RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10039
(450 letters)
>gnl|CDD|147119 pfam04802, SMK-1, Component of IIS longevity pathway SMK-1. SMK-1
is a component of the IIs longevity pathway which
regulates aging in C.elegans. Specifically, SMK-1
influences DAF-16-dependant regulation of the aging
process by regulating the transcriptional specificity of
DAF-16 activity. SMK-1 plays a role in longevity by
modulating the transcriptional specificity of DAF-16.
Length = 193
Score = 57.6 bits (140), Expect = 9e-10
Identities = 22/46 (47%), Positives = 35/46 (76%)
Query: 4 KDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTL 49
++L LL + +T++ RRRDL LFL E+C +++LQPQ++ F+KTL
Sbjct: 148 EELFALLTDSSTSDERRRDLVLFLHEFCNIAKSLQPQSRSTFFKTL 193
>gnl|CDD|237250 PRK12893, PRK12893, allantoate amidohydrolase; Reviewed.
Length = 412
Score = 32.5 bits (75), Expect = 0.45
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 52 LGILPALEVVLSAED--IATKNAAIDILNFIIE----FSPSFI 88
LG+L ALEVV + D I T+ I+++++ E F+P+ +
Sbjct: 98 LGVLAALEVVRTLNDAGIRTR-RPIEVVSWTNEEGARFAPAML 139
>gnl|CDD|220777 pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter
protein p101 subunit. Class I PI3Ks are dual-specific
lipid and protein kinases involved in numerous
intracellular signaling pathways. Class IB PI3K,
p110gamma, is mainly activated by seven-transmembrane
G-protein-coupled receptors (GPCRs), through its
regulatory subunit p101 and G-protein beta-gamma
subunits.
Length = 856
Score = 31.9 bits (72), Expect = 0.81
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 361 SSRAHQEPRQMDEDEEIWFNEEDSFEDA--SADTSPPSVTSSQLGNSAASNVITFESIGK 418
+ + EDEE+ EE+ E S + SS N ++ +
Sbjct: 302 LKESQLLEPVLSEDEEVEEEEEEDDETDGLSPERDSLLSNSSVYSNDSSDSKEDSSMSMS 361
Query: 419 SLSEKK---VSSDSLGALVDYEEDSDEEED 445
+L+ VSS S Y EDSDE D
Sbjct: 362 NLARHSLTFVSSLSDCMDSGYVEDSDEGSD 391
>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional.
Length = 237
Score = 29.9 bits (68), Expect = 2.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 82 EFSPSFIRDYTLQQAACISREEQDP 106
EF+ +R Y +A C+ RE D
Sbjct: 187 EFTAHIMRAYLRARADCLRREGLDA 211
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 30.3 bits (68), Expect = 2.8
Identities = 22/104 (21%), Positives = 38/104 (36%)
Query: 344 LLDSVSLLRNKMTTIHRSSRAHQEPRQMDEDEEIWFNEEDSFEDASADTSPPSVTSSQLG 403
+ + + + ++S Q M ED+ + EDS E+ + + P T
Sbjct: 328 HVSPGTQNQKQYDPSSKTSTNSQSGTSMLEDDLKLSSSEDSDEEQATEKPPSRNTPPSAP 387
Query: 404 NSAASNVITFESIGKSLSEKKVSSDSLGALVDYEEDSDEEEDPQ 447
+S + S S + SS S DS+E E P+
Sbjct: 388 SSNPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPR 431
>gnl|CDD|132886 cd07046, BMC_PduU-EutS, 1,2-propanediol utilization protein U
(PduU)/ethanolamine utilization protein S (EutS),
Bacterial Micro-Compartment (BMC) domain. PduU
encapsulates several related enzymes within a shell
composed of a few thousand protein subunits. PduU
exists as a hexamer which might further assemble into
the flat facets of the polyhedral outer shell of the
pdu organelle. This proteinaceous noncarboxysome
microcompartment is involved in coenzyme B12-dependent
degradation of 1,2-propanediol. The core of PduU is
related to the typical BMC domain and its natural
oligomeric state is a cyclic hexamer. Unlike other
typical BMC domain proteins, the 3D topology of PduU
reveals a circular permuted variation on the typical
BMC fold which leads to several unique features. The
exact functions related to those unique features are
still not clear. Another difference is the presence of
a deep cavity on one side of the hexamer as well as an
intermolecular six-stranded beta barrel that seems to
block the central pore that is present in other BMC
domain proteins. EutS proteins included in this CD are
sequence homologs of PduU. They are encoded within eut
operon and may be required for the formation of the
outer shell of bacterial eut polyhedral organelles
which are involved in the cobalamin-dependent
degradation of ethanolamine. Although it has been
suggested that EutS might also form hexamers and play
similar functional roles in the construction of the eut
organelle outer shell at present no experimental
evidence directly supports this view.
Length = 110
Score = 28.4 bits (64), Expect = 2.9
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 50 SSLGIL---PALEVVLSAEDIATKNAAIDILNFIIEFSPSFI 88
++GIL P+ E + A DIATK A ++I F+ FS + +
Sbjct: 38 EAIGILTITPS-EAAIIAADIATKAADVEI-GFLDRFSGALV 77
>gnl|CDD|221176 pfam11707, Npa1, Ribosome 60S biogenesis N-terminal. Npa1p is
required for ribosome biogenesis and operates in the
same functional environment as Rsa3p and Dbp6p during
early maturation of 60S ribosomal subunits. The protein
partners of Npa1p include eight putative helicases as
well as the novel Npa2p factor. Npa1p can also associate
with a subset of H/ACA and C/D small nucleolar RNPs
(snoRNPs) involved in the chemical modification of
residues in the vicinity of the peptidyl transferase
centre. The protein has also been referred to as Urb1,
and this domain at the N-terminal is one of several
conserved regions along the length.
Length = 327
Score = 29.6 bits (67), Expect = 3.2
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 154 EFLNYFY--KYSIHLLMDPLLDNTKKDEVQVDSY-HNAQLLGVILELLSFCVEHHSYHIK 210
E LN F + L+ P +K + S N LSF +
Sbjct: 94 EVLNSFDFSLKVLPKLLTPRKKELEKRKKSKKSIRRNFIRF-----ALSFLSVGSPELKR 148
Query: 211 NFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRK 243
+ + K+LL +L + VL L ++
Sbjct: 149 DILEQKELLSALLKGLGKDPPETVLYILSTLKD 181
>gnl|CDD|152645 pfam12210, Hrs_helical, Hepatocyte growth factor-regulated tyrosine
kinase substrate. This domain family is found in
eukaryotes, and is approximately 100 amino acids in
length. The family is found in association with
pfam00790, pfam01363, pfam02809. This domain is the
helical region of Hrs which forms the core complex of
ESCRT with STAM.
Length = 96
Score = 27.9 bits (62), Expect = 4.0
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 270 NRNKGRYNLLDSAVLELFEYIKLEDIKVLCSHVVETYGDELESIHYVQTFRSLRLKYNQA 329
N +GR DSAV LF+ I + ++ + R Y
Sbjct: 21 NSMRGRSIANDSAVQSLFQ-----TINAMHPQLLS----------LMNQLDEKRGYYEGL 65
Query: 330 QDKLKDLKD 338
QDKL +KD
Sbjct: 66 QDKLAQIKD 74
>gnl|CDD|192164 pfam08825, E2_bind, E2 binding domain. E1 and E2 enzymes play a
central role in ubiquitin and ubiquitin-like protein
transfer cascades. This is an E2 binding domain that is
found on NEDD8 activating E1 enzyme. The domain
resembles ubiquitin, and recruits the catalytic core of
the E2 enzyme Ubc12 in a similar manner to that in
which ubiquitin interacts with ubiquitin binding
domains.
Length = 85
Score = 27.6 bits (62), Expect = 4.1
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 30 YCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFI 80
Y Q +L+ + N K L LG+ E+V++ D A + L F
Sbjct: 37 YMQSPPSLEEATRPNLSKPLKELGVSDGQEIVVT--DPALPTSLKLRLKFK 85
>gnl|CDD|213362 cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily.
This subfamily belongs to the Thermotoga maritima CorA
(TmCorA)-family of the MIT superfamily of essential
membrane proteins involved in transporting divalent
cations (uptake or efflux) across membranes. Members of
this subfamily are found in all three kingdoms of life.
It is functionally diverse subfamily, in addition to the
CorA Co2+ transporter from the hyperthermophilic
Thermotoga maritima, it includes Methanosarcina mazei
CorA which may be involved in transport of copper and/or
other divalent metal ions. Thermotoga maritima CorA
forms funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport by a related protein, Saccharomyces cerevisiae
Alr1p. Natural variants in this signature sequence may
be associated with the transport of different divalent
cations. The functional diversity of the MIT superfamily
may also be due to minor structural differences
regulating gating, substrate selection, and transport.
Length = 294
Score = 28.9 bits (66), Expect = 4.9
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 33/104 (31%)
Query: 230 HTFLVLSSLRFMRKIIAMKDD-----FYNRYII-----KGHLFQPVIDTFNRNKGR---- 275
+ F+VL L + ++ + Y+I G +F PV + KGR
Sbjct: 48 YLFIVLKMLYYDEDTGELESEQVSLILGKNYVISFQERPGDVFDPVRERLRNGKGRIRKK 107
Query: 276 ------YNLLDSAVLELFEYIKLEDIKVLCSHVVETYGDELESI 313
Y LLD+ V F V+E GD +E +
Sbjct: 108 GADYLAYALLDAIVDNYFP-------------VLEKLGDRIEDL 138
>gnl|CDD|222055 pfam13339, AATF-Che1, Apoptosis antagonizing transcription factor.
The N-terminal and leucine-zipper region of the
apoptosis antagonizing transcription factor-Che1.
Length = 122
Score = 27.3 bits (61), Expect = 8.3
Identities = 10/62 (16%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 327 NQAQDKLKDLKDKSSTNLLDSVSLLRNKMTTIHRSSRAHQEPRQMDEDEEIWFNEEDSFE 386
+ Q+ LK + K+ LL+++ LR + +S + + ++ +++W + +
Sbjct: 48 EEFQEALKSAE-KALLKLLNTLLELREALLDSSGNSESKKGKKRKTSSDDLWEEMQALDK 106
Query: 387 DA 388
Sbjct: 107 RL 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.370
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,753,152
Number of extensions: 2239425
Number of successful extensions: 2023
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2021
Number of HSP's successfully gapped: 32
Length of query: 450
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 350
Effective length of database: 6,502,202
Effective search space: 2275770700
Effective search space used: 2275770700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)