEFLKRKE-NCTLQFESAWVLTNIASGNS--------LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS 138 (450)
T ss_dssp HHHHHHTCTT-CHHHHHHHHHHHHHHHSSCH--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCC-CHHHHHHHHHHHHHHhcCCH--------HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC
Confidence 3445555542 45567777777777665321 12245678999999999999999999999999999999988
Q ss_pred hhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhH
Q psy10039 85 PSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSI 164 (450)
Q Consensus 85 p~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~ 164 (450)
+. .|..+.+.. .+..|++.|-.+.++ .++.+.+.+|..|....+-.. +.. +....+
T Consensus 139 ~~-~~~~~~~~~-----------~i~~L~~~l~~~~~~--~v~~~a~~~L~~l~~~~~~~~------~~~----~~~~~l 194 (450)
T 2jdq_A 139 TM-CRDYVLDCN-----------ILPPLLQLFSKQNRL--TMTRNAVWALSNLCRGKSPPP------EFA----KVSPCL 194 (450)
T ss_dssp HH-HHHHHHHTT-----------CHHHHHHHTTSCCCH--HHHHHHHHHHHHHHCCSSSCC------CGG----GTGGGH
T ss_pred HH-HHHHHHHCC-----------CHHHHHHHhcCCCCH--HHHHHHHHHHHHHhCCCCCCC------CHH----HHHHHH
Confidence 75 444444322 356667766544555 779999999999985321000 000 124455
Q ss_pred HHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHH
Q psy10039 165 HLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKI 244 (450)
Q Consensus 165 ~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~i 244 (450)
+.|+.-|.+ .+..+....|..|+.+..+.+-. +..+...+++..++.++...+.-++..|++.+.++
T Consensus 195 ~~L~~~l~~------------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 195 NVLSWLLFV------------SDTDVLADACWALSYLSDGPNDK-IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp HHHHHHTTC------------CCHHHHHHHHHHHHHHTSSSHHH-HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc------------CCHHHHHHHHHHHHHHHCCCcHH-HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 655543321 12345666777777766654333 44667788999999999988888999999999998
Q ss_pred hcCChhHHHHHHHhhCchHHHHHHhhh
Q psy10039 245 IAMKDDFYNRYIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 245 I~l~Defy~ryiik~nLf~PIl~~f~~ 271 (450)
..-.+ ...+.+++.+++.+++.++..
T Consensus 262 ~~~~~-~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 262 VTGDD-IQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp TTSCH-HHHHHHHTTTHHHHHHHHTTC
T ss_pred hhCCh-HHHHHHHHCccHHHHHHHHcC
Confidence 77544 456678888999999998865
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.76 E-value=0.0037 Score=57.49 Aligned_cols=218 Identities=13% Similarity=0.109 Sum_probs=152.0
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
.+++..|.+++ .+-|..++.-|..+..-. ...-+.+++.|.++.+--.|++++..+|..|+.+|..+...
T Consensus 15 ~~~~~~L~s~~--~~~~~~a~~~L~~~l~~~--------~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 15 PQMTQQLNSDD--MQEQLSATRKFSQILSDG--------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (252)
T ss_dssp HHHHHHHHSSC--SSHHHHHHHHHHHHHHHH--------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHcCC--------CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 46777787765 356778888886544331 12234678899999999999999999999999999999988
Q ss_pred ChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHH-hh
Q psy10039 84 SPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFY-KY 162 (450)
Q Consensus 84 dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY-~~ 162 (450)
++..... +.+. -.+..|+++|- +.++ .++.+...+|..|...+. .+ ...+. ..
T Consensus 85 ~~~~~~~-i~~~-----------g~i~~L~~lL~-~~~~--~v~~~a~~~L~~l~~~~~--------~~---~~~~~~~~ 138 (252)
T 4db8_A 85 GNEQIQA-VIDA-----------GALPALVQLLS-SPNE--QILQEALWALSNIASGGN--------EQ---IQAVIDAG 138 (252)
T ss_dssp CHHHHHH-HHHT-----------THHHHHHHGGG-CSCH--HHHHHHHHHHHHHTTSCH--------HH---HHHHHHTT
T ss_pred CHHHHHH-HHHc-----------CCHHHHHHHHc-CCCH--HHHHHHHHHHHHhhcCCc--------hH---HHHHHHCC
Confidence 8775433 3322 13566666554 4565 779999999999975421 11 12222 34
Q ss_pred hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHH
Q psy10039 163 SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMR 242 (450)
Q Consensus 163 ~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R 242 (450)
.++.|+.-|-+. +..+....+..|+-+..+.+.. +..+...+++..+..++...+.-++..|++.+.
T Consensus 139 ~i~~L~~lL~~~------------~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 205 (252)
T 4db8_A 139 ALPALVQLLSSP------------NEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALS 205 (252)
T ss_dssp HHHHHHHGGGCS------------CHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC------------CHHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 566666555221 1234445666666555544333 446778899999999999998889999999999
Q ss_pred HHhcCChhHHHHHHHhhCchHHHHHHhhh
Q psy10039 243 KIIAMKDDFYNRYIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 243 ~iI~l~Defy~ryiik~nLf~PIl~~f~~ 271 (450)
++.. .++-....+++.+.+.+++.++..
T Consensus 206 ~l~~-~~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 206 NIAS-GGNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp HHTT-SCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHhc-CCHHHHHHHHHCCcHHHHHHHhCC
Confidence 9885 455567788899999999987764
No 5
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.66 E-value=0.012 Score=60.64 Aligned_cols=220 Identities=15% Similarity=0.156 Sum_probs=155.2
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
..|...|++++ +.+-|..++..|..+|.-. ...-..+++.|.++.+--.|++++..+|..|+-.|..|...
T Consensus 120 ~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~--------~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 190 (528)
T 4b8j_A 120 PRFVQFLTRED-FPQLQFEAAWALTNIASGT--------SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD 190 (528)
T ss_dssp HHHHHHHTCTT-CHHHHHHHHHHHHHHHTSC--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC--------HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 34555565543 3566777777777766521 23345677889999999999999999999999999999987
Q ss_pred ChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhh
Q psy10039 84 SPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYS 163 (450)
Q Consensus 84 dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~ 163 (450)
+|. .|..+.... .+..|+++|..+.++ .++..++.+|..|..... .. ... ....+
T Consensus 191 ~~~-~~~~i~~~g-----------~l~~Ll~lL~~~~~~--~v~~~a~~~L~~L~~~~~-----~~--~~~----~~~~~ 245 (528)
T 4b8j_A 191 SPK-CRDLVLANG-----------ALLPLLAQLNEHTKL--SMLRNATWTLSNFCRGKP-----QP--SFE----QTRPA 245 (528)
T ss_dssp CHH-HHHHHHHTT-----------CHHHHHHTCCTTCCH--HHHHHHHHHHHHHHCSSS-----CC--CHH----HHTTH
T ss_pred Chh-hHHHHHHCC-----------cHHHHHHHHhcCCCH--HHHHHHHHHHHHHHcCCC-----CC--cHH----HHHHH
Confidence 665 344444432 255666666566665 779999999999987531 00 111 12455
Q ss_pred HHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHH
Q psy10039 164 IHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRK 243 (450)
Q Consensus 164 ~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~ 243 (450)
++.|+.-|.. .+..+....|..|+.+..+...++. .++..+++..++.++...+.-++..|++.+.+
T Consensus 246 l~~L~~lL~~------------~~~~v~~~a~~aL~~l~~~~~~~~~-~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 246 LPALARLIHS------------NDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp HHHHHHHTTC------------CCHHHHHHHHHHHHHHTSSCHHHHH-HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC------------CCHHHHHHHHHHHHHHHcCCHHHHH-HHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 6666554421 1244666778888887766554443 56778999999999999988899999999999
Q ss_pred HhcCChhHHHHHHHhhCchHHHHHHhhh
Q psy10039 244 IIAMKDDFYNRYIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 244 iI~l~Defy~ryiik~nLf~PIl~~f~~ 271 (450)
+..-. +.....+++.+++.+++.++..
T Consensus 313 l~~~~-~~~~~~~~~~~~l~~L~~lL~~ 339 (528)
T 4b8j_A 313 IVTGD-DAQTQCIIDHQALPCLLSLLTQ 339 (528)
T ss_dssp HTTSC-HHHHHHHHTTTHHHHHHHHHHS
T ss_pred HHcCC-HHHHHHHHHhhhHHHHHHHHcC
Confidence 98754 4566778899999999998864
No 6
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.60 E-value=0.0067 Score=62.75 Aligned_cols=235 Identities=13% Similarity=0.096 Sum_probs=154.9
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhh-hcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFS-QNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~la-K~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
.-|...+.+ .+.+-++.++..|..+|.-. ...+ ..+..|+++++-..|.++|..+|..++..|..+..
T Consensus 218 ~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~---------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 218 EPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCc---------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 446666666 45667788888888877643 1111 23457899999999999999999999999999999
Q ss_pred hChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhh
Q psy10039 83 FSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKY 162 (450)
Q Consensus 83 ~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~ 162 (450)
.++..+...+ . .-++..|++.| .+.++ .++.....+|..|.... ......+++ ..
T Consensus 287 ~~~~~~~~~~-~-----------~~~v~~Lv~lL-~~~~~--~v~~~a~~~L~~l~~~~-------~~~~~~~~~---~~ 341 (530)
T 1wa5_B 287 GPQEAIQAVI-D-----------VRIPKRLVELL-SHEST--LVQTPALRAVGNIVTGN-------DLQTQVVIN---AG 341 (530)
T ss_dssp SCHHHHHHHH-H-----------TTCHHHHHHGG-GCSCH--HHHHHHHHHHHHHTTSC-------HHHHHHHHH---TT
T ss_pred CCHHHHHHHH-h-----------cCcHHHHHHHH-CCCCh--hhHHHHHHHHHHHHcCC-------HHHHHHHHH---cc
Confidence 8887655432 2 12356677655 45555 66888888888877421 111122221 23
Q ss_pred hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHH
Q psy10039 163 SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMR 242 (450)
Q Consensus 163 ~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R 242 (450)
.++.|+.-|-.. ...+....|-.|+-+....+..++ .++..+++..+..++...+.-++-.|+..+.
T Consensus 342 ~l~~L~~lL~~~------------~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 342 VLPALRLLLSSP------------KENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp HHHHHHHHTTCS------------CHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC------------CHHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 455444333211 123344455566555554444444 4568899999999999888889999999999
Q ss_pred HHhcCChh--HHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHH
Q psy10039 243 KIIAMKDD--FYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYI 290 (450)
Q Consensus 243 ~iI~l~De--fy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~I 290 (450)
++..-.+. -+.+++++.+++.+++.++... +.-+-.++++.+..|
T Consensus 409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA---DNRIIEVTLDALENI 455 (530)
T ss_dssp HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 99875554 5788999999999999988653 233344445544443
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.59 E-value=0.021 Score=56.58 Aligned_cols=221 Identities=12% Similarity=0.055 Sum_probs=151.3
Q ss_pred hHHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhC-CCHHHHHHHHhCC-ChhhHHHHHHHHHH
Q psy10039 2 AEKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSL-GILPALEVVLSAE-DIATKNAAIDILNF 79 (450)
Q Consensus 2 ~~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~-GL~~vi~~~L~~~-d~~ir~~atdIL~~ 79 (450)
+...|...++++ +.+-|..++..|+.++....+ ++. +..++. |+++.+--.|+++ +..+|..|+.+|..
T Consensus 21 ~l~~l~~~l~s~--~~~~r~~A~~~L~~l~~~~~~--~~~-----~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 21 ITSDMIEMIFSK--SPEQQLSATQKFRKLLSKEPN--PPI-----DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTN 91 (450)
T ss_dssp -CHHHHHHHHSS--CHHHHHHHHHHHHHHHHSSSS--CCH-----HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCC--CcH-----HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 356788888765 456788999999988764333 222 346677 9999999999999 89999999999999
Q ss_pred HHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHH
Q psy10039 80 IIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYF 159 (450)
Q Consensus 80 iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~F 159 (450)
+..+++...+.++ + .-++..|++.| .+.++ .++.+.+.+|..|.... ...++.+++
T Consensus 92 l~~~~~~~~~~~~-~-----------~~~i~~L~~lL-~~~~~--~vr~~a~~~L~~l~~~~-------~~~~~~~~~-- 147 (450)
T 2jdq_A 92 IASGNSLQTRIVI-Q-----------AGAVPIFIELL-SSEFE--DVQEQAVWALGNIAGDS-------TMCRDYVLD-- 147 (450)
T ss_dssp HHSSCHHHHHHHH-H-----------TTHHHHHHHHT-TCSCH--HHHHHHHHHHHHHHTTC-------HHHHHHHHH--
T ss_pred HhcCCHHHHHHHH-h-----------CCCHHHHHHHH-cCCCH--HHHHHHHHHHHHHccCC-------HHHHHHHHH--
Confidence 9998887665542 1 12466677655 44566 67999999999887531 011222211
Q ss_pred HhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhc-cchhhhhhhhhhHHHHHHHhhccCCcchhHHHH
Q psy10039 160 YKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHH-SYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSL 238 (450)
Q Consensus 160 Y~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H-~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~Al 238 (450)
...++.|..-|-+. ....+....+..|+-+.++. +.....++ .+++..++.+++..+.-++..|+
T Consensus 148 -~~~i~~L~~~l~~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~ 213 (450)
T 2jdq_A 148 -CNILPPLLQLFSKQ-----------NRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVSDTDVLADAC 213 (450)
T ss_dssp -TTCHHHHHHHTTSC-----------CCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCCCHHHHHHHH
T ss_pred -CCCHHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccCCHHHHHHHH
Confidence 23445544433210 12345556666776666554 33323222 78899999999988888999999
Q ss_pred HHHHHHhcCChhHHHHHHHhhCchHHHHHHhh
Q psy10039 239 RFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFN 270 (450)
Q Consensus 239 Rf~R~iI~l~Defy~ryiik~nLf~PIl~~f~ 270 (450)
..++++..-.++. .+.+++.+++.+++.++.
T Consensus 214 ~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~ 244 (450)
T 2jdq_A 214 WALSYLSDGPNDK-IQAVIDAGVCRRLVELLM 244 (450)
T ss_dssp HHHHHHTSSSHHH-HHHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHCCCcHH-HHHHHHcCcHHHHHHHHC
Confidence 9999988755543 467888999999999886
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.56 E-value=0.011 Score=61.81 Aligned_cols=199 Identities=9% Similarity=0.072 Sum_probs=135.0
Q ss_pred CCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHH
Q psy10039 52 LGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLM 131 (450)
Q Consensus 52 ~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~ 131 (450)
.|+++++--.|.+++..++..|+-.|..+.++++..+...+ . .-.+..|+++| .+.++ .++....
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~-~-----------~g~i~~Lv~lL-~~~~~--~v~~~a~ 314 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV-K-----------KGVVPQLVKLL-GATEL--PIVTPAL 314 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH-T-----------TTCHHHHHHHH-TCSCH--HHHHHHH
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHH-h-----------ccchHHHHHHh-cCCCh--hHHHHHH
Confidence 46788888899999999999999999999998877554331 1 12355566655 44454 6788888
Q ss_pred HHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhh
Q psy10039 132 SILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKN 211 (450)
Q Consensus 132 eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~ 211 (450)
.+|..|.-.. ...+...++ ...++ +|...-... ...+-...|-.|+-+..+.+.+ +.
T Consensus 315 ~aL~nl~~~~-------~~~~~~i~~---~g~l~----~L~~LL~~~--------~~~i~~~a~~aL~nl~~~~~~~-~~ 371 (529)
T 3tpo_A 315 RAIGNIVTGT-------DEQTQKVID---AGALA----VFPSLLTNP--------KTNIQKEATWTMSNITAGRQDQ-IQ 371 (529)
T ss_dssp HHHHHHTTSC-------HHHHHHHHH---TTGGG----GHHHHTTCS--------SHHHHHHHHHHHHHHHTSCHHH-HH
T ss_pred HHHHHHHccc-------hHHHHHHhh---cccHH----HHHHHHcCC--------CHHHHHHHHHHHHHHhcccHHH-HH
Confidence 8888876321 111222221 12222 332221111 1223334555555555544443 45
Q ss_pred hhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHH
Q psy10039 212 FVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIK 291 (450)
Q Consensus 212 fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir 291 (450)
.++..+++..+..++.+.+.-++-.|+..+.++..-.+.-..+||++.+.+.|+++++.. .|.=+-..+|+-++.|.
T Consensus 372 ~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 372 QVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 688999999999999999888999999999999887888889999999999999998854 34445567778777775
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.54 E-value=0.007 Score=62.34 Aligned_cols=236 Identities=15% Similarity=0.145 Sum_probs=157.1
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
.-|...+.+. .+..-++.++..|..+|.-. +..+.. +..|+++++--.|.++|..++..++-.|..+..+
T Consensus 205 ~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~~~----~~~~~~-----~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 205 LPLLAQLNEH-TKLSMLRNATWTLSNFCRGK----PQPSFE-----QTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHHTCCTT-CCHHHHHHHHHHHHHHHCSS----SCCCHH-----HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHcCC----CCCcHH-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 3455566433 36677888888888888653 111211 2389999999999999999999999999999998
Q ss_pred ChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHH-hh
Q psy10039 84 SPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFY-KY 162 (450)
Q Consensus 84 dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY-~~ 162 (450)
++..+...+- .-.+..|+++|- +.++ .++.....+|..|.... +...+.+. ..
T Consensus 275 ~~~~~~~~~~------------~g~v~~Lv~lL~-~~~~--~v~~~a~~~L~nl~~~~-----------~~~~~~~~~~~ 328 (528)
T 4b8j_A 275 TNDKIQAVIE------------AGVCPRLVELLL-HPSP--SVLIPALRTVGNIVTGD-----------DAQTQCIIDHQ 328 (528)
T ss_dssp CHHHHHHHHH------------TTCHHHHHHHTT-CSCH--HHHHHHHHHHHHHTTSC-----------HHHHHHHHTTT
T ss_pred CHHHHHHHHH------------cCHHHHHHHHHc-CCCh--hHHHHHHHHHHHHHcCC-----------HHHHHHHHHhh
Confidence 8776554321 123566676554 4454 67888888888887521 11222222 23
Q ss_pred hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHH
Q psy10039 163 SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMR 242 (450)
Q Consensus 163 ~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R 242 (450)
.++.|..-|-.. ....+....|-.|+-+....... ...++..+++..+..++...+.-++..|+..+.
T Consensus 329 ~l~~L~~lL~~~-----------~~~~v~~~A~~~L~nl~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 329 ALPCLLSLLTQN-----------LKKSIKKEACWTISNITAGNKDQ-IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAIS 396 (528)
T ss_dssp HHHHHHHHHHSC-----------CCHHHHHHHHHHHHHHHTSCHHH-HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC-----------CcHHHHHHHHHHHHHHHCCCHHH-HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 455554443221 12334445666666655543333 346778899999999999888889999999999
Q ss_pred HHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHH
Q psy10039 243 KIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYI 290 (450)
Q Consensus 243 ~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~I 290 (450)
++..-.+.-..+|+++.+++.|++.++... +.-+--.+++.+..|
T Consensus 397 nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~---d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 397 NATSGGSHDQIKYLVSEGCIKPLCDLLICP---DIRIVTVCLEGLENI 441 (528)
T ss_dssp HHHHHSCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHH
Confidence 998876677889999999999999988652 223333444444444
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.53 E-value=0.0099 Score=61.89 Aligned_cols=199 Identities=9% Similarity=0.055 Sum_probs=135.3
Q ss_pred CCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHH
Q psy10039 52 LGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLM 131 (450)
Q Consensus 52 ~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~ 131 (450)
.|+++++--.|.+++..++..|+-.|..+.++++..+...+ . .-++..|+++|- ..++ .++....
T Consensus 231 ~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~-~-----------~g~i~~Lv~lL~-~~~~--~v~~~al 295 (510)
T 3ul1_B 231 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV-K-----------KGVVPQLVKLLG-ATEL--PIVTPAL 295 (510)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH-T-----------TTCHHHHHHHHT-CSCH--HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHH-h-----------cccchhhhhhhc-CCCh--hhhhHHH
Confidence 46778888899999999999999999999998876554321 1 123555666554 3444 6677777
Q ss_pred HHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhh
Q psy10039 132 SILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKN 211 (450)
Q Consensus 132 eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~ 211 (450)
.+|..|.-. +...+...++ . ..+.+|...-... ...+....|-.|+-+..+.... +.
T Consensus 296 ~aL~nl~~~-------~~~~~~~i~~----~---g~l~~L~~LL~~~--------~~~v~~~A~~aL~nl~a~~~~~-~~ 352 (510)
T 3ul1_B 296 RAIGNIVTG-------TDEQTQKVID----A---GALAVFPSLLTNP--------KTNIQKEATWTMSNITAGRQDQ-IQ 352 (510)
T ss_dssp HHHHHHTTS-------CHHHHHHHHH----T---TGGGGCC-CTTCS--------SHHHHHHHHHHHHHHTTSCHHH-HH
T ss_pred HHHHHhhcC-------CHHHHHHHhh----c---cchHHHHHHhcCC--------CHHHHHHHHHHHHHHHcCcHHH-HH
Confidence 888777632 1112222222 1 1233333332211 1234445555555555444333 55
Q ss_pred hhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHH
Q psy10039 212 FVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIK 291 (450)
Q Consensus 212 fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir 291 (450)
.+...+++..+..++.+.+.-++-.|...+.++..-.+.-...||++.+.+.|+++++... |.=+-..+|+.++.|-
T Consensus 353 ~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~---d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 353 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK---DTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC---CHHHHHHHHHHHHHHH
Confidence 7889999999999999999889999999999999888888899999999999999988543 4445667778777664
No 11
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.47 E-value=0.0097 Score=54.01 Aligned_cols=201 Identities=13% Similarity=0.091 Sum_probs=135.5
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
+-|...+++++ .+-|..++..|..++.-. ...-..+++.|.++.+-..|++++..+|..|+-+|..+..+
T Consensus 47 ~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~--------~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 116 (252)
T 4hxt_A 47 EVLVKLLTSTD--SEVQKEAARALANIASGP--------DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 116 (252)
T ss_dssp HHHHHHTTCSC--HHHHHHHHHHHHHHTTSC--------HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCC--HHHHHHHHHHHHHHHcCC--------hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 44566666643 566777777776655421 23334567889999999999999999999999999999988
Q ss_pred ChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhh
Q psy10039 84 SPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYS 163 (450)
Q Consensus 84 dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~ 163 (450)
++...... .+. -.+..|++.| .+.++ .++.....+|..|.... ...+..+.+ ...
T Consensus 117 ~~~~~~~~-~~~-----------~~i~~L~~~l-~~~~~--~~~~~a~~~L~~l~~~~-------~~~~~~~~~---~~~ 171 (252)
T 4hxt_A 117 PDEAIKAI-VDA-----------GGVEVLVKLL-TSTDS--EVQKEAARALANIASGP-------DEAIKAIVD---AGG 171 (252)
T ss_dssp CHHHHHHH-HHT-----------THHHHHHHHT-TCSCH--HHHHHHHHHHHHHTTSC-------HHHHHHHHH---TTH
T ss_pred CHHHHHHH-HHC-----------CCHHHHHHHH-cCCCH--HHHHHHHHHHHHHHcCC-------HHHHHHHHH---CcC
Confidence 88754433 222 2366667654 45565 67999999999987531 111122222 345
Q ss_pred HHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHH
Q psy10039 164 IHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRK 243 (450)
Q Consensus 164 ~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~ 243 (450)
++.|+.-|-+. +..+....+..|+-+..+++ ..+..+.+.+++..+..+++..+.-++-.|++.+++
T Consensus 172 i~~L~~ll~~~------------~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 172 VEVLVKLLTST------------DSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHTTCS------------CHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC------------CHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 66665544321 12344556666666555433 345678899999999999999888899999999999
Q ss_pred HhcCChhHH
Q psy10039 244 IIAMKDDFY 252 (450)
Q Consensus 244 iI~l~Defy 252 (450)
+.......+
T Consensus 239 l~~~~~~~~ 247 (252)
T 4hxt_A 239 IKSGGWLEH 247 (252)
T ss_dssp HHHTCBCCC
T ss_pred HHcCCCccc
Confidence 987665443
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.37 E-value=0.031 Score=57.70 Aligned_cols=221 Identities=15% Similarity=0.168 Sum_probs=150.6
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
..|...+++++ +.+-|..++..|..+|.-. ...-+.+++.|+++.+-..|++++..+|..|+..|..|...
T Consensus 133 ~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~--------~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~ 203 (530)
T 1wa5_B 133 PRLVEFMRENQ-PEMLQLEAAWALTNIASGT--------SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD 203 (530)
T ss_dssp HHHHHTTSTTS-CHHHHHHHHHHHHHHTTSC--------HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC--------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 34555555542 4556777777766665432 12225567899999999999999999999999999999988
Q ss_pred ChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhh
Q psy10039 84 SPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYS 163 (450)
Q Consensus 84 dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~ 163 (450)
+|.. |..+... -.+..|+++|- +.++ .++...+.+|..|....+-.. . + ......
T Consensus 204 ~~~~-~~~~~~~-----------~~l~~L~~ll~-~~~~--~v~~~a~~~L~~L~~~~~~~~-----~---~--~~~~~~ 258 (530)
T 1wa5_B 204 STDY-RDYVLQC-----------NAMEPILGLFN-SNKP--SLIRTATWTLSNLCRGKKPQP-----D---W--SVVSQA 258 (530)
T ss_dssp CHHH-HHHHHHT-----------TCHHHHHHGGG-SCCH--HHHHHHHHHHHHHHCCSSSCC-----C---H--HHHGGG
T ss_pred Cccc-hHHHHHc-----------CcHHHHHHHhc-cCCH--HHHHHHHHHHHHHhCCCCCCC-----c---H--HHHHhH
Confidence 7654 3443332 23556666554 4555 679999999999986531110 0 1 122445
Q ss_pred HHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHH
Q psy10039 164 IHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRK 243 (450)
Q Consensus 164 ~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~ 243 (450)
++.|+.-|.+ .+..+....|..|+.+..+.+-.+ ..++..+++..++.++...+.-++..|++.+.+
T Consensus 259 l~~L~~lL~~------------~d~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 259 LPTLAKLIYS------------MDTETLVDACWAISYLSDGPQEAI-QAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp HHHHHHHTTC------------CCHHHHHHHHHHHHHHHSSCHHHH-HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC------------CCHHHHHHHHHHHHHHhCCCHHHH-HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 5665543321 124566677888887776554433 356778999999999998888899999999999
Q ss_pred HhcCChhHHHHHHHhhCchHHHHHHhhhc
Q psy10039 244 IIAMKDDFYNRYIIKGHLFQPVIDTFNRN 272 (450)
Q Consensus 244 iI~l~Defy~ryiik~nLf~PIl~~f~~n 272 (450)
+..-.++ ..+.++..+++.+++.++...
T Consensus 326 l~~~~~~-~~~~~~~~~~l~~L~~lL~~~ 353 (530)
T 1wa5_B 326 IVTGNDL-QTQVVINAGVLPALRLLLSSP 353 (530)
T ss_dssp HTTSCHH-HHHHHHHTTHHHHHHHHTTCS
T ss_pred HHcCCHH-HHHHHHHcchHHHHHHHHcCC
Confidence 8875544 556778889999999988643
No 13
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.26 E-value=0.037 Score=49.28 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=125.7
Q ss_pred HHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHH
Q psy10039 48 TLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRA 127 (450)
Q Consensus 48 ~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~ 127 (450)
..-..|..+.+-..|+++|..+|..|+-.|..+..+++...+.++ +. -.+..|++.|- +.++ .++
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~-----------g~i~~L~~lL~-~~~~--~v~ 71 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVI-DA-----------GALPALVQLLS-SPNE--QIL 71 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HT-----------THHHHHHHHTT-CSCH--HHH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-Hc-----------CCHHHHHHHHc-CCCH--HHH
Confidence 344578889999999999999999999999999988887654442 22 23566666554 4465 679
Q ss_pred HHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHh-hhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhcc
Q psy10039 128 VQLMSILKILIDPDNMLSSINKTEKCEFLNYFYK-YSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHS 206 (450)
Q Consensus 128 ~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~-~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~ 206 (450)
.+...+|..|.... ++....+.+ ..++.|+.-|-+. +..+....|-.|+-+..+.+
T Consensus 72 ~~a~~~L~~l~~~~-----------~~~~~~i~~~g~i~~L~~lL~~~------------~~~v~~~a~~~L~~l~~~~~ 128 (210)
T 4db6_A 72 QEALWALSNIASGG-----------NEQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGN 128 (210)
T ss_dssp HHHHHHHHHHTTSC-----------HHHHHHHHHTTCHHHHHHHTTCS------------CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHhcCC-----------cHHHHHHHHCCCHHHHHHHHcCC------------cHHHHHHHHHHHHHHHcCCH
Confidence 99999999887321 112222332 3456665544221 13344455666665555443
Q ss_pred chhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhh
Q psy10039 207 YHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 207 ~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~ 271 (450)
-. +..++..+++..++.++++.+.-++..|+.++.++..-. +-....+++.+.+.+++.++..
T Consensus 129 ~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~ 191 (210)
T 4db6_A 129 EQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191 (210)
T ss_dssp HH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGC
T ss_pred HH-HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhC
Confidence 33 345778999999999999988889999999999998844 4456788999999999997763
No 14
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.23 E-value=0.047 Score=48.61 Aligned_cols=192 Identities=15% Similarity=0.099 Sum_probs=133.2
Q ss_pred HHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhCh
Q psy10039 6 LLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSP 85 (450)
Q Consensus 6 LF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp 85 (450)
|...++++ +.+-|..++.-|..++.-. ...-..+++.|.++.+--.|++++..+|..|+-.|..|..+++
T Consensus 17 l~~LL~s~--~~~v~~~a~~~L~~l~~~~--------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 17 MVQQLNSP--DQQELQSALRKLSQIASGG--------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp HHHHTTCS--CHHHHHHHHHHHHHHHTSC--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHcCC--------HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 45555544 5677889999888877432 2233567888999999999999999999999999999998887
Q ss_pred hHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHH
Q psy10039 86 SFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIH 165 (450)
Q Consensus 86 ~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~ 165 (450)
...... .+.. .+..|++.| .+.++ .++.....+|..|.... ......+ .-...++
T Consensus 87 ~~~~~i-~~~g-----------~i~~L~~lL-~~~~~--~v~~~a~~~L~~l~~~~-------~~~~~~~---~~~~~i~ 141 (210)
T 4db6_A 87 EQIQAV-IDAG-----------ALPALVQLL-SSPNE--QILQEALWALSNIASGG-------NEQIQAV---IDAGALP 141 (210)
T ss_dssp HHHHHH-HHTT-----------CHHHHHHHT-TCSCH--HHHHHHHHHHHHHTTSC-------HHHHHHH---HHTTHHH
T ss_pred HHHHHH-HHCC-----------CHHHHHHHH-cCCcH--HHHHHHHHHHHHHHcCC-------HHHHHHH---HHcCcHH
Confidence 765443 3221 255666655 44465 77999999999987421 1111122 1234566
Q ss_pred HhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHh
Q psy10039 166 LLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKII 245 (450)
Q Consensus 166 ~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI 245 (450)
.|+.-|-+. +..+....|..|+-+..+++ ..+..+...+.+..+..++...+.-++-.|+.+++++-
T Consensus 142 ~L~~ll~~~------------~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 142 ALVQLLSSP------------NEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTCS------------CHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCC------------CHHHHHHHHHHHHHHHcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 665554321 23455667777776665433 34667889999999999999988889999999998864
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.18 E-value=0.029 Score=58.48 Aligned_cols=233 Identities=13% Similarity=0.175 Sum_probs=146.1
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCC-ChhhHHHHHHHHHHHHh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAE-DIATKNAAIDILNFIIE 82 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~-d~~ir~~atdIL~~iie 82 (450)
+++-..+.++ +.+.+..++..++.+. ++.-.|+ ...+++.|+++.+=-.|+.. ++.++..|+-+|..|..
T Consensus 79 ~~lv~~l~s~--d~~~q~~a~~~~rklL--s~~~~~~-----i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~ 149 (529)
T 3tpo_A 79 EDIVKGINSN--NLESQLQATQAARKLL--SREKQPP-----IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 149 (529)
T ss_dssp HHHHHHHTSS--CHHHHHHHHHHHHHHH--TSSSCCC-----HHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHH--cCCCCch-----HHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHc
Confidence 4455555543 3456777777777764 3333343 34578999999988888655 58899999999999999
Q ss_pred hChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcC-CCCC----------------Cc
Q psy10039 83 FSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILID-PDNM----------------LS 145 (450)
Q Consensus 83 ~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLD-p~~m----------------~~ 145 (450)
+++.-.+..+ ... .+..|+. |+.+.++ .++.|.+.||.-|-- .+.. +.
T Consensus 150 ~~~~~~~~vv-~~G-----------aip~Lv~-LL~s~~~--~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~ 214 (529)
T 3tpo_A 150 GTSEQTKAVV-DGG-----------AIPAFIS-LLASPHA--HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214 (529)
T ss_dssp SCHHHHHHHH-HTT-----------HHHHHHH-HTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC
T ss_pred CCHHHHHHHH-HCC-----------CHHHHHH-HHcCCCH--HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh
Confidence 9887655432 222 2455665 4455555 679998888887753 1100 00
Q ss_pred cCCch-hHHHHH-------HHHHhh--------hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchh
Q psy10039 146 SINKT-EKCEFL-------NYFYKY--------SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHI 209 (450)
Q Consensus 146 ~~~~~-e~~~fl-------~~FY~~--------~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~ri 209 (450)
..... ....++ ..+..+ .+..++.+|...- ...+..+....|-.|+++..++..++
T Consensus 215 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL--------~~~~~~v~~~a~~aL~~l~~~~~~~~ 286 (529)
T 3tpo_A 215 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL--------HHNDPEVLADSCWAISYLTDGPNERI 286 (529)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT--------TSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred ccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh--------cCCcHHHHHHHHHHHHHhhhhhhhhH
Confidence 00000 000011 000000 0000011111100 11234566677778888877666554
Q ss_pred hhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhh
Q psy10039 210 KNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFN 270 (450)
Q Consensus 210 K~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~ 270 (450)
+ .+...+++.++..|+.+.+..++..|+|++.+++.- ++.....++..+.+.+++.++.
T Consensus 287 ~-~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~ 345 (529)
T 3tpo_A 287 E-MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLT 345 (529)
T ss_dssp H-HHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTT
T ss_pred H-HHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHc
Confidence 4 677889999999999999999999999999998874 5566788999999999999875
No 16
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.10 E-value=0.048 Score=49.92 Aligned_cols=193 Identities=18% Similarity=0.116 Sum_probs=132.5
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
+-|...+++++ .+-|..++..|..+|.-. ...-..+++.|.++.+-..|++++..+|..|+..|..|...
T Consensus 57 ~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~--------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 126 (252)
T 4db8_A 57 PALVQLLSSPN--EQILQEALWALSNIASGG--------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126 (252)
T ss_dssp HHHHHGGGCSC--HHHHHHHHHHHHHHTTSC--------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHhcCC--------HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 45667777665 667788888777766421 12235567889999999999999999999999999999988
Q ss_pred ChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHH-hh
Q psy10039 84 SPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFY-KY 162 (450)
Q Consensus 84 dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY-~~ 162 (450)
++..+... .+. -.+..|++.| .+.++ .++.....+|..|.... ++ ....+. ..
T Consensus 127 ~~~~~~~~-~~~-----------~~i~~L~~lL-~~~~~--~v~~~a~~~L~~l~~~~--------~~---~~~~~~~~~ 180 (252)
T 4db8_A 127 GNEQIQAV-IDA-----------GALPALVQLL-SSPNE--QILQEALWALSNIASGG--------NE---QIQAVIDAG 180 (252)
T ss_dssp CHHHHHHH-HHT-----------THHHHHHHGG-GCSCH--HHHHHHHHHHHHHTTSC--------HH---HHHHHHHTT
T ss_pred CchHHHHH-HHC-----------CCHHHHHHHH-hCCCH--HHHHHHHHHHHHHHcCC--------hH---HHHHHHHCC
Confidence 77654332 222 2366677765 44565 77999999999998531 11 112222 34
Q ss_pred hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHH
Q psy10039 163 SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMR 242 (450)
Q Consensus 163 ~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R 242 (450)
.++.|+.-|.+. +..+....|..|+-+..+++. .+..+++.+++..+..++...+.-++-.|.+++.
T Consensus 181 ~i~~L~~ll~~~------------~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 181 ALPALVQLLSSP------------NEQILQEALWALSNIASGGNE-QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp CHHHHHHGGGCS------------SHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred CHHHHHHHHCCC------------CHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 566665544321 234555666777665544443 3556788999999999999998889999999988
Q ss_pred HHh
Q psy10039 243 KII 245 (450)
Q Consensus 243 ~iI 245 (450)
++.
T Consensus 248 ~l~ 250 (252)
T 4db8_A 248 KLQ 250 (252)
T ss_dssp TTC
T ss_pred HHh
Confidence 764
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.73 E-value=0.057 Score=56.08 Aligned_cols=238 Identities=12% Similarity=0.148 Sum_probs=147.1
Q ss_pred hHHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCC-ChhhHHHHHHHHHHH
Q psy10039 2 AEKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAE-DIATKNAAIDILNFI 80 (450)
Q Consensus 2 ~~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~-d~~ir~~atdIL~~i 80 (450)
+.+||-..+++. +.+.+..++.-++.+-+..+ .|| ...+++.|+++.+=-.|+.. ++.++..|+-+|..|
T Consensus 58 ~i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~--~pp-----i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~ni 128 (510)
T 3ul1_B 58 SVEDIVKGINSN--NLESQLQATQAARKLLSREK--QPP-----IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI 128 (510)
T ss_dssp CHHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSS--CCC-----HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCC--Cch-----HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 345666666554 35677888888888754433 344 24578999999999999865 578999999999999
Q ss_pred HhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcC-CCCC---C------------
Q psy10039 81 IEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILID-PDNM---L------------ 144 (450)
Q Consensus 81 ie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLD-p~~m---~------------ 144 (450)
.-+++...+.. .+.. -+..|+++| .+.++ .++.|.+.||.-|-- .+.. .
T Consensus 129 as~~~e~~~~v-v~~G-----------aIp~Lv~lL-~s~~~--~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l 193 (510)
T 3ul1_B 129 ASGTSEQTKAV-VDGG-----------AIPAFISLL-ASPHA--HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193 (510)
T ss_dssp HTSCHHHHHHH-HHTT-----------HHHHHHHHT-TCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCHHHHHHH-HHCC-----------CHHHHHHHH-cCCCH--HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence 98888776554 3322 145566655 44454 679998888887752 1110 0
Q ss_pred -ccCCch-hHHHHHHHHHhhhHHHhccccccCCCCC-ccc-----------ccccchHHHHHHHHHHHHHHHhhccchhh
Q psy10039 145 -SSINKT-EKCEFLNYFYKYSIHLLMDPLLDNTKKD-EVQ-----------VDSYHNAQLLGVILELLSFCVEHHSYHIK 210 (450)
Q Consensus 145 -~~~~~~-e~~~fl~~FY~~~~~~L~~PL~~~~~~~-~~~-----------~~~~~~~~ll~~l~eLL~Fcv~~H~~riK 210 (450)
...+.. ....++. .+ -+...-+....... ... -....+..+....|-.|+.+..+...+++
T Consensus 194 L~~~~~~~~~~~~~~----~a-~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~ 268 (510)
T 3ul1_B 194 LAVPDLSTLACGYLR----NL-TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268 (510)
T ss_dssp TCSSCGGGSCHHHHH----HH-HHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHhccchhhhHHHHH----HH-HHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHH
Confidence 000000 0000000 00 00000000000000 000 00112344566677777777766655544
Q ss_pred hhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhh
Q psy10039 211 NFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFN 270 (450)
Q Consensus 211 ~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~ 270 (450)
.+...+++.++..|+.+.+.-++..|+|.+.++..- ++-....++..+.+.+++.++.
T Consensus 269 -~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~ 326 (510)
T 3ul1_B 269 -MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLT 326 (510)
T ss_dssp -HHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGCC-CTT
T ss_pred -HHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC-CHHHHHHHhhccchHHHHHHhc
Confidence 577889999999999999999999999999998875 4556788999999988877664
No 18
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.19 E-value=0.66 Score=49.24 Aligned_cols=233 Identities=13% Similarity=0.100 Sum_probs=140.2
Q ss_pred HHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhCh
Q psy10039 6 LLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSP 85 (450)
Q Consensus 6 LF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp 85 (450)
|...++++ +.+-++.++..|..+|.-+.... ...|+++.+-..|+++|..+|..|+-+|..+..+++
T Consensus 229 L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~-----------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~ 295 (644)
T 2z6h_A 229 LGLHLTDP--SQRLVQNCLWTLRNLSDAATKQE-----------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 295 (644)
T ss_dssp HHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCC-----------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHHhhcchhhh-----------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 44444443 45567777777777765443211 112677888888999999999999999999998876
Q ss_pred hHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCC-cchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhH
Q psy10039 86 SFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTD-PELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSI 164 (450)
Q Consensus 86 ~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d-~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~ 164 (450)
.. |..+.+.. .+..|++.|....+ + .++.....+|..|-.... . +..-+..++. ...+
T Consensus 296 ~~-~~~v~~~g-----------~v~~Lv~lL~~~~~~~--~v~~~a~~aL~nL~~~~~-~---~~~~q~~v~~---~~~l 354 (644)
T 2z6h_A 296 KN-KMMVCQVG-----------GIEALVRTVLRAGDRE--DITEPAICALRHLTSRHQ-E---AEMAQNAVRL---HYGL 354 (644)
T ss_dssp HH-HHHHHHTT-----------HHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTSSST-T---HHHHHHHHHH---TTHH
T ss_pred HH-HHHHHHcC-----------CHHHHHHHHHccCCcH--HHHHHHHHHHHHHhcCCc-h---HHHHHHHHHH---ccCh
Confidence 54 33333321 36667777765433 3 668888899998864210 0 0000111111 2234
Q ss_pred HHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCC--------------
Q psy10039 165 HLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCH-------------- 230 (450)
Q Consensus 165 ~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~-------------- 230 (450)
+.|..-|... ....+....|-.|+-+..+-..+ ..++..+++..+..++...+
T Consensus 355 ~~L~~lL~~~-----------~~~~v~~~a~~~L~nLa~~~~~~--~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~ 421 (644)
T 2z6h_A 355 PVVVKLLHPP-----------SHWPLIKATVGLIRNLALCPANH--APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 421 (644)
T ss_dssp HHHHHTTSTT-----------CCHHHHHHHHHHHHHHTTSGGGH--HHHHHTTHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHhCcc-----------CchHHHHHHHHHHHHHccCHHHH--HHHHHcCCHHHHHHHHhccchhhhhHhhhccccc
Confidence 4444333211 01123334455555444433333 56778899999888876532
Q ss_pred --------cchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHH
Q psy10039 231 --------TFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEY 289 (450)
Q Consensus 231 --------K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~ 289 (450)
.-++.+|++.++++.. +.-....+.+.+.+.|+++++.. .-.|+...|+--|-+.
T Consensus 422 ~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 422 QFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVLCEL 484 (644)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 2367789999998874 44555667799999999999864 3345666665544443
No 19
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.08 E-value=0.16 Score=55.14 Aligned_cols=187 Identities=14% Similarity=0.212 Sum_probs=117.0
Q ss_pred HHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchh
Q psy10039 46 YKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELG 125 (450)
Q Consensus 46 f~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG 125 (450)
-.++.+..++++|+- |+++|+..|..|+-.|..|++ ||+..+-.+.+. ++..++..+++|.++ -
T Consensus 28 ~~~~~~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~------------~v~~ll~~lL~D~~~--~ 91 (684)
T 4gmo_A 28 LAKLREDKILPVLKD-LKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQ------------VVHIVLTETLTDNNI--D 91 (684)
T ss_dssp HHHHHHHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTT------------HHHHHHHTTTTCSCH--H
T ss_pred ccccchhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcC------------CHHHHHHHHcCCCCH--H
Confidence 356778899999997 999999999999999999996 888766543322 355667778888776 6
Q ss_pred HHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhh-hHHHhccccc-------cCCCC-Cccccc-ccchHHHHHHHH
Q psy10039 126 RAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKY-SIHLLMDPLL-------DNTKK-DEVQVD-SYHNAQLLGVIL 195 (450)
Q Consensus 126 ~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~-~~~~L~~PL~-------~~~~~-~~~~~~-~~~~~~ll~~l~ 195 (450)
++.+.+.|||.|---++ .++..+.|+. .++-|..=|- ..... ...... ...-..+..++|
T Consensus 92 Vr~~A~gaLrnL~~~~g----------~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (684)
T 4gmo_A 92 SRAAGWEILKVLAQEEE----------ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLL 161 (684)
T ss_dssp HHHHHHHHHHHHHHHSC----------HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcC----------chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 79999999999863211 2233333332 2222211110 00000 011000 001112333455
Q ss_pred HHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcc---hhHHHHHHHHHHhcCChhHHHHHHHhhC
Q psy10039 196 ELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTF---LVLSSLRFMRKIIAMKDDFYNRYIIKGH 260 (450)
Q Consensus 196 eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~---L~L~AlRf~R~iI~l~Defy~ryiik~n 260 (450)
-+|.- .-.++-.+...|...+.+..++.++...++. ++.+|+.|+.++..-++++. +.+..++
T Consensus 162 ~lL~~-L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~-~~i~~~~ 227 (684)
T 4gmo_A 162 VLIGL-LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVG-QAITDDQ 227 (684)
T ss_dssp HHHHH-HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHH-HHHHTCC
T ss_pred HHHHH-HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHH-HHHHhcc
Confidence 55533 3345555566788888899888777555543 89999999999988888765 4455444
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.08 E-value=1.4 Score=44.37 Aligned_cols=232 Identities=14% Similarity=0.054 Sum_probs=148.6
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
..|...+++++ .+-+..++.-|..+|.-..+. | +.+++.|.++.+-..|++++..+|..++..|..+.-.
T Consensus 104 ~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~----~----~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 104 PALVKMLGSPV--DSVLFYAITTLHNLLLHQEGA----K----MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTH----H----HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcch----H----HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 45666666653 567888888888888764321 2 3456789999999999999999999999999888766
Q ss_pred ChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhh
Q psy10039 84 SPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYS 163 (450)
Q Consensus 84 dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~ 163 (450)
++..-.. +.+.. -+..|++.|-...+. ..+.....+|+.|-..+ ..+..+++ ...
T Consensus 174 ~~~~~~~-i~~~~-----------~i~~L~~ll~~~~~~--~~~~~a~~~L~~l~~~~--------~~~~~~~~---~g~ 228 (529)
T 1jdh_A 174 NQESKLI-ILASG-----------GPQALVNIMRTYTYE--KLLWTTSRVLKVLSVCS--------SNKPAIVE---AGG 228 (529)
T ss_dssp CHHHHHH-HHHTT-----------HHHHHHHHHHHCCCH--HHHHHHHHHHHHHTTST--------THHHHHHH---TTH
T ss_pred CHHHHHH-HHHCC-----------CHHHHHHHHHhCChH--HHHHHHHHHHHHHhcCc--------ccHHHHHH---CCC
Confidence 6654332 22211 145566655444332 45666777888776421 12232322 134
Q ss_pred HHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHH
Q psy10039 164 IHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRK 243 (450)
Q Consensus 164 ~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~ 243 (450)
++.|..-+.+ . ...+..+.+..|+.+..+.+. .....+++..++.++++.+.-++..|.+.+.+
T Consensus 229 ~~~L~~ll~~----~--------~~~~~~~a~~~L~~l~~~~~~----~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 229 MQALGLHLTD----P--------SQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp HHHHHTTTTS----S--------CHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC----C--------ChHHHHHHHHHHHHHhcCChh----hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444433311 1 123444555566555544322 22345889999999999888899999999999
Q ss_pred HhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHH
Q psy10039 244 IIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELF 287 (450)
Q Consensus 244 iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElf 287 (450)
+.. ++.-....+++.+...+++.++....+...+...|+--|-
T Consensus 293 L~~-~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 293 LTC-NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp HTT-TCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hhc-CCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 855 4455677888999999999999876655555555544443
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.02 E-value=1.5 Score=46.52 Aligned_cols=225 Identities=13% Similarity=0.038 Sum_probs=145.8
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
..|...++++ +.+-|+.++.-|..+|.-.. . ..+.+++.|.++.+--.|++++..++..++++|..+.-.
T Consensus 101 ~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~----~----~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 101 PALVKMLGSP--VDSVLFYAITTLHNLLLHQE----G----AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHHHHST----T----HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHhCcc----h----hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 4556666654 35668888888888776532 1 224556889999999999999999999999999888865
Q ss_pred ChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhh
Q psy10039 84 SPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYS 163 (450)
Q Consensus 84 dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~ 163 (450)
++..- ..+.+.. .+..|+++|-....+ .++.....+|+.|-..+ ..+..+++ ...
T Consensus 171 ~~~~~-~~i~~~g-----------~v~~Lv~lL~~~~~~--~~~~~a~~~L~nLs~~~--------~~~~~l~~---~g~ 225 (644)
T 2z6h_A 171 NQESK-LIILASG-----------GPQALVNIMRTYTYE--KLLWTTSRVLKVLSVCS--------SNKPAIVE---AGG 225 (644)
T ss_dssp CHHHH-HHHHHTT-----------HHHHHHHHHTTCCCH--HHHHHHHHHHHHHTTCT--------THHHHHHH---TTH
T ss_pred CcHHH-HHHHHcC-----------ChHHHHHHHHcCChH--HHHHHHHHHHHHHhcCc--------ccHHHHHH---CCC
Confidence 55432 2222221 255667666554332 44667788888886421 12333332 124
Q ss_pred HHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHH
Q psy10039 164 IHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRK 243 (450)
Q Consensus 164 ~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~ 243 (450)
++.|+.-+.. . ...+....+..|.-+..+.+. .....+++..++.|+++.+.-++..|...+.+
T Consensus 226 l~~L~~ll~~----~--------~~~~~~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 226 MQALGLHLTD----P--------SQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp HHHHHTTTTC----S--------CHHHHHHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----C--------CHHHHHHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4544443311 1 133445556666555444322 23345889999999999888899999999998
Q ss_pred HhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchh
Q psy10039 244 IIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLD 280 (450)
Q Consensus 244 iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLln 280 (450)
+.. ++.-....+++.+...+++.++...+++..+..
T Consensus 290 L~~-~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~ 325 (644)
T 2z6h_A 290 LTC-NNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 325 (644)
T ss_dssp HHT-TCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHc-CCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHH
Confidence 865 455567888899999999999987665444433
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.78 E-value=0.41 Score=48.39 Aligned_cols=185 Identities=16% Similarity=0.125 Sum_probs=125.1
Q ss_pred HHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHH
Q psy10039 49 LSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAV 128 (450)
Q Consensus 49 Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~ 128 (450)
.+..|.++.+--.|+++|+.+|..|+..|..+..+++. |..+... .-.+..|++.|-...|+ .++.
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~--~~~~~~~----------~~~i~~Lv~~L~~~~~~--~~~~ 78 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--RHAIMRS----------PQMVSAIVRTMQNTNDV--ETAR 78 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH--HHHHHTC----------HHHHHHHHHHHHHCCCH--HHHH
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc--HHHHHhC----------cchHHHHHHHHhcCCCH--HHHH
Confidence 35789999999999999999999999999999987653 3222221 12356677777665566 5688
Q ss_pred HHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccch
Q psy10039 129 QLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYH 208 (450)
Q Consensus 129 Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~r 208 (450)
....+|+.|-..+ ..+..+.+ ...++.|+.-|-+. +..+....+..|.-+..++...
T Consensus 79 ~a~~~L~~ls~~~--------~~~~~i~~---~g~i~~L~~lL~~~------------~~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 79 CTAGTLHNLSHHR--------EGLLAIFK---SGGIPALVKMLGSP------------VDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHTTSH--------HHHHHHHH---TTHHHHHHHHTTCS------------CHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHcCc--------hhHHHHHH---cCCHHHHHHHHcCC------------CHHHHHHHHHHHHHHhcCCcch
Confidence 8889999875421 11222222 24566665544221 1345556677776655554332
Q ss_pred hhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhc
Q psy10039 209 IKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRN 272 (450)
Q Consensus 209 iK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n 272 (450)
+..+...+.+..++.++++.+.-++-.|.+.++++.. .++-....+++.+...+++.++...
T Consensus 136 -~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~-~~~~~~~~i~~~~~i~~L~~ll~~~ 197 (529)
T 1jdh_A 136 -KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 197 (529)
T ss_dssp -HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred -HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5677789999999999998876678888888886654 5566677888889999999987654
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.70 E-value=0.26 Score=54.19 Aligned_cols=229 Identities=13% Similarity=0.034 Sum_probs=131.4
Q ss_pred HHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhC
Q psy10039 5 DLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFS 84 (450)
Q Consensus 5 eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~d 84 (450)
-|...|++.. +.+-|+.++..|..++.-. ..+ ..+++.|.++++--.|++++..+|..|+..|..|...+
T Consensus 196 ~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~~-----~~~----~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 196 AIVRTMQNTN-DVETARCTSGTLHNLSHHR-----EGL----LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp HHHHHHHHCC-CHHHHHHHHHHHHHHHTSH-----HHH----HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHhCCc-----hhH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 4555665443 6677888888888744331 112 34556799999999999999999999999999999887
Q ss_pred hhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC--CCC----Cc-----------cC
Q psy10039 85 PSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDP--DNM----LS-----------SI 147 (450)
Q Consensus 85 p~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp--~~m----~~-----------~~ 147 (450)
+..-+.+ .+. -.+..|+++|-. .++ .++....++|+.|--. ++. .. ..
T Consensus 266 ~~~~~~v-~~~-----------g~v~~Lv~lL~~-~~~--~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~ 330 (780)
T 2z6g_A 266 EGAKMAV-RLA-----------GGLQKMVALLNK-TNV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 330 (780)
T ss_dssp TTHHHHH-HHT-----------THHHHHHHGGGC-CCH--HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC
T ss_pred hhhHHHH-HHc-----------CCHHHHHHHHhc-CCH--HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC
Confidence 6543332 221 124555555433 333 4455566666655421 000 00 00
Q ss_pred CchhHH----HHH----------HHHHh-hhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhh
Q psy10039 148 NKTEKC----EFL----------NYFYK-YSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNF 212 (450)
Q Consensus 148 ~~~e~~----~fl----------~~FY~-~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~f 212 (450)
...... ..| ..+.+ ..++. |+..-... ...+....+..|.-+....+. .
T Consensus 331 ~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~----Ll~lL~~~--------~~~~~~~a~~~L~~L~~~~~~----~ 394 (780)
T 2z6g_A 331 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA----LGLHLTDP--------SQRLVQNCLWTLRNLSDAATK----Q 394 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHH----HGGGTTCS--------CHHHHHHHHHHHHHHHTTCTT----C
T ss_pred CHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHH----HHHHHcCC--------chHHHHHHHHHHHHHhccchh----h
Confidence 000000 000 00000 01222 22211110 112333334444333332211 2
Q ss_pred hhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCC
Q psy10039 213 VLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGR 275 (450)
Q Consensus 213 il~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R 275 (450)
....+++..++.++++.+.-++..|++.+.++..- +.-....+++.+.+.+++.++...+..
T Consensus 395 ~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 456 (780)
T 2z6g_A 395 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDR 456 (780)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccCCH
Confidence 23467888999999998888999999999998664 445567888999999999999875543
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.64 E-value=0.47 Score=50.68 Aligned_cols=221 Identities=11% Similarity=0.088 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHhCC-------CHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHH
Q psy10039 40 QAKENFYKTLSSLG-------ILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVI 112 (450)
Q Consensus 40 ~~r~~ff~~Lv~~G-------L~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~L 112 (450)
.-|..-.++|.+-| +++.|.-+|+++++.||.+|+--+..|...+|.+++.++ ..
T Consensus 122 ~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~-----------------~~- 183 (618)
T 1w63_A 122 FVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFL-----------------PA- 183 (618)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGG-----------------GG-
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHH-----------------HH-
Confidence 34444455554433 366777889999999999999999999999998775321 11
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCccccccc---chHH
Q psy10039 113 IEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSY---HNAQ 189 (450)
Q Consensus 113 i~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~---~~~~ 189 (450)
+..++.|.|| ++....+.+|..+..-. ++ . .-.|..+++.|+.-|........+..-.+ .+++
T Consensus 184 l~~lL~D~d~--~V~~~Al~~L~~i~~~~--------~~---~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 249 (618)
T 1w63_A 184 TKNLLNEKNH--GVLHTSVVLLTEMCERS--------PD---M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249 (618)
T ss_dssp TTTSTTCCCH--HHHHHHHHHHHHHCCSH--------HH---H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred HHHHhCCCCH--hHHHHHHHHHHHHHHhC--------hH---H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence 1235688887 88888888888876420 11 1 22345666766665543211110000011 2566
Q ss_pred HHHHHHHHHHHHHhhccchhhh---h---hh------------------------------hhhHHHHHHHhhccCCcch
Q psy10039 190 LLGVILELLSFCVEHHSYHIKN---F---VL------------------------------NKDLLRKVLVLMKSCHTFL 233 (450)
Q Consensus 190 ll~~l~eLL~Fcv~~H~~riK~---f---il------------------------------~~~ll~rVl~Ll~~~~K~L 233 (450)
+...++++|.....+.+--.+. + ++ ....+..+..++.+++.-+
T Consensus 250 ~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~v 329 (618)
T 1w63_A 250 LQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNI 329 (618)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCch
Confidence 6666777776654443211000 0 00 0112334445677777788
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHh------h-C--chHHHHHHhhhcCCCCcchhhHHHHHHHHHHhh
Q psy10039 234 VLSSLRFMRKIIAMKDDFYNRYIIK------G-H--LFQPVIDTFNRNKGRYNLLDSAVLELFEYIKLE 293 (450)
Q Consensus 234 ~L~AlRf~R~iI~l~Defy~ryiik------~-n--Lf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir~e 293 (450)
+.+||+.+..++..+-+.+.+|... + + +=.--++++..-.+..|. ..-+-||.+|+...
T Consensus 330 r~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv-~~iv~eL~~~l~~~ 397 (618)
T 1w63_A 330 RYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI-RGMMKELLYFLDSC 397 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH-HHHHHHHHHHHHhC
Confidence 8888888888876543333222210 0 0 111123344455566663 55566777777643
No 25
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.59 E-value=0.55 Score=51.18 Aligned_cols=218 Identities=13% Similarity=0.150 Sum_probs=139.3
Q ss_pred HHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCC--ChhhHHHHHHHHHHH
Q psy10039 3 EKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAE--DIATKNAAIDILNFI 80 (450)
Q Consensus 3 ~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~--d~~ir~~atdIL~~i 80 (450)
...|..++.+ .|-.+.||++|+=|+.| ||. |+.-|..+=++.+=.+|+.+ |..+...+.|+|..+
T Consensus 23 I~~L~~Rl~~-~tl~eDRR~Av~~Lk~~---sk~---------y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l 89 (651)
T 3grl_A 23 IQKLCDRVAS-STLLDDRRNAVRALKSL---SKK---------YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNI 89 (651)
T ss_dssp HHHHHHHHHH-CCSHHHHHHHHHHHHHT---TTT---------TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-ccchhHHHHHHHHHHHH---HHH---------hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3567777866 56778999999988876 553 44445444455555566654 777777788888777
Q ss_pred HhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHH
Q psy10039 81 IEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFY 160 (450)
Q Consensus 81 ie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY 160 (450)
+.-++.-= ........ ..-+-....+.++.+.+
T Consensus 90 ~~~~~~~~-~~~~~~~~-------~~~~~~~~~d~f~~~~~--------------------------------------- 122 (651)
T 3grl_A 90 ISNDEEEE-VEENSTRQ-------SEDLGSQFTEIFIKQQE--------------------------------------- 122 (651)
T ss_dssp HCCC----------------------CHHHHHHHHHHHSTH---------------------------------------
T ss_pred hCCCCccc-cccccccc-------chHHHHHHHHHHHcCCc---------------------------------------
Confidence 65433110 00000000 01111112233333221
Q ss_pred hhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhh-hHHHHHHHhhccCCcchhHHHHH
Q psy10039 161 KYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNK-DLLRKVLVLMKSCHTFLVLSSLR 239 (450)
Q Consensus 161 ~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~-~ll~rVl~Ll~~~~K~L~L~AlR 239 (450)
.++.|+.-|-. .+...--+.+.+|+....+.+-+.+..|+.. .-+.++..+|..+...+|=-|+-
T Consensus 123 --~i~~Ll~lL~~------------~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 123 --NVTLLLSLLEE------------FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp --HHHHHHHHTTC------------CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred --cHHHHHHHhcC------------ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 12222222200 1122333667888888888888888888855 77888889999888889999999
Q ss_pred HHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCC-CCcchhhHHHHHHHHHHhhCh
Q psy10039 240 FMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKG-RYNLLDSAVLELFEYIKLEDI 295 (450)
Q Consensus 240 f~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~-R~NLlnSA~LElfe~Ir~eNi 295 (450)
++-.+.. ++.-..+-+.-.|.|+++++++...|. +.-.+-+=||.++.-+-+.|.
T Consensus 189 LL~~Lt~-~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 189 LLQALTR-SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc-CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 9988776 667777777777999999999998775 677888899999998887773
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.37 E-value=1.3 Score=48.69 Aligned_cols=212 Identities=16% Similarity=0.135 Sum_probs=132.9
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
..|...|.+++ .+.|+-++.+|.- ..+ ..+..|.++.+--.|+++|..+|..|+..|..|..+
T Consensus 118 ~~lv~~L~~~~--~~~r~~a~~~l~~----------~~~-----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~ 180 (780)
T 2z6g_A 118 PTNVQRLAEPS--QMLKHAVVNLINY----------QDD-----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK 180 (780)
T ss_dssp --------CCS--CHHHHHHHHHHHH----------HHH-----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCcc--HHHHHHHHHHHHh----------hhH-----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC
Confidence 45566666653 3556666666541 112 234578889888899999999999999999999887
Q ss_pred ChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhh
Q psy10039 84 SPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYS 163 (450)
Q Consensus 84 dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~ 163 (450)
++.. ..+.. ..-.+..|++.|-.+.++ .++...+.+|+.|-... ..+..+.+ ...
T Consensus 181 ~~~~--~~i~~----------~~~~i~~Lv~~L~~~~d~--~vr~~Aa~aL~~Ls~~~--------~~~~~i~~---~g~ 235 (780)
T 2z6g_A 181 EASR--HAIMR----------SPQMVSAIVRTMQNTNDV--ETARCTSGTLHNLSHHR--------EGLLAIFK---SGG 235 (780)
T ss_dssp HHHH--HHHTT----------CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHTSH--------HHHHHHHH---TTH
T ss_pred ChhH--HHHHh----------ccChHHHHHHHHcCCCCH--HHHHHHHHHHHHHhCCc--------hhHHHHHH---cCC
Confidence 6532 11111 224577788888776666 56888999998865321 11222222 235
Q ss_pred HHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHH
Q psy10039 164 IHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRK 243 (450)
Q Consensus 164 ~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~ 243 (450)
++.|+.-|-+. ...+....+..|.-+...+. ..+..+...+++..++.++++.+.-++-.|+.+++.
T Consensus 236 I~~Lv~lL~~~------------~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~ 302 (780)
T 2z6g_A 236 IPALVNMLGSP------------VDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 302 (780)
T ss_dssp HHHHHHHTTCS------------CHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC------------CHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66665544221 13344556666666555443 346677889999999999998776677778888884
Q ss_pred HhcCChhHHHHHHHhhCchHHHHHHhhh
Q psy10039 244 IIAMKDDFYNRYIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 244 iI~l~Defy~ryiik~nLf~PIl~~f~~ 271 (450)
+ +..++-....++..+...+++.++..
T Consensus 303 L-a~~~~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 303 L-AYGNQESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp H-HTTCHHHHHHHHTTTHHHHHHHHHTT
T ss_pred H-hcCChHHHHHHHHcCCHHHHHHHHhc
Confidence 4 44555566677888999999997764
No 27
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.01 E-value=0.52 Score=46.41 Aligned_cols=209 Identities=12% Similarity=0.090 Sum_probs=116.9
Q ss_pred HHHhhcCCCcchHhhHHHHHHHHHHHHhhh-cCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhC
Q psy10039 6 LLHLLMEENTNELRRRDLALFLREYCQFSQ-NLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFS 84 (450)
Q Consensus 6 LF~~l~~~~~~~~~rrd~v~FL~q~c~laK-~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~d 84 (450)
|...+++++.+.+-|+.++.-|..++.+.+ +.... .++.+ +++++.-.+.++|..+|..++++|..+++..
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~~~----l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SERHF----IMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH----HHHHH----HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444555654456677778877777654433 22111 12222 4566666788889999999999999999988
Q ss_pred hhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCC---------CC-ccCCchhHHH
Q psy10039 85 PSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDN---------ML-SSINKTEKCE 154 (450)
Q Consensus 85 p~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~---------m~-~~~~~~e~~~ 154 (450)
|..++.|+.+ .++..++..+ .+.++ .++.+.++.+..+.+... .. ..+.......
T Consensus 249 ~~~~~~~~~~------------~l~~~~~~~~-~~~~~--~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (462)
T 1ibr_B 249 YQYMETYMGP------------ALFAITIEAM-KSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 313 (462)
T ss_dssp GGGCTTTTTT------------THHHHHHHHH-HCSSH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCC
T ss_pred HHHHHHHHHH------------HHHHHHHHHH-cCCch--HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHH
Confidence 8765543210 3455555544 55565 678888888887765310 00 0000000112
Q ss_pred HHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchh
Q psy10039 155 FLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLV 234 (450)
Q Consensus 155 fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~ 234 (450)
++..+....++.|+.-+.....+ ...++.. .-...++.|..++..-+ + -++ ..++..+..++.+.+-..+
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d~d--~~~~~~~---~r~~a~~~L~~l~~~~~---~-~~~-~~~~~~l~~~l~~~~~~~r 383 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQDEN--DDDDDWN---PCKAAGVCLMLLATCCE---D-DIV-PHVLPFIKEHIKNPDWRYR 383 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSS--CCTTCCS---HHHHHHHHHHHHHHHTT---T-THH-HHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHhhhccHHHHHHHHhcccc--cccccch---HHHHHHHHHHHHHHhcc---H-HHH-HHHHHHHHHHhcCCChHHH
Confidence 44444555666665544332111 1111111 11223344444333322 1 122 4567777788888777799
Q ss_pred HHHHHHHHHHhcC
Q psy10039 235 LSSLRFMRKIIAM 247 (450)
Q Consensus 235 L~AlRf~R~iI~l 247 (450)
-+|+.++.++..-
T Consensus 384 ~aal~~l~~l~~~ 396 (462)
T 1ibr_B 384 DAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998853
No 28
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.89 E-value=0.29 Score=54.71 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=122.1
Q ss_pred HHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhH
Q psy10039 47 KTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGR 126 (450)
Q Consensus 47 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~ 126 (450)
+.+++.|.++.+-..|+++++.+|..|+-+|..|.. |+. .|..+.++.- +..|+.+|-. .++ .+
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~-~r~~Vv~~Ga-----------ip~Lv~LL~s-~~~--~~ 552 (810)
T 3now_A 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKE-LRGKVVQEGG-----------VKALLRMALE-GTE--KG 552 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHH-HHHHHHHTTH-----------HHHHHHHHHS-SCH--HH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHH-HHHHHHHCCC-----------HHHHHHHHcc-CCH--HH
Confidence 578899999999999999999999999999999984 555 7888887754 4445555544 344 56
Q ss_pred HHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhcc
Q psy10039 127 AVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHS 206 (450)
Q Consensus 127 ~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~ 206 (450)
+.+.+.||-.|.-..+ ++ ..|+...+...+.||+.+-..+.. .......|--|+.+..+.
T Consensus 553 k~~Aa~AL~nL~~~~~-------p~-----~~~~~~~~~~aIppLv~LL~~~~~-------~l~~~eAl~AL~NLa~~~- 612 (810)
T 3now_A 553 KRHATQALARIGITIN-------PE-----VSFSGQRSLDVIRPLLNLLQQDCT-------ALENFESLMALTNLASMN- 612 (810)
T ss_dssp HHHHHHHHHHHHHHSC-------HH-----HHTTTHHHHHTHHHHHHTTSTTSC-------HHHHHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHHhcCCC-------hh-----hhhcchhhhcHHHHHHHHhCCCCc-------HHHHHHHHHHHHHHhcCC-
Confidence 8888888887752211 01 112221111234444443321110 000012233344433332
Q ss_pred chhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhh
Q psy10039 207 YHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 207 ~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~ 271 (450)
-..+..|++.+.+.++..|+.+.+..++-.|++++.+++. .++...+++...+.+.+++.++..
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcC
Confidence 2345568889999999999999988999999999999987 455444444236888888887754
No 29
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.64 E-value=1.5 Score=43.93 Aligned_cols=217 Identities=12% Similarity=0.079 Sum_probs=134.5
Q ss_pred hHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHH--hCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHH
Q psy10039 17 ELRRRDLALFLREYCQFSQNLQPQAKENFYKTLS--SLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQ 94 (450)
Q Consensus 17 ~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv--~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~ 94 (450)
.+-|+.++.-|..+|.-.. . .+..+ ..|.++.+=..|++++..++..|+-.|..|...+-.-.|..+.+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~----~-----~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~ 168 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDV----A-----NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE 168 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCH----H-----HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH----H-----HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 3445666666655542211 1 23333 56888888889999999999999999999987622234555554
Q ss_pred hhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccC
Q psy10039 95 QAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDN 174 (450)
Q Consensus 95 q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~ 174 (450)
..- +..|+++|....++ .++...+.+|..|--- +...+..+.. -...++.|+.-|...
T Consensus 169 ~G~-----------Ip~Lv~lL~~~~~~--~~~~~A~~aL~nLs~~-------~~~nk~~i~~--~~Gai~~Lv~lL~~~ 226 (354)
T 3nmw_A 169 VGS-----------VKALMECALEVKKE--STLKSVLSALWNLSAH-------CTENKADICA--VDGALAFLVGTLTYR 226 (354)
T ss_dssp TTH-----------HHHHHHHHHHCCCH--HHHHHHHHHHHHHHTT-------CHHHHHHHHH--STTHHHHHHHHTTCC
T ss_pred CCC-----------HHHHHHHHhcCCCH--HHHHHHHHHHHHHHcc-------ChhhhHHHHH--hcCcHHHHHHHhccC
Confidence 322 56677776665565 6688888888877521 0011222221 245677777766443
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHH
Q psy10039 175 TKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNR 254 (450)
Q Consensus 175 ~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~r 254 (450)
....... -...-...+.+|+-.++ .... .|..|.+.+.+..++.||++...-++-.|++.++++.. .+.-...
T Consensus 227 ~~~~~~~-v~~~A~~aL~nLs~~~a---~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~ 299 (354)
T 3nmw_A 227 SQTNTLA-IIESGGGILRNVSSLIA---TNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQE 299 (354)
T ss_dssp CSSSCCH-HHHHHHHHHHHHHHHHT---TCHH--HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS-SCHHHHH
T ss_pred CCcccHH-HHHHHHHHHHHHHhhcc---CCHH--HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC-CCHHHHH
Confidence 2211100 00011122333322111 1222 25678899999999999998877799999999999975 4566688
Q ss_pred HHHhhCchHHHHHHhhh
Q psy10039 255 YIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 255 yiik~nLf~PIl~~f~~ 271 (450)
.|++.+.+.|+++++..
T Consensus 300 ~i~~~G~i~~Lv~LL~s 316 (354)
T 3nmw_A 300 ALWDMGAVSMLKNLIHS 316 (354)
T ss_dssp HHHHTTHHHHHHTTTTC
T ss_pred HHHHCCCHHHHHHHHhC
Confidence 99999999999997753
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.44 E-value=2.1 Score=45.52 Aligned_cols=173 Identities=13% Similarity=0.167 Sum_probs=100.9
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q psy10039 57 ALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKI 136 (450)
Q Consensus 57 vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~ 136 (450)
.+--.|.++|+.+|-+|.+.|..|+.++|..+..+. ..++ ..+.|.|+ .++....++|..
T Consensus 317 ~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~-----------------~~i~-~~l~d~d~--~Ir~~alelL~~ 376 (618)
T 1w63_A 317 ILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR-----------------STIV-DCLKDLDV--SIKRRAMELSFA 376 (618)
T ss_dssp HHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH-----------------HHHH-HGGGSSCH--HHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH-----------------HHHH-HHccCCCh--hHHHHHHHHHHH
Confidence 333346677777787777777777777776653321 1122 23466665 779999999999
Q ss_pred hcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhh
Q psy10039 137 LIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNK 216 (450)
Q Consensus 137 LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~ 216 (450)
|.++.|... --.++++++.+. +..+-..++.-++-|....+--...|
T Consensus 377 l~~~~nv~~-----iv~eL~~~l~~~------------------------d~e~r~~~v~~I~~la~k~~~~~~~~---- 423 (618)
T 1w63_A 377 LVNGNNIRG-----MMKELLYFLDSC------------------------EPEFKADCASGIFLAAEKYAPSKRWH---- 423 (618)
T ss_dssp HCCSSSTHH-----HHHHHHHHHHHC------------------------CHHHHHHHHHHHHHHHHSSCCCHHHH----
T ss_pred HcccccHHH-----HHHHHHHHHHhC------------------------CHHHHHHHHHHHHHHHHHhCccHHHH----
Confidence 999876321 123444433220 11222334455555554433222222
Q ss_pred hHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHHh----
Q psy10039 217 DLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIKL---- 292 (450)
Q Consensus 217 ~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir~---- 292 (450)
+..++.+++....+++-.++..+|.++.... ++-.+++-.|++++..
T Consensus 424 --v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p---------------------------~l~~~~v~~L~~~l~~~~~~ 474 (618)
T 1w63_A 424 --IDTIMRVLTTAGSYVRDDAVPNLIQLITNSV---------------------------EMHAYTVQRLYKAILGDYSQ 474 (618)
T ss_dssp --HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC---------------------------STHHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHhccchhHHHHHHHHHHHHhcCh---------------------------hHHHHHHHHHHHHHhccccc
Confidence 4556666666666666666777777665332 2334455556666654
Q ss_pred hChHHHHHHHHHHhHhhcc
Q psy10039 293 EDIKVLCSHVVETYGDELE 311 (450)
Q Consensus 293 eNik~Li~hlve~y~~~l~ 311 (450)
+.+...+.|++..|++.+.
T Consensus 475 ~~~~~~~~wilGEy~~~i~ 493 (618)
T 1w63_A 475 QPLVQVAAWCIGEYGDLLV 493 (618)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHhc
Confidence 4445568999999998775
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.14 E-value=2.5 Score=41.14 Aligned_cols=183 Identities=11% Similarity=0.100 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccC
Q psy10039 68 ATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSI 147 (450)
Q Consensus 68 ~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~ 147 (450)
.-|..|.++|..+++... .-+.+ .+... +..|+..++...++ .++.+.+.+|..+..-
T Consensus 55 e~k~~Al~~L~~lv~~~d-na~~~-~~~G~-----------l~~Lv~~lL~s~~~--~vr~~Aa~~Lg~ia~~------- 112 (296)
T 1xqr_A 55 QEREGALELLADLCENMD-NAADF-CQLSG-----------MHLLVGRYLEAGAA--GLRWRAAQLIGTCSQN------- 112 (296)
T ss_dssp HHHHHHHHHHHHHHTSHH-HHHHH-HHTTH-----------HHHHHHTTTTCSSH--HHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHhChh-hHHHH-HHcCC-----------HHHHHHHHHcCCCH--HHHHHHHHHHHHHHhC-------
Confidence 468889999999999543 33333 23221 34566634566666 7799999999988742
Q ss_pred CchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhc
Q psy10039 148 NKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMK 227 (450)
Q Consensus 148 ~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~ 227 (450)
+...+..+++. ..++.|+.=|.... ...+....+--|+-++++++...+.|+ ..+.+.-++.+++
T Consensus 113 n~~~~~~vv~~---g~l~~Ll~LL~~~~-----------~~~v~~~A~~ALsnl~~~~~~~~~~~~-~~ggi~~L~~lL~ 177 (296)
T 1xqr_A 113 VAAIQEQVLGL---GALRKLLRLLDRDA-----------CDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQ 177 (296)
T ss_dssp CHHHHHHHHHT---THHHHHHHHHHHCS-----------CHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHH
T ss_pred CHHHHHHHHHC---CCHHHHHHHHccCC-----------CHHHHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHHHHc
Confidence 11123333322 45666654442211 133455666777777787776555544 5678888889999
Q ss_pred cCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHH
Q psy10039 228 SCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIK 291 (450)
Q Consensus 228 ~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir 291 (450)
+.+.-++.-|+..+..+..- +.-..+++++.+.+.|++.++... +.=+--.++..+..|-
T Consensus 178 ~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~---d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 178 QQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLV 237 (296)
T ss_dssp SSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCC---ChhHHHHHHHHHHHHH
Confidence 98888999999999998765 555788999999999999987643 3334444455554443
No 32
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.03 E-value=3.1 Score=43.25 Aligned_cols=214 Identities=12% Similarity=0.078 Sum_probs=133.6
Q ss_pred HhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHH--hCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh-ChhHHHHHHHH
Q psy10039 18 LRRRDLALFLREYCQFSQNLQPQAKENFYKTLS--SLGILPALEVVLSAEDIATKNAAIDILNFIIEF-SPSFIRDYTLQ 94 (450)
Q Consensus 18 ~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv--~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~-dp~lvR~~~~~ 94 (450)
.-++.+..-|.-+|.-.. + .+..+ ..|.++.+-..|++++..++..|+-.|..|-.. |+. .|..+.+
T Consensus 215 ~l~~~Aa~aL~nLa~~~~----~-----~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~I~~ 284 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGDV----A-----NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLRE 284 (458)
T ss_dssp HHHHHHHHHHHHHHTTCH----H-----HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc----c-----cHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH-HHHHHHH
Confidence 446666666666663211 1 23333 568889998899999999999999999998775 343 4555554
Q ss_pred hhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcC-CCCCCccCCchhHHHHHHHHHhhhHHHhcccccc
Q psy10039 95 QAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILID-PDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLD 173 (450)
Q Consensus 95 q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLD-p~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~ 173 (450)
..- +..|+++|+...++ +++.....+|..|-- . ...+..+.. -..+++.|..-|..
T Consensus 285 ~Ga-----------I~~LV~lLl~s~~~--~v~~~A~~aL~nLs~~~--------~~nk~~I~~--~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 285 VGS-----------VKALMECALEVKKE--STLKSVLSALWNLSAHC--------TENKADICA--VDGALAFLVGTLTY 341 (458)
T ss_dssp TTH-----------HHHHHHHHTTCCSH--HHHHHHHHHHHHHHHHC--------HHHHHHHHH--STTHHHHHHHHTTC
T ss_pred cCC-----------HHHHHHHHhcCCCH--HHHHHHHHHHHHHccCC--------HHHHHHHHH--hcCcHHHHHHHhcC
Confidence 322 56677777765555 667777777777642 1 011223321 23467777666644
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHH
Q psy10039 174 NTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYN 253 (450)
Q Consensus 174 ~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ 253 (450)
........ -...-...+.+|+- ++..... .+..|.+.+.+..++.||++...-++-.|++.++++.. .+.-..
T Consensus 342 ~~~~~~~~-v~~~A~~aL~nLs~---~~a~~~~--~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~-~~~~~~ 414 (458)
T 3nmz_A 342 RSQTNTLA-IIESGGGILRNVSS---LIATNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQ 414 (458)
T ss_dssp CCSSSTTH-HHHHHHHHHHHHHH---HHTTCHH--HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS-SCHHHH
T ss_pred CCCcchHH-HHHHHHHHHHHHHh---cccCCHH--HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc-CCHHHH
Confidence 32111000 00001122222221 1112222 25568899999999999998877799999999999975 355668
Q ss_pred HHHHhhCchHHHHHHhhh
Q psy10039 254 RYIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 254 ryiik~nLf~PIl~~f~~ 271 (450)
.+|++.+.+.|+++++..
T Consensus 415 ~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 415 EALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp HHHHHHTHHHHHHTTTTC
T ss_pred HHHHHCCCHHHHHHHHhC
Confidence 999999999999997753
No 33
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.93 E-value=0.47 Score=45.96 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=102.6
Q ss_pred hCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHH
Q psy10039 51 SLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQL 130 (450)
Q Consensus 51 ~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql 130 (450)
..+.|.++...|...|+.++..|.=+|=-++.-=|...|.-.++. ++.-+|+++ .+.|. ++....
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~------------~Ld~iI~ll-k~~dE--kval~A 95 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER------------HLDVFINAL-SQENE--KVTIKA 95 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH------------HHHHHHHTC-CSTTH--HHHHHH
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH------------HHHHHHHHH-hccch--hHHHHH
Confidence 344566666777777888888777777777777666666554443 477788766 44554 889999
Q ss_pred HHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhh
Q psy10039 131 MSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIK 210 (450)
Q Consensus 131 ~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK 210 (450)
+.+|++||...++.. . =|.+.++.|..-+.. ....+..++.|.|.-. |
T Consensus 96 ~r~L~~LLe~vpL~~------~------~y~Kl~~aL~dlik~------------~~~il~~eaae~Lgkl--------k 143 (265)
T 3b2a_A 96 LRALGYLVKDVPMGS------K------TFLKAAKTLVSLLES------------PDDMMRIETIDVLSKL--------Q 143 (265)
T ss_dssp HHHHHHHHTTCCBCH------H------HHHHHHHHHHHHTTS------------CCHHHHHHHHHHHHHC--------C
T ss_pred HHHHHHHHcCCCCCH------H------HHHHHHHHHHHHhcC------------CCchHHHHHHHHhCcC--------C
Confidence 999999998765432 1 256666666443321 2234555666766544 2
Q ss_pred hhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcC
Q psy10039 211 NFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAM 247 (450)
Q Consensus 211 ~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l 247 (450)
---....+...+..|+.|++..++.+|+|++-.+-+.
T Consensus 144 v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 144 PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 2223456778888999999999999999999998773
No 34
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.39 E-value=5.1 Score=39.18 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcC
Q psy10039 189 QLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAM 247 (450)
Q Consensus 189 ~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l 247 (450)
.+...+|+.|.-++..++-.++.|+-. +++.-++..++..+.-++..|+.|+.++...
T Consensus 232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 232 RVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 455567888888888887666666543 7788777778887778999999999988754
No 35
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=92.89 E-value=4.6 Score=41.09 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=132.5
Q ss_pred ChHHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHH
Q psy10039 1 MAEKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFI 80 (450)
Q Consensus 1 ~~~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~i 80 (450)
|....|-..|++++ .+-|..++..|+.+|. + .++.| ..+++.|.++.+=-.|+++++.++..|+-.|..|
T Consensus 2 ~~l~~lv~~L~s~~--~~~q~~A~~~L~~l~~---~-~~~~~----~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL 71 (457)
T 1xm9_A 2 LTIPKAVQYLSSQD--EKYQAIGAYYIQHTCF---Q-DESAK----QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL 71 (457)
T ss_dssp CCHHHHHHHHHSSC--THHHHHHHHHHHHHTS---S-CSSHH----HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCC--HHHHHHHHHHHHHHHc---C-ChHHH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45677888888764 4678899999998773 1 12334 3566889999999999999999999999999999
Q ss_pred HhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHH
Q psy10039 81 IEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFY 160 (450)
Q Consensus 81 ie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY 160 (450)
.-+++. .|..+.+..- +..|+++|-...++ .++.+.+.+|..|---+ .-+..+++
T Consensus 72 a~~~~~-~k~~i~~~G~-----------i~~Lv~lL~~~~~~--~~~~~a~~aL~nLa~~~--------~~~~~i~~--- 126 (457)
T 1xm9_A 72 VFRSTT-NKLETRRQNG-----------IREAVSLLRRTGNA--EIQKQLTGLLWNLSSTD--------ELKEELIA--- 126 (457)
T ss_dssp HSSCHH-HHHHHHHTTC-----------HHHHHHHHTTCCCH--HHHHHHHHHHHHHHTSS--------STHHHHHH---
T ss_pred hcCCHH-HHHHHHHcCC-----------HHHHHHHHhhCCCH--HHHHHHHHHHHHHhcCH--------HhHHHHHh---
Confidence 887554 3555554432 55667666534455 67999999998886421 12333432
Q ss_pred hhhHHHhccccccC---C-CCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhh-hHHHHHHHhhcc------C
Q psy10039 161 KYSIHLLMDPLLDN---T-KKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNK-DLLRKVLVLMKS------C 229 (450)
Q Consensus 161 ~~~~~~L~~PL~~~---~-~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~-~ll~rVl~Ll~~------~ 229 (450)
..++.|+.-|... . ..............++.+.+-.|+.+..+ + ..|..+.+. +++..++.|++. .
T Consensus 127 -g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 203 (457)
T 1xm9_A 127 -DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-D-AGRQTMRNYSGLIDSLMAYVQNCVAASRC 203 (457)
T ss_dssp -HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-H-HHHHHHTTSTTHHHHHHHHHHHHHHHTCT
T ss_pred -ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-H-HHHHHHHHcCCCHHHHHHHHHhhccccCC
Confidence 6677776655320 0 00000000012345666666666665554 2 346678886 999999998875 2
Q ss_pred CcchhHHHHHHHHHHh
Q psy10039 230 HTFLVLSSLRFMRKII 245 (450)
Q Consensus 230 ~K~L~L~AlRf~R~iI 245 (450)
..-.+-.|+..+|++.
T Consensus 204 ~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 204 DDKSVENCMCVLHNLS 219 (457)
T ss_dssp TCTTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhcc
Confidence 2235556677777763
No 36
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.61 E-value=6 Score=36.11 Aligned_cols=194 Identities=13% Similarity=0.150 Sum_probs=125.8
Q ss_pred HHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHH-hCCChhhHHHHHHHHHHHHhh
Q psy10039 5 DLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVL-SAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 5 eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L-~~~d~~ir~~atdIL~~iie~ 83 (450)
.++..+. +.+-..|+.++.-|..++.-...+.... |. .+++++.-.| ++.+..+|..|+..|..+...
T Consensus 19 ~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~----~~-----~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 19 DFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGE----YG-----ALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp THHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCC----CH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCC----HH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4556554 3466789999999999988632332222 12 2345666678 489999999999999999853
Q ss_pred ChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhh
Q psy10039 84 SPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYS 163 (450)
Q Consensus 84 dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~ 163 (450)
++..+... -..++..|++.| .|+.+ .++....++|+.++...+ ++.+
T Consensus 88 ----l~~~~~~~---------~~~ilp~ll~~l-~d~~~--~vr~~a~~aL~~~~~~~~-----------------~~~l 134 (242)
T 2qk2_A 88 ----LAKRFSNY---------ASACVPSLLEKF-KEKKP--NVVTALREAIDAIYASTS-----------------LEAQ 134 (242)
T ss_dssp ----HGGGGHHH---------HHHHHHHHHHGG-GCCCH--HHHHHHHHHHHHHHTTSC-----------------HHHH
T ss_pred ----HhhhHHHH---------HHHHHHHHHHHH-cCCCH--HHHHHHHHHHHHHHHcCC-----------------HHHH
Confidence 22211111 234566666654 56665 779999999999986311 2344
Q ss_pred HHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhcc-c-hhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHH
Q psy10039 164 IHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHS-Y-HIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFM 241 (450)
Q Consensus 164 ~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~-~-riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~ 241 (450)
++.|+.-|-. ....+-..++.+|.-|+..|. - ....|+ ..++..+..++..++.-+|-+|..++
T Consensus 135 l~~l~~~l~~------------~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 135 QESIVESLSN------------KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHHHHTTC------------SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC------------CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 5555443321 123455578888888888874 2 234444 47888899999888888999999998
Q ss_pred HHHhc-CChhHHHHHH
Q psy10039 242 RKIIA-MKDDFYNRYI 256 (450)
Q Consensus 242 R~iI~-l~Defy~ryi 256 (450)
-.+.. ...+.+..|+
T Consensus 201 ~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 201 GTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHCHHHHGGGG
T ss_pred HHHHHHcCHHHHHHHH
Confidence 88642 3344454444
No 37
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=92.60 E-value=9.6 Score=41.45 Aligned_cols=182 Identities=12% Similarity=0.097 Sum_probs=104.3
Q ss_pred CCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHH
Q psy10039 53 GILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMS 132 (450)
Q Consensus 53 GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~e 132 (450)
++++.+--.+++++..+|..++..|..+++..|..++.|+- .++..+++.+ .+.++ .++.+.++
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-------------~l~~~l~~~~-~~~~~--~vr~~a~e 278 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-------------NIVEYMLQRT-QDQDE--NVALEACE 278 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-------------HHHHHHHHHH-TCSSH--HHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-------------HHHHHHHHHc-cCCcH--HHHHHHHH
Confidence 34555556677889999999999999999998887766532 2455555544 45555 77999999
Q ss_pred HHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhcccccc---------CCCCCcccc----cccchHHHHHHHHHHHH
Q psy10039 133 ILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLD---------NTKKDEVQV----DSYHNAQLLGVILELLS 199 (450)
Q Consensus 133 aLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~---------~~~~~~~~~----~~~~~~~ll~~l~eLL~ 199 (450)
.+..+.+... -..++.-+..+.++.|+.-+.. ...++.... ....-...-...++-|+
T Consensus 279 ~l~~l~~~~~---------~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 279 FWLTLAEQPI---------CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHTTSTT---------HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcchh---------HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence 9999887531 1123444455555655544421 110010000 00111111122222222
Q ss_pred HHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHh
Q psy10039 200 FCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTF 269 (450)
Q Consensus 200 Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f 269 (450)
-+... .++ ..++..+..++.+.+-..|-+|++.+-++..--.+.+..|+ ..++.+++..+
T Consensus 350 ~~~~~-------~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l 409 (852)
T 4fdd_A 350 NVYRD-------ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCL 409 (852)
T ss_dssp HHHGG-------GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHT
T ss_pred HhccH-------HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHc
Confidence 22211 222 35677777888888777999999999999876665444332 33444445444
No 38
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.54 E-value=13 Score=39.79 Aligned_cols=230 Identities=16% Similarity=0.180 Sum_probs=124.3
Q ss_pred HHHhhcCCCcchHhhHHHHHHHHHHHHh-hhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhC
Q psy10039 6 LLHLLMEENTNELRRRDLALFLREYCQF-SQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFS 84 (450)
Q Consensus 6 LF~~l~~~~~~~~~rrd~v~FL~q~c~l-aK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~d 84 (450)
|...+++++.+.+-|..++.-|..++.. ..+++... ++. .+++++.-++.++|..+|..+++.|..+++..
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~----~~~----~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 248 (876)
T 1qgr_A 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES----ERH----FIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHH----HHH----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH----HHH----HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3344555544566677787777776643 22322111 111 25666666778889999999999999999999
Q ss_pred hhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCC---------cc-CCchhHHH
Q psy10039 85 PSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNML---------SS-INKTEKCE 154 (450)
Q Consensus 85 p~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~---------~~-~~~~e~~~ 154 (450)
|..+..|+. ..++..++..+ .+.++ .++.+.++.+..+.+..... .+ ........
T Consensus 249 ~~~~~~~~~------------~~l~~~~~~~~-~~~~~--~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (876)
T 1qgr_A 249 YQYMETYMG------------PALFAITIEAM-KSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 313 (876)
T ss_dssp GGGCHHHHT------------TTHHHHHHHHH-TCSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCC
T ss_pred HHHHHHHHH------------HHHHHHHHHHh-cCCch--HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHH
Confidence 888766542 13456666554 44454 67888888888886531000 00 00000012
Q ss_pred HHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchh
Q psy10039 155 FLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLV 234 (450)
Q Consensus 155 fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~ 234 (450)
++.-+.+..++.|+.-+......+ ..++......-...+..|+-+... .++ ..++..+...+...+-.++
T Consensus 314 ~~~~~~~~ll~~ll~~l~~~~~d~--~~~~~~~r~~a~~~l~~l~~~~~~-------~~~-~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 314 YAKGALQYLVPILTQTLTKQDEND--DDDDWNPCKAAGVCLMLLATCCED-------DIV-PHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSC--CTTCCCHHHHHHHHHHHHHHHHGG-------GGH-HHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHhHHHHHHhhcccccc--cccccHHHHHHHHHHHHHHHHCcH-------hhH-HHHHHHHHHHccCCChHHH
Confidence 333334555555554433221100 011111111111122222222211 122 3566677777777777799
Q ss_pred HHHHHHHHHHhcCCh-hHHHHHHHhhCchHHHHHHhh
Q psy10039 235 LSSLRFMRKIIAMKD-DFYNRYIIKGHLFQPVIDTFN 270 (450)
Q Consensus 235 L~AlRf~R~iI~l~D-efy~ryiik~nLf~PIl~~f~ 270 (450)
-+|++++..+..--. +.+..|+ ..++..++..+.
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~ 418 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMK 418 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhC
Confidence 999999998876433 4455554 336666666664
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=92.15 E-value=2.3 Score=46.41 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHH
Q psy10039 189 QLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDT 268 (450)
Q Consensus 189 ~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~ 268 (450)
.+....+++++-+++.=.-+++.|+...+++.-++.++..+..-++-.|.+++..+..---+.+..|+ ..++..
T Consensus 601 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l------~~~lp~ 674 (852)
T 4fdd_A 601 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI------ADFMPI 674 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH------HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHH------HHHHHH
Confidence 35677889998888777777888887889999999988877777999999999998732223333332 223333
Q ss_pred hhhcC--CCCcchhhHHHHHHHHHHh--hChHHHHHHHHHHhHhhcc
Q psy10039 269 FNRNK--GRYNLLDSAVLELFEYIKL--EDIKVLCSHVVETYGDELE 311 (450)
Q Consensus 269 f~~n~--~R~NLlnSA~LElfe~Ir~--eNik~Li~hlve~y~~~l~ 311 (450)
+.++. +.+...+.||--+=++++. +++.+.+..++...-..|+
T Consensus 675 l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~ 721 (852)
T 4fdd_A 675 LGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIIN 721 (852)
T ss_dssp HHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHT
T ss_pred HHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhC
Confidence 33333 2334455555444444332 2455444444444444443
No 40
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.77 E-value=4.6 Score=40.70 Aligned_cols=177 Identities=18% Similarity=0.237 Sum_probs=109.1
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChh---HHHHHHHHhhhhcccCCCcccHHHHHHHH
Q psy10039 39 PQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPS---FIRDYTLQQAACISREEQDPMLVNVIIEQ 115 (450)
Q Consensus 39 ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~---lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ 115 (450)
+.+..++...+.+++++..+-..|..=+-..|.-++.|+..++-+.+. ..-.|+... +-++.+|+.+
T Consensus 64 ~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~----------peil~~L~~g 133 (341)
T 1upk_A 64 TEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ----------QNILFMLLKG 133 (341)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC----------THHHHHHHHG
T ss_pred HHHHHHHHHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC----------HHHHHHHHHh
Confidence 445667888889999999998888888999999999998888887543 122444432 2222333222
Q ss_pred h--------------------------hcC----------CCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHH
Q psy10039 116 M--------------------------VSD----------TDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYF 159 (450)
Q Consensus 116 l--------------------------l~d----------~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~F 159 (450)
- +.+ ..|...+.+-.+..+|.||- .++.--.+||..-
T Consensus 134 Ye~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt-------~Hk~lvaefL~~n 206 (341)
T 1upk_A 134 YESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLT-------RHKLLSAEFLEQH 206 (341)
T ss_dssp GGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHH-------SSHHHHHHHHHHT
T ss_pred hccchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-------ccHHHHHHHHHHh
Confidence 2 111 01223334444444444442 1333446888877
Q ss_pred HhhhHHHhccccccCCCCCcccccccc-hHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHH
Q psy10039 160 YKYSIHLLMDPLLDNTKKDEVQVDSYH-NAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSL 238 (450)
Q Consensus 160 Y~~~~~~L~~PL~~~~~~~~~~~~~~~-~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~Al 238 (450)
|+......-+ |+... +|. ..+-+-.|-||| .-+++.--+..||=+.+-++-+..||+.+.|-++.-|.
T Consensus 207 yd~Ff~~y~~-Ll~S~--------NYVTkRQSlKLLgelL--ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAF 275 (341)
T 1upk_A 207 YDRFFSEYEK-LLHSE--------NYVTKRQSLKLLGELL--LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAF 275 (341)
T ss_dssp HHHHHHHHHH-HTTCS--------SHHHHHHHHHHHHHHH--HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHH-HhcCC--------cchhHHHHHHHHHHHH--hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhh
Confidence 8777666655 55432 243 233333344443 12444444577999999999999999999999999998
Q ss_pred HHHHH
Q psy10039 239 RFMRK 243 (450)
Q Consensus 239 Rf~R~ 243 (450)
-.||-
T Consensus 276 hVFKv 280 (341)
T 1upk_A 276 HVFKV 280 (341)
T ss_dssp HHHHH
T ss_pred hheee
Confidence 76553
No 41
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=91.32 E-value=6.6 Score=43.84 Aligned_cols=153 Identities=8% Similarity=-0.019 Sum_probs=100.3
Q ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHh--hhHHHhccccccCCCCCcccccccc
Q psy10039 109 VNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYK--YSIHLLMDPLLDNTKKDEVQVDSYH 186 (450)
Q Consensus 109 l~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~--~~~~~L~~PL~~~~~~~~~~~~~~~ 186 (450)
+..|+++|.. .++ .++....++|.-|.-. ...+.. |-+ ..++.|++.+-. +
T Consensus 625 l~~Lv~LL~s-~~~--~Vq~~A~~~L~NLa~~--------~~~~~~----~v~~~g~l~~Lv~LL~s----~-------- 677 (810)
T 3now_A 625 VSKIEYYLME-DHL--YLTRAAAQCLCNLVMS--------EDVIKM----FEGNNDRVKFLALLCED----E-------- 677 (810)
T ss_dssp HHHHHHHHHS-CCT--THHHHHHHHHHHHTTS--------HHHHHH----HHSSSSHHHHHHHGGGC----S--------
T ss_pred HHHHHHHHcC-CCH--HHHHHHHHHHHHHhCC--------hHHHHH----HHhccCcHHHHHHHhcC----C--------
Confidence 5556666554 444 6788888888877632 112222 222 345555544322 1
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhhhhhh-hhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHH
Q psy10039 187 NAQLLGVILELLSFCVEHHSYHIKNFVLN-KDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPV 265 (450)
Q Consensus 187 ~~~ll~~l~eLL~Fcv~~H~~riK~fil~-~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PI 265 (450)
+..+....|=.|+....+++--++ .|+. .+.+..+..|+.+.+--++-.|+..+.+++.-.+ -+.++|++.|.+.|+
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~~~~-~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~-e~~~~l~e~G~i~~L 755 (810)
T 3now_A 678 DEETATACAGALAIITSVSVKCCE-KILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE-EIAKKLFETDIMELL 755 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHH-HHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHTSTHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHH-HHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHH
Confidence 122334455555555554444445 4556 8999999999999988899999999999998544 568999999999999
Q ss_pred HHHhhhcCCCCcchhhHHHHHHHHH
Q psy10039 266 IDTFNRNKGRYNLLDSAVLELFEYI 290 (450)
Q Consensus 266 l~~f~~n~~R~NLlnSA~LElfe~I 290 (450)
.+++....+|++=+--.+++-++-|
T Consensus 756 ~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 756 SGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp TTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCcHHHHHHHHHHHHHH
Confidence 9998776556665555555554444
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=89.92 E-value=7 Score=43.46 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=131.0
Q ss_pred HHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhc-------ccCCC----cccHHHHHHHH
Q psy10039 47 KTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACI-------SREEQ----DPMLVNVIIEQ 115 (450)
Q Consensus 47 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~-------s~~e~----~~~Ll~~Li~~ 115 (450)
+.+++.|..+++--.++++++.+|..++-+|..|-.. .--|..+.+|.--. +..+. ...=...|.++
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999754 33577777775300 00000 01112223333
Q ss_pred hhcCCCcchhHH----HHHHHHHHHhcCCC-CCCc-------------------------cCCchhHHHHHHHHHh--hh
Q psy10039 116 MVSDTDPELGRA----VQLMSILKILIDPD-NMLS-------------------------SINKTEKCEFLNYFYK--YS 163 (450)
Q Consensus 116 ll~d~d~~LG~~----~Ql~eaLk~LLDp~-~m~~-------------------------~~~~~e~~~fl~~FY~--~~ 163 (450)
+++ .||++... .-...-|..||.|. ...+ +.+..+-++--...-+ .+
T Consensus 529 lis-~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 529 LIF-TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp HHT-SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred Hhc-CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 322 23333110 01233444444421 1000 0000000111111122 24
Q ss_pred HHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchh-hhhh-hhhhH----HHHHHHhhccCCcchhHHH
Q psy10039 164 IHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHI-KNFV-LNKDL----LRKVLVLMKSCHTFLVLSS 237 (450)
Q Consensus 164 ~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~ri-K~fi-l~~~l----l~rVl~Ll~~~~K~L~L~A 237 (450)
++.|...|.+. ...+....||++|-.+. ++--+ +.|+ ..+.- +.-++.|+.+.+--++-+|
T Consensus 608 ~~~L~~LL~s~------------n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AA 674 (778)
T 3opb_A 608 WSTIENLMLDE------------NVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAV 674 (778)
T ss_dssp HHHHHHGGGCS------------SHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHhCC------------CHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHH
Confidence 55555555432 12456668888888775 45433 3343 33222 4456678888888899999
Q ss_pred HHHHHHHhcCChhHHHHHHHhh-CchHHHHHHhhhcCCCCcchhhHHHHHHHHH
Q psy10039 238 LRFMRKIIAMKDDFYNRYIIKG-HLFQPVIDTFNRNKGRYNLLDSAVLELFEYI 290 (450)
Q Consensus 238 lRf~R~iI~l~Defy~ryiik~-nLf~PIl~~f~~n~~R~NLlnSA~LElfe~I 290 (450)
.-.+-.+-+ .++...+-|++. +.+++++.+|.+..+..+|...++.=|....
T Consensus 675 agALAnLts-~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 675 AAIFANIAT-TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHH-HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 988888743 477778888887 7999999999987677777776665555444
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.28 E-value=25 Score=37.40 Aligned_cols=217 Identities=15% Similarity=0.117 Sum_probs=120.8
Q ss_pred HHhhcCCCcchHhhHHHHHHHHHHHHhhh-cCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhCh
Q psy10039 7 LHLLMEENTNELRRRDLALFLREYCQFSQ-NLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSP 85 (450)
Q Consensus 7 F~~l~~~~~~~~~rrd~v~FL~q~c~laK-~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp 85 (450)
+..+.+++.+.+-|..++.-|..++.+.+ ++.... ++ ..+++++.-++.+++..+|..++++|..+++..|
T Consensus 185 ~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~----~~----~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~ 256 (861)
T 2bpt_A 185 VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG----ER----NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY 256 (861)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHH----HH----HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChh----HH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34445555566777788777777665433 222110 01 1245666667888999999999999999999888
Q ss_pred hHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCc------cCCchhHHHHHHHH
Q psy10039 86 SFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLS------SINKTEKCEFLNYF 159 (450)
Q Consensus 86 ~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~------~~~~~e~~~fl~~F 159 (450)
..+..++.+ .++.+++.. +.+.++ .++.+..+++..+.+...... +..+.....|+.-+
T Consensus 257 ~~~~~~l~~------------~l~~~~~~~-~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (861)
T 2bpt_A 257 TFMKPYMEQ------------ALYALTIAT-MKSPND--KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS 321 (861)
T ss_dssp GGCHHHHHH------------THHHHHHHH-TTCSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH
T ss_pred HHHHHHHHH------------HHHHHHHHH-HcCCcH--HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH
Confidence 777665432 234444443 355555 779999999988875311000 00000011244445
Q ss_pred HhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHH
Q psy10039 160 YKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLR 239 (450)
Q Consensus 160 Y~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlR 239 (450)
+...++.|+.-+.....++ ..+.+ .+....++.|.-+..+-+ ..++ ..++..+..++.+.+-..+-+|+.
T Consensus 322 ~~~il~~ll~~l~~~~~d~--~d~~~---~~r~~a~~~L~~l~~~~~----~~~~-~~l~~~l~~~l~~~~~~~r~~a~~ 391 (861)
T 2bpt_A 322 IKDVVPNLLNLLTRQNEDP--EDDDW---NVSMSAGACLQLFAQNCG----NHIL-EPVLEFVEQNITADNWRNREAAVM 391 (861)
T ss_dssp HHHHHHHHHHHTTCCCCC---CCCCC---HHHHHHHHHHHHHHHHHG----GGGH-HHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc--ccccC---cHHHHHHHHHHHHHHHcc----HhHH-HHHHHHHHHHcCCCChhHHHHHHH
Confidence 5666677666554322111 01111 122223334433333221 1122 345666667777776669999999
Q ss_pred HHHHHhcCCh-hHHHHHH
Q psy10039 240 FMRKIIAMKD-DFYNRYI 256 (450)
Q Consensus 240 f~R~iI~l~D-efy~ryi 256 (450)
++-++...-. +.+..|+
T Consensus 392 ~l~~i~~~~~~~~~~~~l 409 (861)
T 2bpt_A 392 AFGSIMDGPDKVQRTYYV 409 (861)
T ss_dssp HHHHTSSSSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 9999886543 4445554
No 44
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=88.81 E-value=27 Score=37.16 Aligned_cols=242 Identities=15% Similarity=0.185 Sum_probs=130.4
Q ss_pred HHHHhhcCCCcchHhhHHHHHHHHHHHHhhhc-C-CchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 5 DLLHLLMEENTNELRRRDLALFLREYCQFSQN-L-QPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 5 eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~-L-Q~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
.|+..++++ +..-|..++..|-++|..... + ..+ ++. .+++.+--+|+++ +.+|..++..|..+++
T Consensus 415 ~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~----~~~-----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 415 SILNLMNDQ--SLQVKETTAWCIGRIADSVAESIDPQQ----HLP-----GVVQACLIGLQDH-PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHGGGCS--CHHHHHHHHHHHHHHHHHHGGGSCTTT----THH-----HHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC--cHHHHHHHHHHHHHHHHHhhhhcCCHH----HHH-----HHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 355555554 334455555566666654332 1 111 122 2244444556665 8899999988888877
Q ss_pred hC----hhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHH
Q psy10039 83 FS----PSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNY 158 (450)
Q Consensus 83 ~d----p~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~ 158 (450)
.- +..+..|+ ..++..|++.+-. .|++-.++..++++|..|....+ .+...|+.
T Consensus 483 ~~~~~~~~~l~~~~-------------~~il~~L~~~l~~-~d~~~~vr~~a~~al~~l~~~~~-------~~~~~~~~- 540 (861)
T 2bpt_A 483 QLAEATPSPIYNFY-------------PALVDGLIGAANR-IDNEFNARASAFSALTTMVEYAT-------DTVAETSA- 540 (861)
T ss_dssp HHSSSSSCGGGGGH-------------HHHHHHHHHHHTC-SCCGGGHHHHHHHHHHHHHHHCC-------GGGHHHHH-
T ss_pred hcccccchhhHHHH-------------HHHHHHHHHHHhC-cCcchHHHHHHHHHHHHHHHHcc-------hhhHHHHH-
Confidence 41 12222221 2345556665542 23222679899999999986421 11222333
Q ss_pred HHhhhHHHhccccccCCCCC-cccc--cccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCc-chh
Q psy10039 159 FYKYSIHLLMDPLLDNTKKD-EVQV--DSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHT-FLV 234 (450)
Q Consensus 159 FY~~~~~~L~~PL~~~~~~~-~~~~--~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K-~L~ 234 (450)
+.++.++.-|.....-. .... +......+...+++.|..+++.-+-.+..|+ ..++..++.++...+. .++
T Consensus 541 ---~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~v~ 615 (861)
T 2bpt_A 541 ---SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKKDSAFIE 615 (861)
T ss_dssp ---HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHSTTGGGTH
T ss_pred ---HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHccCCCCcHH
Confidence 33343433332210000 0000 0012334667888888888776655555443 4788888888888776 788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHH
Q psy10039 235 LSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYI 290 (450)
Q Consensus 235 L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~I 290 (450)
-.|+.++.+++..-.+-+..|+-+ ++.+++..+. .+.++ +-.++++++..|
T Consensus 616 ~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~--~~~~~-vr~~a~~~l~~l 666 (861)
T 2bpt_A 616 DDVFYAISALAASLGKGFEKYLET--FSPYLLKALN--QVDSP-VSITAVGFIADI 666 (861)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHH--CTTSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhc--cccHH-HHHHHHHHHHHH
Confidence 999999888765433334455543 5666666662 22333 444555555544
No 45
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=88.65 E-value=6.6 Score=35.84 Aligned_cols=162 Identities=11% Similarity=0.167 Sum_probs=102.0
Q ss_pred HHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcC
Q psy10039 60 VVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILID 139 (450)
Q Consensus 60 ~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLD 139 (450)
-.+.+.+-..|..|++-|..+++..|... . .+-..++..|.+.|-.|.++ .++...+.+|..|..
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~------~-------~~~~~i~~~L~~~l~kd~~~--~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLE------N-------GEYGALVSALKKVITKDSNV--VLVAMAGKCLALLAK 86 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBC------C-------CCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCC------C-------CCHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHH
Confidence 35678899999999999999998754331 1 11234567777665457775 667788888887773
Q ss_pred CCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHH
Q psy10039 140 PDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLL 219 (450)
Q Consensus 140 p~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll 219 (450)
. .+ . .| ..++..++.+|+..-.+.+ ..+-...++.|.-|+...++ ..++
T Consensus 87 ~---l~-------~----~~-~~~~~~ilp~ll~~l~d~~--------~~vr~~a~~aL~~~~~~~~~--------~~ll 135 (242)
T 2qk2_A 87 G---LA-------K----RF-SNYASACVPSLLEKFKEKK--------PNVVTALREAIDAIYASTSL--------EAQQ 135 (242)
T ss_dssp H---HG-------G----GG-HHHHHHHHHHHHHGGGCCC--------HHHHHHHHHHHHHHHTTSCH--------HHHH
T ss_pred H---Hh-------h----hH-HHHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHHHHcCCH--------HHHH
Confidence 1 11 1 12 2344555556555432211 23444566666666554331 4678
Q ss_pred HHHHHhhccCCcchhHHHHHHHHHHhcCC--hhHHHHHHHhhCchHHHHHHh
Q psy10039 220 RKVLVLMKSCHTFLVLSSLRFMRKIIAMK--DDFYNRYIIKGHLFQPVIDTF 269 (450)
Q Consensus 220 ~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~--Defy~ryiik~nLf~PIl~~f 269 (450)
..+...+..+...++..++.++-.++... +.+...|+ ..+...++.++
T Consensus 136 ~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l 185 (242)
T 2qk2_A 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTL 185 (242)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHh
Confidence 88888888887789999999999998763 33455555 23444444544
No 46
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=88.13 E-value=19 Score=40.85 Aligned_cols=228 Identities=11% Similarity=0.102 Sum_probs=124.9
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhh-cCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQ-NLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK-~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
..|+..+.++ +.+-|+.+...|.+...-.. .+.+..... +++.+--+|.+++..+|.+|+..|..+++
T Consensus 9 ~~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~---------il~~Ll~~L~d~~~~vR~~A~~~L~~l~~ 77 (1230)
T 1u6g_C 9 SNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERK---------VVKMILKLLEDKNGEVQNLAVKCLGPLVS 77 (1230)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHH---------HHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHH---------HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3455665554 56677878777776543211 111111222 23344445678899999999999999887
Q ss_pred hChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhh
Q psy10039 83 FSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKY 162 (450)
Q Consensus 83 ~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~ 162 (450)
.-+.-.+ ..++..|++.|. |.++ .++.-...+|..+..- +.. ......+...+++.
T Consensus 78 ~~~~~~~----------------~~i~~~Ll~~l~-d~~~--~vR~~a~~~L~~i~~~--l~~---~~~~~~~~~~~~~~ 133 (1230)
T 1u6g_C 78 KVKEYQV----------------ETIVDTLCTNML-SDKE--QLRDISSIGLKTVIGE--LPP---ASSGSALAANVCKK 133 (1230)
T ss_dssp TSCHHHH----------------HHHHHHHHHHTT-CSSS--HHHHHHHHHHHHHHHH--CC--------CCTHHHHHHH
T ss_pred hCCHHHH----------------HHHHHHHHHHhc-CCcH--HHHHHHHHHHHHHHHh--CCC---cccccchHHHHHHH
Confidence 6544111 234555666543 4444 5576677777766531 000 00001234455666
Q ss_pred hHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHH
Q psy10039 163 SIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMR 242 (450)
Q Consensus 163 ~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R 242 (450)
.++.|+.-+-+. +. ...-...++.|+-+....+-.+..|+ ..++..++.++...+..++-.|++++.
T Consensus 134 llp~L~~~l~~~---~~--------~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 134 ITGRLTSAIAKQ---ED--------VSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp HHHHHHHHHSCC---SC--------HHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---Cc--------hHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 777776655321 11 12223344555444443333333333 678888888898888889999999999
Q ss_pred HHhcCC-hhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHH
Q psy10039 243 KIIAMK-DDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLEL 286 (450)
Q Consensus 243 ~iI~l~-Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LEl 286 (450)
.++..- +++ -..++.+++..+..... ......||.-+
T Consensus 201 ~l~~~~~~~~------~~~~l~~l~~~L~~~~~-~~~r~~a~~~l 238 (1230)
T 1u6g_C 201 HLVMSCGNIV------FVDLIEHLLSELSKNDS-MSTTRTYIQCI 238 (1230)
T ss_dssp HHTTTC----------CTTHHHHHHHHHHHTCS-SCSCTTHHHHH
T ss_pred HHHHhcCHHH------HHHHHHHHHHHhccCCc-hhHHHHHHHHH
Confidence 987654 333 12345566666655322 23444444333
No 47
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=87.98 E-value=31 Score=36.80 Aligned_cols=277 Identities=11% Similarity=0.057 Sum_probs=139.3
Q ss_pred HHHHhhcCCCcchHhhHHHHHHHHHHHHhhhc-C-CchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 5 DLLHLLMEENTNELRRRDLALFLREYCQFSQN-L-QPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 5 eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~-L-Q~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
-|+..++|+. ..-|..++.-|.++|..... . ..+. +. .+++.+-.+|.++ +.+|..++-.|..+++
T Consensus 412 ~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~----l~-----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 412 TLIELMKDPS--VVVRDTAAWTVGRICELLPEAAINDVY----LA-----PLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHTCSS--HHHHHHHHHHHHHHHHHCGGGTSSTTT----HH-----HHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC--HHHHHHHHHHHHHHHHhCchhcccHHH----HH-----HHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 4556666544 45577777778877776432 1 1111 11 2334444556664 7889999988888886
Q ss_pred hChhHHHHHHHHhhhhc-ccCCC----cccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHH
Q psy10039 83 FSPSFIRDYTLQQAACI-SREEQ----DPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLN 157 (450)
Q Consensus 83 ~dp~lvR~~~~~q~~~~-s~~e~----~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~ 157 (450)
.-... . ..+.... ...+. -..++..|...+-......-.++..++++|..|...-+ .+...++.
T Consensus 480 ~~~~~--~--~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~-------~~~~~~~~ 548 (876)
T 1qgr_A 480 AAYEA--A--DVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA-------KDCYPAVQ 548 (876)
T ss_dssp HHHHT--T--SCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC-------STTHHHHH
T ss_pred Hhhhc--c--ccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc-------hhhHHHHH
Confidence 42100 0 0000000 00000 12345555554433211012568889999999886421 12233444
Q ss_pred HHHhhhHHHhccccccCCCCCccccccc-chHHHHHHHHHHHHHHHhhcc-chhhhhhhhhhHHHHHHHhhccCC--cch
Q psy10039 158 YFYKYSIHLLMDPLLDNTKKDEVQVDSY-HNAQLLGVILELLSFCVEHHS-YHIKNFVLNKDLLRKVLVLMKSCH--TFL 233 (450)
Q Consensus 158 ~FY~~~~~~L~~PL~~~~~~~~~~~~~~-~~~~ll~~l~eLL~Fcv~~H~-~riK~fil~~~ll~rVl~Ll~~~~--K~L 233 (450)
-++...+..+-.-+ ..... .....+. .-..+...+|..|..++..-. ..++.|+ ..++..++.++++.. ..+
T Consensus 549 ~l~~~l~~~l~~~~-~~~~~-~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 549 KTTLVIMERLQQVL-QMESH-IQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHHHHHHHHHHHHH-TTTTS-CCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHH
T ss_pred HHHHHHHHHHHHHH-HHHhc-cCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCc
Confidence 44444333332111 00000 0000111 114566788899988887766 6666665 678899999888775 368
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHHh--hChHHHHHHHHHHhHhhcc
Q psy10039 234 VLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIKL--EDIKVLCSHVVETYGDELE 311 (450)
Q Consensus 234 ~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir~--eNik~Li~hlve~y~~~l~ 311 (450)
+..|++++.+++..-.+-+..|+- .++..++..+.. ....++..+|+-=+-+.++. +.+.+.+..++...-+.|.
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~--~~~~~l~~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 701 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYME--AFKPFLGIGLKN-YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLG 701 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHcC-cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhC
Confidence 889999999987532222334432 244444444433 23445555554333333332 3555555555555555444
No 48
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=87.77 E-value=10 Score=39.32 Aligned_cols=206 Identities=15% Similarity=0.114 Sum_probs=118.4
Q ss_pred HHHhCCCHHHHHHHHhC-----------CChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHh
Q psy10039 48 TLSSLGILPALEVVLSA-----------EDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQM 116 (450)
Q Consensus 48 ~Lv~~GL~~vi~~~L~~-----------~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~l 116 (450)
.+++.|.++.+--.|.. .++.++..|+-+|..|.-.++.. +..+... .-.+..|+++|
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~-k~~i~~~----------~GaIp~LV~LL 252 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-KATLCSM----------KGCMRALVAQL 252 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHC----------HHHHHHHHHGG
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc-HHHHHHc----------CCcHHHHHHHH
Confidence 45678888888777742 23567778888888887666532 3222221 12356677766
Q ss_pred hcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHH
Q psy10039 117 VSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILE 196 (450)
Q Consensus 117 l~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~e 196 (450)
-. .++ .++.+.+.+|+.|-...+ ..-|..+.+ ...++.|+.-|+.... ..+....+-
T Consensus 253 ~s-~~~--~v~~~A~~aL~nLs~~~~------~~~k~~I~~---~GaI~~LV~lLl~s~~-----------~~v~~~A~~ 309 (458)
T 3nmz_A 253 KS-ESE--DLQQVIASVLRNLSWRAD------VNSKKTLRE---VGSVKALMECALEVKK-----------ESTLKSVLS 309 (458)
T ss_dssp GC-SCH--HHHHHHHHHHHHHTSSCC------HHHHHHHHH---TTHHHHHHHHHTTCCS-----------HHHHHHHHH
T ss_pred hC-CCH--HHHHHHHHHHHHHhcCCC------HHHHHHHHH---cCCHHHHHHHHhcCCC-----------HHHHHHHHH
Confidence 54 455 679999999999854211 112232221 3467777766544211 112222222
Q ss_pred HHHHHHhhccchhhhhhh-hhhHHHHHHHhhccCCcc----hhHHHHHHHHHHhcC--ChhHHHHHHHhhCchHHHHHHh
Q psy10039 197 LLSFCVEHHSYHIKNFVL-NKDLLRKVLVLMKSCHTF----LVLSSLRFMRKIIAM--KDDFYNRYIIKGHLFQPVIDTF 269 (450)
Q Consensus 197 LL~Fcv~~H~~riK~fil-~~~ll~rVl~Ll~~~~K~----L~L~AlRf~R~iI~l--~Defy~ryiik~nLf~PIl~~f 269 (450)
.|.-+..+. -..|.-|. ..+.+.-+..|+.....- ++-.|...+|++-.. .++-+...|++.+.+.|++.++
T Consensus 310 aL~nLs~~~-~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 310 ALWNLSAHC-TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHC-HHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHccCC-HHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 232222211 11133344 788999999998866432 666777788876541 3444678899999999999988
Q ss_pred hhcCCCCcchhhHHHHHHHHH
Q psy10039 270 NRNKGRYNLLDSAVLELFEYI 290 (450)
Q Consensus 270 ~~n~~R~NLlnSA~LElfe~I 290 (450)
... .....-.||-=|...-
T Consensus 389 ~~~--~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 389 KSH--SLTIVSNACGTLWNLS 407 (458)
T ss_dssp SCS--CHHHHHHHHHHHHHHH
T ss_pred cCC--ChHHHHHHHHHHHHHH
Confidence 642 2234444444444443
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=86.59 E-value=36 Score=36.17 Aligned_cols=244 Identities=19% Similarity=0.242 Sum_probs=129.0
Q ss_pred HHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhC
Q psy10039 5 DLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFS 84 (450)
Q Consensus 5 eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~d 84 (450)
.+...+.+...+.-=||.++.-+.-++.+...+-+ ..++++.+.-.|.+.|+.++.+|+=.|..|..++
T Consensus 150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-----------~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-----------MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-----------CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-----------chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 34455533444556677777777777776544332 1388999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcC-C-----------CcchhHHHHHHHHHHHhcCCCCCCccCCchhH
Q psy10039 85 PSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSD-T-----------DPELGRAVQLMSILKILIDPDNMLSSINKTEK 152 (450)
Q Consensus 85 p~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d-~-----------d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~ 152 (450)
|...+.++ +.++..|.+++... . +| =+++.+.+.|..+--++. ++
T Consensus 219 ~~~~~~~~-------------~~~~~~L~~ll~~~~~~~~~~~~~~~~~~--w~qi~il~ll~~~~~~~d-------~~- 275 (621)
T 2vgl_A 219 PEEFKTSV-------------SLAVSRLSRIVTSASTDLQDYTYYFVPAP--WLSVKLLRLLQCYPPPED-------PA- 275 (621)
T ss_dssp HHHHTTHH-------------HHHHHHHHHHHHCCSSSCSTTEETTEESH--HHHHHHHHHGGGSSSCSS-------HH-
T ss_pred hHHHHHHH-------------HHHHHHHHHHHhCCCCCccchhhcCCCCc--hHHHHHHHHHHHhCCCCC-------HH-
Confidence 97543322 22344444443321 1 44 458888888887653221 11
Q ss_pred HHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcc
Q psy10039 153 CEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTF 232 (450)
Q Consensus 153 ~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~ 232 (450)
.-..+|+ +++.++.-+.+.+..+.....+...+.+| |-...++.-.+. . =+....+..+..++.+++.-
T Consensus 276 --~~~~l~~-~L~~il~~~~~~~ks~~l~~~n~~~aVl~----ea~~~i~~l~~~--~--~~~~~~~~~L~~~L~~~~~n 344 (621)
T 2vgl_A 276 --VRGRLTE-CLETILNKAQEPPKSKKVQHSNAKNAVLF----EAISLIIHHDSE--P--NLLVRACNQLGQFLQHRETN 344 (621)
T ss_dssp --HHHHHHH-HHHHHHHHHHSCCSCSSHHHHHHHHHHHH----HHHHHHHHHCCC--H--HHHHHHHHHHHHHSSCSCHH
T ss_pred --HHHHHHH-HHHHHHHhhccCcccccccccchHHHHHH----HHHHHHHhcCCc--H--HHHHHHHHHHHHHhcCCCcc
Confidence 1112222 12222211111110000000001123333 322222221111 0 11224555666778888888
Q ss_pred hhHHHHHHHHHHhcCCh--hHHHHHH---H---h--hCc--hHHHHHHhhhcCCCCcchhhHHHHHHHHHHhhC
Q psy10039 233 LVLSSLRFMRKIIAMKD--DFYNRYI---I---K--GHL--FQPVIDTFNRNKGRYNLLDSAVLELFEYIKLED 294 (450)
Q Consensus 233 L~L~AlRf~R~iI~l~D--efy~ryi---i---k--~nL--f~PIl~~f~~n~~R~NLlnSA~LElfe~Ir~eN 294 (450)
++..|++.+..++.... +++.+|. + + .+. =.-.++++..-.+..| +..-+-||.+|+...+
T Consensus 345 iry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N-v~~Iv~eL~~yl~~~d 417 (621)
T 2vgl_A 345 LRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN-AQQIVAEMLSYLETAD 417 (621)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh-HHHHHHHHHHHHHhcC
Confidence 99999999999987763 3333221 1 1 110 0112445555555566 4666677777776543
No 50
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=86.48 E-value=11 Score=37.41 Aligned_cols=232 Identities=14% Similarity=0.102 Sum_probs=134.6
Q ss_pred CCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhC-----------CChhhHHHHHHHHHHHH
Q psy10039 13 ENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSA-----------EDIATKNAAIDILNFII 81 (450)
Q Consensus 13 ~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~-----------~d~~ir~~atdIL~~ii 81 (450)
|...++.+..++..|..++. . +..| +.+++.|.++++--.|.. .+..++..|+-+|..|-
T Consensus 42 ~~~~~~~~~~A~~aL~nls~---d--~e~R----~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa 112 (354)
T 3nmw_A 42 PAPVEHQICPAVCVLMKLSF---D--EEHR----HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 112 (354)
T ss_dssp CCGGGGTHHHHHHHHHHHHT---S--HHHH----HHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHcC---C--HHHH----HHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 34444556667777666543 2 2333 345788988888877752 23568888999998888
Q ss_pred hhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHh
Q psy10039 82 EFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYK 161 (450)
Q Consensus 82 e~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~ 161 (450)
-.+... |..+... .-.+..|+++|-. .++ .++.+...+|+.|-..++ ...|..+.+ .
T Consensus 113 ~~~~~~-k~~i~~~----------~GaIp~LV~LL~s-~~~--~v~~~A~~aL~nLs~~~~------~~~k~~i~~---~ 169 (354)
T 3nmw_A 113 FGDVAN-KATLCSM----------KGCMRALVAQLKS-ESE--DLQQVIASVLRNLSWRAD------VNSKKTLRE---V 169 (354)
T ss_dssp SSCHHH-HHHHHHC----------HHHHHHHHHGGGC-SCH--HHHHHHHHHHHHHHTTCC------HHHHHHHHH---T
T ss_pred cCCHHH-HHHHHHc----------CCcHHHHHHHHCC-CCH--HHHHHHHHHHHHHhccCC------HHHHHHHHH---C
Confidence 666532 3333221 1235667776643 455 679999999999964211 112333332 3
Q ss_pred hhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhh-hhhHHHHHHHhhccCCc----chhHH
Q psy10039 162 YSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVL-NKDLLRKVLVLMKSCHT----FLVLS 236 (450)
Q Consensus 162 ~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil-~~~ll~rVl~Ll~~~~K----~L~L~ 236 (450)
..++.|+.-|..... ..+....+-.|.-+..+.. ..|.-|. ..+.+.-++.|+++... -++-.
T Consensus 170 G~Ip~Lv~lL~~~~~-----------~~~~~~A~~aL~nLs~~~~-~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~ 237 (354)
T 3nmw_A 170 GSVKALMECALEVKK-----------ESTLKSVLSALWNLSAHCT-ENKADICAVDGALAFLVGTLTYRSQTNTLAIIES 237 (354)
T ss_dssp THHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHTTCH-HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHH
T ss_pred CCHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHccCh-hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHH
Confidence 457777766543211 1222233333333333221 1233344 78999999999886543 26666
Q ss_pred HHHHHHHHhcC--ChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHH
Q psy10039 237 SLRFMRKIIAM--KDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYI 290 (450)
Q Consensus 237 AlRf~R~iI~l--~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~I 290 (450)
|...+|++-.. .++-+...+++.+.+.|++.++.. +.......||-=|...-
T Consensus 238 A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 238 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC--CChHHHHHHHHHHHHHh
Confidence 77777776541 334467889999999999998874 22334444554444443
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=84.35 E-value=17 Score=38.19 Aligned_cols=82 Identities=12% Similarity=0.251 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhCC-------CHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHH
Q psy10039 41 AKENFYKTLSSLG-------ILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVII 113 (450)
Q Consensus 41 ~r~~ff~~Lv~~G-------L~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li 113 (450)
-|..-.++|.+-| +.+.+.-+|.++++.||..|+-.+..|...+|..+.. ..++..|.
T Consensus 102 ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~---------------~~~~~~l~ 166 (591)
T 2vgl_B 102 IRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED---------------QGFLDSLR 166 (591)
T ss_dssp HHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc---------------ccHHHHHH
Confidence 3444455555433 2333555677777777777777777777777776532 12345555
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHhcCC
Q psy10039 114 EQMVSDTDPELGRAVQLMSILKILIDP 140 (450)
Q Consensus 114 ~~ll~d~d~~LG~~~Ql~eaLk~LLDp 140 (450)
+ ++.|.|| +++...+.+|-.+...
T Consensus 167 ~-lL~d~d~--~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 167 D-LIADSNP--MVVANAVAALSEISES 190 (591)
T ss_dssp H-TTSCSCH--HHHHHHHHHHHHHTTS
T ss_pred H-HhCCCCh--hHHHHHHHHHHHHHhh
Confidence 4 5578887 8899999999887653
No 52
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=83.65 E-value=42 Score=38.05 Aligned_cols=201 Identities=11% Similarity=0.116 Sum_probs=108.7
Q ss_pred CHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhH------HHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHH
Q psy10039 54 ILPALEVVLSAEDIATKNAAIDILNFIIEFSPSF------IRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRA 127 (450)
Q Consensus 54 L~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~l------vR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~ 127 (450)
+++.+--+|.+++..+|.+|...|..|+.+-+.. ...+ ...++..|++.+-...++ .++
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-------------~~~llp~L~~~l~~~~~~--~~~ 151 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-------------CKKITGRLTSAIAKQEDV--SVQ 151 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-------------HHHHHHHHHHHHSCCSCH--HHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-------------HHHHHHHHHHHHcCCCch--HHH
Confidence 4455566678899999999999999998864432 1111 134566777766432344 778
Q ss_pred HHHHHHHHHhcC--CCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhc
Q psy10039 128 VQLMSILKILID--PDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHH 205 (450)
Q Consensus 128 ~Ql~eaLk~LLD--p~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H 205 (450)
...+++|..++. ++.+. -+++..++.|+.-|-+. . ..+-...+.-|+-++..-
T Consensus 152 ~~al~~l~~~~~~~~~~l~-------------~~~~~ll~~l~~~L~~~----~--------~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLV-------------NFHPSILTCLLPQLTSP----R--------LAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCT-------------TTHHHHHHHHGGGGGCS----S--------HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhHhHHH-------------HHHHHHHHHHHHHHcCC----c--------HHHHHHHHHHHHHHHHhc
Confidence 888888888885 22111 13355666666555321 1 112223344444443322
Q ss_pred cchhhhhhhhhhHHHHHHHhhccC-CcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHH
Q psy10039 206 SYHIKNFVLNKDLLRKVLVLMKSC-HTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVL 284 (450)
Q Consensus 206 ~~riK~fil~~~ll~rVl~Ll~~~-~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~L 284 (450)
+ ..+ -..++..+...+... ..-++-.|+.++-.++..--..+..|+ ..++..++..+. +.+.-+-.+++
T Consensus 207 ~---~~~--~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~---d~~~~vR~~a~ 276 (1230)
T 1u6g_C 207 G---NIV--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCN---VDDDELREYCI 276 (1230)
T ss_dssp ---------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHS---SCCTTTHHHHH
T ss_pred C---HHH--HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhc---CCCHHHHHHHH
Confidence 2 111 234566666544433 334777788888777653222222222 234444555443 34555677888
Q ss_pred HHHHHHHh---hChHHHHHHHHH
Q psy10039 285 ELFEYIKL---EDIKVLCSHVVE 304 (450)
Q Consensus 285 Elfe~Ir~---eNik~Li~hlve 304 (450)
+.++.+-+ +.+++.+..++.
T Consensus 277 ~~l~~l~~~~~~~~~~~l~~li~ 299 (1230)
T 1u6g_C 277 QAFESFVRRCPKEVYPHVSTIIN 299 (1230)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHHhHHHHHH
Confidence 88887653 345554444443
No 53
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=82.09 E-value=43 Score=33.78 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=111.5
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHH
Q psy10039 55 LPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSIL 134 (450)
Q Consensus 55 ~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaL 134 (450)
++.+=..|+++|..++..|+..|..+..+++.. |..+.+.. .+..|+++|- ..++ .++.+...+|
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~-~~~i~~~g-----------~i~~Lv~lL~-s~~~--~~~~~A~~aL 68 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-KQQVYQLG-----------GICKLVDLLR-SPNQ--NVQQAAAGAL 68 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-HHHHHHTT-----------HHHHHHHHTT-SSCH--HHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-HHHHHHcC-----------CHHHHHHHHc-CCCH--HHHHHHHHHH
Confidence 345556788899999999999999988776543 33333322 1556676554 4455 6688899999
Q ss_pred HHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhh
Q psy10039 135 KILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVL 214 (450)
Q Consensus 135 k~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil 214 (450)
+.|.-. +...+..+.+ ...++.|+.-|-... +..+....+-.|.-+..++ ..|..|+
T Consensus 69 ~nLa~~-------~~~~k~~i~~---~G~i~~Lv~lL~~~~-----------~~~~~~~a~~aL~nLa~~~--~~~~~i~ 125 (457)
T 1xm9_A 69 RNLVFR-------STTNKLETRR---QNGIREAVSLLRRTG-----------NAEIQKQLTGLLWNLSSTD--ELKEELI 125 (457)
T ss_dssp HHHHSS-------CHHHHHHHHH---TTCHHHHHHHHTTCC-----------CHHHHHHHHHHHHHHHTSS--STHHHHH
T ss_pred HHHhcC-------CHHHHHHHHH---cCCHHHHHHHHhhCC-----------CHHHHHHHHHHHHHHhcCH--HhHHHHH
Confidence 988742 1112322222 134666665553111 1234444555555555543 3567788
Q ss_pred hhhHHHHHHHhhc--------cC--------CcchhHHHHHHHHHHhcCChhHHHHHHHhh-CchHHHHHHhhh
Q psy10039 215 NKDLLRKVLVLMK--------SC--------HTFLVLSSLRFMRKIIAMKDDFYNRYIIKG-HLFQPVIDTFNR 271 (450)
Q Consensus 215 ~~~ll~rVl~Ll~--------~~--------~K~L~L~AlRf~R~iI~l~Defy~ryiik~-nLf~PIl~~f~~ 271 (450)
+ +.+..++.++. +. ..-+.-.|++.++++-+- + -....|++. +...|++.++..
T Consensus 126 ~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~-~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 126 A-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-D-AGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp H-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-H-HHHHHHTTSTTHHHHHHHHHHH
T ss_pred h-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-H-HHHHHHHHcCCCHHHHHHHHHh
Confidence 8 99999999983 21 112445889999998764 3 366677776 999999998875
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=81.02 E-value=57 Score=34.06 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=47.6
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
.|+-..|+++ +.++|++++.=|--+..++... ..|++.+++ .++++|..+|..|-=.+..+.+.
T Consensus 16 ~~i~~~L~~~--~~~~k~~~~~kli~~~~~G~d~-------------~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~~ 79 (591)
T 2vgl_B 16 FELKAELNNE--KKEKRKEAVKKVIAAMTVGKDV-------------SSLFPDVVN-CMQTDNLELKKLVYLYLMNYAKS 79 (591)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHHHHHTTCCC-------------GGGHHHHHH-TTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHHCCCCh-------------HHHHHHHHH-HhCCCCHHHHHHHHHHHHHHccc
Confidence 4555666655 4567888877666666666532 345566776 68889999998887777777777
Q ss_pred ChhHH
Q psy10039 84 SPSFI 88 (450)
Q Consensus 84 dp~lv 88 (450)
+|.++
T Consensus 80 ~~e~~ 84 (591)
T 2vgl_B 80 QPDMA 84 (591)
T ss_dssp SHHHH
T ss_pred CchHH
Confidence 77663
No 55
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=80.80 E-value=38 Score=36.22 Aligned_cols=158 Identities=11% Similarity=0.057 Sum_probs=105.2
Q ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHH-hhhHHHhccccccCCCCCcccccccch
Q psy10039 109 VNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFY-KYSIHLLMDPLLDNTKKDEVQVDSYHN 187 (450)
Q Consensus 109 l~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY-~~~~~~L~~PL~~~~~~~~~~~~~~~~ 187 (450)
+..|+.+|-...++ .++.+...||.-|-.-.. .....+-..+- ...++.|+.=|... .
T Consensus 310 v~~Ll~LL~~s~~~--~v~E~Aa~AL~nL~ag~~-------~~~~~~~~~v~~~~glp~Lv~LL~s~------------~ 368 (584)
T 3l6x_A 310 VRIYISLLKESKTP--AILEASAGAIQNLCAGRW-------TYGRYIRSALRQEKALSAIADLLTNE------------H 368 (584)
T ss_dssp HHHHHHHHHHCCCH--HHHHHHHHHHHHHHSSCS-------HHHHHHHHHHTSHHHHHHHHHGGGCS------------C
T ss_pred HHHHHHHHccCCCH--HHHHHHHHHHHHHHcCCc-------cccHHHHHHHHHcCcHHHHHHHHcCC------------C
Confidence 45667766554455 678888888888864211 11112222332 23456655444221 2
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCc--------chhHHHHHHHHHHhcCChhHHHHHHHhh
Q psy10039 188 AQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHT--------FLVLSSLRFMRKIIAMKDDFYNRYIIKG 259 (450)
Q Consensus 188 ~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K--------~L~L~AlRf~R~iI~l~Defy~ryiik~ 259 (450)
..+....|-.|+.+..+.. ++..| ..+.+.+++.||.+.++ -.+..|++.+.+++.- +.-..+.|+..
T Consensus 369 ~~v~~~A~~aL~nLs~~~~--~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~I~~~ 444 (584)
T 3l6x_A 369 ERVVKAASGALRNLAVDAR--NKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKKLRET 444 (584)
T ss_dssp HHHHHHHHHHHHHHHTTCS--CHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCChh--HHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHC
Confidence 3466678888888887664 45544 88999999999887642 2577899999999875 55668899999
Q ss_pred CchHHHHHHhhhcCCCCcchhhHHHHHHHHHH
Q psy10039 260 HLFQPVIDTFNRNKGRYNLLDSAVLELFEYIK 291 (450)
Q Consensus 260 nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir 291 (450)
+...+++.++.......+..-.|+.=|.....
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 99999999987543466777777777776554
No 56
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=80.78 E-value=31 Score=32.44 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=93.8
Q ss_pred ChHHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHH
Q psy10039 1 MAEKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFI 80 (450)
Q Consensus 1 ~~~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~i 80 (450)
|....|-..|++++...+.+..++..|+-+|.-. ++.|. ..++.|.++.+=-.|++++..++..|+-.|..|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~----~~~r~----~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nL 79 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK----SEARK----RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNL 79 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC----HHHHH----HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC----cHHHH----HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4567788888888766678888998887666421 22233 346789899999999999999999999999999
Q ss_pred HhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHH
Q psy10039 81 IEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFY 160 (450)
Q Consensus 81 ie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY 160 (450)
.-.++. -|..+.+..- +..|+++|-...++ .++.+.+.+|..|=-.+ .-|..+.
T Consensus 80 a~~~~~-nk~~I~~~Ga-----------I~~Lv~lL~~~~~~--~~~e~a~~aL~nLS~~~--------~~k~~i~---- 133 (233)
T 3tt9_A 80 VFEDND-NKLEVAELNG-----------VPRLLQVLKQTRDL--ETKKQITGLLWNLSSND--------KLKNLMI---- 133 (233)
T ss_dssp HTTCHH-HHHHHHHTTH-----------HHHHHHHHHHCCCH--HHHHHHHHHHHHHHTSG--------GGHHHHH----
T ss_pred HhCCHH-HHHHHHHcCC-----------HHHHHHHHccCCCH--HHHHHHHHHHHHHHcCh--------hhHHHHH----
Confidence 875553 3444444332 55566666544454 67999999999884221 1233343
Q ss_pred hhhHHHhccccc
Q psy10039 161 KYSIHLLMDPLL 172 (450)
Q Consensus 161 ~~~~~~L~~PL~ 172 (450)
+..++.|+.-++
T Consensus 134 ~~~i~~Lv~ll~ 145 (233)
T 3tt9_A 134 TEALLTLTENII 145 (233)
T ss_dssp HHHHHHHCCCCC
T ss_pred hccHHHHHHHHh
Confidence 346777776543
No 57
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=78.17 E-value=11 Score=40.99 Aligned_cols=210 Identities=10% Similarity=0.140 Sum_probs=137.3
Q ss_pred hCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHH
Q psy10039 51 SLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQL 130 (450)
Q Consensus 51 ~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql 130 (450)
+.+-+..+=-.|+.+|..+|..++-+|..++.+.|..+++.++.... =+..|+..|-.+++ -++...
T Consensus 120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~----------gi~~Lv~lL~d~rE---~iRnea 186 (651)
T 3grl_A 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPM----------GVSRLMDLLADSRE---VIRNDG 186 (651)
T ss_dssp STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTT----------HHHHHHGGGGCSSH---HHHHHH
T ss_pred CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcc----------cHHHHHHHHhCchH---HHHHHH
Confidence 45556666666899999999999999999999999999999997532 14556665544433 457766
Q ss_pred HHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhh
Q psy10039 131 MSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIK 210 (450)
Q Consensus 131 ~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK 210 (450)
.-.|-.|--.. ++-...+. |+...++||+=+-.-.. . +....-...+..+..||. +. ---+
T Consensus 187 llLL~~Lt~~n--------~~iQklVA--FEnaFe~Lf~Ii~~Eg~---~-~Ggivv~DCL~ll~nLLr----~N-~sNQ 247 (651)
T 3grl_A 187 VLLLQALTRSN--------GAIQKIVA--FENAFERLLDIITEEGN---S-DGGIVVEDCLILLQNLLK----NN-NSNQ 247 (651)
T ss_dssp HHHHHHHHTTC--------HHHHHHHH--HTTHHHHHHHHHHHHTG---G-GSHHHHHHHHHHHHHHHT----TC-HHHH
T ss_pred HHHHHHHhcCC--------HHHHHHHH--HhccHHHHHHHHHhcCC---C-ccchhHHHHHHHHHHHHh----cC-HHHH
Confidence 66666665331 12222222 23444667665533211 0 000111112333334433 32 2237
Q ss_pred hhhhhhhHHHHHHHhhccCC--------cc-hhHHHHHHHHHHhcCCh-----hHHHHHHHhhCchHHHHHHhhhcCCCC
Q psy10039 211 NFVLNKDLLRKVLVLMKSCH--------TF-LVLSSLRFMRKIIAMKD-----DFYNRYIIKGHLFQPVIDTFNRNKGRY 276 (450)
Q Consensus 211 ~fil~~~ll~rVl~Ll~~~~--------K~-L~L~AlRf~R~iI~l~D-----efy~ryiik~nLf~PIl~~f~~n~~R~ 276 (450)
+|+.+.+.+.+++.|+..++ |. =..+++.++|..+.-.. .-..+.+.++|++.+++.++...+-..
T Consensus 248 ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~ 327 (651)
T 3grl_A 248 NFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPA 327 (651)
T ss_dssp HHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCH
T ss_pred HHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCH
Confidence 78889999999999987653 22 34678999999988633 345678899999999999998877677
Q ss_pred cchhhHHHHHHHHHHh
Q psy10039 277 NLLDSAVLELFEYIKL 292 (450)
Q Consensus 277 NLlnSA~LElfe~Ir~ 292 (450)
-+..+|+.=+=+.||.
T Consensus 328 ~i~~~Al~tla~~irg 343 (651)
T 3grl_A 328 DILTETINTVSEVIRG 343 (651)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7888888877777763
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=78.14 E-value=34 Score=29.83 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=15.5
Q ss_pred HHHHHHhhcCCCcchHhhHHHHHHHHHH
Q psy10039 3 EKDLLHLLMEENTNELRRRDLALFLREY 30 (450)
Q Consensus 3 ~~eLF~~l~~~~~~~~~rrd~v~FL~q~ 30 (450)
...|...|+++ +..-|..++.-|.++
T Consensus 21 ~~~L~~~L~~~--~~~vR~~A~~~L~~~ 46 (211)
T 3ltm_A 21 VEMYIKNLQDD--SYYVRRAAAYALGKI 46 (211)
T ss_dssp HHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHh
Confidence 35566777654 455666666666543
No 59
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=76.33 E-value=58 Score=34.62 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=44.4
Q ss_pred HHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHHhhChHH--
Q psy10039 220 RKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIKLEDIKV-- 297 (450)
Q Consensus 220 ~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir~eNik~-- 297 (450)
..++.|+.....+++-.++..++.+|..+++. . ..++-.|+++|.....+.
T Consensus 444 ~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~-~--------------------------~~~~~~l~~~l~~~~~~~~l 496 (621)
T 2vgl_A 444 DTILNLIRIAGDYVSEEVWYRVIQIVINRDDV-Q--------------------------GYAAKTVFEALQAPACHENL 496 (621)
T ss_dssp HHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSC-H--------------------------HHHHHHHHHHHTSSSCCHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHhCChhH-H--------------------------HHHHHHHHHHHcCccchHHH
Confidence 34445555544555555566666666543331 2 223444556665443333
Q ss_pred --HHHHHHHHhHhhccCccch---hhHHHHHHHH
Q psy10039 298 --LCSHVVETYGDELESIHYV---QTFRSLRLKY 326 (450)
Q Consensus 298 --Li~hlve~y~~~l~~i~yv---~tf~~L~~ry 326 (450)
.+.|++..|++.+....++ +.++.|..++
T Consensus 497 i~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~ 530 (621)
T 2vgl_A 497 VKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKF 530 (621)
T ss_dssp HHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHh
Confidence 3359999999988875554 4455555555
No 60
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=74.02 E-value=11 Score=35.36 Aligned_cols=74 Identities=9% Similarity=0.166 Sum_probs=56.6
Q ss_pred HHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 3 EKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 3 ~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
+.+||..+++++ ..-|..++.||-.++.-++.- +.+ |...+...|++++.-+|.+.++.+|.+|++.|..|..
T Consensus 148 l~~l~~~l~~k~--~~vk~~al~~l~~~~~~~~~~--~~~---l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 148 LKDILEHMKHKT--PQIRMECTQLFNASMKEEKDG--YST---LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHTTCSS--HHHHHHHHHHHHHHHHHCCSC--SHH---HHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--hHHHHHHHHHHHHHHHHcCCc--chh---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467888887763 477899999999999877642 111 1223335678899999999999999999999999876
Q ss_pred h
Q psy10039 83 F 83 (450)
Q Consensus 83 ~ 83 (450)
+
T Consensus 221 ~ 221 (249)
T 2qk1_A 221 I 221 (249)
T ss_dssp H
T ss_pred H
Confidence 5
No 61
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=67.31 E-value=1.1e+02 Score=30.70 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhCh
Q psy10039 52 LGILPALEVVLSAEDIATKNAAIDILNFIIEFSP 85 (450)
Q Consensus 52 ~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp 85 (450)
+.|++++.-.+.+++..+|..|++.|..+..+-|
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~ 119 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHS 119 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCC
Confidence 3477888777788899999999999999988654
No 62
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=62.80 E-value=61 Score=34.63 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=59.4
Q ss_pred hHHHHHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHH
Q psy10039 2 AEKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFII 81 (450)
Q Consensus 2 ~~~eLF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~ii 81 (450)
+...|-..|+++ +.+-+..++..|+-+|.- + ...| ..+++.|.++.+=-.|++++..++..|+-.|..|.
T Consensus 49 ~i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~--~--~~~k----~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 49 ELPEVIAMLGFR--LDAVKSNAAAYLQHLCYR--N--DKVK----TDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS 118 (584)
T ss_dssp CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT--C--HHHH----HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHCCC--CHHHHHHHHHHHHHHHcC--C--hHHH----HHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 355677777765 467788888888776631 1 1223 34567899999999999999999999999999998
Q ss_pred hhChhHHHHHHHHh
Q psy10039 82 EFSPSFIRDYTLQQ 95 (450)
Q Consensus 82 e~dp~lvR~~~~~q 95 (450)
-++-.--|..+.+.
T Consensus 119 ~~~~~~nk~~I~~~ 132 (584)
T 3l6x_A 119 FGRDQDNKIAIKNC 132 (584)
T ss_dssp SSSCHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHc
Confidence 76322345555544
No 63
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=60.16 E-value=85 Score=28.55 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=72.0
Q ss_pred hHHHHHHhhcCCCcchHhhHHHHHHHH---------HHHHhhhcCCchhHHHHHHHHHhCC--------CHHHHH-HHHh
Q psy10039 2 AEKDLLHLLMEENTNELRRRDLALFLR---------EYCQFSQNLQPQAKENFYKTLSSLG--------ILPALE-VVLS 63 (450)
Q Consensus 2 ~~~eLF~~l~~~~~~~~~rrd~v~FL~---------q~c~laK~LQ~~~r~~ff~~Lv~~G--------L~~vi~-~~L~ 63 (450)
+...|...|++++ ..-|..++.-|. .+..+-++=.+..|..--..|.+.| +++.+. .+++
T Consensus 24 ~i~~L~~~L~~~~--~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 24 NDDELFRLLDDHN--SLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN 101 (280)
T ss_dssp CHHHHHHHTTCSS--HHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCC--HHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Confidence 3467788887754 344555544332 2333334445566777777777766 233444 4678
Q ss_pred CCChhhHHHHHHHHHHHHhhCh----hH--------------HHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchh
Q psy10039 64 AEDIATKNAAIDILNFIIEFSP----SF--------------IRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELG 125 (450)
Q Consensus 64 ~~d~~ir~~atdIL~~iie~dp----~l--------------vR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG 125 (450)
+++..+|..++..|..+-..+| .. ||......-. .-. +...+..|++. +.|.++ .
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~---~~~-~~~~~~~L~~~-l~d~~~--~ 174 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAIS---VIN-DKATIPLLINL-LKDPNG--D 174 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHH---TC----CCHHHHHHH-HTCSSH--H
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHH---hcC-CHHHHHHHHHH-HcCCCH--H
Confidence 8899999999888888764332 22 2222221111 111 22356667764 466666 5
Q ss_pred HHHHHHHHHHHh
Q psy10039 126 RAVQLMSILKIL 137 (450)
Q Consensus 126 ~~~Ql~eaLk~L 137 (450)
++.....+|..+
T Consensus 175 vr~~a~~aL~~~ 186 (280)
T 1oyz_A 175 VRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 677777777665
No 64
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=59.59 E-value=85 Score=26.97 Aligned_cols=128 Identities=17% Similarity=0.098 Sum_probs=70.8
Q ss_pred HHHHHhhcCCCcchHhhHHHHHHHHHHH---------HhhhcCCchhHHHHHHHHHhCC---CHHHHHHHHhCCChhhHH
Q psy10039 4 KDLLHLLMEENTNELRRRDLALFLREYC---------QFSQNLQPQAKENFYKTLSSLG---ILPALEVVLSAEDIATKN 71 (450)
Q Consensus 4 ~eLF~~l~~~~~~~~~rrd~v~FL~q~c---------~laK~LQ~~~r~~ff~~Lv~~G---L~~vi~~~L~~~d~~ir~ 71 (450)
..+...|++++ ..-|..++.-|.++. .+-++=.+..|..-...|...| .++.+.-+|.++++.+|.
T Consensus 17 ~~~i~~L~~~~--~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~ 94 (201)
T 3ltj_A 17 EMYIKNLQDDS--YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQ 94 (201)
T ss_dssp HHHHHHTTCSC--HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHhcCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHH
Confidence 34556666554 344555555544332 2223334555666666666543 677788888888888888
Q ss_pred HHHHHHHHHHh------------hChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcC
Q psy10039 72 AAIDILNFIIE------------FSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILID 139 (450)
Q Consensus 72 ~atdIL~~iie------------~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLD 139 (450)
.|+..|..+-+ ..-..||.....--. .- .+...+..|++.+ .|.++ .++....++|..+=+
T Consensus 95 ~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~---~~-~~~~~~~~L~~~l-~d~~~--~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 95 SAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALG---EI-GDERAVEPLIKAL-KDEDG--WVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH---HH-TCGGGHHHHHHHT-TCSSH--HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHH---Hh-CCHHHHHHHHHHH-cCCCH--HHHHHHHHHHHHhCc
Confidence 77766655422 111123333222211 00 1234456666544 56665 678888888888755
Q ss_pred C
Q psy10039 140 P 140 (450)
Q Consensus 140 p 140 (450)
+
T Consensus 168 ~ 168 (201)
T 3ltj_A 168 E 168 (201)
T ss_dssp H
T ss_pred h
Confidence 4
No 65
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=59.02 E-value=79 Score=30.41 Aligned_cols=172 Identities=10% Similarity=0.098 Sum_probs=103.7
Q ss_pred chHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHH-HHHHH
Q psy10039 16 NELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIR-DYTLQ 94 (450)
Q Consensus 16 ~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR-~~~~~ 94 (450)
+-..+..|+..|++.+.- ....++.++ + .||+-+.+-+.+.+.++-..|.|+|..+++. +.+ +|-+.
T Consensus 59 d~k~~~~ale~L~~~l~~-------~~~~~~~~l-D-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~---l~~~~y~~~ 126 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADT-------SPRSLLSNS-D-LLLKWCTLRFFETNPAALIKVLELCKVIVEL---IRDTETPMS 126 (266)
T ss_dssp CHHHHHHHHHHHHHHHHH-------CHHHHHHTH-H-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH---HHHTTCCCC
T ss_pred CHHHHHHHHHHHHHHhhh-------ChHHHHHHH-H-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH---HHhccccch
Confidence 446677788888876432 123333332 1 1455555556677888889999999988764 111 11111
Q ss_pred hhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccC
Q psy10039 95 QAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDN 174 (450)
Q Consensus 95 q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~ 174 (450)
+.+ -..++-.|++-|-..++ -++.++-++|+.|..-- ++ .+..+.|..++...
T Consensus 127 ~~e-------a~~~lP~LveKlGd~k~---~vR~~~r~il~~l~~v~-------~~----------~~v~~~l~~g~ksK 179 (266)
T 2of3_A 127 QEE-------VSAFVPYLLLKTGEAKD---NMRTSVRDIVNVLSDVV-------GP----------LKMTPMLLDALKSK 179 (266)
T ss_dssp HHH-------HHHHHHHHHHGGGCSSH---HHHHHHHHHHHHHHHHH-------CH----------HHHHHHHHHGGGCS
T ss_pred HHH-------HHHHHHHHHHHhCCChH---HHHHHHHHHHHHHHHHC-------CH----------HHHHHHHHHHHccC
Confidence 111 25667778877744333 56888888887775310 01 11233333333221
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHH---HHHHHhhccCCcchhHHHHHHHHHH
Q psy10039 175 TKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLL---RKVLVLMKSCHTFLVLSSLRFMRKI 244 (450)
Q Consensus 175 ~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll---~rVl~Ll~~~~K~L~L~AlRf~R~i 244 (450)
..++.. -.|+.+..+++.|..-. ...+ .-|+.++..++.-+|=+|+.++-.|
T Consensus 180 --------N~R~R~----e~l~~l~~li~~~G~~~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 180 --------NARQRS----ECLLVIEYYITNAGISP------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp --------CHHHHH----HHHHHHHHHHHHHCSGG------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred --------CHHHHH----HHHHHHHHHHHhcCCCc------cccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 112333 46778888888887642 2345 8899999999999999999998765
No 66
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=57.21 E-value=1.2e+02 Score=28.01 Aligned_cols=191 Identities=9% Similarity=0.131 Sum_probs=113.4
Q ss_pred HHHhhcCCCcchHhhHHHHHHHHH-HHHhhhcCCc--hhHHHHHHHHHhCCCHHHHHHHH-hCCChhhHHHHHHHHHHHH
Q psy10039 6 LLHLLMEENTNELRRRDLALFLRE-YCQFSQNLQP--QAKENFYKTLSSLGILPALEVVL-SAEDIATKNAAIDILNFII 81 (450)
Q Consensus 6 LF~~l~~~~~~~~~rrd~v~FL~q-~c~laK~LQ~--~~r~~ff~~Lv~~GL~~vi~~~L-~~~d~~ir~~atdIL~~ii 81 (450)
+...+. +..-..|++++.=|.. ++.=...+.+ ..-.. ++.++.-++ ++.+..+|..|+..|..|.
T Consensus 21 f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~---------~~~~L~~~l~~D~n~~v~~~A~~al~~la 89 (249)
T 2qk1_A 21 FQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN---------LLGIYGHIIQKDANIQAVALAAQSVELIC 89 (249)
T ss_dssp HHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHH---------HHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 344443 3355677788777766 6632223331 11122 345566678 7889999999999999987
Q ss_pred hhCh-hHHH-HHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHH
Q psy10039 82 EFSP-SFIR-DYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYF 159 (450)
Q Consensus 82 e~dp-~lvR-~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~F 159 (450)
+.=. .-+. .| ...++..|++.+ .|+.+ -++..+..+|..++..-+... . .+ .
T Consensus 90 ~~l~~~~f~~~y-------------~~~llp~ll~~l-~dkk~--~V~~aa~~al~~i~~~~~~~~-~-~~--------~ 143 (249)
T 2qk1_A 90 DKLKTPGFSKDY-------------VSLVFTPLLDRT-KEKKP--SVIEAIRKALLTICKYYDPLA-S-SG--------R 143 (249)
T ss_dssp HHHCTTTSCHHH-------------HHHHHHHHHHGG-GCCCH--HHHHHHHHHHHHHHHHSCTTC-T-TC--------T
T ss_pred HhcccccccHHH-------------HHHHHHHHHHHH-cCCCH--HHHHHHHHHHHHHHHHccccc-c-CC--------c
Confidence 4311 1111 22 134566667655 66666 567888888888875311010 0 00 0
Q ss_pred HhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhh--hhhhhHHHHHHHhhccCCcchhHHH
Q psy10039 160 YKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNF--VLNKDLLRKVLVLMKSCHTFLVLSS 237 (450)
Q Consensus 160 Y~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~f--il~~~ll~rVl~Ll~~~~K~L~L~A 237 (450)
-+.+++.|+.-| ... ...+-.-.+..|+.|+.+.+-....| .+...++..+..+|.-.++-+|=+|
T Consensus 144 l~~ll~~l~~~l-~~k-----------~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA 211 (249)
T 2qk1_A 144 NEDMLKDILEHM-KHK-----------TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIG 211 (249)
T ss_dssp THHHHHHHHHHT-TCS-----------SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHH-cCC-----------ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 123455555333 211 13345567788888888776421222 1236788899999998888999999
Q ss_pred HHHHHHHh
Q psy10039 238 LRFMRKII 245 (450)
Q Consensus 238 lRf~R~iI 245 (450)
..++=++.
T Consensus 212 ~~~l~~i~ 219 (249)
T 2qk1_A 212 FESFAILI 219 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988864
No 67
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=56.80 E-value=1.6e+02 Score=29.39 Aligned_cols=173 Identities=14% Similarity=0.278 Sum_probs=93.0
Q ss_pred HHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-CCCCccCCchhHHHH
Q psy10039 77 LNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDP-DNMLSSINKTEKCEF 155 (450)
Q Consensus 77 L~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp-~~m~~~~~~~e~~~f 155 (450)
|-.++.-|+..+.+|+.++. +..|++.. .+.+. -.+..+.-||+.|++= .+|.+- .....|
T Consensus 142 Lk~~~q~D~~Fa~EFI~~~G------------L~~Li~vi-~~~~g--N~q~Y~L~AL~~LM~~v~Gm~gv---vs~~~f 203 (339)
T 3dad_A 142 LKQIFQEDKDLVPEFVHSEG------------LSCLIRVG-AAADH--NYQSYILRALGQLMLFVDGMLGV---VAHSDT 203 (339)
T ss_dssp HHHHHHTCTTHHHHHHHTTH------------HHHHHHHH-TTSCH--HHHHHHHHHHHHHTTSHHHHHHH---HHCHHH
T ss_pred HHHHhhcchHHHHHHHHhcc------------HHHHHHHH-HhcCh--HHHHHHHHHHHHHHhccccccch---hCCHHH
Confidence 44445568888888887765 45555544 33443 3377788889988874 334321 123456
Q ss_pred HHHHHhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhh-----------HHHHHHH
Q psy10039 156 LNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKD-----------LLRKVLV 224 (450)
Q Consensus 156 l~~FY~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~-----------ll~rVl~ 224 (450)
+++.|.-+. . ..+.+..-.++||.-||..-.... .++... .+..++.
T Consensus 204 I~~lyslv~---------s-----------~~~~V~k~AL~LL~v~V~~se~~~--~lv~~av~~v~~~~~~~p~~~Lv~ 261 (339)
T 3dad_A 204 IQWLYTLCA---------S-----------LSRLVVKTALKLLLVFVEYSENNA--PLFIRAVNSVASTTGAPPWANLVS 261 (339)
T ss_dssp HHHHHHGGG---------C-----------SCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHCCCTTHHHHH
T ss_pred HHHHHHHHc---------C-----------ccHHHHHHHHHHHHHHHccCcccc--hHHHHHHHHhhhccCCCcHHHHHH
Confidence 666665431 0 123344455566644443321111 122111 2446666
Q ss_pred hhc---cCCcchhHHHHHHHHHHhcC-C--hhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHHhhChHHH
Q psy10039 225 LMK---SCHTFLVLSSLRFMRKIIAM-K--DDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIKLEDIKVL 298 (450)
Q Consensus 225 Ll~---~~~K~L~L~AlRf~R~iI~l-~--Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir~eNik~L 298 (450)
+|. +.+.-+.+-|+-.+=+++.- . |.|| ++.+.+...|+..+
T Consensus 262 ~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~--------------------------------di~d~Le~~gi~~~ 309 (339)
T 3dad_A 262 ILEEKNGADPELLVYTVTLINKTLAALPDQDSFY--------------------------------DVTDALEQQGMEAL 309 (339)
T ss_dssp HHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHH--------------------------------HHHHHHHHTTHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHH--------------------------------HHHHHHHHccHHHH
Confidence 776 55566777777665544332 1 2233 66677778888887
Q ss_pred HHHHHHHhHhhccCccchhhHHH
Q psy10039 299 CSHVVETYGDELESIHYVQTFRS 321 (450)
Q Consensus 299 i~hlve~y~~~l~~i~yv~tf~~ 321 (450)
+...+++.+...+-...+..++.
T Consensus 310 i~r~l~~~~~~~~l~~Ql~iyE~ 332 (339)
T 3dad_A 310 VQRHLGTAGTDVDLRTQLVLYEN 332 (339)
T ss_dssp HHHHHSCTTSCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHH
Confidence 77777776544333333333443
No 68
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=49.32 E-value=1.1e+02 Score=28.24 Aligned_cols=184 Identities=13% Similarity=0.127 Sum_probs=103.2
Q ss_pred HhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh-ChhH-HHHHHHHh
Q psy10039 18 LRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF-SPSF-IRDYTLQQ 95 (450)
Q Consensus 18 ~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~-dp~l-vR~~~~~q 95 (450)
..|.+|+.=|.+.+.-.+...+. ...+..+ ..+...+.-++++.+..+...|.++|..+++. .+.. .+......
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~--~~~~~~~--~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~ 99 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISR--DDNIQIY--WRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITL 99 (278)
T ss_dssp HHHHHHHHHHHHHHHTC------------CCT--TSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccccc--hhHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHH
Confidence 45888888888777654433221 1111111 23566788888999999999999999999985 3322 23222222
Q ss_pred hhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCC
Q psy10039 96 AACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNT 175 (450)
Q Consensus 96 ~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~ 175 (450)
. ..++..|++-.+.+..+ +++....+++-.+.....-. .. +++.+...+ ..
T Consensus 100 ~---------~~~l~~lveK~l~~~k~--~~~~~a~~~l~~~~~~~~~~--------~~--------~~e~l~~~l-~~- 150 (278)
T 4ffb_C 100 I---------STWTPLLVEKGLTSSRA--TTKTQSMSCILSLCGLDTSI--------TQ--------SVELVIPFF-EK- 150 (278)
T ss_dssp H---------HHHHHHHHHHTSSCCCH--HHHHHHHHHHHHHHHTSSSS--------HH--------HHHHHGGGG-GC-
T ss_pred H---------HHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHhcCcH--------HH--------HHHHHHHHH-hc-
Confidence 1 24455566555566655 66777777776665432100 11 122332222 11
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHhhccchhhhh-hhhhhHHHHHHHhhccCCcchhHHHHHHHHHH
Q psy10039 176 KKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNF-VLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKI 244 (450)
Q Consensus 176 ~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~f-il~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~i 244 (450)
-.+.+-.-.+..|+-|++.+....-.- -.-..++.-+..++..+++-+|=+|+.++-.+
T Consensus 151 ----------Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 151 ----------KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp ----------SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ----------cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 113344556777777887766543110 11134555567788999999999999997654
No 69
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=48.47 E-value=69 Score=31.82 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=46.8
Q ss_pred cCCCcchHhhHHHHHHHHHHHHhhhc--CCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 11 MEENTNELRRRDLALFLREYCQFSQN--LQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 11 ~~~~~~~~~rrd~v~FL~q~c~laK~--LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
+|-+.-+|-|..--.||+.++.-+=. +..+ .+-|+. +++.|-||++|++..|-..|.+|+..+++.
T Consensus 130 ~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp--~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~n 197 (321)
T 1w9c_A 130 KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIP--PTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQN 197 (321)
T ss_dssp STTTCSHHHHHHHHHHHHHHHHHCTTHHHHSC--HHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 34456778899999999998864211 1111 112333 356788999999999999999999988875
No 70
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=47.14 E-value=2.3e+02 Score=28.20 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHH
Q psy10039 52 LGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLM 131 (450)
Q Consensus 52 ~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~ 131 (450)
..+++.+.-.+++++..+|..|+..|..+.+.-+.- .. ...++..+. .++.|.++ .++....
T Consensus 202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-------~~--------~~~~~~~l~-~~~~d~~~--~vR~~a~ 263 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-------DL--------EALVMPTLR-QAAEDKSW--RVRYMVA 263 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-------HH--------HHHTHHHHH-HHHTCSSH--HHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-------HH--------HHHHHHHHH-HHccCCCH--HHHHHHH
Confidence 356677777777777778888887777777653321 00 012233333 33455554 6788888
Q ss_pred HHHHHhcC
Q psy10039 132 SILKILID 139 (450)
Q Consensus 132 eaLk~LLD 139 (450)
++|-.+..
T Consensus 264 ~~l~~l~~ 271 (588)
T 1b3u_A 264 DKFTELQK 271 (588)
T ss_dssp HTHHHHHH
T ss_pred HHHHHHHH
Confidence 88777753
No 71
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=47.06 E-value=71 Score=29.87 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=64.7
Q ss_pred hhhhhhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHH
Q psy10039 208 HIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELF 287 (450)
Q Consensus 208 riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElf 287 (450)
..|.-|...+.+..++.||++.+.-++-.|+..+|++-.- ++-.-..|++.+-..|++.++...++ ..+...|+-=|+
T Consensus 43 ~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~nk~~I~~~GaI~~Lv~lL~~~~~-~~~~e~a~~aL~ 120 (233)
T 3tt9_A 43 EARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DNDNKLEVAELNGVPRLLQVLKQTRD-LETKKQITGLLW 120 (233)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCCHHHHHHHHccCCC-HHHHHHHHHHHH
Confidence 3466788999999999999999888999999999999764 44567789999999999999986443 334444544444
Q ss_pred HHHHhhChHH
Q psy10039 288 EYIKLEDIKV 297 (450)
Q Consensus 288 e~Ir~eNik~ 297 (450)
..=..+..|.
T Consensus 121 nLS~~~~~k~ 130 (233)
T 3tt9_A 121 NLSSNDKLKN 130 (233)
T ss_dssp HHHTSGGGHH
T ss_pred HHHcChhhHH
Confidence 4333333343
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=46.50 E-value=28 Score=34.98 Aligned_cols=66 Identities=8% Similarity=0.070 Sum_probs=43.9
Q ss_pred CCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHHHHHHHHhhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHH
Q psy10039 53 GILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMS 132 (450)
Q Consensus 53 GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lvR~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~e 132 (450)
.+.+-+.-+|.+.++.||.+|+=-...++..+|.+++.++.+. .-+++|++| ++....+-
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l------------------~~ll~d~n~--~V~~~Al~ 198 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEA------------------QEAASSDNI--MVQYHALG 198 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHH------------------HHHTTCSSH--HHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH------------------HHHhcCCCc--cHHHHHHH
Confidence 3455566677788888988888777888888888887654332 224567776 66655555
Q ss_pred HHHHhc
Q psy10039 133 ILKILI 138 (450)
Q Consensus 133 aLk~LL 138 (450)
+|..+-
T Consensus 199 lL~ei~ 204 (355)
T 3tjz_B 199 LLYHVR 204 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 73
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.53 E-value=1.5e+02 Score=25.23 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=36.6
Q ss_pred HHHHhhhcCCchhHHHHHHHHHhC---CCHHHHHHHHhCCChhhHHHHHHHHHHH
Q psy10039 29 EYCQFSQNLQPQAKENFYKTLSSL---GILPALEVVLSAEDIATKNAAIDILNFI 80 (450)
Q Consensus 29 q~c~laK~LQ~~~r~~ff~~Lv~~---GL~~vi~~~L~~~d~~ir~~atdIL~~i 80 (450)
++...-++=.+..|..-...|... +.++.+--+|+++|..+|..++..|..+
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 344444555667777777777653 4578888888889999998887777654
No 74
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=43.48 E-value=89 Score=30.35 Aligned_cols=79 Identities=13% Similarity=0.259 Sum_probs=57.9
Q ss_pred HHHHHHHHHHH--HHhhccchhhhhhhhhhHHHHHHHhhc--cCCc---chhHHHHHHHHHHhcCChhHHHHHHHhhCch
Q psy10039 190 LLGVILELLSF--CVEHHSYHIKNFVLNKDLLRKVLVLMK--SCHT---FLVLSSLRFMRKIIAMKDDFYNRYIIKGHLF 262 (450)
Q Consensus 190 ll~~l~eLL~F--cv~~H~~riK~fil~~~ll~rVl~Ll~--~~~K---~L~L~AlRf~R~iI~l~Defy~ryiik~nLf 262 (450)
.-..+|--|.- ||-.|+-- |..+++-++.--+--.++ ++.+ ||||+++-.+-++|...|.-...|++..++.
T Consensus 69 ~SnRVcnaLaLlQcvAshpet-r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEii 147 (268)
T 2fv2_A 69 QSNRVCNALALLQCVASHPET-RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEII 147 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTT-HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHH
T ss_pred HHhHHHHHHHHHHHHHcCcch-hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHH
Confidence 34566776644 88889864 445667777766555554 3333 7999999999999999999999999999976
Q ss_pred HHHHHHh
Q psy10039 263 QPVIDTF 269 (450)
Q Consensus 263 ~PIl~~f 269 (450)
-..+.++
T Consensus 148 plCLrim 154 (268)
T 2fv2_A 148 PLCLRIM 154 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.18 E-value=1.6e+02 Score=25.34 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=30.7
Q ss_pred cCCchhHHHHHHHHHhC---CCHHHHHHHHhCCChhhHHHHHHHHHHH
Q psy10039 36 NLQPQAKENFYKTLSSL---GILPALEVVLSAEDIATKNAAIDILNFI 80 (450)
Q Consensus 36 ~LQ~~~r~~ff~~Lv~~---GL~~vi~~~L~~~d~~ir~~atdIL~~i 80 (450)
+=.+..|..-...|... +.++.+.-+|+++|..+|..++..|..+
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 77 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQI 77 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 43456666666666643 4577777788888888888777666554
No 76
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=43.15 E-value=91 Score=25.26 Aligned_cols=24 Identities=4% Similarity=-0.133 Sum_probs=13.8
Q ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHH
Q psy10039 109 VNVIIEQMVSDTDPELGRAVQLMSILK 135 (450)
Q Consensus 109 l~~Li~~ll~d~d~~LG~~~Ql~eaLk 135 (450)
+..|++.| .|.|+ .++.....+|.
T Consensus 106 ~~~L~~~l-~d~~~--~vr~~A~~aL~ 129 (131)
T 1te4_A 106 RAAMEKLA-ETGTG--FARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHT-TSCCT--HHHHHHHHHGG
T ss_pred HHHHHHHH-hCCCH--HHHHHHHHHHH
Confidence 44555544 56665 55766666654
No 77
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=39.60 E-value=4.1e+02 Score=28.99 Aligned_cols=149 Identities=9% Similarity=-0.038 Sum_probs=80.2
Q ss_pred cchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHH---HHhCCCh---hhHHHHHHHHHHHHhhChhHH
Q psy10039 15 TNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEV---VLSAEDI---ATKNAAIDILNFIIEFSPSFI 88 (450)
Q Consensus 15 ~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~---~L~~~d~---~ir~~atdIL~~iie~dp~lv 88 (450)
.+++-|..++..|.+++.... +..+..++..++. +++.+... +++.+|. ......++++..+.+..+.++
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~---~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~ 331 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPD---CHNYPKTAFVLIK-MFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLL 331 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSG---GGGCHHHHHHHHH-HHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCcc---ccccHHHHHHHHH-HHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999887532 2445666666663 44444443 3455563 777778999999999888876
Q ss_pred HHHHHHhhhhcccCCCcccHHHHHHHHhhc----CCCcchhHHHHHHHHHHHhcC-CCCCCccCCchhHHHHHHHHHhhh
Q psy10039 89 RDYTLQQAACISREEQDPMLVNVIIEQMVS----DTDPELGRAVQLMSILKILID-PDNMLSSINKTEKCEFLNYFYKYS 163 (450)
Q Consensus 89 R~~~~~q~~~~s~~e~~~~Ll~~Li~~ll~----d~d~~LG~~~Ql~eaLk~LLD-p~~m~~~~~~~e~~~fl~~FY~~~ 163 (450)
.+.+.+.... ....-..++..|...+-. ..++ .+..+..+.+-.|.+ -.++............+.-+|.+.
T Consensus 332 ~~~~~~~~~~--~~~~l~~~l~~ll~~~~~~~~~~~~~--~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 407 (971)
T 2x1g_F 332 LSGITSADPE--LSILVHRIVQEILHCTDKPGIYPVEE--SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHL 407 (971)
T ss_dssp HHHHHTCCHH--HHHHHHHHHHHHHHHHHCSSCTTTTC--TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH
T ss_pred HHHhccCccc--ccHHHHHHHHHHHHHHcCCCCCCcch--hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 5322210000 000011334444443312 2344 557777777766654 111110001112334556677777
Q ss_pred HHHhcccc
Q psy10039 164 IHLLMDPL 171 (450)
Q Consensus 164 ~~~L~~PL 171 (450)
++.++..+
T Consensus 408 l~~l~~~~ 415 (971)
T 2x1g_F 408 TRILVRKS 415 (971)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77777766
No 78
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.15 E-value=2.6e+02 Score=25.15 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=34.2
Q ss_pred hcCCchhHHHHHHHHHhCC---CHHHHHHHHhCCChhhHHHHHHHHHHH
Q psy10039 35 QNLQPQAKENFYKTLSSLG---ILPALEVVLSAEDIATKNAAIDILNFI 80 (450)
Q Consensus 35 K~LQ~~~r~~ff~~Lv~~G---L~~vi~~~L~~~d~~ir~~atdIL~~i 80 (450)
++=.+..|..-.+.|.+.| .++.+.-.|++++..+|..|+..|..+
T Consensus 33 ~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l 81 (280)
T 1oyz_A 33 DDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQI 81 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3334566777777777654 677777889999999999998887654
No 79
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=32.41 E-value=1.3e+02 Score=32.12 Aligned_cols=64 Identities=5% Similarity=0.107 Sum_probs=51.3
Q ss_pred hhhhhhhhhhHHHHHH-HhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhh
Q psy10039 208 HIKNFVLNKDLLRKVL-VLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 271 (450)
Q Consensus 208 riK~fil~~~ll~rVl-~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~ 271 (450)
..+.-++.++++..++ .|+...+.-++..|.-.||++..-...=...||++.|++.|+..++..
T Consensus 66 ~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~ 130 (684)
T 4gmo_A 66 KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKA 130 (684)
T ss_dssp HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHh
Confidence 3455688889988865 578888888999999999998654334456899999999999999864
No 80
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=31.11 E-value=1.1e+02 Score=30.78 Aligned_cols=114 Identities=11% Similarity=0.137 Sum_probs=69.4
Q ss_pred chHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhCh-hHHHHHHHH
Q psy10039 16 NELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSP-SFIRDYTLQ 94 (450)
Q Consensus 16 ~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp-~lvR~~~~~ 94 (450)
+.+...+.|+-|+.+++- +..+-..+-..+.+..|..+|....+.+|..+++||..+..+.. .--...+++
T Consensus 133 d~~~q~~~l~CLkalmN~--------~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~ 204 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNN--------KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLE 204 (383)
T ss_dssp CHHHHHHHHHHHHHHTSS--------HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcc--------hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHH
Confidence 345566677777776553 44555566677788999999999999999999999999888752 221111222
Q ss_pred hhhhcccCCCcccHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC
Q psy10039 95 QAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDP 140 (450)
Q Consensus 95 q~~~~s~~e~~~~Ll~~Li~~ll~d~d~~LG~~~Ql~eaLk~LLDp 140 (450)
.........+... +..+++.|-...+ +-.++..+..+..|+..
T Consensus 205 Al~~~~~~~e~~R-F~~lv~~L~~~~~--~e~~~~~m~lIN~li~~ 247 (383)
T 3eg5_B 205 AMTERAEMDEVER-FQPLLDGLKSGTS--IALKVGCLQLINALITP 247 (383)
T ss_dssp HHHHHHHHHTSCT-THHHHHTTSTTSC--HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCc-HHHHHHHHHccCc--HHHHHHHHHHHHHHHcC
Confidence 1110000011222 3445565544333 45577777788888874
No 81
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=30.97 E-value=58 Score=28.27 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=51.3
Q ss_pred HHHhhcCCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCCC--------HHHHHHHHhCCChhhHHHHHHHH
Q psy10039 6 LLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGI--------LPALEVVLSAEDIATKNAAIDIL 77 (450)
Q Consensus 6 LF~~l~~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL--------~~vi~~~L~~~d~~ir~~atdIL 77 (450)
|+.-|++-....---+++.-.|++||.+-|.--...=..++ .++.+.+ =+.+.+++++.-|+|+.++.-.|
T Consensus 22 lyvYL~~~~I~~~~E~~il~~i~ncCe~Ik~~Y~~~fn~l~-d~m~~di~~YnI~nvkn~l~~~l~D~rPSVkLAtisLL 100 (145)
T 2jby_A 22 VYDYLNDVDITECTEMDLLCQLSNCCDFINETYAKNYDTLY-DIMERDILSYNIVNIKNTLTFALRDASPSVKLATLTLL 100 (145)
T ss_dssp HHHHHTTCCCCSCCTTCHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhhhhhhhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 44445555544445677888899999998865443333333 2233332 24678999999999999998888
Q ss_pred HHHHh
Q psy10039 78 NFIIE 82 (450)
Q Consensus 78 ~~iie 82 (450)
..||.
T Consensus 101 SiIIk 105 (145)
T 2jby_A 101 ASVIK 105 (145)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88776
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=30.50 E-value=5.7e+02 Score=27.98 Aligned_cols=58 Identities=16% Similarity=0.254 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhc-----cCCcchhHHHHHHHHHHhcCC
Q psy10039 189 QLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMK-----SCHTFLVLSSLRFMRKIIAMK 248 (450)
Q Consensus 189 ~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~-----~~~K~L~L~AlRf~R~iI~l~ 248 (450)
.+-..+|+.|+-.+..|+-.++.|+ ..++.-++.++. ....-+++-|+.|+++|+..+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~ 323 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP 323 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH
Confidence 3455778888766666654445443 356666666654 223348999999999998743
No 83
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=30.09 E-value=6.7e+02 Score=28.66 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=26.6
Q ss_pred hhhhhhh--HHHHHHHhhccCCcchhHHHHHHHHHHhcCC
Q psy10039 211 NFVLNKD--LLRKVLVLMKSCHTFLVLSSLRFMRKIIAMK 248 (450)
Q Consensus 211 ~fil~~~--ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~ 248 (450)
.++.+.+ ++.-+..++.. --++.+|+.|+-.|++.+
T Consensus 241 ~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 241 SHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCC
T ss_pred HHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCC
Confidence 3555543 77777766653 448899999999999977
No 84
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=27.76 E-value=3.5e+02 Score=30.15 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=46.0
Q ss_pred cCCCcchHhhHHHHHHHHHHHHhhhc-CC--chhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q psy10039 11 MEENTNELRRRDLALFLREYCQFSQN-LQ--PQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEF 83 (450)
Q Consensus 11 ~~~~~~~~~rrd~v~FL~q~c~laK~-LQ--~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~ 83 (450)
++.....+-|++...||+.++.-.-. +. ++ ..|. .+++.+-||+++++..+..+|..++..++..
T Consensus 812 ~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~---~~~~-----~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 812 KDFTEYPEHRVEFYKLLKVINEKSFAAFLELPP---AAFK-----LFVDAICWAFKHNNRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCH---HHHH-----HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred cchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCH---HHHH-----HHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 34455778899999999988853221 10 11 1122 3455677999999999999999999998884
No 85
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=24.86 E-value=1.7e+02 Score=25.61 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhC------CChhhHHHHHHHHHHH
Q psy10039 24 ALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSA------EDIATKNAAIDILNFI 80 (450)
Q Consensus 24 v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~------~d~~ir~~atdIL~~i 80 (450)
+.+|.+.+.+-... .+..+|+++|+|.+|..=|.- +...||....++|..+
T Consensus 38 lklL~~V~~~l~k~------~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l 94 (145)
T 2xpp_A 38 IENVEEISDILMSK------ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM 94 (145)
T ss_dssp HHHHHHHHHHHTCT------TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS
T ss_pred HhhHHHHHHHHhhH------HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC
Confidence 46777777765543 356889999999999998873 3567888777777665
No 86
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=24.73 E-value=6.3e+02 Score=26.54 Aligned_cols=91 Identities=10% Similarity=0.225 Sum_probs=57.3
Q ss_pred cccHHHHHHHHhhcCCCcchh-HHHHHHHHHHHhcCCCCCCccCCchhHHHHHHHHHhhhHHHhccccccCCCCCccccc
Q psy10039 105 DPMLVNVIIEQMVSDTDPELG-RAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVD 183 (450)
Q Consensus 105 ~~~Ll~~Li~~ll~d~d~~LG-~~~Ql~eaLk~LLDp~~m~~~~~~~e~~~fl~~FY~~~~~~L~~PL~~~~~~~~~~~~ 183 (450)
...++.+|.+++.++ +.++| +-.++=.+++.|-. +.+ -+-..+. .+. |++... .
T Consensus 151 ~t~iidiLL~lyFd~-~t~i~~vvn~IE~~~~~Lss--deL------irrril~----nnl-----~lL~~v-------K 205 (500)
T 3vld_A 151 TSNIIDILLDILFDE-KVENDKLITAIEKALERLST--DEL------IRRRLFD----NNL-----PYLVSV-------K 205 (500)
T ss_dssp TSSHHHHHHHHHTCT-TCCCHHHHHHHHHHHHHHTT--SHH------HHHHHHT----TTH-----HHHHHH-------H
T ss_pred cChHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHcCc--hHH------HHHHHHH----HhH-----HHHHHH-------h
Confidence 567888888877764 55578 88888888887721 111 0122222 222 332211 0
Q ss_pred ccchHHHHHHHHHHHHHHHhh---ccchhhhhhhhhhHHH
Q psy10039 184 SYHNAQLLGVILELLSFCVEH---HSYHIKNFVLNKDLLR 220 (450)
Q Consensus 184 ~~~~~~ll~~l~eLL~Fcv~~---H~~riK~fil~~~ll~ 220 (450)
+..++.+++-++||+.-+.++ ..++-+.|++.++=+.
T Consensus 206 ~~~~~i~~sRLLdll~il~~~i~~~eF~~~Lfi~~~~Ei~ 245 (500)
T 3vld_A 206 GRMETVSFVRLIDFLTIEFQFISGPEFKDIIFCFTKEEIL 245 (500)
T ss_dssp HHCCHHHHHHHHHHHHHHHTTCCTTTCCHHHHCCCHHHHH
T ss_pred cCCCceeHHHHHHHHHHHhcccCcccCCcceeeccHHHHH
Confidence 124567889999999887554 6899899999886544
No 87
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=23.34 E-value=69 Score=30.99 Aligned_cols=82 Identities=7% Similarity=0.100 Sum_probs=50.9
Q ss_pred hhhHHHHHHHhhccCCcchhHHHHHHHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCc-chhhHHHHHHHHHHhh
Q psy10039 215 NKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYN-LLDSAVLELFEYIKLE 293 (450)
Q Consensus 215 ~~~ll~rVl~Ll~~~~K~L~L~AlRf~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~N-LlnSA~LElfe~Ir~e 293 (450)
-.+++.++..+++.++-=+.|-|+||+|+++.--+ +..+-|.-+++++.....+.| ++-=-..|.++-++.-
T Consensus 73 ~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp-------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~ 145 (265)
T 3b2a_A 73 LERHLDVFINALSQENEKVTIKALRALGYLVKDVP-------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL 145 (265)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc
Confidence 45678888999988888899999999999976432 223334556677766654444 3333334444444333
Q ss_pred C-hHHHHHHHH
Q psy10039 294 D-IKVLCSHVV 303 (450)
Q Consensus 294 N-ik~Li~hlv 303 (450)
+ ++.++.+|.
T Consensus 146 ~~~~~V~~~l~ 156 (265)
T 3b2a_A 146 EDSKLVRTYIN 156 (265)
T ss_dssp CCCHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 3 455555554
No 88
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=21.97 E-value=2.6e+02 Score=25.21 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhC------CChhhHHHHHHHHHHH
Q psy10039 24 ALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSA------EDIATKNAAIDILNFI 80 (450)
Q Consensus 24 v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~------~d~~ir~~atdIL~~i 80 (450)
+.+|.+.|.+-+ |..+..+|+++|+|.+|..=|.- +...||....++|..+
T Consensus 53 LkmL~~V~~~L~------k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l 109 (170)
T 3nfq_A 53 VKLLPKVVSVLS------KANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL 109 (170)
T ss_dssp HHHHHHHHHHHT------CGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS
T ss_pred HhhHHHHHHHHh------HHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC
Confidence 567777777644 55677899999999999998864 4567888777777755
No 89
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=20.99 E-value=84 Score=24.08 Aligned_cols=47 Identities=11% Similarity=0.287 Sum_probs=32.8
Q ss_pred HhhhcCCchhHHHHHHHHHhCCCHHHHHHHHhCCChhhHHHHHHHHHHHHhhChhHH
Q psy10039 32 QFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFI 88 (450)
Q Consensus 32 ~laK~LQ~~~r~~ff~~Lv~~GL~~vi~~~L~~~d~~ir~~atdIL~~iie~dp~lv 88 (450)
++|..+...+|..+.+.|.+.--. ...+|.--=.||+.|+|++|+++
T Consensus 15 slAae~~~~s~deL~~~l~eqee~----------n~~Le~YID~LL~~ImE~~PsiL 61 (64)
T 2hv8_D 15 SLAAEISSVSRDELMEAIQKQEEI----------NFRLQDYIDRIIVAIMETNPSIL 61 (64)
T ss_dssp HHHTTCCSSCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHTTCGGGG
T ss_pred hHHHHHHcCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHcCCchh
Confidence 466667777777777666532111 14677777789999999999986
No 90
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.94 E-value=4.9e+02 Score=23.86 Aligned_cols=127 Identities=9% Similarity=0.148 Sum_probs=0.0
Q ss_pred HhhhHHHhccccccCCCCCcccccccchHHHHHHHHHHHHHHHhhccchhhhhhhhhhHHHHHHHhhccCCcchhHHHHH
Q psy10039 160 YKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLR 239 (450)
Q Consensus 160 Y~~~~~~L~~PL~~~~~~~~~~~~~~~~~~ll~~l~eLL~Fcv~~H~~riK~fil~~~ll~rVl~Ll~~~~K~L~L~AlR 239 (450)
|+..+.+.+.|.+.. .+-.+...|||++. ..-.--++.++-|.+-+..+.-..++-||.
T Consensus 9 ~~~~i~kAT~~~~~~-----------~dw~~ileicD~I~----------~~~~~~k~a~ral~krl~~~n~~v~l~aL~ 67 (226)
T 3zyq_A 9 FERLLDKATSQLLLE-----------TDWESILQICDLIR----------QGDTQAKYAVNSIKKKVNDKNPHVALYALE 67 (226)
T ss_dssp HHHHHHHHTCTTCSS-----------CCHHHHHHHHHHHH----------TTSSCHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCC-----------cCHHHHHHHHHHHh----------CCCccHHHHHHHHHHHHcCCCHHHHHHHHH
Q ss_pred HHHHHhcCChhHHHHHHHhhCchHHHHHHhhhcCCCCcchhhHHHHHHHHHHhhChHHHHHHHHHHhHhhccCcc----c
Q psy10039 240 FMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIKLEDIKVLCSHVVETYGDELESIH----Y 315 (450)
Q Consensus 240 f~R~iI~l~Defy~ryiik~nLf~PIl~~f~~n~~R~NLlnSA~LElfe~Ir~eNik~Li~hlve~y~~~l~~i~----y 315 (450)
.+=+||.=--.-|++.|.+...++-+..++....+ ..+|.-+.-++....+.|++-. +
T Consensus 68 LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~------------------~~Vk~kil~li~~W~~~f~~~~~l~~i 129 (226)
T 3zyq_A 68 VMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVE------------------VNVRNKILYLIQAWAHAFRNEPKYKVV 129 (226)
T ss_dssp HHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCC------------------HHHHHHHHHHHHHHHHHTTTCGGGHHH
T ss_pred HHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCC------------------HHHHHHHHHHHHHHHHHhCCCcchHHH
Q ss_pred hhhHHHHHHH
Q psy10039 316 VQTFRSLRLK 325 (450)
Q Consensus 316 v~tf~~L~~r 325 (450)
.++.+.|+.+
T Consensus 130 ~~~Y~~Lk~~ 139 (226)
T 3zyq_A 130 QDTYQIMKVE 139 (226)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=20.66 E-value=9.4e+02 Score=27.09 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=44.5
Q ss_pred CCCcchHhhHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhCC------CHHHHHHHHhCCChhhHHHHHHHHHHHHh
Q psy10039 12 EENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLG------ILPALEVVLSAEDIATKNAAIDILNFIIE 82 (450)
Q Consensus 12 ~~~~~~~~rrd~v~FL~q~c~laK~LQ~~~r~~ff~~Lv~~G------L~~vi~~~L~~~d~~ir~~atdIL~~iie 82 (450)
+-..-++-|.+.-+||+.+++-+ |.+|.+.. +++.+-||++|+...+-..|..++..+++
T Consensus 813 ~~~~~Pe~r~~ff~ll~~~~~~~-----------f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~ 878 (1023)
T 4hat_C 813 DFTEYPEHRVEFYKLLKVINEKS-----------FAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVK 878 (1023)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHC-----------THHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHHHC-----------hHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 34456677888888888876653 22222222 67789999999999999999999988886
Done!