RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10039
         (450 letters)



>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 92

 Score = 27.8 bits (62), Expect = 0.88
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 30 YCQFSQNLQPQAKENFYKTLSSLGILPALEVVLSAEDIATKNAAIDILNF 79
          Y Q   +++ + + N  KTL  LG++   E+ ++  D+ T    +  L+F
Sbjct: 45 YMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA--DVTTPQTVLFKLHF 92


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 27.1 bits (59), Expect = 5.9
 Identities = 19/169 (11%), Positives = 50/169 (29%), Gaps = 4/169 (2%)

Query: 87  FIRDYTLQQAACISREEQDPMLVNVIIEQMVSDTDPELGRAVQLMSILKI-LIDPDNMLS 145
                 L   A +   E        I + +V+    +  +    + +L++    PD +  
Sbjct: 118 TFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM 177

Query: 146 SINKTEKCEFL---NYFYKYSIHLLMDPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCV 202
               +     L   +     +   L+  L     ++     S   ++L  ++    +   
Sbjct: 178 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQ 237

Query: 203 EHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDF 251
           ++  Y +    L+  LLR +          +       +  I+    + 
Sbjct: 238 DYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEP 286


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,606,111
Number of extensions: 74526
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 11
Length of query: 450
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,199,356
Effective search space: 434166872
Effective search space used: 434166872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)