RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10039
(450 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 4e-10
Identities = 67/391 (17%), Positives = 120/391 (30%), Gaps = 117/391 (29%)
Query: 7 LHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEV----VL 62
L ++ N + LR + L+ K Y+ L +L L V
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYEN--CLLVL--LNVQNAKAW 259
Query: 63 SAEDIA------TKNAAI-DILN-------FIIEFSPSFIRDYTLQQ-AACISREEQD-- 105
+A +++ T+ + D L+ + S + D + QD
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 106 -------PMLVNVI-------------------------IEQMVSDTDPELGRAV----- 128
P +++I IE ++ +P R +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 129 ----------QLMSIL---KILIDPDNMLSSINKTEKCEFLNYFYKYSIHLLMDPLLDNT 175
L+S++ I D +++ ++K E SI + L+
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI---YLELK 436
Query: 176 KKDEVQ-------VDSY------HNAQLLGVILELLSFCVEHHSYHIKN----------- 211
K E + VD Y + L+ L+ + H +H+KN
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY--SHIGHHLKNIEHPERMTLFR 494
Query: 212 -------FVLNKDLLRKVLVLMKSCHTFL-VLSSLRFMRKIIAMKDDFYNRYIIKGHLFQ 263
F+ K +R + + L L L+F + I D Y R + F
Sbjct: 495 MVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 264 PVIDTFNRNKGRY-NLLDSAVLELFEYIKLE 293
P I+ N +Y +LL A++ E I E
Sbjct: 553 PKIEE-NLICSKYTDLLRIALMAEDEAIFEE 582
Score = 54.9 bits (131), Expect = 4e-08
Identities = 68/468 (14%), Positives = 147/468 (31%), Gaps = 126/468 (26%)
Query: 1 MAEKDLLHLLMEENTNELRRRDLALFLRE----YCQF-SQNLQPQAKENFYKTLSSLGIL 55
++++++ H++M ++ R L + +F + L+ YK L S
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-----YKFLMS---- 96
Query: 56 PALEVVLSAEDIATK--NAAIDIL-NFIIEFSPSFI-RD---YTLQQAACISREEQDPML 108
++ + T+ D L N F+ + R L+QA R +
Sbjct: 97 -PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK---- 151
Query: 109 VNVIIEQM------------VSDTDPE-----------LGRAVQLMSILKIL------ID 139
NV+I+ + + L ++L++L ID
Sbjct: 152 -NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 140 P------DNMLSSINKTE--KCEFLNYFY--KYSIHLLMDPLLDNTKKDEVQVDSY-HNA 188
P D+ + + + E Y LL +L N + + +++ +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQNAKA-WNAFNLSC 266
Query: 189 QLL------GVILELLSFCVEHHSYHIKNFVLNKD----LLRKVL--------VLMKSCH 230
++L V L + H S + L D LL K L + + +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 231 TFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR-NKGRYNLLDSAVL-ELFE 288
+ S+ I D + + D + N+L+ A ++F+
Sbjct: 327 PRRL--SI-----IAESIRDGLATW---DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 289 YIKL--EDIK----VLCSHVVETYGDELESIHYVQTFRSLRLKYNQAQDKLKDLKDKSST 342
+ + +L ++ + + + V L K K+ + +
Sbjct: 377 RLSVFPPSAHIPTILLS--LIWFDVIKSDVMVVVNKLHKYSLV-------EKQPKESTIS 427
Query: 343 --NLLDSVSLLRNKMTTIHRSSRAH-QEPRQMDEDEEI-------WFN 380
++ + + +HRS H P+ D D+ I +++
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Score = 54.5 bits (130), Expect = 5e-08
Identities = 87/534 (16%), Positives = 160/534 (29%), Gaps = 159/534 (29%)
Query: 8 HLLMEENTNELRRRDLALFLREYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDI 67
H M+ T E +Y +++ ++ F + + +LS E+I
Sbjct: 4 HHHMDFETGEH----------QYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI 51
Query: 68 ------ATKNAAIDILNFIIEFSPS-----FIRDYTLQQ-----AACISREEQDPMLVNV 111
+ L + + F+ + L+ + I E++ P ++
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 112 I-IEQ---MVSDTDPELGRAV-------QLMSILKILIDPDN-----ML----SSI---- 147
+ IEQ + +D V +L L L N +L + +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 148 --NKTEKCEF------LNYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLS 199
+ +C+ LN S +++ L Q L ++
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-----------------QKLLYQIDPNW 213
Query: 200 FCVEHHSYHIK-NFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIK 258
HS +IK + LR++L + LVL + N
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-------------LNVQNAKAWN 260
Query: 259 GHLF----QPVIDTFNRNKGRYNLLDSAVLELFEYIKLEDIKVLCSHVVETYGDELESIH 314
F + ++ T R K + D +I L+ + + DE++S+
Sbjct: 261 A--FNLSCKILLTT--RFK---QVTDFLSAATTTHISLDHHSMTLTP------DEVKSL- 306
Query: 315 YVQTFRSLRLKYNQAQDKLKDLKDKSSTNLLDSVS-LLRN--------------KMTTIH 359
L + L ++ L ++ +R+ K+TTI
Sbjct: 307 -------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 360 RSSRAHQEP---RQM-------DEDEEI--------WFNEEDSFEDASADTSPPSVTSSQ 401
SS EP R+M I WF+ S + S
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK---LHKYSL 416
Query: 402 LGNSAASNVITFESIGKSLSEKKVSSDSL-GALVD-YEE----DSDEEEDPQQD 449
+ + I+ SI L K + +L ++VD Y DSD+ P D
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Score = 28.3 bits (62), Expect = 7.9
Identities = 24/209 (11%), Positives = 57/209 (27%), Gaps = 47/209 (22%)
Query: 1 MAEKDLLHLLMEENTNELRRRDLALFLREYCQFSQNLQPQAK-ENFYKTLSSLGILPALE 59
+ K + L+E+ E +++L + + Y +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT-------- 458
Query: 60 VVLSAEDIATKNAAID--ILNFIIEFSPSFIRDYTLQQAACISREEQDPMLVNVI----- 112
++D+ +D + I + L+ E+ + V
Sbjct: 459 --FDSDDLIPPY--LDQYFYSHI---------GHHLKNI---EHPERMTLFRMVFLDFRF 502
Query: 113 IEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEK------CEFLNYFYKYSIHL 166
+EQ + + SIL L I + L++ K +L
Sbjct: 503 LEQKIRHDSTAWNAS---GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 167 LMDPLLD------NTKKDEVQVDSYHNAQ 189
+ D + + + +++ Q
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 2e-08
Identities = 60/339 (17%), Positives = 111/339 (32%), Gaps = 97/339 (28%)
Query: 126 RAVQLM-SILKILIDPDNMLSSINKTE-KCEFLNYFYKYSIHLLMDPLLDNTKKDEVQVD 183
A QL KIL +P ++ ++ E + F Y L+ + +V
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV----------EPSKVG 78
Query: 184 SYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRK 243
+ Q+L + L F E+ ++ D+ H L L+
Sbjct: 79 QF--DQVLNLCLT--EF--EN------CYLEGNDI-----------HA-LAAKLLQENDT 114
Query: 244 IIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAVLELFEYIKLEDIKVLCSHVV 303
+ + +IK + I R + + +SA LF + + ++ +
Sbjct: 115 TLVKT-----KELIK-NYITARI-MAKRPFDKKS--NSA---LFRAVGEGNAQL---VAI 159
Query: 304 -------ETYGDELESIHYVQTFRSLRLKYNQAQDKLKDLKDKSSTNLLDSVSLLRNKMT 356
+ Y +EL ++ QT+ L + DL S+ L L+R
Sbjct: 160 FGGQGNTDDYFEELRDLY--QTYHVL----------VGDLIKFSAETLS---ELIRTT-- 202
Query: 357 TIHRSSRAHQEPRQMDEDEEIWFNEEDSFED----ASADTSPPSVTSSQLGNSAASNVIT 412
+ + + ++ E W + D S S P + QL A V+T
Sbjct: 203 --LDAEKVF--TQGLNILE--WLENPSNTPDKDYLLSIPISCPLIGVIQL----AHYVVT 252
Query: 413 FESIGKSLSEKK--------VSSDSLGALVDYEEDSDEE 443
+ +G + E + S + A+ E DS E
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Score = 43.9 bits (103), Expect = 1e-04
Identities = 64/387 (16%), Positives = 124/387 (32%), Gaps = 144/387 (37%)
Query: 14 NTN----ELRRRDL----ALFLREYCQFS-QNLQPQAKEN------FYKTLSSLGIL--- 55
NT+ ELR DL + + + +FS + L + F + L+ L L
Sbjct: 165 NTDDYFEELR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 56 ---PALEVVLSAEDIATK-NAAIDILNFII-----EFSPSFIRDYTLQQAACISREEQDP 106
P + +LS I+ I + ++++ F+P +R Y + Q
Sbjct: 223 SNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL----KGATGHSQG- 276
Query: 107 MLVNVIIEQMVSDTDPELGRAVQLMSILKIL---------------IDPDNMLSSINKTE 151
++ V I + +D+ +V+ + +L + P + S+ E
Sbjct: 277 LVTAVAIAE--TDSWESFFVSVRKA--ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 152 KCEFLNYFYKYSIHLLMDPLL--DNTKKDEVQ--VDSYHNAQLLGVILELLSFCVEHHSY 207
+ P+L N +++VQ V+ N+ L
Sbjct: 333 G--------------VPSPMLSISNLTQEQVQDYVN-KTNSHL-------------PAGK 364
Query: 208 HI--------KNFVLN---KDLLRKVLVLMKSC--------------------HTFLVL- 235
+ KN V++ + L L L K+ + FL +
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 236 ----SSLRFMRKIIAM-KDDFYNRYI-IKGH-LFQPVIDTFNRNKGRYNL--LDSAVLE- 285
S L + + D + + PV DTF+ G +L L ++ E
Sbjct: 425 SPFHSHL--LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD---GS-DLRVLSGSISER 478
Query: 286 LFEYI--------KLEDIKVLCSHVVE 304
+ + I K +H+++
Sbjct: 479 IVDCIIRLPVKWETTTQFKA--THILD 503
Score = 42.3 bits (99), Expect = 3e-04
Identities = 65/464 (14%), Positives = 113/464 (24%), Gaps = 192/464 (41%)
Query: 40 QAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACI 99
Q +E F K L P E E F+ Y +
Sbjct: 32 QLQEQFNKILPE----PTEGFAADDEPTT-----------PAELVGKFL-GY-------V 68
Query: 100 SREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYF 159
S + + Q +L + + EF N +
Sbjct: 69 SSLVEP-------------------SKVGQFDQVLNLCLT--------------EFENCY 95
Query: 160 YKYS-IHLLMDPLLDNTKKDEVQVD----SYHNAQLLGVILELLSFCVEHHSYHIKNFVL 214
+ + IH L LL V+ +Y A+++ F + +S
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR----PFDKKSNS-------- 143
Query: 215 NKDLLRKVLVLMKSCHTFLV----------LSSLRFMRKIIAMKDDFYNRYIIKGHLFQP 264
L R V + + LR D Y Y
Sbjct: 144 --ALFRA--VGEGNAQLVAIFGGQGNTDDYFEELR----------DLYQTY-------HV 182
Query: 265 VIDTFNRNKGRYNLLDSAVLELFEYIKL-EDIKVLCSHVV---------ETYGDE--LES 312
++ + + L E I+ D + + + + D+ L S
Sbjct: 183 LVGDL---------IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 313 I-------------HYVQTFRSLRLKYNQAQDKLKDLKDKSSTNLLDSV----------- 348
I HYV T + L + + L K +T +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL-----KGATGHSQGLVTAVAIAETDS 288
Query: 349 --SLLRNKMTTIHRS----SRAHQ-------EPRQMDEDEEIWFNE-------------- 381
S + I R ++ P +++ E NE
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN--NEGVPSPMLSISNLTQ 346
Query: 382 ---EDSFEDASADTSPPSVTSSQLGNSAASNVITFESIG--KSL 420
+D ++ L N A + V++ G +SL
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS----GPPQSL 386
Score = 28.9 bits (64), Expect = 5.2
Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 73/185 (39%)
Query: 307 GDELESIHYVQTFRSLRLKYNQAQDKLKDLKDKSSTNLLDSVSLLRN--KMTTIHRSSRA 364
G +L Y +T ++ + +N+A + KD S +LD V N TIH
Sbjct: 1632 GMDL----Y-KTSKAAQDVWNRADNHFKDTYGFS---ILDIV---INNPVNLTIHFGGEK 1680
Query: 365 HQEPRQ----MDED---------EEIWFNEED------SFE------DASADTSPPSVTS 399
+ R+ M + E+I F E + +F A+ T P
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 400 SQ----------------------LG-NSA---ASNVITFESI-------GKSLSEKKVS 426
+ LG +A ++V++ ES+ G ++ V
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV-AVP 1798
Query: 427 SDSLG 431
D LG
Sbjct: 1799 RDELG 1803
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.56
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 309 ELESIHYVQTFRSLRLKYNQAQDKLK--DLKDKSSTNLLDSVSLLRNKMTTIHRSSRAHQ 366
E ESI + + RL+ A K+ + ++K+ +L + ++ ++R
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 367 EPRQMDEDEEI 377
+ D +I
Sbjct: 143 KAFYQQPDADI 153
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin
utilization, structural genomics, PSI, Pro structure
initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP:
c.56.5.4 d.58.19.1 PDB: 2imo_A
Length = 423
Score = 28.7 bits (65), Expect = 4.3
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 52 LGILPALEVV--LSAEDIATKNAAIDILNFIIE----FSPSFI 88
G L A + L + A ++++ E F F
Sbjct: 97 FGALAAWLAIDWLKTQYGAPL-RTVEVVAMAEEEGSRFPYVFW 138
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 28.4 bits (64), Expect = 4.6
Identities = 13/62 (20%), Positives = 22/62 (35%)
Query: 362 SRAHQEPRQMDEDEEIWFNEEDSFEDASADTSPPSVTSSQLGNSAASNVITFESIGKSLS 421
H E ++F ++ E D V S LG + A +F S+ ++
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVN 62
Query: 422 EK 423
E
Sbjct: 63 EN 64
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain,
M20 peptidase family, evolution, residue, dimerization
domain; 2.75A {Bacillus stearothermophilus}
Length = 408
Score = 28.7 bits (65), Expect = 4.6
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 52 LGILPALEVV--LSAEDIATKNAAIDILNFIIE----FSPSFI 88
LG+L +EVV ++ + T I+++ F E F I
Sbjct: 93 LGVLAGVEVVQTMNEHGVVTH-HPIEVVAFTDEEGARFRFGMI 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 5.3
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 42 KENFYKTLSSLGIL-----PALEVVLSAE 65
K+ K +SL + PAL + + E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB:
3fn1_A
Length = 98
Score = 26.8 bits (59), Expect = 5.3
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 4 KDLLHLLMEENTNELRRRDLALFLRE-----YCQFSQNLQPQAKENFYKTLSSLGILPAL 58
+++L L + +++ + L Y Q +++ + + N KTL LG++
Sbjct: 18 QEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ 77
Query: 59 EVVLSAEDIATKNAAIDILNFIIEFS 84
E+ ++ D+ T + F + F+
Sbjct: 78 ELAVA--DVTTPQT----VLFKLHFT 97
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein,
DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase;
HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A*
2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Length = 474
Score = 28.4 bits (64), Expect = 5.5
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 52 LGILPALEVV--LSAEDIATKNAAIDILNFIIE----FSPSFI 88
LG+L LEV+ + + ++ + F+ S
Sbjct: 127 LGVLAGLEVLRTFKDNNYVPN-YDVCVVVWFNAEGARFARSCT 168
>3nrh_A Uncharacterized protein BF1032; predominantly alpha-helical
protein, structural genomics, PS protein structure
initiative; 1.80A {Bacteroides fragilis}
Length = 182
Score = 27.7 bits (61), Expect = 6.6
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 11 MEENTNELRRRDLALFL---REYCQFSQNLQPQAKENFYKTLSSLGILPALEVVLS 63
M++ + + +++ F+ E+C F + + + F T L ILP L + S
Sbjct: 1 MKKESQVIFDKNVIEFVTVAAEFCAFLERAESMKRSTFVDTT--LKILPLLYLKAS 54
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 27.8 bits (61), Expect = 7.9
Identities = 28/214 (13%), Positives = 67/214 (31%), Gaps = 15/214 (7%)
Query: 47 KTLSSLGILPALEVVLSAEDIATKNAAIDILNFIIEFSPSFIRDYTLQQAACISREEQDP 106
K + ++ L+ + K + I+ I QQ A
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKN--FIPQLAQQGAV-------K 501
Query: 107 MLVNVIIEQMVSDTDPELGRAVQLMSILKILIDPDNMLSSINKTEKCEFLNYFYKYSIHL 166
+++ + + + + ++ + I +P + + FL + +
Sbjct: 502 IILEYLANKQDIGEPIRI-LGCRALTRMLIFTNPGLIFKKYSALNAIPFL-----FELLP 555
Query: 167 LMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLM 226
P+ DN ++ Q+ N + L + L S K+ V K + LM
Sbjct: 556 RSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM 615
Query: 227 KSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGH 260
+ L S+L + +++ ++ +
Sbjct: 616 LDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN 649
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 27.6 bits (61), Expect = 9.8
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 4 KDLLHLLMEENTNELRRRDLALFLRE-----YCQFSQNLQPQAKENFYKTLSSLGILPAL 58
+++L L + +++ + L Y Q +++ + + N KTL LG++
Sbjct: 354 QEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQ 413
Query: 59 EVVLSAEDIATKNAAIDILNFIIEFS 84
E L+ D+ T + F + F+
Sbjct: 414 E--LAVADVTTPQT----VLFKLHFT 433
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.370
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,669,708
Number of extensions: 395173
Number of successful extensions: 828
Number of sequences better than 10.0: 1
Number of HSP's gapped: 814
Number of HSP's successfully gapped: 29
Length of query: 450
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 353
Effective length of database: 3,993,456
Effective search space: 1409689968
Effective search space used: 1409689968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.1 bits)