Query psy10040
Match_columns 93
No_of_seqs 129 out of 1635
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 16:20:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 99.7 8.8E-17 3E-21 117.6 8.8 64 2-68 6-69 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.6 3.5E-16 1.2E-20 114.4 7.6 60 3-66 30-91 (293)
3 2f69_A Histone-lysine N-methyl 99.6 2.7E-15 9.1E-20 109.3 5.1 60 5-67 2-63 (261)
4 2f69_A Histone-lysine N-methyl 98.4 2.2E-07 7.6E-12 67.4 4.3 35 2-36 22-59 (261)
5 2eqj_A Metal-response element- 29.9 39 0.0013 19.4 2.4 39 18-60 21-60 (66)
6 2xdp_A Lysine-specific demethy 23.8 1.3E+02 0.0046 19.0 4.4 30 19-48 73-102 (123)
7 1pby_A Quinohemoprotein amine 22.1 2.9E+02 0.0098 21.6 7.6 52 4-60 206-257 (489)
8 2qqr_A JMJC domain-containing 21.0 1.6E+02 0.0056 18.4 4.6 15 19-33 72-86 (118)
9 2kxh_B Peptide of FAR upstream 15.9 1.2E+02 0.0041 14.7 2.2 17 66-82 7-23 (31)
10 3jtz_A Integrase; four strande 12.9 2.3E+02 0.0077 16.4 3.4 49 38-89 25-77 (88)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.69 E-value=8.8e-17 Score=117.55 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=48.7
Q ss_pred ceEEEEeeCCEEeceeEEEecCCCEEEEEEeCCeEEeeEEEEeeCCCccCCeEEEEEeCCeeccccc
Q psy10040 2 TRYEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGTHGFPKNEGYFQDCKMMKRKK 68 (93)
Q Consensus 2 ~~Y~G~f~~g~~hG~G~~~~~~G~~y~G~f~~g~~~G~G~~~~~dG~~~~~~y~G~w~~~~~~~~~~ 68 (93)
++|+|+|+++++||+|+++|+||++|+|+|+++++||.|+++++||.+ .|+|.|+++++++.+.
T Consensus 6 ~~Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~---~y~G~~~~g~~~G~G~ 69 (293)
T 1h3i_A 6 STLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRL---IFKGQYKDNIRHGVCW 69 (293)
T ss_dssp CCCCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCE---EEEEEEETTEECSEEE
T ss_pred CEEEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCE---EEEEEEECCEEEeeEE
Confidence 457788888888888888888888888888888888888888888772 3788888877776554
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.64 E-value=3.5e-16 Score=114.37 Aligned_cols=60 Identities=23% Similarity=0.412 Sum_probs=37.5
Q ss_pred eEEEEeeCCEEeceeEEEecCCC-EEEEEEeCCeEEeeEEEEeeCCCccCCeEEEEEe-CCeeccc
Q psy10040 3 RYEGELLQGWFHGHGVFWRADGM-KFEGEFRGGRIWGHGLVTYADGTHGFPKNEGYFQ-DCKMMKR 66 (93)
Q Consensus 3 ~Y~G~f~~g~~hG~G~~~~~~G~-~y~G~f~~g~~~G~G~~~~~dG~~~~~~y~G~w~-~~~~~~~ 66 (93)
+|+|+|+++++||.|+++++||. +|+|+|+++++||.|+++++||.+ |+|.|+ ++++++.
T Consensus 30 ~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~----y~G~~~~~g~~~G~ 91 (293)
T 1h3i_A 30 VLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGS----LVGEVNEDGEMTGE 91 (293)
T ss_dssp EEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCE----EEEECCTTSCSCEE
T ss_pred EEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCE----EEEEEeECCeEeCC
Confidence 46666666666666666666666 566666666666666666666664 666666 6655544
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.56 E-value=2.7e-15 Score=109.31 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=48.1
Q ss_pred EEEeeCCEEeceeEEEecCCCEEEEEEe-CCeEEee-EEEEeeCCCccCCeEEEEEeCCeecccc
Q psy10040 5 EGELLQGWFHGHGVFWRADGMKFEGEFR-GGRIWGH-GLVTYADGTHGFPKNEGYFQDCKMMKRK 67 (93)
Q Consensus 5 ~G~f~~g~~hG~G~~~~~~G~~y~G~f~-~g~~~G~-G~~~~~dG~~~~~~y~G~w~~~~~~~~~ 67 (93)
.|+|++|++||.|+++|+||++|+|+|. +|.+||. |+|++|||.. .|+|.|+++.++...
T Consensus 2 ~g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~---~~~G~~~~g~~~~g~ 63 (261)
T 2f69_A 2 AMGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERT---ALYGKFIDGEMIEGK 63 (261)
T ss_dssp ---------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSE---EEEEEEETTEEEEEE
T ss_pred CceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCE---EEEEEEeCCcEeeee
Confidence 4899999999999999999999999999 9999999 9999999996 699999999997653
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.40 E-value=2.2e-07 Score=67.40 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=33.8
Q ss_pred ceEEEEee-CCEEece-eEEEecCCCE-EEEEEeCCeE
Q psy10040 2 TRYEGELL-QGWFHGH-GVFWRADGMK-FEGEFRGGRI 36 (93)
Q Consensus 2 ~~Y~G~f~-~g~~hG~-G~~~~~~G~~-y~G~f~~g~~ 36 (93)
++|+|+|. ++.+||. |+|+|+||.+ |+|+|.+|.+
T Consensus 22 ~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 22 GSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 59 (261)
T ss_dssp CEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred CEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcE
Confidence 58999999 9999999 9999999999 9999999988
No 5
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=29.88 E-value=39 Score=19.36 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=28.5
Q ss_pred EEEecCCCEEEEEEeCCeE-EeeEEEEeeCCCccCCeEEEEEeC
Q psy10040 18 VFWRADGMKFEGEFRGGRI-WGHGLVTYADGTHGFPKNEGYFQD 60 (93)
Q Consensus 18 ~~~~~~G~~y~G~f~~g~~-~G~G~~~~~dG~~~~~~y~G~w~~ 60 (93)
...|.||..|.|.-..=.. .|..+..|.|++. +=-.|++
T Consensus 21 LA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~----~w~~~kd 60 (66)
T 2eqj_A 21 LARWSDGLFYLGTIKKINILKQSCFIIFEDSSK----SWVLWKD 60 (66)
T ss_dssp EEECTTSCEEEEEEEEEETTTTEEEEEETTTEE----EEEETTT
T ss_pred EEEEccCcEEEeEEEEEccCCcEEEEEEccCCE----EEEEeec
Confidence 3567999999998764443 4888899999986 5555554
No 6
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=23.82 E-value=1.3e+02 Score=18.99 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=16.5
Q ss_pred EEecCCCEEEEEEeCCeEEeeEEEEeeCCC
Q psy10040 19 FWRADGMKFEGEFRGGRIWGHGLVTYADGT 48 (93)
Q Consensus 19 ~~~~~G~~y~G~f~~g~~~G~G~~~~~dG~ 48 (93)
..|.||..|.+.|..-...=.=+..+.||+
T Consensus 73 V~W~DG~~y~a~f~g~~~~~~YtV~FeDgs 102 (123)
T 2xdp_A 73 VKWPDGKLYGAKYFGSNIAHMYQVEFEDGS 102 (123)
T ss_dssp EECTTSCEEEEEEEEEEEEEEEEEECTTSC
T ss_pred EEcCCCCEEeEEEeeeeeEEEEEEEECCCC
Confidence 347777777777765433332334444554
No 7
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=22.11 E-value=2.9e+02 Score=21.63 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=38.3
Q ss_pred EEEEeeCCEEeceeEEEecCCCEEEEEEeCCeEEeeEEEEeeCCCccCCeEEEEEeC
Q psy10040 4 YEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGTHGFPKNEGYFQD 60 (93)
Q Consensus 4 Y~G~f~~g~~hG~G~~~~~~G~~y~G~f~~g~~~G~G~~~~~dG~~~~~~y~G~w~~ 60 (93)
.+|.|.+|...|.|+...-.|....++..-+...=.=+|.-+||+ .+|.|-.
T Consensus 206 ~~~~~adG~~~~~G~~~vy~gyewR~~~~~~~~~~rqv~a~~~g~-----~~GR~f~ 257 (489)
T 1pby_A 206 MTLDFADGSRSFSGTGRILGAGEWRATLSDGTVTIRQIFALQDGR-----FSGRWHD 257 (489)
T ss_dssp EEEECSSCEEEEEEEEEEETTTEEEEEEEETTEEEEEEEEEETTE-----EEEEEEE
T ss_pred EEEEecCCCcCcceeEEEeccceEEEEeccCCeEhhhheecCCCc-----eeeeeee
Confidence 457788888888888888888888888777666666667777774 6776643
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=21.03 E-value=1.6e+02 Score=18.43 Aligned_cols=15 Identities=20% Similarity=0.393 Sum_probs=11.2
Q ss_pred EEecCCCEEEEEEeC
Q psy10040 19 FWRADGMKFEGEFRG 33 (93)
Q Consensus 19 ~~~~~G~~y~G~f~~ 33 (93)
..|.||..|.+.|..
T Consensus 72 V~W~DG~~y~a~f~g 86 (118)
T 2qqr_A 72 VRWTDGQVYGAKFVA 86 (118)
T ss_dssp EECTTSCEEEEEEEE
T ss_pred EEcCCCCEeeeEEec
Confidence 457788888888774
No 9
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=15.92 E-value=1.2e+02 Score=14.72 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=11.8
Q ss_pred ccccHHHHHHHHHHHHH
Q psy10040 66 RKKCLDVVKKAQKVSLM 82 (93)
Q Consensus 66 ~~~~~~~v~~a~~~~~~ 82 (93)
.....+++++|++.+..
T Consensus 7 ~daFadA~~RaRQIaAK 23 (31)
T 2kxh_B 7 NDAFKDALQRARQIAAK 23 (31)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34567888888877643
No 10
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=12.92 E-value=2.3e+02 Score=16.37 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=27.6
Q ss_pred eeEEEEeeCCCccCCeEEEEE-eCCee--ccccccHH-HHHHHHHHHHHHHhcccc
Q psy10040 38 GHGLVTYADGTHGFPKNEGYF-QDCKM--MKRKKCLD-VVKKAQKVSLMARMNFGQ 89 (93)
Q Consensus 38 G~G~~~~~dG~~~~~~y~G~w-~~~~~--~~~~~~~~-~v~~a~~~~~~a~~~~~~ 89 (93)
|....+.++|.. .+.=.+ .+++. +.-+..+. .+..|++.+..+|.+..+
T Consensus 25 GL~L~V~psG~K---~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~~ 77 (88)
T 3jtz_A 25 GLYLLVKPGGSR---HWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLAL 77 (88)
T ss_dssp TEEEEECTTSCE---EEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEecCCCE---EEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHHc
Confidence 666667777764 222222 12322 22233333 588899999888877653
Done!