RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10040
(93 letters)
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 36.3 bits (84), Expect = 7e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 4 YEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGT 48
YEGE +G HG+G G +EGEF GG + G G T DGT
Sbjct: 34 YEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGT 78
Score = 36.0 bits (83), Expect = 0.001
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 2 TRYEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADG 47
YEGE G+ HG G + DG ++G +R G G Y +G
Sbjct: 55 ATYEGEFSGGYMHGSGTYTGTDGTTYKGRWRLNLKHGLGYQRYPNG 100
Score = 35.6 bits (82), Expect = 0.001
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 4 YEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADG 47
+EG +QG G G + A+G + G+ +GG++ G G +T+ G
Sbjct: 103 FEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSG 146
Score = 33.3 bits (76), Expect = 0.008
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 4 YEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGT 48
Y G++ G G G G +EG++ G + G G+ T++DG
Sbjct: 126 YLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHGFGVYTWSDGG 170
Score = 31.7 bits (72), Expect = 0.034
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 4 YEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGTHGFPKNEGYFQDCKM 63
YEG+ L G HG GV+ +DG + G + G G G V Y G+ P + ++ + +
Sbjct: 149 YEGQWLDGMMHGFGVYTWSDGGCYVGTWTRGLKDGKG-VFYPAGSR-VPAVQEFYLN-AL 205
Query: 64 MKRKKCLDVVKKAQKVSLMARMNFGQDNTA 93
KR D+ ++ Q +S + ++
Sbjct: 206 RKRGVLPDLRRQNQVLSSHNSEQLSRGVSS 235
Score = 29.0 bits (65), Expect = 0.33
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 4 YEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGT 48
Y G LL G G + +DG +EGE+R G G+G +++ G
Sbjct: 11 YSGSLLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGA 55
>gnl|CDD|197832 smart00698, MORN, Possible plasma membrane-binding motif in
junctophilins, PIP-5-kinases and protein kinases.
Length = 22
Score = 30.8 bits (71), Expect = 0.008
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 3 RYEGELLQGWFHGHGVFWRAD 23
RYEGE G HG GV+ A+
Sbjct: 2 RYEGEWRNGKRHGRGVYTYAN 22
>gnl|CDD|226989 COG4642, COG4642, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 139
Score = 30.9 bits (70), Expect = 0.039
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 3 RYEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADG 47
YEG G F G G +G + G F G+ G G + DG
Sbjct: 79 IYEGPFNSGKFRGQGTRGSFNGWLYIGRFTEGQANGKGFLLKEDG 123
Score = 27.8 bits (62), Expect = 0.67
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 4 YEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADG 47
Y G L G +G G + A+G +EG F G+ G G +G
Sbjct: 57 YTGTLKNGKMNGQGTYTFANGDIYEGPFNSGKFRGQGTRGSFNG 100
Score = 27.4 bits (61), Expect = 0.92
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 2 TRYEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADG 47
R G L QG G G +G + G + G++ G G T+A+G
Sbjct: 32 ARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANG 77
Score = 26.2 bits (58), Expect = 2.2
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 2 TRYEGELLQGWFHGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGTHGFPKNEGYFQDC 61
RYEG ++G G + + G + G++ G G + Y +G G ++
Sbjct: 9 LRYEGFFVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGR----IYTGTLKNG 64
Query: 62 KM 63
KM
Sbjct: 65 KM 66
>gnl|CDD|202256 pfam02493, MORN, MORN repeat. The MORN (Membrane Occupation and
Recognition Nexus) repeat is found in multiple copies
in several proteins including junctophilins (See
Takeshima et al. Mol. Cell 2000;6:11-22). A MORN-repeat
protein has been identified in the parasite Toxoplasma
gondiis a dynamic component of cell division apparatus
in Toxoplasma gondii. It has been hypothesised to
functions as a linker protein between certain membrane
regions and the parasite's cytoskeleton.
Length = 23
Score = 27.8 bits (63), Expect = 0.12
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 4 YEGELLQGWFHGHGVFWRADG 24
YEGE G HG GV+ DG
Sbjct: 1 YEGEWKNGKRHGKGVYTWPDG 21
Score = 27.4 bits (62), Expect = 0.20
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 27 FEGEFRGGRIWGHGLVTYADGT 48
+EGE++ G+ G G+ T+ DG
Sbjct: 1 YEGEWKNGKRHGKGVYTWPDGD 22
>gnl|CDD|193549 cd05674, M20_yscS, M20 Peptidase, carboxypeptidase yscS. Peptidase
M20 family, yscS (GlyX-carboxypeptidase, CPS1,
carboxypeptidase S, carboxypeptidase a, carboxypeptidase
yscS, glycine carboxypeptidase)-like subfamily. This
group mostly contains proteins that have been
uncharacterized to date, but also includes vacuolar
proteins involved in nitrogen metabolism which are
essential for use of certain peptides that are sole
nitrogen sources. YscS releases a C-terminal amino acid
from a peptide that has glycine as the penultimate
residue. It is synthesized as one polypeptide chain
precursor which yields two active precursor molecules
after carbohydrate modification in the secretory
pathway. The proteolytically unprocessed forms are
associated with the membrane, whereas the mature forms
of the enzyme are soluble. Enzymes in this subfamily
may also cleave intracellularly generated peptides in
order to recycle amino acids for protein synthesis.
Length = 441
Score = 28.3 bits (64), Expect = 0.47
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 27 FEGEFRGGRIWGHG 40
F G G IWG G
Sbjct: 94 FSGHIDDGYIWGRG 107
>gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE)-like. Peptidase M20 acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) like family of enzymes catalyze analogous
reactions and share a common activator, the metal ion
(usually Co2+ or Zn2+). ArgE catalyzes a broad range of
substrates, including N-acetylornithine,
alpha-N-acetylmethionine and alpha-N-formylmethionine,
while DapE catalyzes the hydrolysis of
N-succinyl-L,L-diaminopimelate (L,L-SDAP) to
L,L-diaminopimelate and succinate. Proteins in this
family are mostly bacterial and have been inferred by
homology as being related to both, ArgE and DapE. This
family also includes N-acetyl-L-citrulline deacetylase
(ACDase; acetylcitrulline deacetylase), a unique, novel
enzyme found in Xanthomonas campestris, a plant
pathogen, in which N-acetyl-L-ornithine is the
substrate for transcarbamoylation reaction, and the
product is N-acetyl-L-citrulline. Thus, in the arginine
biosynthesis pathway, ACDase subsequently catalyzes the
hydrolysis of N-acetyl-L-citrulline to acetate and
L-citrulline.
Length = 365
Score = 27.6 bits (62), Expect = 0.86
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 13 FHGH-------GVFWRADGMKFEGEFRGGRIWGHG 40
+GH W D FEGE GR++G G
Sbjct: 62 LNGHLDTVPVGDEDWTYD--PFEGEIEDGRLYGRG 94
>gnl|CDD|219410 pfam07433, DUF1513, Protein of unknown function (DUF1513). This
family consists of several bacterial proteins of around
360 residues in length. The function of this family is
unknown.
Length = 304
Score = 27.2 bits (61), Expect = 1.2
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 13 FHGHGVFWRADGMKF---EGEFRGGRIWGHGLVTYADGTHGFPK 53
F+GHGVF DG E ++ GR G++ D G+ +
Sbjct: 52 FYGHGVF-SPDGRLLYTTENDYETGR----GVIGVYDAADGYKR 90
>gnl|CDD|226021 COG3490, COG3490, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 366
Score = 27.1 bits (60), Expect = 1.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 13 FHGHGVFWRADGMKF---EGEFRGGRIWGHGLVTYADGTHGFPK 53
F+GHGVF DG E +F R G++ D GF +
Sbjct: 115 FYGHGVF-SPDGRLLYATENDFDPNR----GVIGVYDAREGFQR 153
>gnl|CDD|226917 COG4542, PduX, Protein involved in propanediol utilization, and
related proteins (includes coumermycin biosynthetic
protein), possible kinase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 293
Score = 27.1 bits (60), Expect = 1.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 6 GELLQGWFHGH 16
GELLQG F+G
Sbjct: 23 GELLQGSFNGS 33
>gnl|CDD|237268 PRK13013, PRK13013, succinyl-diaminopimelate desuccinylase;
Reviewed.
Length = 427
Score = 27.0 bits (60), Expect = 1.4
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 15 GHGVFWRADGMKFEGEFRGGRIWGHG 40
GHG W D F GE + GRI+G G
Sbjct: 99 GHG--WTRD--PFGGEVKDGRIYGRG 120
>gnl|CDD|220462 pfam09899, DUF2126, Putative amidoligase enzyme (DUF2126). Members
of this family of bacterial domains are predominantly
found in transglutaminase and transglutaminase-like
proteins. Their exact function is, as yet, unknown, but
they are likely to act as amidoligase enzymes Protein in
this family are found in conserved gene neighborhoods
encoding a glutamine amidotransferase-like thiol
peptidase (in proteobacteria) or an Aig2 family
cyclotransferase protein (in firmicutes).
Length = 817
Score = 26.8 bits (60), Expect = 1.9
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 3 RYEGELLQGWFHGHGVFWRADG 24
Y GE L W G++WR DG
Sbjct: 109 WYPGESLPRW--ALGLYWRKDG 128
>gnl|CDD|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to
acetylornithine deacetylases and
succinyl-diaminopimelate desuccinylases. Peptidase M20
family, Uncharacterized protein subfamily with
similarity to acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) subfamily. This group includes the
hypothetical protein ygeY from Escherichia coli, a
putative deacetylase, but many in this subfamily are
classified as unassigned peptidases. ArgE/DapE enzymes
catalyze analogous reactions and share a common
activator, the metal ion (usually Co2+ or Zn2+). ArgE
catalyzes a broad range of substrates, including
N-acetylornithine, alpha-N-acetylmethionine and
alpha-N-formylmethionine, while DapE catalyzes the
hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP)
to L,L-diaminopimelate and succinate. Proteins in this
subfamily are mostly archaeal, and have been inferred by
homology as being related to both ArgE and DapE.
Length = 390
Score = 25.4 bits (56), Expect = 4.4
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 13 FHGH------GVFWRADGMKFEGEFRGGRIWGHG 40
F+GH G W D F+ + GRI+G G
Sbjct: 76 FNGHYDVVPPGDGWSVD--PFKPVVKDGRIYGRG 107
>gnl|CDD|221058 pfam11284, DUF3085, Protein of unknown function (DUF3085). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 89
Score = 24.9 bits (55), Expect = 4.9
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 14 HGHGVFWRADGMKFEGEFRGGRIWGHGLVTYADGTHGFPK-NEGYFQDC 61
HGV+ A+G + G R LV YA+G + P+ ++ ++
Sbjct: 7 KDHGVYLMANG-GEDLS-NGRR----PLVAYAEGCN--PETDDDWWDRA 47
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.472
Gapped
Lambda K H
0.267 0.0933 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,707,978
Number of extensions: 367769
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 29
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (23.8 bits)